Citrus Sinensis ID: 038739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQKATRRRRRRRN
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccEEEcccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccEEccccccEEEccccccccccccEEEccccccEEcccHHHHHcccccEEEccccccEEEccccccccccccccEEEccccEEEEEcccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccccccccHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccccHcHcccccccEEEEccccccccccHHHHHccccccEEEccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEcccccccccccHHHccccccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
ripsslgnlsKLLHLDLSLNElqgelpvsvgnlhsleeldlsanflssewpisignlsslkeldlsqnrffgelpismgnlgslkvldlsqngyfgelpTSIRNLFSLEKldlsfnnfsgefpwstgnfsslklldlrscgfwgkvphsignfTQLQylhlgsnnfsgdllgpignlrslEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYiglrscnltkfpnflqnqhhlrfmdlsdnriqgkvpkwlldpnmqnlngfnfshnlltgfdqhpvvlpgnkgplpvpppgtitylasnnsltgeipswiCNLNILESLVLSHnnlsgllpqclgnfsDELLVLDLqgnnlplskgcesgeaptnedhtegseeslfsgasDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQKATRRRRRRRN
Flexible Loop (DISEMBL)
ripsslgnlSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLtkatsdttsqklKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILeklgmqqkatrrrrrrrn
Low Complexity Region (SEG)
RIPsslgnlskllhldlslnelQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHpvvlpgnkgplpvpppgTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGASDWKIILTgyvgglvaglvlgFNFSTGIIRWILEKLGMQQKATrrrrrrrN
Disordered region (IsUnstruct)
**********KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN***************************SGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLG**************
Disordered Region (DISOPRED)
RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTN*************GASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQ****R******
Disordered Region (DISEMBL)
RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKG********************FSGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLG**************
Disordered Region (DISPRO)
*IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQKATRRRR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGASDWKIILTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQKATRRRRRRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.830	0.467	0.348	4e-43
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.947	0.397	0.296	2e-40
O82318	960	Probably inactive leucine	no	no	0.895	0.444	0.306	2e-38
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.788	0.345	0.330	3e-37
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.811	0.382	0.333	6e-37
C0LGV1	1135	LRR receptor-like serine/	no	no	0.792	0.333	0.351	6e-37
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.809	0.369	0.318	9e-37
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.790	0.301	0.349	1e-36
P93194	1109	Receptor-like protein kin	N/A	no	0.752	0.323	0.335	1e-36
O49318	1124	Probable leucine-rich rep	no	no	0.823	0.349	0.319	2e-36

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  176 bits (446), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 211/427 (49%), Gaps = 31/427 (7%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            IPSSLGNLS L  ++L  N+  GE+P S+GNL+ L  L L+ N L+ E P S+GNLS L
Sbjct: 125 EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRL 184

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             L+L  NR  G++P S+G+L  L+ L L+ N   GE+P+S+ NL +L  L L+ N   G
Sbjct: 185 VNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVG 244

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           E P S GN   L+++   +    G +P S  N T+L    L SNNF+      +    +L
Sbjct: 245 EVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNL 304

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
           E  +V+  +FSG    SL  +  L ++ L +N + G IE     +S K L+ L L  NRL
Sbjct: 305 EYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTK-LQDLILGRNRL 363

Query: 241 SVLTKATSDTTSQ--KLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLL 297
                   ++ S+   L+ + +   N T   P  +    +L  +DLS N ++G+VP  L 
Sbjct: 364 H---GPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACL- 419

Query: 298 DPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASN-NSLTGEIPSWI 356
                 LN    SHN  + F+                    I  L  N NS  G IP  I
Sbjct: 420 ----WRLNTMVLSHNSFSSFEN------------TSQEEALIEELDLNSNSFQGPIPYMI 463

Query: 357 CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN----LP--LSKGCESGEAPT 410
           C L+ L  L LS+N  SG +P C+ NFS  +  L+L  NN    LP   SK  E      
Sbjct: 464 CKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDV 523

Query: 411 NEDHTEG 417
           + +  EG
Sbjct: 524 SHNQLEG 530

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 223/495 (45%), Gaps = 43/495 (8%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           R P  L N+  L +LD+S N   GE+P  +GNL  LEEL L+ N L+ E P+ I    SL
Sbjct: 323 RFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSL 382

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             LD   N   G++P  +G + +LKVL L +N + G +P+S+ NL  LE+L+L  NN +G
Sbjct: 383 DVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNG 442

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
            FP      +SL  LDL    F G VP SI N + L +L+L  N FSG++   +GNL  L
Sbjct: 443 SFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKL 502

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
            A++++K N SG++   L  L  +  + L  N++ G++      +S  +L ++ LS N  
Sbjct: 503 TALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEG--FSSLVSLRYVNLSSNSF 560

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPN 300
           S     T       +      +      P  + N   L  ++L  NR+ G +P  L    
Sbjct: 561 SGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADL--SR 618

Query: 301 MQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP-----GTITYLASNNSLTGEIPSW 355
           +  L   +   N L+G                +PP         +    +N L+G IP  
Sbjct: 619 LPRLKVLDLGQNNLSG---------------EIPPEISQSSSLNSLSLDHNHLSGVIPGS 663

Query: 356 ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL----PLSKGCESGEAPTN 411
              L+ L  + LS NNL+G +P  L   S  L+  ++  NNL    P S G         
Sbjct: 664 FSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEF 723

Query: 412 EDHTE--------GSEESLFSGASDWK----IILTGYVGGLVAGLVLGFNFSTGIIRWIL 459
             +TE          E S   G    +    +I+   +G  +  L   F   T +++W  
Sbjct: 724 SGNTELCGKPLNRRCESSTAEGKKKKRKMILMIVMAAIGAFLLSLFCCFYVYT-LLKW-- 780

Query: 460 EKLGMQQKATRRRRR 474
            K   QQ  T  ++R
Sbjct: 781 RKKLKQQSTTGEKKR 795

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 150/490 (30%), Positives = 233/490 (47%), Gaps = 63/490 (12%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P  LGNLS+L  L L+ N+L G +PV +G + +L+ + L  N LS E P  IG LSSL
Sbjct: 184 HVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSL 243

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             LDL  N   G +P S+G+L  L+ + L QN   G++P SI +L +L  LD S N+ SG
Sbjct: 244 NHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSG 303

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           E P       SL++L L S    GK+P  + +  +L+ L L SN FSG +   +G   +L
Sbjct: 304 EIPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNL 363

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI---------------------- 218
             ++++  N +G++  +L +   LT L L  NS    I                      
Sbjct: 364 TVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSG 423

Query: 219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF----PNFLQN 274
           +L    T  + + FL LS N L        +  +  +  + +   ++ KF    P+F ++
Sbjct: 424 KLPRGFTKLQLVNFLDLSNNNLQ------GNINTWDMPQLEMLDLSVNKFFGELPDFSRS 477

Query: 275 QHHLRFMDLSDNRIQGKVPKWLLD-PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333
           +  L+ +DLS N+I G VP+ L+  P + +L   + S N +TG      V+P        
Sbjct: 478 K-RLKKLDLSRNKISGVVPQGLMTFPEIMDL---DLSENEITG------VIPRELSSC-- 525

Query: 334 PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ 393
                +    S+N+ TGEIPS      +L  L LS N LSG +P+ LGN  + L+ +++ 
Sbjct: 526 --KNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNI-ESLVQVNIS 582

Query: 394 GN----NLPLSKGCESGEAPTNEDHTEGSEESLFSG-----------ASDWKIILTGYVG 438
            N    +LP +    +  A   E + +   E+  SG              W +I+T    
Sbjct: 583 HNLLHGSLPFTGAFLAINATAVEGNIDLCSENSASGLRPCKVVRKRSTKSWWLIITSTFA 642

Query: 439 GLVAGLVLGF 448
             +A LV GF
Sbjct: 643 AFLAVLVSGF 652

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 192/402 (47%), Gaps = 26/402 (6%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
           N  KL+ LDLS N+ QG +P  +GN  SL  L +    L+   P S+G L  +  +DLS 
Sbjct: 242 NCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSD 301

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
           NR  G +P  +GN  SL+ L L+ N   GE+P ++  L  L+ L+L FN  SGE P    
Sbjct: 302 NRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIW 361

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
              SL  + + +    G++P  +     L+ L L +N F GD+   +G  RSLE +++  
Sbjct: 362 KIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLG 421

Query: 188 CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247
             F+G+I   L +  +L    L  N   G I   +     K LE + L  N+LS +    
Sbjct: 422 NRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASI--RQCKTLERVRLEDNKLSGVLPEF 479

Query: 248 SDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNG 306
            ++ S  L Y+ L S +     P  L +  +L  +DLS N++ G +P  L   N+Q+L  
Sbjct: 480 PESLS--LSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPEL--GNLQSLGL 535

Query: 307 FNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL---ASNNSLTGEIPSWICNLNILE 363
            N SHN L             +GPLP    G    L     +NSL G IPS   +   L 
Sbjct: 536 LNLSHNYL-------------EGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLS 582

Query: 364 SLVLSHNNLSGLLPQCLGN---FSDELLVLDLQGNNLPLSKG 402
           +LVLS NN  G +PQ L      SD  +  +  G  +P S G
Sbjct: 583 TLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVG 624

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  155 bits (393), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 145/435 (33%), Positives = 218/435 (50%), Gaps = 48/435 (11%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +PSS  NL KL  L LS N L GELP  +G L SLE   L  N      P   GN++SLK
Sbjct: 180 LPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLK 239

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            LDL+  +  GE+P  +G L SL+ L L +N + G +P  I ++ +L+ LD S N  +GE
Sbjct: 240 YLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGE 299

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P       +L+LL+L      G +P +I +  QLQ L L +N  SG+L   +G    L+
Sbjct: 300 IPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQ 359

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI----------------------E 219
            ++V+  +FSG+I S+L N   LT L L  N++ G I                       
Sbjct: 360 WLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGS 419

Query: 220 LDVLLTSWKNLEFLGLSLNRLS-VLTKATSDTTSQKLKYIGL-RSCNLTKFPNFLQNQHH 277
           + +     + L+ L L+ NRLS  +    SD+ S  L +I   R+   +  P+ + + H+
Sbjct: 420 IPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVS--LSFIDFSRNQIRSSLPSTILSIHN 477

