Citrus Sinensis ID: 038710

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--

MALNLRIIFVITILLSLNSSHSLPTPQQQPPPPPSASLSTACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTVLVSLATALAPLLMQ

cccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEcEEEEEcccEEEccccccccEEEccccEEccccHHHHHHHHHHcccccEEEEEEEEEEEEEccccccccccccccEEEEEEEcccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEcccccccccccccccEEEcccccccccccccEEEEEEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccEEEEEEEccccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEEcEEccccccEEEEEccccHHHHHHHcccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcc

cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEcccccccccccHEEEEEEEEcccccHcccEEEEEEccccEEEEEcccEEEEcccccccccccccEEEEcccHHHHHcHHHHccccHHHEEEEEEEEcccccccccccccccEEEEEEEEEEccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEccccEEEEEccccccccccccccEccccccccccccccccccccccEEEEccccccccccEccccccccccEEccccccHHHcEEEEEEEEEccccccccEEEccccccEEEcccccccccccccccEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHcccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEcccccccccccHHHEcHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccEEEccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHc

MALNLRIIFVITILLslnsshslptpqqqpppppsaslstacnGVFLSythttgypipptnpanqayrfESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLAdvtsslpafvgngtvfaglpetdLKSAVETARDWTQMEVQIRLVGtqfgvgapnvplpancnyVMHICcikdssfrskitaeneflprqdgditiMYDVMRSSETDYWAQVSISnhntlrrldnwklsgewmrdefiygmkgaypyvvdtsdcifgrqgqfykdmdfsaalncerrptiidlpptrandtnlgrvpfccrngtilppnmdpsksksIFQMQVykmppdlnkselippqkwkiiggtpnpdnqyqcgppvrvspstfpdssglptesrsIASWQVVCnitrpkqtrprccvsfsaffndsaipcstcacgcnnipsqtcsaiepalllppyallipfenrtvEAVEWAEIkrlsvpnplpcgdncgvrinwhllsdyrggWTARITLlnwgetdlADWFAAvqldnagpgfeqvysfngttlagsnnTIFLQGISDfnnlaaekddanprkhprvpgyqqsVILFTkkttpninvargdgfptkvifngdecalpavlpsssggkimTATTVLVSLATALAPLLMQ

MALNLRIIFVITILLSLNSSHSLPTPQQQPPPPPSASLSTACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAeneflprqdgdiTIMYDVMRSSETDYWAQVsisnhntlrrldnwklSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERrptiidlpptrandtnlgRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQVVCNitrpkqtrpRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAVEWAEIkrlsvpnplpcgdNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTVLVSLATALAPLLMQ

MALNLRIIFVITILLSLNsshslptpqqqpppppsaslstaCNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEpalllppyallipFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMtattvlvslatalapllMQ

****************************************ACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTIL*********************************KWKII***********************************IASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNL****************GYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTVLVSLATALAP****

***NLRIIFVITILLSLNSSH******************TACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFP**SGLPTESRSIASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCN****************************T***VEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDA**RKHPR*PGYQQSVILFTKKT****NVARGDGFPTKVIFNGDECALPAVLPS*****IMTATTVLVSLATALAPLLMQ

MALNLRIIFVITILLSLNSSH*****************STACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVS**************RSIASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTVLVSLATALAPLLMQ

*ALNLRIIFVITILLSLNSSHSLPTPQQQPPPPPSASLSTACNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTVLVSLATALAPLLMQ

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iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo

SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		642	2.2.26 [Sep-21-2011]
Q8GZ17		661	COBRA-like protein 7 OS=A	yes	no	0.892	0.866	0.632	0.0
Q9LIB6		653	COBRA-like protein 8 OS=A	no	no	0.975	0.958	0.568	0.0
Q9FJ13		663	COBRA-like protein 9 OS=A	no	no	0.992	0.960	0.548	0.0
Q9LJU0		672	COBRA-like protein 10 OS=	no	no	0.936	0.894	0.498	1e-176
Q9T045		668	COBRA-like protein 11 OS=	no	no	0.954	0.917	0.462	1e-175
Q9LFW3		431	COBRA-like protein 4 OS=A	no	no	0.599	0.893	0.287	1e-36
Q94KT8		456	Protein COBRA OS=Arabidop	no	no	0.599	0.844	0.286	1e-36
Q6Z4G7		451	COBRA-like protein 6 OS=O	no	no	0.579	0.824	0.289	8e-36
Q8L8Q7		441	COBRA-like protein 2 OS=A	no	no	0.566	0.825	0.274	5e-35
Q6Z4G8		446	COBRA-like protein 1 OS=O	no	no	0.635	0.914	0.276	4e-34