Query: 278 LRFMDLSDNRIQGKVPKWLLD-PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP 336
           L+   ++DN I G+VP    D P++ NL   + S N LTG       +P +         
Sbjct: 478 LQAFLVADNFISGEVPDQFQDCPSLSNL---DLSSNTLTG------TIPSSIASC----E 524

Query: 337 GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396
             ++    NN+LTGEIP  I  ++ L  L LS+N+L+G+LP+ +G  S  L +L++  N 
Sbjct: 525 KLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGT-SPALELLNVSYNK 583

Query: 397 LPLSKGCESGEAPTN 411
           L       +G  P N
Sbjct: 584 L-------TGPVPIN 591

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 141/401 (35%), Positives = 199/401 (49%), Gaps = 23/401 (5%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           +IP  +GN   L  L L+  ++ G LPVS+G L  L+ L + +  LS E P  +GN S L
Sbjct: 218 KIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSEL 277

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             L L  N   G LP  +G L +L+ + L QN   G +P  I  + SL  +DLS N FSG
Sbjct: 278 INLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSG 337

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
             P S GN S+L+ L L S    G +P  + N T+L    + +N  SG +   IG L+ L
Sbjct: 338 TIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL 397

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
                 +    G I   L     L ALDL+QN   G   L   L   +NL  L L  N +
Sbjct: 398 NIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTG--SLPAGLFQLRNLTKLLLISNAI 455

Query: 241 S-VLTKATSDTTS-QKLKYIGLR-SCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLL 297
           S V+     + TS  +L+ +  R +  + K   FLQN   L F+DLS+N + G VP  L 
Sbjct: 456 SGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQN---LSFLDLSENNLSGPVP--LE 510

Query: 298 DPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWI 356
             N + L   N S+N L G+            PL +     +  L  S+N LTG+IP  +
Sbjct: 511 ISNCRQLQMLNLSNNTLQGY-----------LPLSLSSLTKLQVLDVSSNDLTGKIPDSL 559

Query: 357 CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            +L  L  L+LS N+ +G +P  LG+ ++ L +LDL  NN+
Sbjct: 560 GHLISLNRLILSKNSFNGEIPSSLGHCTN-LQLLDLSSNNI 599

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  155 bits (391), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 202/405 (49%), Gaps = 19/405 (4%)

Query: 7   GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
           G  SKL + DLS+N+L GE+P  +G+L +L+ L L  N L+   P  IG L+ + E+ + 
Sbjct: 139 GRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIY 198

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWST 126
            N   G +P S GNL  L  L L  N   G +P+ I NL +L +L L  NN +G+ P S 
Sbjct: 199 DNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSF 258

Query: 127 GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA 186
           GN  ++ LL++      G++P  IGN T L  L L +N  +G +   +GN+++L  +++ 
Sbjct: 259 GNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLY 318

Query: 187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS-VLTK 245
               +G I   L  +  +  L++++N   G +           LE+L L  N+LS  +  
Sbjct: 319 LNQLNGSIPPELGEMESMIDLEISENKLTGPVPDS--FGKLTALEWLFLRDNQLSGPIPP 376

Query: 246 ATSDTTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPN---M 301
             +++T  +L  + L + N T F P+ +     L  + L DN  +G VPK L D      
Sbjct: 377 GIANST--ELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIR 434

Query: 302 QNLNGFNFSHNLLTGFDQHPVV----LPGN--KGPLPV---PPPGTITYLASNNSLTGEI 352
               G +FS ++   F  +P +    L  N   G L          + ++ SNNS+TG I
Sbjct: 435 VRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAI 494

Query: 353 PSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           P  I N+  L  L LS N ++G LP+ + N  + +  L L GN L
Sbjct: 495 PPEIWNMTQLSQLDLSSNRITGELPESISNI-NRISKLQLNGNRL 538

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 149/426 (34%), Positives = 202/426 (47%), Gaps = 49/426 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSS 59
            IP    N+S+LL L L+ N L G LP S+  N  +LE+L LS   LS E P+ +    S
Sbjct: 302 EIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQS 361

Query: 60  LKELDLSQNRFFGELP------------------------ISMGNLGSLKVLDLSQNGYF 95
           LK+LDLS N   G +P                         S+ NL +L+ L L  N   
Sbjct: 362 LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLE 421

Query: 96  GELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ 155
           G+LP  I  L  LE L L  N FSGE P   GN +SLK++D+    F G++P SIG   +
Sbjct: 422 GKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKE 481

Query: 156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215
           L  LHL  N   G L   +GN   L  +++A    SG I SS   L  L  L L  NS +
Sbjct: 482 LNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQ 541

Query: 216 GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN---LTKFPNFL 272
           G   L   L S +NL  + LS NRL+        ++S    Y+     N     + P  L
Sbjct: 542 G--NLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS----YLSFDVTNNGFEDEIPLEL 595

Query: 273 QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLP 332
            N  +L  + L  N++ GK+P W L   ++ L+  + S N LTG             PL 
Sbjct: 596 GNSQNLDRLRLGKNQLTGKIP-WTLG-KIRELSLLDMSSNALTG-----------TIPLQ 642

Query: 333 VPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLD 391
           +     +T++  +NN L+G IP W+  L+ L  L LS N     LP  L N + +LLVL 
Sbjct: 643 LVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCT-KLLVLS 701

Query: 392 LQGNNL 397
           L GN+L
Sbjct: 702 LDGNSL 707

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 29/388 (7%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +PSSLGN++ L  L L+ N L G LPV++ NL +L  LD+  N L    P+   +   + 
Sbjct: 204 VPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQID 263

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            + LS N+F G LP  +GN  SL+          G +P+    L  L+ L L+ N+FSG 
Sbjct: 264 TISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGR 323

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P   G   S+  L L+     G++P  +G  +QLQYLHL +NN SG++   I  ++SL+
Sbjct: 324 IPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQ 383

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
           ++ + + N SG++   +  L QL +L L +N + G+I  D  L +  +LE L L+ N  +
Sbjct: 384 SLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQD--LGANSSLEVLDLTRNMFT 441

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPN 300
                    + +KLK + L    L    P+ L     L  + L +N ++G +P ++    
Sbjct: 442 GHIPPNL-CSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFV---E 497

Query: 301 MQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP------GTITYLASNNSLTGEIPS 354
            QNL  F+ S N  TG               P+PP        T  YL+SN  L+G IP 
Sbjct: 498 KQNLLFFDLSGNNFTG---------------PIPPSLGNLKNVTAIYLSSNQ-LSGSIPP 541

Query: 355 WICNLNILESLVLSHNNLSGLLPQCLGN 382
            + +L  LE L LSHN L G+LP  L N
Sbjct: 542 ELGSLVKLEHLNLSHNILKGILPSELSN 569

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 150/470 (31%), Positives = 216/470 (45%), Gaps = 77/470 (16%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IP  +  LS+L   ++  N+L G LP  +G+L++LEEL    N L+   P S+GNL+ L 
Sbjct: 149 IPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLT 208

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
                QN F G +P  +G   +LK+L L+QN   GELP  I  L  L+++ L  N FSG 
Sbjct: 209 TFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGF 268

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P   GN +SL+ L L      G +P  IGN   L+ L+L  N  +G +   +G L  + 
Sbjct: 269 IPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVM 328

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN--- 238
            I+ ++   SG+I   L  +S+L  L L QN   G+I  +  L+  +NL  L LS+N   
Sbjct: 329 EIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNE--LSKLRNLAKLDLSINSLT 386

Query: 239 --------------RLSVLTKATSDTTSQKLK-YIGLRSCNLT------KFPNFLQNQHH 277
                         +L +   + S    Q L  Y  L   + +      K P F+  Q +
Sbjct: 387 GPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN 446

Query: 278 LRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP-----------VVLPG 326
           L  ++L  NRI G +P  +L    ++L       N LTG  Q P           + L  
Sbjct: 447 LILLNLGSNRIFGNIPPGVL--RCKSLLQLRVVGNRLTG--QFPTELCKLVNLSAIELDQ 502

Query: 327 NK--GPLPVPPPGT----------------------------ITYLASNNSLTGEIPSWI 356
           N+  GPLP P  GT                            +T+  S+NSLTG IPS I
Sbjct: 503 NRFSGPLP-PEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEI 561

Query: 357 CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN----NLPLSKG 402
            N  +L+ L LS N+  G LP  LG+   +L +L L  N    N+P + G
Sbjct: 562 ANCKMLQRLDLSRNSFIGSLPPELGSL-HQLEILRLSENRFSGNIPFTIG 610

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
359485824	973	PREDICTED: receptor-like protein 12-like	0.798	0.391	0.441	1e-71
147818103	785	hypothetical protein VITISV_003452 [Viti	0.851	0.517	0.417	5e-69
359490156	886	PREDICTED: receptor-like protein 12-like	0.809	0.435	0.408	2e-68
147766212	925	hypothetical protein VITISV_018438 [Viti	0.838	0.432	0.414	3e-66
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.842	0.400	0.368	4e-65
224140505	993	predicted protein [Populus trichocarpa]	0.807	0.387	0.402	3e-63
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.796	0.197	0.430	2e-62
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.828	0.202	0.418	3e-62
224140513	947	predicted protein [Populus trichocarpa]	0.901	0.454	0.352	7e-59
224128143	923	predicted protein [Populus trichocarpa]	0.823	0.425	0.375	1e-58

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/396 (44%), Positives = 227/396 (57%), Gaps = 15/396 (3%)

Query: 22  LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81
           L GE P+ +  L SL+ L +  N     +       S LK LDL+   F GELP S+G L
Sbjct: 235 LHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELPTSIGRL 294

Query: 82  GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG 141
           GSL  LD+S   + G +P+S+ +L  L  LDLS N+FSG+ P S  N + L  L L    
Sbjct: 295 GSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSSMANLTQLIYLSLSWND 354

Query: 142 FWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL 201
           F       +G  T+L YL+L   N  G++   + N+  L  ++++    SGQI SSL  L
Sbjct: 355 FNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSSLFEL 414

Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR 261
             L  L L  N   G +EL  LL+  KNL +L LS NRLS L+   ++ T  K K++GL 
Sbjct: 415 VNLQGLYLLSNYLNGTVELQ-LLSKLKNLIYLQLSDNRLSFLSYTRTNATLPKFKHLGLG 473

Query: 262 SCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321
           SCNLT+FP+FLQNQH L  + LS+N+I G +PKW+ + + + L     S N LTGFDQ P
Sbjct: 474 SCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRP 533

Query: 322 VVLPGNK------------GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSH 369
            VLP +K            GPLPVPPP T+ YL S N LTGEI   ICN+  LE L LS 
Sbjct: 534 FVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLSS 593

Query: 370 NNLSGLLPQCLGNFSDELLVLDLQGNNL--PLSKGC 403
           NNLSG +PQCL NFS  L VLDL  N+L  P+ + C
Sbjct: 594 NNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEIC 629

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818103|emb|CAN73568.1| hypothetical protein VITISV_003452 [Vitis vinifera]

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 186/446 (41%), Positives = 242/446 (54%), Gaps = 40/446 (8%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLE------------------------ 37
           IP  L NLS L  L L    L GE P+++  L SL+                        
Sbjct: 33  IPHELANLSSLTTLFLRECGLHGEFPMNIFQLPSLQLLSVRYNPDLIGYLPEFQETSPLK 92

Query: 38  ELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGE 97
            LDL     S E P SIG L SL ELD+S   F G +P  +G L  L  LDLS N + G+
Sbjct: 93  LLDLGGTSFSGELPTSIGRLVSLTELDISSCNFTGLVPSPLGYLSQLSYLDLSNNSFSGQ 152

Query: 98  LPTSIRNLFSLEKLDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156
           +P+ + NL  L  LDLS NNFS G   W  G  + L +L LR     G++P S+ N +QL
Sbjct: 153 IPSFMANLTRLTYLDLSLNNFSVGTLAW-LGEQTKLTVLYLRQINLIGEIPFSLVNMSQL 211

Query: 157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG 216
             L L  N  SG ++  + NL  L  +++   N  G I SSL  L  L +L +  NS  G
Sbjct: 212 TTLTLADNQLSGQIISWLMNLTQLTVLDLGTNNLEGGIPSSLLELVNLQSLSVGGNSLNG 271

Query: 217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQH 276
            +EL++LL      +F  LS NRLS+L    ++ T  K K +GL SCNLT+F +FL+NQ 
Sbjct: 272 TVELNMLLKLKNLTDF-QLSDNRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFSDFLRNQD 330

Query: 277 HLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK-------- 328
            L  + L++N+I G +PKW+ + + +NL   + S NLLT FDQHPVVLP ++        
Sbjct: 331 ELVVLSLANNKIHGLIPKWIWNISQENLGTLDLSGNLLTXFDQHPVVLPWSRLSILMLDS 390

Query: 329 ----GPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNF 383
               GPLP+PPP TI Y + S N LTGEI   ICN++ L  L LS NNLSG +PQCL N 
Sbjct: 391 NMLQGPLPIPPPSTIEYYSVSRNKLTGEIWPLICNMSSLMLLDLSRNNLSGRIPQCLANL 450

Query: 384 SDELLVLDLQGNNLPLSKGCESGEAP 409
           S  L VLDL  NNL L +    G+ P
Sbjct: 451 SKSLSVLDLGSNNLDLGENQFQGQIP 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 240/446 (53%), Gaps = 60/446 (13%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSAN-FLSSEWP---ISIGN 56
           +IP  +G LS+L  LDLS +   G++P  +  L  L  L+LSAN  L  + P     + N
Sbjct: 115 QIPFGVGQLSRLRSLDLSSDRFAGQIPSELLALSKLVFLNLSANPMLQLQKPGLRYLVQN 174

Query: 57  LSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116
           L+ LKEL L Q      +P  + NL SL+ L L + G  GE P +I  L SL+ L + +N
Sbjct: 175 LTHLKELHLRQVNISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYN 234

Query: 117 ------------------------NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGN 152
                                   +FSGE P S G   SL  LD+ SC F G VP  +G+
Sbjct: 235 PDLIGYLPEFQETSPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLGH 294

Query: 153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
            +QL YL L +N FSG +   + NL  L  ++++  N  G I +SL  L  L  L +A N
Sbjct: 295 LSQLSYLDLSNNFFSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVADN 354

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272
           S  G +EL                 NRLS+L    ++ T  K K +GL SCNLT+FP+FL
Sbjct: 355 SLNGTVEL-----------------NRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFL 397

Query: 273 QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK---- 328
           QNQ  L  + LSDN+I G +PKW+ + + +NL   + S NLLTGF+QHPVVLP +K    
Sbjct: 398 QNQDELEVLFLSDNKIHGPIPKWMWNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSIL 457

Query: 329 --------GPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 379
                   GPLP+PPP TI Y + S N L GEI   ICN++ L  L LS NNLSG +PQC
Sbjct: 458 ELDSNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLICNMSSLILLDLSSNNLSGRIPQC 517

Query: 380 LGNFSDELLVLDLQGNNL--PLSKGC 403
           L N S  L +LDL  NNL  P+ + C
Sbjct: 518 LANLSKSLFILDLGSNNLDGPIPQTC 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 183/442 (41%), Positives = 238/442 (53%), Gaps = 42/442 (9%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLE------------------------ 37
           IP  L NLS L  L L    L GE P+++  L SL+                        
Sbjct: 170 IPHELANLSSLTTLFLRECGLHGEFPMNIFQLPSLKILSVSYNPDLIGYLPEFQETSPLK 229

Query: 38  ELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGE 97
           EL L     S E P SIG L SL ELD+S   F G +P ++G+L  L  LDLS N + G 
Sbjct: 230 ELHLYGTSFSGELPTSIGRLGSLTELDISSCNFTGLVPSTLGHLPQLSSLDLSNNSFSGL 289

Query: 98  LPTSIRNLFSLEKLDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156
           +P+S+ NL  L  L LSFNNFS G   W  G  + L  L LR     G++P S+ N +QL
Sbjct: 290 IPSSMANLTQLTFLVLSFNNFSIGTLAW-LGEQTKLTALHLRQINLIGEIPFSLVNMSQL 348

Query: 157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG 216
             L L  N  SG +   + NL  L  +++   N  G I SSL  L  L +L +  NS  G
Sbjct: 349 TTLTLADNQLSGQIPSWLMNLTQLTVLDLGANNLEGGIPSSLFELVNLQSLSVGGNSLNG 408

Query: 217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQH 276
            +EL++LL       F  LS NRLS+L    ++ T  K K +GL SCNLT+FP+FL+NQ 
Sbjct: 409 TVELNMLLKLKNLTSF-QLSGNRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLRNQD 467

Query: 277 HLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK-------- 328
            L  + L++N+I G +PKW+ + + +NL   + S NLLT FD HPVVLP ++        
Sbjct: 468 ELAVLSLANNKIHGLIPKWIWNISQENLGTLDLSXNLLTXFDXHPVVLPWSRLSILMLDS 527

Query: 329 ----GPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNF 383
               GPLP+PPP T  Y + S N L GEI   ICN++ L  L LS NNLSG +PQCL N 
Sbjct: 528 NMLQGPLPIPPPSTXEYYSVSRNKLIGEISPLICNMSSLMILDLSSNNLSGRIPQCLANL 587

Query: 384 SDELLVLDLQGNNL--PLSKGC 403
           S  L VLDL  N+L  P+ + C
Sbjct: 588 SKSLSVLDLGSNSLDGPIPQTC 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 254/515 (49%), Gaps = 113/515 (21%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSAN-FLSSEWP---ISIGNL 57
           IP  +G LS+L  LDLS +   G++P  +  L  L  LDLSAN  L  + P     + NL
Sbjct: 139 IPFGVGQLSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANPMLQLQKPGLRNLVQNL 198

Query: 58  SSLKELDLSQNRFF------------------------GELPISMGNLGSL--------- 84
           + LK+L LSQ   F                        GE P+ +  L SL         
Sbjct: 199 THLKKLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYLSVRYNP 258

Query: 85  ---------------KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNF 129
                          K+L L+   ++GELP SI +L SL +LD+S  NF+  FP    + 
Sbjct: 259 DLIGYLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTELDISSCNFTRLFPSPLAHI 318

Query: 130 SSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189
             L LLDL +  F G++P  + N TQL YL L SN+FS   L  +G    L  + + + N
Sbjct: 319 PQLSLLDLSNNSFSGQIPSFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKLTYLYLDQMN 378

Query: 190 FSGQITSSLRNLSQLTALDLAQNSYRGMI-----------ELDV---------------- 222
            +G+I SSL N+S+LT L L++N   G I           EL +                
Sbjct: 379 LTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLEGPIPSSLFEL 438

Query: 223 --------------------LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS 262
                               +L+  KNL  L LS NRLS+L+   ++ T    K +GL S
Sbjct: 439 VNLQSLYLHSNYLTGTVELHMLSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFKLLGLGS 498

Query: 263 CNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV 322
           CNLT+FP+FLQNQ  L  + LSDN+I G +PKW+ + + + L     S N LTGFDQ PV
Sbjct: 499 CNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTGFDQRPV 558

Query: 323 VLPGNK------------GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHN 370
           VLP ++            GPLP+PPP TI Y    N LTGEI   ICN++ L+ L L+ N
Sbjct: 559 VLPWSRLYSLQLDFNMLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMSSLKLLDLARN 618

Query: 371 NLSGLLPQCLGNFSDELLVLDLQGNNL--PLSKGC 403
           NLSG +PQCL NFS  L VLDL  N+L  P+ + C
Sbjct: 619 NLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTC 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 223/412 (54%), Gaps = 27/412 (6%)

Query: 36  LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYF 95
           LE L L+    S + P SI N  S+KELD+++  F G +P S+GNL  L  LDLS N + 
Sbjct: 268 LEILYLTGTSFSGKLPASIRNHKSMKELDVAECYFSGVIPSSLGNLTKLNYLDLSDNFFS 327

Query: 96  GELPTSIRNLFSLEKLDLSFNNF-SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
           G++P S  NL  L  L LSFNNF SG   W  GN + L  +DLR    +G +P S+ N T
Sbjct: 328 GKIPPSFVNLLQLTNLSLSFNNFTSGTLDW-LGNLTKLNRVDLRGTDSYGDIPSSLRNLT 386