>sp\|Q8GZ17\|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2	Back alignment and function desciption

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/596 (63%), Positives = 452/596 (75%), Gaps = 23/596 (3%)

Query: 42  CNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFA 101
           CNGVF+SYTHT G  IPP + ANQ YRFES +T+LN+G +ELKSWRVFV F H E+LV A
Sbjct: 46  CNGVFVSYTHTKGSKIPPNDTANQPYRFESVITVLNHGRDELKSWRVFVKFAHREILVSA 105

Query: 102 TNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPN 161
           +N VL+D  SSLP  V NGTVFAG P +DLKSA++TA D TQM+ ++ LVGTQFGV  PN
Sbjct: 106 SNAVLSD-GSSLPVSVENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPN 164

Query: 162 VPLPANCNY----------------VMHICCIKDSSFRSKITAENEFLPRQDGDITIMYD 205
           VPLP N                   V+ +CCI D  + ++   +NEFLPR+DGD+TIMYD
Sbjct: 165 VPLPKNITLATDGWKCPKATQKGTNVLQVCCIPDPDYDNREIIDNEFLPRKDGDLTIMYD 224

Query: 206 VMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQ 265
           V+RS  ++Y AQV++ NHN L RLDNWKLS +WMRDEFIY MKGAYP +VD+SDC+ G Q
Sbjct: 225 VVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQ 284

Query: 266 GQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIF 325
            + Y+D+DFS  L+C RRPT+IDLPPT+ ND+  G +PFCCRNGTILP +MDPSKS S+F
Sbjct: 285 AKHYQDLDFSNVLSCARRPTVIDLPPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVF 344

Query: 326 QMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRS 385
           QMQVYKMPPDLN S L PPQ W+ I GT NPD  Y+CGPPVRVSPS F D SGLP+   +
Sbjct: 345 QMQVYKMPPDLNISALSPPQNWR-INGTLNPD--YKCGPPVRVSPSQFVDPSGLPSNRTA 401

Query: 386 IASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGC-NNIPSQTCSAIEPALLL 444
            ASWQVVCNIT+PK   PRCCVSFSA+FNDS +PC TCACGC +N  ++ CSA  P+LLL
Sbjct: 402 FASWQVVCNITQPKDASPRCCVSFSAYFNDSIVPCKTCACGCSSNKAARACSATAPSLLL 461

Query: 445 PPYALLIPFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLL 504
           P  ALL+PFENRT   V WA +K+  VPNP+PCGDNCGV INWHL +DYRGGWTAR+T+ 
Sbjct: 462 PQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDNCGVSINWHLATDYRGGWTARVTVF 521

Query: 505 NWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLA--GSNNTIFLQGISDFNNLAAEKDD 562
           NWGETD  DWF AVQ+ NA PGFE+ YSFN +T+   G NNTIF++G+   N L AE+D 
Sbjct: 522 NWGETDFVDWFTAVQMKNAAPGFEKAYSFNASTIGINGKNNTIFMEGLPGLNYLVAERDG 581

Query: 563 ANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSS 618
            NP K+PR+PG QQSV+ FTKK TP INV  GDGFP+KV FNG+EC+LP +LP  S
Sbjct: 582 ENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDGFPSKVFFNGEECSLPTILPMRS 637

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LIB6\|COBL8_ARATH COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1	Back alignment and function description

>sp\|Q9FJ13\|COBL9_ARATH COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1	Back alignment and function description

>sp\|Q9LJU0\|CBL10_ARATH COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1	Back alignment and function description

>sp\|Q9T045\|CBL11_ARATH COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2	Back alignment and function description

>sp\|Q9LFW3\|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2	Back alignment and function description

>sp\|Q94KT8\|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1	Back alignment and function description

>sp\|Q6Z4G7\|COBL6_ORYSJ COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1	Back alignment and function description

>sp\|Q8L8Q7\|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2	Back alignment and function description

>sp\|Q6Z4G8\|COBL1_ORYSJ COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
225431865		651	PREDICTED: COBRA-like protein 7 [Vitis v	0.962	0.949	0.630	0.0
255564290		650	Protein COBRA precursor, putative [Ricin	0.928	0.916	0.671	0.0
224128422		640	predicted protein [Populus trichocarpa]	0.968	0.971	0.644	0.0
356521813		643	PREDICTED: COBRA-like protein 7-like [Gl	0.898	0.897	0.642	0.0
255556282		646	Protein COBRA precursor, putative [Ricin	0.940	0.934	0.632	0.0
224110252		650	predicted protein [Populus trichocarpa]	0.976	0.964	0.603	0.0
18414592		661	COBRA-like protein 7 [Arabidopsis thalia	0.892	0.866	0.632	0.0
449528489		650	PREDICTED: COBRA-like protein 7-like [Cu	0.942	0.930	0.606	0.0
297800554		658	ATSEB1 [Arabidopsis lyrata subsp. lyrata	0.904	0.882	0.627	0.0
449432894		650	PREDICTED: COBRA-like protein 7-like [Cu	0.942	0.930	0.603	0.0

>gi\|225431865\|ref\|XP_002275330.1\| PREDICTED: COBRA-like protein 7 [Vitis vinifera] gi\|296083290\|emb\|CBI22926.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/647 (63%), Positives = 494/647 (76%), Gaps = 29/647 (4%)

Query: 1   MALNLRIIFVITILLSLNSSHSLPTPQQQPPPPPSASLSTACNGVFLSYTHTTGYPIPP- 59
           MA +L  + V+ ++++     +L    Q   P P+A    +CNG+FLSY +T+G  IPP 
Sbjct: 1   MAFSLIRLLVLDLIVAALIPIAL---CQSEAPSPTAD---SCNGIFLSYAYTSGAKIPPN 54

Query: 60  --TNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSSLPAFV 117
             ++P  Q YRFEST+T+LNNGL ELKSWRVFVGFQH E LV A+  VLA+ TS LPA V
Sbjct: 55  LNSDPTEQPYRFESTLTVLNNGLEELKSWRVFVGFQHKEYLVSASGAVLANGTS-LPATV 113

Query: 118 GNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYV------ 171
           G G VFAG P TDLK+A+ETA D TQM++Q++ VGTQFGVG+PNVP+P N + V      
Sbjct: 114 GGGVVFAGYPSTDLKTAIETAGDTTQMQIQVQFVGTQFGVGSPNVPMPTNVSLVNDGFVC 173

Query: 172 ----------MHICCIKDSSFRSKITAENEFLPRQDGDITIMYDVMRSSETDYWAQVSIS 221
                     M +CC KDS+++S +++++EFLPRQ+GD+TIMYDV R+ E+ YWAQ++IS
Sbjct: 174 PKPTMQGTSEMQVCCTKDSNYKSNVSSDDEFLPRQNGDLTIMYDVTRTYESSYWAQITIS 233

Query: 222 NHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCE 281
           NHN L RLD+WKLS +WM+ EFI  MKGAYP +VDT+DCIFG QGQ+Y+D+DFS  LNCE
Sbjct: 234 NHNPLGRLDDWKLSWDWMKGEFINSMKGAYPDIVDTTDCIFGEQGQYYQDLDFSNVLNCE 293

Query: 282 RRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSEL 341
           RRPTIIDLPPT+ANDT LG +PFCCRNGTILPP MDPSKS S+FQM VYKMPPDLN+SEL
Sbjct: 294 RRPTIIDLPPTKANDTTLGLIPFCCRNGTILPPTMDPSKSTSVFQMNVYKMPPDLNRSEL 353

Query: 342 IPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQVVCNITRPKQT 401
            PPQ W I  GT NPD  YQCG PVRVSPS FPD+SGLP+ S ++ASWQVVCNIT+PK  
Sbjct: 354 TPPQNWNI-SGTLNPD--YQCGSPVRVSPSEFPDTSGLPSNSTAVASWQVVCNITQPKGA 410

Query: 402 RPRCCVSFSAFFNDSAIPCSTCACGCNNIPSQTCSAIEPALLLPPYALLIPFENRTVEAV 461
            P+CCVSFSA++N+S +PC TCACGC + PSQTCS    A+LLP  ALL+PFENRT    
Sbjct: 411 SPKCCVSFSAYYNESVVPCKTCACGCPSTPSQTCSTTAAAILLPSEALLVPFENRTALTK 470