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
           QL +L L  N  +G +   IGN   L  + +      G I  S+  L  L  L+L  N +
Sbjct: 387 QLTFLALNENKLTGQIPSWIGNHTQLILLGLGANKLHGPIPESIYRLQNLGVLNLEHNLF 446

Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN 274
            G +EL+  L  ++NL  L LS N LS+L    +     KLK + L  CNL +FP+FL++
Sbjct: 447 SGTLELNFPL-KFRNLFSLQLSYNNLSLLKSNNTIIPLPKLKILTLSGCNLGEFPSFLRD 505

Query: 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN------- 327
           Q+HL  +DL+DN+++G++PKW ++ +   L     + NLLTGFDQ   VLP N       
Sbjct: 506 QNHLGILDLADNKLEGRIPKWFMNMSTTTLEDLYLARNLLTGFDQSFDVLPWNNLRSLQL 565

Query: 328 -----KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 382
                +G LP+PPP    Y   NN LTGEIP  ICNL  L  L LS+NNLSG L  CLGN
Sbjct: 566 HSNKLQGSLPIPPPEIYAYGVQNNKLTGEIPIVICNLISLSVLDLSNNNLSGKLTHCLGN 625

Query: 383 FSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGSEESLFSGAS---DWKI 431
            S    VL+L  N+        SG+ P  +  T G    +   +    +WKI
Sbjct: 626 ISSTASVLNLHNNSF-------SGDIP--DTFTSGCSLKVIDFSENKLEWKI 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 171/397 (43%), Positives = 229/397 (57%), Gaps = 17/397 (4%)

Query: 15   LDLSLNE-LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
            LDL  N  L G LP    N   L+ LDL     S + P SIG LSSLKELD+    F G 
Sbjct: 1185 LDLMSNRYLTGHLP-EFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKELDICSCNFSGX 1243

Query: 74   LPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS-GEFPWSTGNFSSL 132
            +P ++GNL  L  LDLS N + G+L +S+ NL  L  LD S N+FS G   W     + L
Sbjct: 1244 VPTALGNLTQLAHLDLSXNSFKGQLTSSLXNLIHLNFLDXSRNDFSVGTLSWIV-KLTKL 1302

Query: 133  KLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192
              LDL      G++  S+ N T L YL+L  N  +G +   +GNL  L+ + +   N  G
Sbjct: 1303 TALDLEKTXLNGEILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLTLLKXLGLGYNNLEG 1362

Query: 193  QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTS 252
             I SS+  L  L  L L  N   G +EL+ +L   KNL  LGLS N LS+LT  + + + 
Sbjct: 1363 PIPSSIFELMNLDTLFLRANKLSGTVELN-MLVKLKNLHXLGLSHNDLSLLTNNSLNGSL 1421

Query: 253  QKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
             +L+ +GL SCNL++FP+FL+NQ  L+F+ LSDN+I G++PKW+ +   + L   + S+N
Sbjct: 1422 PRLRLLGLASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNN 1481

Query: 313  LLTGFDQHPVVLP------------GNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLN 360
            LLT F+Q PVVLP              +G LPVPP     Y   NN L G+ PS IC+L+
Sbjct: 1482 LLTXFEQAPVVLPWITLRVLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPSLICSLH 1541

Query: 361  ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             L  L LS+NNLSG++PQCL + SD L VL+L+GNN 
Sbjct: 1542 HLHILDLSNNNLSGMIPQCLXDSSDSLSVLNLRGNNF 1578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 172/411 (41%), Positives = 234/411 (56%), Gaps = 16/411 (3%)

Query: 1    RIPSSLGNLSKLLHLDLSLNE-LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSS 59
              P  +  L  L  LDL  N  L G LP    N   L+ LDL     S + P SIG LSS
Sbjct: 1192 EFPMGIFKLPSLELLDLMSNRYLTGHLP-EFHNASHLKYLDLYWTSFSGQLPASIGFLSS 1250

Query: 60   LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
            LKELD+    F G +P ++GNL  L  LDLS N + G+L +S+ NL  L  LD+S N+FS
Sbjct: 1251 LKELDICSCNFSGMVPTALGNLTQLTHLDLSSNSFKGQLTSSLTNLIHLNFLDISRNDFS 1310

Query: 120  -GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
             G   W     +    L+L      G++  S+ N T L YL+L  N  +G +   +GNL 
Sbjct: 1311 VGTLSWIIVKLTKFTALNLEKTNLIGEILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLT 1370

Query: 179  SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN 238
             L+ + +   N  G I SS+  L  L  L L  N   G +EL++L+   KNL  LGLS N
Sbjct: 1371 LLKTLGLGYNNLEGPIPSSIFELMNLDTLILRANKLSGTVELNMLV-KLKNLHKLGLSHN 1429

Query: 239  RLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD 298
             LS+LT  + + +  +L+ +GL SCNL++FP+FL+NQ  L+F+ LSDN+I G++PKW+ +
Sbjct: 1430 DLSLLTNNSLNGSLPRLRLLGLASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWN 1489

Query: 299  PNMQNLNGFNFSHNLLTGFDQHPVVLP------------GNKGPLPVPPPGTITYLASNN 346
               + L   + S+NLLT F+Q PVVLP              +G LPVPP     Y   NN
Sbjct: 1490 MGKETLWVMDLSNNLLTCFEQAPVVLPWITLRVLELSYNQLQGSLPVPPSSISDYFVHNN 1549

Query: 347  SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             L G+ PS IC+L+ L  L LS+NNLSG++PQCL + SD L VL+L+GNN 
Sbjct: 1550 RLNGKFPSLICSLHHLHILDLSNNNLSGMIPQCLSDSSDSLSVLNLRGNNF 1600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 252/502 (50%), Gaps = 72/502 (14%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFL-------------- 46
           +IPS + NLS+L  LDLS +   G++P  +  L  L  LDL  N L              
Sbjct: 134 KIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVSLDLGWNSLKLQKPGLEHLVKAL 193

Query: 47  -------------------------------------SSEWPISIGNLSSLKELDLSQNR 69
                                                S + P SIGNL SLKE D+    
Sbjct: 194 INLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLAGTSFSGKLPESIGNLKSLKEFDVGDCN 253

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF-SGEFPWSTGN 128
           F G +P S+GNL  L  LDLS N + G++P++  NL  +  L LSFNNF  G   W  GN
Sbjct: 254 FSGVIPSSLGNLTKLNYLDLSFNFFSGKIPSTFVNLLQVSYLSLSFNNFRCGTLDW-LGN 312

Query: 129 FSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188
            ++LK++DL+    +G +P S+ N TQL  L L  N  +G +   IGN   L ++ +   
Sbjct: 313 LTNLKIVDLQGTNSYGNIPSSLRNLTQLTALALHQNKLTGQIPSWIGNHTQLISLYLGVN 372

Query: 189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248
              G I  S+  L  L  LDLA N + G ++L++LL  ++NL  L LS   LS+L    +
Sbjct: 373 KLHGPIPESIYRLQNLEQLDLASNFFSGTLDLNLLL-KFRNLVSLQLSYTNLSLLNSNNA 431

Query: 249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFN 308
                KL+ + L   NL +FP+FL++Q+HL  +DL+D+++ G++PKW ++ +   L    
Sbjct: 432 TIPQSKLELLTLSGYNLGEFPSFLRDQNHLELLDLADDKLDGRIPKWFMNMSTITLEALC 491

Query: 309 FSHNLLTGFDQHPVVLP----------GNK--GPLPVPPPGTITYLASNNSLTGEIPSWI 356
            + NLLTGF+Q   VLP           NK  G LP+PPP    Y   NN LTGEIP  I
Sbjct: 492 LTGNLLTGFEQSFDVLPWKNLRSLQLYSNKLQGSLPIPPPAIFEYKVWNNKLTGEIPKVI 551

Query: 357 CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN----NLP--LSKGCESGEAPT 410
           C+L  L  L LS+NNLSG LP CLGN S    VL+L+ N    ++P   + GC       
Sbjct: 552 CDLTSLSVLELSNNNLSGKLPPCLGNKSRTASVLNLRHNSFSGDIPETFTSGCSLRVVDF 611

Query: 411 NEDHTEGSEESLFSGASDWKII 432
           +++  EG      +  ++ +I+
Sbjct: 612 SQNKLEGKIPKSLANCTELEIL 633

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 231/442 (52%), Gaps = 49/442 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVG----------------------------- 31
           ++PS L  LS L +L+LS +   GE+P+ +                              
Sbjct: 127 QVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARKLLELGSFDL 186

Query: 32  -----NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV 86
                N   LE+LDLS+  +SS  P ++ NLSSL  L+L      G +P S G+L  L  
Sbjct: 187 RRLAQNFTGLEQLDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSSFGDLTKLGY 246

Query: 87  LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF-SGEFPWSTGNFSSLKLLDLRSCGFWGK 145
           L+L  N + G++P S+ NL  LE L LS N+F S    W  GN + ++ L L      G+
Sbjct: 247 LNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSW-LGNLNKIRALHLSDINLVGE 305

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
           +P S+ N T++  LHL +N  +G +   I NL  L  +++      G I  S+  L  L 
Sbjct: 306 IPLSLRNMTRIIQLHLSNNRLTGKIPLWISNLTQLTLVHLRHNELQGPIPESMSKLVNLE 365

Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
            L L  N   G IE   +  S K+L  L +  N L+VLT  + +TT  K KY+ L  CNL
Sbjct: 366 ELKLEYNHLSGTIEFS-MFASLKHLTMLQIRRNNLTVLTNISDNTTLPKFKYLALGDCNL 424

Query: 266 TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQ------ 319
           ++FP+FL++Q  L ++ L  NRIQG++PKWL D   + L+     +NL +GF+Q      
Sbjct: 425 SEFPDFLRSQDELIYLHLGRNRIQGQIPKWLGDIGHKTLSILILRNNLFSGFEQSWELSL 484

Query: 320 ----HPVVLPGNK--GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 373
                 + L  NK  G LP+PPP  I Y  SNNSLTGEI   +CNL  L  L LS+N LS
Sbjct: 485 LTKLQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCNLRSLGFLDLSYNKLS 544

Query: 374 GLLPQCLGNFSDELLVLDLQGN 395
           G+ P CLG+FSD LLVL+L  N
Sbjct: 545 GMFPNCLGDFSDSLLVLNLSNN 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.756	0.377	0.349	4.4e-49
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.750	0.400	0.370	5.4e-49
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.767	0.388	0.357	6.5e-48
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.765	0.417	0.347	3.5e-47
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.769	0.360	0.346	6.1e-47
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.771	0.374	0.330	3.1e-46
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.765	0.420	0.336	1.1e-45
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.781	0.518	0.340	4.7e-44
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.687	0.461	0.339	1.5e-43
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.712	0.420	0.366	2.1e-43

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 4.4e-49, P = 4.4e-49
 Identities = 140/401 (34%), Positives = 201/401 (50%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             G++P S+GNL +L  LDLS N  S + P  IGNLS L  L L  N F GE+P S GNL  
Sbjct:   231 GQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQ 290

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L  L +  N   G  P  + NL  L  L LS N F+G  P +  + S+L   D     F 
Sbjct:   291 LTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFT 350

Query:   144 GKVPHSIGNFTQLQYLHLGSNNFSGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
             G  P  +     L Y+ L  N   G L  G I +  +L  +++   NF G I SS+  L 
Sbjct:   351 GTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLV 410

Query:   203 QLTALDLAQNSYRG-------------------------MIELDVLLTSWKNLEFLGLSL 237
             +L  LD++  + +G                          I+L+  L+ +K L  L LS 
Sbjct:   411 KLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSG 470

Query:   238 NRLSVLTKAT-SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWL 296
             N +S   K++ SD  SQ ++ + L  C +T+FP F++ QH L F+D+S+N+I+G+VP WL
Sbjct:   471 NHVSATNKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWL 530

Query:   297 LDPNMQNLNGFNFSHNLLTGFDQHXXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWI 356
                 +  L   N S+N L GF +                   +  L SNN+  G+IPS+I
Sbjct:   531 W--RLPILYYVNLSNNTLIGFQRPSKPEPSL-----------LYLLGSNNNFIGKIPSFI 577

Query:   357 CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             C L  L +L LS NN +G +P+C+G+    L VL+L+ N+L
Sbjct:   578 CGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHL 618

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 5.4e-49, P = 5.4e-49
 Identities = 141/381 (37%), Positives = 203/381 (53%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             G++P S+GNL  L  L LS N    E P S GNL+ L  LD+S N+  G  P  + NL  
Sbjct:   192 GQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTG 251

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L V+ LS N + G LP +I +L +L     S N F+G FP       SL  L L      
Sbjct:   252 LSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLK 311

Query:   144 GKVPH-SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ-ITSSLRNL 201
             G +   +I + + LQYL++GSNNF G +   I  L +L+ + ++  N   + +  S+   
Sbjct:   312 GTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCRPVDFSI--F 369

Query:   202 SQLTALDLAQNSY--RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT--SDTTSQKLKY 257
             S L +LD  + SY     I+L+ +L  +K L  L LS N +S   K++  SD  SQ ++ 
Sbjct:   370 SHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQS 429

Query:   258 IGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGF 317
             + L  C +T FP  L+ QH L F+D+S+N+I+G+VP WL    + NL   N S+N   GF
Sbjct:   430 LYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLW--TLPNLFYLNLSNNTFIGF 487

Query:   318 DQHXXXXXXXXXXXXXXXXXTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 376
              +                  ++ YL  SNN+ TG+IPS+IC L  L +L LS NN SG +
Sbjct:   488 QRPTKPEP------------SMAYLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSGSI 535

Query:   377 PQCLGNFSDELLVLDLQGNNL 397
             P+C+ N    L  L+L+ NNL
Sbjct:   536 PRCMENLKSNLSELNLRQNNL 556

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 6.5e-48, P = 6.5e-48
 Identities = 136/380 (35%), Positives = 198/380 (52%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             G++P S+GNL  L  L LS N    E P S GNL+ L  L +  N+  G +PIS+ NL  
Sbjct:   235 GQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTR 294

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L  L LS N + G +P +I  L +L   + S N F+G  P S  N   L  LDL      
Sbjct:   295 LSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLN 354

Query:   144 GKVPH-SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ-ITSSLRNL 201
             G +   +I + + LQYL +GSNNF G +   +    +L   +++  N   + +  S+   
Sbjct:   355 GTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSI--F 412

Query:   202 SQLTALDLAQNSY--RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT--SDTTSQKLKY 257
             S L +LD  + SY     I+L+ +L  +K L  L +S N +S   K++  SD  SQ ++ 
Sbjct:   413 SHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQS 472

Query:   258 IGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGF 317
             + L  C +T FP  L+ QH L F+D+S+N+I+G+VP WL    + NL   N S+N    F
Sbjct:   473 LYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLW--TLPNLFYLNLSNNTFISF 530

Query:   318 DQHXXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 377
             +                    I   ASNN+ TG+IPS+IC L  L +L LS NN +G +P
Sbjct:   531 ES----SSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIP 586

Query:   378 QCLGNFSDELLVLDLQGNNL 397
             +C+      L VL+L+ NNL
Sbjct:   587 RCMEKLKSTLFVLNLRQNNL 606

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 3.5e-47, P = 3.5e-47
 Identities = 131/377 (34%), Positives = 199/377 (52%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             GE+P S+GNL  L  LDLS N    E P S G+L+ L  L L  N+  G LP+ + NL  
Sbjct:   173 GEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTK 232

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L  + LS N + G LP +I +L  LE    S NNF G  P S     S+ L+ L +    
Sbjct:   233 LSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLS 292

Query:   144 GKVPH-SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNL 201
             G +   +I + + L  L LG NN  G +   I  L +L  ++++  N  GQ+  ++  +L
Sbjct:   293 GTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHL 352

Query:   202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT-SDTTSQKLKYIGL 260
               L  L L+ ++    I+L+ +L+ +K L  L LS N + V  K++ SD     +  + L
Sbjct:   353 KLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNL 412

Query:   261 RSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH 320
               C +T+FP+ L+ Q  +R +D+S+N+I+G+VP WLL   +Q L   + S+N   GF++ 
Sbjct:   413 SGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLL---LQ-LEYMHISNNNFIGFERS 468

Query:   321 XXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 380
                                 +  SNN+ +G+IPS+IC+L  L  L LS+NN SG +P C+
Sbjct:   469 TKLEKTVVPKPSMKH-----FFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCV 523

Query:   381 GNFSDELLVLDLQGNNL 397
             G F   L  L+L+ N L
Sbjct:   524 GKFKSTLSDLNLRRNRL 540

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.1e-47, P = 6.1e-47
 Identities = 136/392 (34%), Positives = 203/392 (51%)

Query:    23 QGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82
             +G LPV   N +SL +L +     S   P SI +L +L  L LS + F G++P S+GNL 
Sbjct:   289 RGNLPVFHEN-NSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLS 347

Query:    83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
              L  L LS N   GE+P+SI NL  L    +  N  SG  P +  N + L  + L S  F
Sbjct:   348 HLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQF 407

Query:   143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
              G +P SI   ++L++     N F G +L P+  + SL  I+++    +  +   + N+ 
Sbjct:   408 TGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLV--GIENIF 465

Query:   203 QLTALD---LAQNSYRGMIELDVLLTSWKNLEFLG-LSLNRLSV-LTKATSDTTSQKLKY 257
              L  L+   +   +Y  +  LD  L  + +L+ LG L ++R+ +  T  TSD  S  L+Y
Sbjct:   466 MLPNLETFYIYHYNYTKVRPLD--LNVFSSLKQLGTLYISRIPISTTNITSDFPSN-LEY 522

Query:   258 IGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGF 317
             + LRSCN+T FP F++   +L+ +DLS+N+I+G+VP WL    M  LN  + S+N L+GF
Sbjct:   523 LSLRSCNITDFPEFIRKGRNLQILDLSNNKIKGQVPDWLW--RMPTLNSVDLSNNSLSGF 580

Query:   318 DQHXXXXXXXXXXXXXXXXX-----------TITYLA-SNNSLTGEIPSWICNLNILESL 365
                                            ++ Y + SNN+ TG+IP  IC L+ LE L
Sbjct:   581 HVSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEIL 640

Query:   366 VLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
              LS+NNL+G LP CL      L  LDL+ N+L
Sbjct:   641 DLSNNNLNGSLPWCLETLMSSLSDLDLRNNSL 672

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.1e-46, P = 3.1e-46
 Identities = 125/378 (33%), Positives = 202/378 (53%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             GE+P S+GNL  L    LS N +  E P S GNL+ L  L++  N+  G  PI++ NL  
Sbjct:   270 GEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRK 329

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L  L L  N   G LP+++ +L +L+  D + N+F+G  P S  N  SLK + L +    
Sbjct:   330 LSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLN 389

Query:   144 GKVPH-SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNL 201
             G +   +I +++ L  L LG+NNF G +   I  L +L+ ++++  N  G +  ++  +L
Sbjct:   390 GSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHL 449

Query:   202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL-KYIGL 260
               +  L+L+  +    I++  +L+S+K L+ L LS + +S   K++   +S  L   + L
Sbjct:   450 KSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYL 509

Query:   261 RSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH 320
               C +T+FP FL++Q  +  +D+S+N+I+G+VP WL    +  LN  N S+N   GF++ 
Sbjct:   510 SGCGITEFPKFLRSQELMLTLDISNNKIKGQVPGWLW--MLPVLNYVNLSNNTFIGFERS 567

Query:   321 XXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 380
                                    SNN+ TG IPS+IC L  L +L  S+N  +G +P C+
Sbjct:   568 TKLGLTSIQEPPAMRQL----FCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCM 623

Query:   381 GNF-SDELLVLDLQGNNL 397
             GN  S  L  L+L+ N L
Sbjct:   624 GNIQSPYLQALNLRHNRL 641

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.1e-45, P = 1.1e-45
 Identities = 128/380 (33%), Positives = 205/380 (53%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             G +P S+GNL  L  LDLS N    E P   GN++ L  L +  N   G  P+S+ NL  
Sbjct:   157 GGIPSSIGNLSQLTFLDLSGNEFVGEMPF-FGNMNQLTNLYVDSNDLTGIFPLSLLNLKH 215

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L  L LS+N + G LP+++ +L +LE  +   N F+G  P S    +SL  ++LR+    
Sbjct:   216 LSDLSLSRNQFTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIASLTSINLRNNQLN 275

Query:   144 GKVPH-SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNL 201
             G +   +I + + L  L + +NNF G +   I    +L+ ++++  N  G +  S+  NL
Sbjct:   276 GTLEFGNISSPSTLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNL 335

Query:   202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEF-LGLSLNRLSVLTK-ATSDT-TSQKLKYI 258
               L  L+L+  +    I+L+ L +S  N  + + LS N +S  TK + +D   +Q +  +
Sbjct:   336 KSLQLLNLSHLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQL 395

Query:   259 GLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD 318
              L  C +T+FP  L++QH +  +D+S+N+I+G+VP WL    +  L   + S+N+ TGF+
Sbjct:   396 YLSGCGITEFPELLRSQHKMTNLDISNNKIKGQVPGWLW--TLPKLIFVDLSNNIFTGFE 453

Query:   319 QHXXXXXXXXXXXXXXXXXTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 377
             +                  ++ YL  SNN+ TG+IPS+IC L  L +L LS NNL+G +P
Sbjct:   454 R------STEHGLSLITKPSMQYLVGSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIP 507

Query:   378 QCLGNFSDELLVLDLQGNNL 397
              C+GN    L  L+L+ N L
Sbjct:   508 PCMGNLKSTLSFLNLRQNRL 527

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 4.7e-44, P = 4.7e-44
 Identities = 141/414 (34%), Positives = 206/414 (49%)

Query:    24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
             G++P S+GNL  L  LDLS N  + E P S+G+L+ L EL L   +  G  P  + NL  
Sbjct:   146 GKIPSSLGNLTYLTNLDLSVNDFTGELPDSMGHLNKLTELHLGSAKLSGNFPSMLLNLSE 205

Query:    84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
             L ++DL  N + G LP+++ +L  L    +  N+FSG  P S     SL  L L    F 
Sbjct:   206 LTLIDLGSNQFGGMLPSNMSSLSKLVYFGIDRNSFSGSIPSSLFMLPSLTSLVLGRNDFN 265

Query:   144 GKVPHSIGNFTQ---LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS-GQIT-SSL 198
             G  P   GN +    L  L L  NNF+G +   I  L  L  ++++  N   G +  ++ 
Sbjct:   266 G--PLDFGNISSPSNLGVLSLLENNFNGPIPESISKLVGLFYLDLSLWNTKRGMVDFNTF 323

Query:   199 RNLSQLTALDLAQNSYRGMIELDVL--LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLK 256
              +L  LT LDL+  + R M+++ +   L S   L+  G++L   S L+  +   T     
Sbjct:   324 LHLKSLTFLDLSYINTRSMVDISIFSPLLSLGYLDLSGINLKISSTLSLPSPMGT----- 378

Query:   257 YIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD-PNMQNLNGFNFSHNLLT 315
              + L SCN+ +FPNFL+NQ  L ++D+S N+I G+VP+WL   P +Q +N    S N  +
Sbjct:   379 -LILSSCNIPEFPNFLENQTTLYYLDISANKIGGQVPQWLWSLPELQYVN---ISQNSFS 434

Query:   316 GFD------QHXXXXXXXXXXXXXXXX-------XTITYLASNNSLTGEIPSWICNLNIL 362
             GF+      Q                         T  +L S+N  +GEIP  IC L  L
Sbjct:   435 GFEGPADVIQRCGELLMLDISSNTFQDPFPLLPNSTTIFLGSDNRFSGEIPKTICKLVSL 494

Query:   363 ESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNE--DH 414
             ++LVLS+NN +G +P+C   F+  L VL L+ NNL       SGE P     DH
Sbjct:   495 DTLVLSNNNFNGSIPRCFEKFNTTLSVLHLRNNNL-------SGEFPEESISDH 541

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 118/348 (33%), Positives = 169/348 (48%)

Query:    29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
             S+ NLH L  LDLS N    +   SI NLS L  LDLS N F G++P S+GNL  L  LD
Sbjct:   116 SIRNLHFLTTLDLSFNDFKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLD 175

Query:    89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPH 148
             L  N + G++P+SI NL  L  L+LSFN F G+FP S G  S L  L+L    F G++P 
Sbjct:   176 LYCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPS 235

Query:   149 SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALD 208
             SIGN + L  L+L  NNFSG +   IGNL  L  ++++  NF G+I   L  L  L  ++
Sbjct:   236 SIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVN 295

Query:   209 LAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF 268
             L+ N++ G    +    S  +L  LG + N    +     +  S  L+ + L   N +  
Sbjct:   296 LSYNTFIGFQRPNKPEPSMGHL--LGSNNNFTGKIPSFICELRS--LETLDLSDNNFSGL 351

Query:   269 -PNFLQN-QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXXXX 326
              P  + N + +L  ++L  N + G +PK + +     L   +  HN L G          
Sbjct:   352 IPRCMGNLKSNLSHLNLRQNNLSGGLPKHIFEI----LRSLDVGHNQLVG---------K 398

Query:   327 XXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 374
                         +  + SN  +    P W+ +L  L+ LVL  N   G
Sbjct:   399 LPRSLRFFSTLEVLNVESNR-INDTFPFWLTSLPKLQVLVLRSNAFHG 445

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 2.1e-43, P = 2.1e-43
 Identities = 132/360 (36%), Positives = 191/360 (53%)

Query:    53 SIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111
             S+  L  L+ L+LS N F    LP   GNL  L+VL LS NG+ G++P+S  NL  L  L
Sbjct:    92 SLFGLQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNIL 151

Query:   112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL 171
             DLS N  +G FP+   N + L +L L    F G +P S+     L  L L  N  +G + 
Sbjct:   152 DLSHNELTGSFPF-VQNLTKLSILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSIE 210

Query:   172 GPIGNLRS-LEAINVAKCNFSGQITSSLRNLSQLTALDLA--QNSYRGMIELDVLLTSWK 228
              P  +  S LE + +   +F GQI   +  L  L  LDL+  + SY   I+L+ L +S+K
Sbjct:   211 APNSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYP--IDLN-LFSSFK 267

Query:   229 NLEFLGLSLNRLSVLTKATSDTTSQ-KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNR 287
             +L  L LS N L + T  TSD+     L+ + L SC L +FP  L+N   L  +DLS+N+
Sbjct:   268 SLVRLVLSGNSL-LATSITSDSKIPLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNK 326

Query:   288 IQGKVPKWLLD-PNMQNLNGFNFSHNLLTGFDQHXXXXXXXXXXXXXXXXX--------T 338
             I+GKVP+W  + P ++ +N FN     L G ++                          +
Sbjct:   327 IKGKVPEWFWNLPRLRRVNLFNNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLS 386

Query:   339 ITYLAS-NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             I  L++ NNS TG IP   CN + L  L LS+NNL+G +P+CL +F + L+V++L+ NNL
Sbjct:   387 INLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNL 446

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029112001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (1311 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (453), Expect = 2e-48
 Identities = 144/424 (33%), Positives = 210/424 (49%), Gaps = 31/424 (7%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           +IP+SL NL+ L  L L+ N+L G++P  +G + SL+ + L  N LS E P  IG L+SL
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             LDL  N   G +P S+GNL +L+ L L QN   G +P SI +L  L  LDLS N+ SG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           E P       +L++L L S  F GK+P ++ +  +LQ L L SN FSG++   +G   +L
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
             ++++  N +G+I   L +   L  L L  NS  G I     L + ++L  + L  N  
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS--LGACRSLRRVRLQDNSF 416

Query: 241 SVLTKATSDTTSQKLKY-IGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD 298
           S   +  S+ T   L Y + + + NL  +  +   +   L+ + L+ N+  G +P     
Sbjct: 417 S--GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 299 PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICN 358
             ++NL   + S N  +G       +P   G L       +    S N L+GEIP  + +
Sbjct: 475 KRLENL---DLSRNQFSG------AVPRKLGSL----SELMQLKLSENKLSGEIPDELSS 521

Query: 359 LNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTEGS 418
              L SL LSHN LSG +P         L  LDL  N L       SGE P N     G+
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMP-VLSQLDLSQNQL-------SGEIPKN----LGN 569

Query: 419 EESL 422
            ESL
Sbjct: 570 VESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  169 bits (430), Expect = 2e-45
 Identities = 140/414 (33%), Positives = 202/414 (48%), Gaps = 29/414 (7%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69
           S L +L+LS N   G   +  G++ +LE LDLS N LS E P  IG+ SSLK LDL  N 
Sbjct: 118 SSLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNF 129
             G++P S+ NL SL+ L L+ N   G++P  +  + SL+ + L +NN SGE P+  G  
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 130 SSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189
           +SL  LDL      G +P S+GN   LQYL L  N  SG +   I +L+ L +++++  +
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD 249
            SG+I   +  L  L  L L  N++ G I   V LTS   L+ L L  N+ S   +   +
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFS--GEIPKN 351

Query: 250 TTSQ-KLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQN---L 304
                 L  + L + NLT + P  L +  +L  + L  N ++G++PK L          L
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 305 NGFNFSHNLLTGFDQHPVV---------LPGNKGPLPVPPPGTITYLASNNSLTGEIPSW 355
              +FS  L + F + P+V         L G         P       + N   G +P  
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471

Query: 356 ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAP 409
             +   LE+L LS N  SG +P+ LG+ S EL+ L L  N L       SGE P
Sbjct: 472 FGSKR-LENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKL-------SGEIP 516

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (407), Expect = 2e-42
 Identities = 137/395 (34%), Positives = 195/395 (49%), Gaps = 26/395 (6%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLS-SLKELDLS 66
           N S+++ +DLS   + G++  ++  L  ++ ++LS N LS   P  I   S SL+ L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWST 126
            N F G   I  G++ +L+ LDLS N   GE+P  I +  SL+ LDL  N   G+ P S 
Sbjct: 127 NNNFTG--SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 127 GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA 186
            N +SL+ L L S    G++P  +G    L++++LG NN SG++   IG L SL  +++ 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246
             N +G I SSL NL  L  L L QN   G I   +   S + L  L LS N LS     
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPE 302

Query: 247 TSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLN 305
                 Q L+ + L S N T K P  L +   L+ + L  N+  G++PK L   N  NL 
Sbjct: 303 LV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--NLT 359