Query: 462 EWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLLNWGETDLADWFAAVQLD 521
            WAE+K L++PNP+PCGDNCGV INWHL +DY  GWTARIT+ NWGET   DWFAAV++D
Sbjct: 471 AWAELKHLTIPNPMPCGDNCGVSINWHLYTDYSRGWTARITIFNWGETSYVDWFAAVEMD 530

Query: 522 NAGPGFEQVYSFNGTTLAGSNNTIFLQGISDFNNLAAEKDDANPRKHPRVPGYQQSVILF 581
            A PGFE++YSFN T L G NNTIF+QGI   N L AE D ANP+K PRVPG QQSVI F
Sbjct: 531 KAAPGFEKMYSFNATALDGVNNTIFMQGIEGLNYLVAETDAANPKKDPRVPGKQQSVISF 590

Query: 582 TKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSSGGKIMTATTV 628
           TKK TP INVA G GFP+KV FNG+EC+LP+VLP+SS  K   A T+
Sbjct: 591 TKKPTPGINVAGGAGFPSKVFFNGEECSLPSVLPTSSSYKKSPAMTI 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255564290\|ref\|XP_002523142.1\| Protein COBRA precursor, putative [Ricinus communis] gi\|223537704\|gb\|EEF39327.1\| Protein COBRA precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224128422\|ref\|XP_002320325.1\| predicted protein [Populus trichocarpa] gi\|222861098\|gb\|EEE98640.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521813\|ref\|XP_003529545.1\| PREDICTED: COBRA-like protein 7-like [Glycine max]	Back alignment and taxonomy information

>gi\|255556282\|ref\|XP_002519175.1\| Protein COBRA precursor, putative [Ricinus communis] gi\|223541490\|gb\|EEF43039.1\| Protein COBRA precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224110252\|ref\|XP_002315461.1\| predicted protein [Populus trichocarpa] gi\|118485798\|gb\|ABK94747.1\| unknown [Populus trichocarpa] gi\|222864501\|gb\|EEF01632.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|18414592|ref|NP_567484.1| COBRA-like protein 7 [Arabidopsis thaliana] gi|34222586|sp|Q8GZ17.2|COBL7_ARATH RecName: Full=COBRA-like protein 7; Flags: Precursor gi|2244970|emb|CAB10391.1| hypothetical protein [Arabidopsis thaliana] gi|2326365|emb|CAA74765.1| putative cell wall protein [Arabidopsis thaliana] gi|7268361|emb|CAB78654.1| hypothetical protein [Arabidopsis thaliana] gi|332658295|gb|AEE83695.1| COBRA-like protein 7 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449528489\|ref\|XP_004171237.1\| PREDICTED: COBRA-like protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297800554\|ref\|XP_002868161.1\| ATSEB1 [Arabidopsis lyrata subsp. lyrata] gi\|297313997\|gb\|EFH44420.1\| ATSEB1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449432894\|ref\|XP_004134233.1\| PREDICTED: COBRA-like protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
TAIR\|locus:2130100		661	COBL7 "AT4G16120" [Arabidopsis	0.892	0.866	0.619	2.3e-206
TAIR\|locus:2093673		653	COBL8 "COBRA-like protein 8 pr	0.937	0.921	0.564	1.1e-190
TAIR\|locus:2155889		663	SHV2 "SHAVEN 2" [Arabidopsis t	0.897	0.868	0.564	1.5e-184
TAIR\|locus:2085785		672	COBL10 "COBRA-like protein 10	0.892	0.852	0.494	1.8e-165
TAIR\|locus:2136452		668	COBL11 "COBRA-like protein 11	0.894	0.859	0.471	5.5e-157
TAIR\|locus:2143151		431	IRX6 "IRREGULAR XYLEM 6" [Arab	0.218	0.324	0.331	1e-28
TAIR\|locus:2024377		454	COBL6 "AT1G09790" [Arabidopsis	0.214	0.303	0.337	1.4e-27
TAIR\|locus:2086601		441	COBL2 "AT3G29810" [Arabidopsis	0.222	0.324	0.354	7.1e-27
TAIR\|locus:2173532		456	COB "AT5G60920" [Arabidopsis t	0.398	0.561	0.275	1e-24
TAIR\|locus:2076507		452	COBL1 "COBRA-like protein 1 pr	0.392	0.557	0.275	6.1e-21

TAIR\|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1996 (707.7 bits), Expect = 2.3e-206, P = 2.3e-206
 Identities = 369/596 (61%), Positives = 442/596 (74%)

Query:    42 CNGVFLSYTHTTGYPIPPTNPANQAYRFESTVTILNNGLNELKSWRVFVGFQHNELLVFA 101
             CNGVF+SYTHT G  IPP + ANQ YRFES +T+LN+G +ELKSWRVFV F H E+LV A
Sbjct:    46 CNGVFVSYTHTKGSKIPPNDTANQPYRFESVITVLNHGRDELKSWRVFVKFAHREILVSA 105

Query:   102 TNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWTQMEVQIRLVGTQFGVGAPN 161
             +N VL+D  SSLP  V NGTVFAG P +DLKSA++TA D TQM+ ++ LVGTQFGV  PN
Sbjct:   106 SNAVLSD-GSSLPVSVENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPN 164

Query:   162 VPLPAN---------C-------NYVMHICCIKDSSFRSKITAENEFLPRQDGDITIMYD 205
             VPLP N         C         V+ +CCI D  + ++   +NEFLPR+DGD+TIMYD
Sbjct:   165 VPLPKNITLATDGWKCPKATQKGTNVLQVCCIPDPDYDNREIIDNEFLPRKDGDLTIMYD 224

Query:   206 VMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQ 265
             V+RS  ++Y AQV++ NHN L RLDNWKLS +WMRDEFIY MKGAYP +VD+SDC+ G Q
Sbjct:   225 VVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDSSDCVDGPQ 284

Query:   266 GQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIF 325
              + Y+D+DFS  L+C RRPT+IDLPPT+ ND+  G +PFCCRNGTILP +MDPSKS S+F
Sbjct:   285 AKHYQDLDFSNVLSCARRPTVIDLPPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVF 344

Query:   326 QMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRS 385
             QMQVYKMPPDLN S L PPQ W+I  GT NPD  Y+CGPPVRVSPS F D SGLP+   +
Sbjct:   345 QMQVYKMPPDLNISALSPPQNWRI-NGTLNPD--YKCGPPVRVSPSQFVDPSGLPSNRTA 401

Query:   386 IASWQVVCNITRPKQTRPRCCVSFSAFFNDSAIPCSTCACGCN-NIPSQTCSAIEXXXXX 444
              ASWQVVCNIT+PK   PRCCVSFSA+FNDS +PC TCACGC+ N  ++ CSA       
Sbjct:   402 FASWQVVCNITQPKDASPRCCVSFSAYFNDSIVPCKTCACGCSSNKAARACSATAPSLLL 461

Query:   445 XXXXXXXXFENRTVEAVEWAEIKRLSVPNPLPCGDNCGVRINWHLLSDYRGGWTARITLL 504
                     FENRT   V WA +K+  VPNP+PCGDNCGV INWHL +DYRGGWTAR+T+ 
Sbjct:   462 PQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDNCGVSINWHLATDYRGGWTARVTVF 521

Query:   505 NWGETDLADWFAAVQLDNAGPGFEQVYSFNGTTLA--GSNNTIFLQGISDFNNLAAEKDD 562
             NWGETD  DWF AVQ+ NA PGFE+ YSFN +T+   G NNTIF++G+   N L AE+D 
Sbjct:   522 NWGETDFVDWFTAVQMKNAAPGFEKAYSFNASTIGINGKNNTIFMEGLPGLNYLVAERDG 581

Query:   563 ANPRKHPRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECALPAVLPSSS 618
              NP K+PR+PG QQSV+ FTKK TP INV  GDGFP+KV FNG+EC+LP +LP  S
Sbjct:   582 ENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDGFPSKVFFNGEECSLPTILPMRS 637

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

TAIR\|locus:2093673 COBL8 "COBRA-like protein 8 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136452 COBL11 "COBRA-like protein 11 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GZ17	COBL7_ARATH	No assigned EC number	0.6325	0.8925	0.8668	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033094001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (651 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		642
pfam04833		169	pfam04833, COBRA, COBRA-like protein	2e-72

>gnl\|CDD\|218285 pfam04833, COBRA, COBRA-like protein	Back alignment and domain information

 Score =  230 bits (588), Expect = 2e-72
 Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 19/186 (10%)

Query: 214 YWAQVSISNHNTLRRLDN--WKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKD 271
           Y AQV+I N+   R +DN  WKLS EW + E I+ M+GAY    +  DC      +FYKD
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYT--TEQGDC-----SKFYKD 53