Query: 306 GFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILES 364
             + S N LTG           + P  +   G +  L   +NSL GEIP  +     L  
Sbjct: 360 VLDLSTNNLTG-----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 365 LVLSHNNLSGLLPQCLGNFSDELLV--LDLQGNNL 397
           + L  N+ SG LP     F+   LV  LD+  NNL
Sbjct: 409 VRLQDNSFSGELPS---EFTKLPLVYFLDISNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  158 bits (402), Expect = 9e-42
 Identities = 141/460 (30%), Positives = 209/460 (45%), Gaps = 73/460 (15%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IPSSLGNL  L +L L  N+L G +P S+ +L  L  LDLS N LS E P  +  L +L+
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L L  N F G++P+++ +L  L+VL L  N + GE+P ++    +L  LDLS NN +GE
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P    +  +L  L L S    G++P S+G    L+ + L  N+FSG+L      L  + 
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
            ++++  N  G+I S   ++  L  L LA+N + G   L     S K LE L LS N+ S
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG--GLPDSFGS-KRLENLDLSRNQFS 488

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
                            G     L      +Q       + LS+N++ G++P  L   + 
Sbjct: 489 -----------------GAVPRKLGSLSELMQ-------LKLSENKLSGEIPDEL--SSC 522

Query: 302 QNLNGFNFSHNLLTG-----FDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWI 356
           + L   + SHN L+G     F + PV+       L +          S N L+GEIP   
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVL-----SQLDL----------SQNQLSGEIPK-- 565

Query: 357 CNLNILESLV---LSHNNLSGLLPQCLGNFSDELLVLD---LQGNNLPLSKGCESGEAPT 410
            NL  +ESLV   +SHN+L G LP      +   L ++   + GN         SG  P 
Sbjct: 566 -NLGNVESLVQVNISHNHLHGSLP-----STGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Query: 411 NEDHTEGSEESLFSGASDWKIILTGYVGGLVAGLVLGFNF 450
                  S          W   +T  +G  +   ++ F F
Sbjct: 620 KRVRKTPS----------WWFYITCTLGAFLVLALVAFGF 649

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  157 bits (398), Expect = 3e-41
 Identities = 137/424 (32%), Positives = 206/424 (48%), Gaps = 51/424 (12%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNL-HSLEELDLSANFLSSEWPISIGNLSS 59
           +I S++  L  +  ++LS N+L G +P  +     SL  L+LS N  +    I  G++ +
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPRGSIPN 141

Query: 60  LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
           L+ LDLS N   GE+P  +G+  SLKVLDL  N   G++P S+ NL SLE L L+ N   
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 120 GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRS 179
           G+ P   G   SLK + L      G++P+ IG  T L +L L  NN +G +   +GNL++
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 180 LEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL---- 235
           L+ + + +   SG I  S+ +L +L +LDL+ NS  G  E+  L+   +NLE L L    
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNN 319

Query: 236 ----------SLNRLSVLTKATSDTTSQKLKYIG---------LRSCNLT-KFPNFLQNQ 275
                     SL RL VL   ++  + +  K +G         L + NLT + P  L + 
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 276 HHLRFMDLSDNRIQGKVPKWLLDPNMQN---LNGFNFSHNLLTGFDQHPVVLPGNKGPLP 332
            +L  + L  N ++G++PK L          L   +FS  L + F + P+V         
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV--------- 430

Query: 333 VPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLD 391
                   +L  SNN+L G I S   ++  L+ L L+ N   G LP   G  S  L  LD
Sbjct: 431 -------YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLD 481

Query: 392 LQGN 395
           L  N
Sbjct: 482 LSRN 485

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (260), Expect = 1e-23
 Identities = 103/325 (31%), Positives = 161/325 (49%), Gaps = 22/325 (6%)

Query: 76  ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS-SLKL 134
           I+  N   +  +DLS     G++ ++I  L  ++ ++LS N  SG  P      S SL+ 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI 194
           L+L +  F G +P   G+   L+ L L +N  SG++   IG+  SL+ +++      G+I
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS-VLTKATSDTTSQ 253
            +SL NL+ L  L LA N   G I  +  L   K+L+++ L  N LS  +       TS 
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRE--LGQMKSLKWIYLGYNNLSGEIPYEIGGLTS- 237

Query: 254 KLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
            L ++ L   NLT   P+ L N  +L+++ L  N++ G +P  +   ++Q L   + S N
Sbjct: 238 -LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDN 294

Query: 313 LLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNL 372
            L+G     V+   N           I +L SNN  TG+IP  + +L  L+ L L  N  
Sbjct: 295 SLSGEIPELVIQLQNL---------EILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 373 SGLLPQCLGNFSDELLVLDLQGNNL 397
           SG +P+ LG   + L VLDL  NNL
Sbjct: 345 SGEIPKNLGK-HNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 7e-15
 Identities = 33/88 (37%), Positives = 54/88 (61%)

Query: 15  LDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL 74
           L L    L+G +P  +  L  L+ ++LS N +    P S+G+++SL+ LDLS N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 75  PISMGNLGSLKVLDLSQNGYFGELPTSI 102
           P S+G L SL++L+L+ N   G +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 31/78 (39%), Positives = 50/78 (64%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IP+ +  L  L  ++LS N ++G +P S+G++ SLE LDLS N  +   P S+G L+SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 62  ELDLSQNRFFGELPISMG 79
            L+L+ N   G +P ++G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 35/89 (39%), Positives = 50/89 (56%)

Query: 39  LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL 98
           L L    L    P  I  L  L+ ++LS N   G +P S+G++ SL+VLDLS N + G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 99  PTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
           P S+  L SL  L+L+ N+ SG  P + G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 33/89 (37%), Positives = 49/89 (55%)

Query: 87  LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV 146
           L L   G  G +P  I  L  L+ ++LS N+  G  P S G+ +SL++LDL    F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIG 175
           P S+G  T L+ L+L  N+ SG +   +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L L      G +P  +  L  L+ ++LS N   G +P S+ ++ SLE LDLS+N+F+G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
           P S G  +SL++L+L      G+VP ++G     + LH  S NF+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGG----RLLHRASFNFT 523

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 83/261 (31%), Positives = 121/261 (46%), Gaps = 35/261 (13%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +PSSL  L  L  L  S          ++ NL  L  LDL+ N L S     +  L++L 
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSE-NLLNLLPLPSLDLNLNRLRSN-ISELLELTNLT 119

Query: 62  ELDLSQNRFFGELPISMGNLGS-LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
            LDL  N    ++P  +G L S LK LDLS N     LP+ +RNL +L+ LDLSFN+ S 
Sbjct: 120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS- 176

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
                                    +P  + N + L  L L  N  S DL   I  L +L
Sbjct: 177 ------------------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
           E ++++  N   ++ SSL NL  L+ L+L+ N    + +L   + +  NLE L LS N++
Sbjct: 212 EELDLSN-NSIIELLSSLSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSNNQI 267

Query: 241 SVLTKATSDTTSQKLKYIGLR 261
           S ++   S T  ++L   G  
Sbjct: 268 SSISSLGSLTNLRELDLSGNS 288

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 64/137 (46%), Positives = 82/137 (59%), Gaps = 6/137 (4%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +PS L NL  L +LDLS N+L  +LP  + NL +L  LDLS N +S   P  I  LS+L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSAL 211

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           +ELDLS N    EL  S+ NL +L  L+LS N    +LP SI NL +LE LDLS NN   
Sbjct: 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLS-NNQIS 268

Query: 121 EFPWSTGNFSSLKLLDL 137
               S G+ ++L+ LDL
Sbjct: 269 SIS-SLGSLTNLRELDL 284

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 344 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC 403
           S NS+ G IP  + ++  LE L LS+N+ +G +P+ LG  +  L +L+L GN+L      
Sbjct: 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNSL------ 502

Query: 404 ESGEAP 409
            SG  P
Sbjct: 503 -SGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 35/246 (14%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGE------LPVSVGNLHSLEELDLSANFLSSEWPISIG 55
           + S+L     L  L LSLNE          L   +     L+ELDLS N L  +    + 
Sbjct: 43  LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102

Query: 56  NL---SSLKELDLSQNRFFGE-LPISMGNLGS----LKVLDLSQNGYFGELPTSIRNLF- 106
           +L   SSL+EL L+ N      L +    L      L+ L L +N   G    ++     
Sbjct: 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162

Query: 107 ---SLEKLDLSFNNFSGEFPWSTG----NFSSLKLLDLRSCGFW----GKVPHSIGNFTQ 155
               L++L+L+ N        +         +L++LDL + G        +  ++ +   
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 156 LQYLHLGSNNFSGD-----LLGPIGNLRSLEAINVAKCNF----SGQITSSLRNLSQLTA 206
           L+ L+LG NN +           +    SL  ++++  +     +  +   L     L  
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282

Query: 207 LDLAQN 212
           LDL  N
Sbjct: 283 LDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P  L NLS L +LDLS N++  +LP  +  L +LEELDLS N +      S+ NL +L
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNL 234

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             L+LS N+   +LP S+GNL +L+ LDLS N       +S+ +L +L +LDLS N+ S 
Sbjct: 235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSN 291

Query: 121 EFPWSTGNFSSLKLL 135
             P        L+LL
Sbjct: 292 ALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 46/82 (56%)

Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI 194
           L L + G  G +P+ I     LQ ++L  N+  G++   +G++ SLE ++++  +F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 195 TSSLRNLSQLTALDLAQNSYRG 216
             SL  L+ L  L+L  NS  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 57/267 (21%), Positives = 84/267 (31%), Gaps = 63/267 (23%)

Query: 84  LKVLDLSQNGYFGE----LPTSIRNLFSLEKLDLSFNNFSGEFPWSTG-------NFSSL 132
           L+VL L  N    E    L +++R   SL++L LS N  +G  P               L
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGL 83

Query: 133 KLLDLRSCGFWGKVPHSIGNFTQ---LQYLHL---------------------------- 161
           + LDL            + +  +   LQ L L                            
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 162 -GSNNFSGDLLGPIGNL----RSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQN 212
            G N   G     +       R L+ +N+A           +   L+    L  LDL  N
Sbjct: 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203

Query: 213 SYR--GMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT----SDTTSQKLKYIGLRSCNLT 266
                G   L   L S K+LE L L  N L+    A       + +  L  + L   ++T
Sbjct: 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

Query: 267 -----KFPNFLQNQHHLRFMDLSDNRI 288
                     L  +  L  +DL  N+ 
Sbjct: 264 DDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            + SSL NL  L  L+LS N+L+ +LP S+GNL +LE LDLS N +SS    S+G+L++L
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNL 279

Query: 61  KELDLSQNRFFGELP-ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
           +ELDLS N     LP I++  L    +L+L       EL  +   L +   L        
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNS-ILLNNNILSNGE---- 334

Query: 120 GEFPWSTGNFSSLKLLDLRSC 140
              P +     SL  L     
Sbjct: 335 TSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 34  HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG 93
            SL  L LS      E P SI NL  L+ L++        LP  + NL SL+ LDLS   
Sbjct: 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836

Query: 94  YFGELPTSIRNLFSLEKLDLSFNNFSG--EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
                P    N+  L        + +G  E PW    FS+L  LD+  C    +V  +I 
Sbjct: 837 RLRTFPDISTNISDL------NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890

Query: 152 NFTQLQYLHLGSNNFS 167
                   HL + +FS
Sbjct: 891 KLK-----HLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 66/238 (27%), Positives = 94/238 (39%), Gaps = 58/238 (24%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSL 60
           +PSS+  L+KL  LD+S  E    LP  + NL SL  L+LS  + L S   IS    +++
Sbjct: 673 LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS----TNI 727

Query: 61  KELDLSQ---NRFFGELPI-SMGNLG-------------------------SLKVLDLSQ 91
             LDL +     F   L + ++  L                          SL  L LS 
Sbjct: 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787

Query: 92  NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG-NFSSLKLLDLRSCGFWG------ 144
                ELP+SI+NL  LE L++   N        TG N  SL+ LDL  C          
Sbjct: 788 IPSLVELPSSIQNLHKLEHLEIE--NCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845

Query: 145 --------------KVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188
                         +VP  I  F+ L +L +   N    +   I  L+ LE ++ + C
Sbjct: 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 159 LHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI 218
           L L +    G +   I  LR L++IN++  +  G I  SL +++ L  LDL+ NS+ G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 219 ELDV-LLTSWKNLEFLGLSLNRLS 241
              +  LTS   L  L L+ N LS
Sbjct: 483 PESLGQLTS---LRILNLNGNSLS 503

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%)

Query: 25  ELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDL---SQNRFFGELPISMGNL 81
           ELP S+  L+ LE+LD+S        P  I NL SL  L+L   S+ + F ++       
Sbjct: 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIST----- 725

Query: 82  GSLKVLDLSQNGYFGELPTSIR--NLFSLEKLDLSFNNFSGEF----PWSTGNFSSLKLL 135
            ++  LDL +     E P+++R  NL  L   ++             P  T    SL  L
Sbjct: 726 -NISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783

Query: 136 DLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG-NLRSLEAINVAKCN 189
            L       ++P SI N  +L+  HL   N       P G NL SLE+++++ C+
Sbjct: 784 FLSDIPSLVELPSSIQNLHKLE--HLEIENCINLETLPTGINLESLESLDLSGCS 836

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKVLDLSQNG 93
           +L +L +  + L   W   + +L+ L+ +DL  ++   E+P +SM    +L+ L LS   
Sbjct: 612 NLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIPDLSMAT--NLETLKLSDCS 668

Query: 94  YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG-NFSSLKLLDLRSC 140
              ELP+SI+ L  LE LD+S        P  TG N  SL  L+L  C
Sbjct: 669 SLVELPSSIQYLNKLEDLDMSRCENLEILP--TGINLKSLYRLNLSGC 714

syringae 6; Provisional. Length = 1153

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 48/224 (21%)

Query: 57  LSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFG----ELPTSIRNLFS- 107
           +  L E+DLS N    E    L   + N+ +L+V++ S + + G    EL +++  L   
Sbjct: 29  MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-DAFTGRDKDELYSNLVMLLKA 87

Query: 108 ------LEKLDLSFNNFSGEFPWSTGNFSS----LKLLDLRSCG-------------FWG 144
                 L+K+DLS N F  EFP   G+  S    L  L L + G             F  
Sbjct: 88  LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL 147

Query: 145 KVPHSIGNFTQLQYLHLGSN---NFSGDLLGPIGNLRSLEAINVAKCNFSG--------Q 193
                  +  +L+ +  G N   N S +L   +  L S E +   K   +G         
Sbjct: 148 AYNKKAADKPKLEVVICGRNRLENGSKELSAAL--LESHENLKEVKIQQNGIRPEGVTML 205

Query: 194 ITSSLRNLSQLTALDLAQN--SYRGMIELDVLLTSWKNLEFLGL 235
               L     L  LDL  N  +  G   L   L  W  L  L L
Sbjct: 206 AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249

Length = 388

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 24/58 (41%), Positives = 31/58 (53%)

Query: 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92
          +L+ LDLS N L+     +   L +LK LDLS N      P +   L SL+ LDLS N
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 53/131 (40%)

Query: 268 FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN 327
            PN +    HL+ ++LS N I+G +P                                  
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIP---------------------------------- 459

Query: 328 KGPLPVPPPGTITYLA----SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG-- 381
                 P  G+IT L     S NS  G IP  +  L  L  L L+ N+LSG +P  LG  
Sbjct: 460 ------PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Query: 382 -------NFSD 385
                  NF+D
Sbjct: 514 LLHRASFNFTD 524

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PLN03150	623	hypothetical protein; Provisional	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.93
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
KOG4341	483	consensus F-box protein containing LRR [General fu	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG4341	483	consensus F-box protein containing LRR [General fu	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.4
KOG4308	478	consensus LRR-containing protein [Function unknown	94.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.31
KOG4308	478	consensus LRR-containing protein [Function unknown	94.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.2
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.2
smart00370	26	LRR Leucine-rich repeats, outliers.	91.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.34
smart00370	26	LRR Leucine-rich repeats, outliers.	89.24
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.24
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	88.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.74
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.71
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.63
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.74

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.1e-49  Score=433.50  Aligned_cols=395  Identities=33%  Similarity=0.465  Sum_probs=200.9

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      |..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+++++
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG  162 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  162 (477)
                      +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcc
Q 038739          163 SNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV  242 (477)
Q Consensus       163 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~  242 (477)
                      +|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+..+..  +..+++|+.|++++|.+..
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~--~~~~~~L~~L~l~~n~l~~  394 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG--LCSSGNLFKLILFSNSLEG  394 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh--HhCcCCCCEEECcCCEecc
Confidence            44444444444444444444554444444444444444444444554444444333322  2333333333333332211


Q ss_pred             ccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEec----------
Q 038739          243 LTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFS----------  310 (477)
Q Consensus       243 ~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls----------  310 (477)
                        ..+.. ..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+.  .+++|+.|+++          
T Consensus       395 --~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        395 --EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             --cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCc
Confidence              11111 13445555555555552 3455555555555555555555555544433  34444444444          


Q ss_pred             -------------CCcccccCCCCc---------ccCCC--CCCCCCC---CCccceeecCCCcCccCCChhhhccCCCC
Q 038739          311 -------------HNLLTGFDQHPV---------VLPGN--KGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILE  363 (477)
Q Consensus       311 -------------~N~l~~~~~~~~---------~l~~n--~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~  363 (477)
                                   +|++++..+..+         ++++|  .+.+|..   +++|+.|++++|.+++.+|..+..+++|+
T Consensus       471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS  550 (968)
T ss_pred             ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence                         444444333221         34444  3344432   35677777777777777777777777777


Q ss_pred             eEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739          364 SLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE  404 (477)
Q Consensus       364 ~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~  404 (477)
                      .|||++|++++.+|..+..++ +|++|++++|++.|.+|..
T Consensus       551 ~L~Ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        551 QLDLSQNQLSGEIPKNLGNVE-SLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             EEECCCCcccccCChhHhcCc-ccCEEeccCCcceeeCCCc
Confidence            777777777777777777776 7777777777777777754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-46  Score=414.78  Aligned_cols=396  Identities=36%  Similarity=0.502  Sum_probs=239.9

Q ss_pred             CCccCC-CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            2 IPSSLG-NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         2 lp~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +|..+. ++++|++|++++|.+++.+|.  ..+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|..+.+
T Consensus       109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  186 (968)
T PLN00113        109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN  186 (968)
T ss_pred             CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence            344432 666666666666666555442  33455555555555555555555555555555555555555555555555


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH  160 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  160 (477)
                      +++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus       187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence            55555555555555555555555555555555555555555555555555555555555555444555555555555555


Q ss_pred             CCCCcCCCcCCcCCCCCCCCCEEEcc------------------------CCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739          161 LGSNNFSGDLLGPIGNLRSLEAINVA------------------------KCNFSGQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       161 l~~n~l~~~~~~~l~~l~~L~~L~l~------------------------~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      +++|.+.+..|..+..+++|++|+++                        +|.+++..|..+..+++|+.|++++|.+.+
T Consensus       267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence            55555444444444444444444444                        444444444444445555555555555444


Q ss_pred             ccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCC-CCcchhhhcCCCcCEEeccCCcccccCCc
Q 038739          217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNL-TKFPNFLQNQHHLRFMDLSDNRIQGKVPK  294 (477)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~  294 (477)
                      ..+..  +..+++|+.|++++|.+...  .+.. ..+++|+.|++++|.+ ..+|..+..+++|+.|++++|++++.+|.
T Consensus       347 ~~p~~--l~~~~~L~~L~Ls~n~l~~~--~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        347 EIPKN--LGKHNNLTVLDLSTNNLTGE--IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             cCChH--HhCCCCCcEEECCCCeeEee--CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence            44333  44455555555555533221  1111 1345667777777766 35677777888888888888888888888


Q ss_pred             cCCcccCCCCCeEEecCCcccccCCCCc--------------------------------ccCCC--CCCCCCC---CCc
Q 038739          295 WLLDPNMQNLNGFNFSHNLLTGFDQHPV--------------------------------VLPGN--KGPLPVP---PPG  337 (477)
Q Consensus       295 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------------~l~~n--~~~~~~~---~~~  337 (477)
                      .+.  .++.|+.|++++|++++..+..+                                ++++|  .+.+|..   +++
T Consensus       423 ~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        423 EFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             hHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence            776  78889999999998887655321                                23333  2333322   346


Q