Query: 272 MDFSAALNCERRPTIIDLPPTRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYK 331
            DF     C++RPTI+DLPP    D  +     CC+NG +LP + DP+KS S FQM V K
Sbjct: 54  GDFPH--CCKKRPTIVDLPPGTPYDQQIAN---CCKNGVLLPRSQDPAKSVSAFQMSVGK 108

Query: 332 MPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPSTFPDSSGLPTESRSIASWQV 391
            PPD N+  + PPQ + I G  PNP   Y CGP VRVSP+ FPD  G    ++++A+WQV
Sbjct: 109 APPDTNRKTVRPPQNFTIKG--PNPG--YTCGPAVRVSPTRFPDPDG-RRTTQALATWQV 163

Query: 392 VCNITR 397
            CN ++
Sbjct: 164 TCNYSQ 169

Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		642
PF04833		169	COBRA: COBRA-like protein; InterPro: IPR006918 In	100.0
PF00553		101	CBM_2: Cellulose binding domain; InterPro: IPR0019	95.11
PF00553		101	CBM_2: Cellulose binding domain; InterPro: IPR0019	85.86

>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []	Back alignment and domain information

Probab=100.00  E-value=8.6e-79  Score=576.67  Aligned_cols=167  Identities=46%  Similarity=0.905  Sum_probs=159.5

Q ss_pred             eEEEEEEecccccCCCC--CceeeeeEcCCeeEEEecCceeeeecCCCccccccCcccccCCCCccccccCCCeeeeCCC
Q 038710          214 YWAQVSISNHNTLRRLD--NWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPP  291 (642)
Q Consensus       214 Y~A~VTi~N~q~yr~Id--gW~L~W~W~~~E~IwsM~GA~~t~~dqgdCs~g~~g~~yk~~dfs~ph~C~k~P~IvDLpP  291 (642)
                      |+|+|||+|||+|||||  ||+|||+|+|+||||+|+|||++  |||||+     +|||++  ++||||+|+|+||||||
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~t--dqgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp   71 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTT--DQGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP   71 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceec--cCCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence            99999999999999999  59999999999999999999999  599995     477775  56789999999999999


Q ss_pred             CCCCCccCCCcCccccCCeecCCCCCCCCCcceEEEEEeecCCCCCCCccCCCcCeEEeecCCCCCCCcccCCCeeeCCC
Q 038710          292 TRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPS  371 (642)
Q Consensus       292 ~~~~d~q~g~i~nCCr~Gvl~~~~qDps~S~SaFQm~Vgk~p~~~Nrt~v~pP~Nf~l~~~~pgPg~~YtCG~p~~V~PT  371 (642)
                      |++||+|+   +||||||||+||+|||+||+|+|||+||++||++|+++++||+||+|+|  ||||  |+||+|++|+||
T Consensus        72 ~~~~n~qi---~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~--~~pg--YtCg~~~~V~pT  144 (169)
T PF04833_consen   72 GTPYNQQI---GNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGG--PGPG--YTCGPPKRVSPT  144 (169)
T ss_pred             CCCCcccc---ccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcC--CCCC--cCCCCcceeCCc
Confidence            99999995   5899999999999999999999999999999999888899999999999  9999  999999999999


Q ss_pred             cccCCCCCceeeeEeEEeeeeEeeec
Q 038710          372 TFPDSSGLPTESRSIASWQVVCNITR  397 (642)
Q Consensus       372 ~f~dp~gl~r~tqAl~TWqVtCnySq  397 (642)
                      +|+|+|| ||.|||||||||||||||
T Consensus       145 ~f~~~~g-~r~t~A~~TWqvtC~ysq  169 (169)
T PF04833_consen  145 VFPDPDG-RRTTQALMTWQVTCNYSQ  169 (169)
T ss_pred             eeeCCCC-CEEEEEEEEEeEEEEeeC
Confidence            9999999 799999999999999997

The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3	Back alignment and domain information

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		642
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.1 bits (116), Expect = 5e-06
 Identities = 53/363 (14%), Positives = 107/363 (29%), Gaps = 103/363 (28%)

Query: 8   IFVITILLSLNSSHSLPTPQQQPPPPPSASLSTACNGVFLSYTHTTGYPIPPTNPANQAY 67
           IF +  L + NS  ++    Q+                 L Y     +     + +N   
Sbjct: 184 IFWLN-LKNCNSPETVLEMLQK-----------------LLYQIDPNWTSRSDHSSNIKL 225

Query: 68  RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLADVTSS--LPAFVGNGTVFAG 125
           R  S    +   L  L   + +     N LLV      L +V ++    AF         
Sbjct: 226 RIHS----IQAELRRLLKSKPYE----NCLLV------LLNVQNAKAWNAF--------- 262

Query: 126 LPETDLKSAV-ETARDWTQMEVQIRLVGTQFGVGAPNVPLPANCNYVMHICCIKDSS--- 181
               +L   +  T R     +       T   +   ++ L              D     
Sbjct: 263 ----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------------TPDEVKSL 306

Query: 182 FRSKITAENEFLPRQ--DGD---ITIMYDVMRS--SETDYWAQVSISNHNTLRR--LDNW 232
               +    + LPR+    +   ++I+ + +R   +  D W  V+     T+    L+  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV- 365

Query: 233 KLSGEWMRDEFIYGMKGAYPYVVD-TSD--CIFGRQGQFYKDMDFSAALN----CERRP- 284
            L     R   ++     +P      +    +          M     L+     E++P 
Sbjct: 366 -LEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 285 ----TI----IDLPPTRANDTNLGR-------VPFCCRNGTILPPNMDPSKSKSIFQMQV 329
               +I    ++L     N+  L R       +P    +  ++PP +D    +  +    
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHIG 478

Query: 330 YKM 332
           + +
Sbjct: 479 HHL 481

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		642
3ndz_E		107	Endoglucanase D; cellotriose, xylanase, carbohydra	95.32
1exg_A		110	EXO-1,4-beta-D-glycanase; cellulose binding domain	93.03
3icg_A		515	Endoglucanase D; cellulase, xylanase, carbohydrate	93.01
1e5b_A		87	Xylanase D; hydrolase, xylan binding domain, beta-	92.16
2cwr_A		103	Chitinase; chitin-binding domain, endoglucanase, h	90.9
1heh_C		88	Endo-1,4-beta-xylanase D; hydrolase(xylan degradat	84.58
1exg_A		110	EXO-1,4-beta-D-glycanase; cellulose binding domain	84.44
3ndz_E		107	Endoglucanase D; cellotriose, xylanase, carbohydra	84.29

>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*	Back alignment and structure

Probab=95.32  E-value=0.043  Score=48.57  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             EEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710          200 ITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV  254 (642)
Q Consensus       200 iTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~  254 (642)
                      .++.|.|.+--.+||.|.|||.|.-- ..|++|+|+|++..++-|-++..|..+.
T Consensus         3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~p~g~~it~~Wna~~s~   56 (107)
T 3ndz_E            3 VEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA   56 (107)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred             cEEEEEEcccCCCCEEEEEEEEeCCC-CcccCcEEEEEcCCCCEEecccceEEEe
Confidence            47899998888899999999999743 3478999999999999999999997653

PyMOL of 3ndz

>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A	Back alignment and structure

>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A	Back alignment and structure

>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A	Back alignment and structure

>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C	Back alignment and structure

>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A	Back alignment and structure

>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		642
d1exha_		110	Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce	96.47
d1hehc_		88	Endo-1,4-beta xylanase D, xylan binding domain, XB	93.69
d1e5ba_		87	Endo-1,4-beta xylanase D, xylan binding domain, XB	92.56
d1exha_		110	Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce	87.87

>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=96.47  E-value=0.0027  Score=54.35  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCCEEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710          197 DGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV  254 (642)
Q Consensus       197 ~GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~  254 (642)
                      .+..++.|.+-+| .+||.|.|||.|... .-|++|+|+|++..+|-|-++.+|..+.
T Consensus         5 p~~c~v~y~~n~W-~~Gf~~~vtVtN~~~-~~~~gW~v~~~~p~g~~i~~~Wna~~~~   60 (110)
T d1exha_           5 PAGCQVLWGVNQW-NTGFTANVTVKNTSS-APVDGWTLTFSFPSGQQVTQAWSSTVTQ   60 (110)
T ss_dssp             CCCEEEECCEEEC-SSCEEEEEEEEECSS-SCEESEEEEEECSSCCEEEEEESSEEEE
T ss_pred             CcceEEEEEEccC-CCCcEEEEEEEeCCC-CcccCcEEEEECCCCCEEeeeeceEEEe
Confidence            4567899988665 689999999999877 6688999999999999999999998654

PyMOL of d1exha_

>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure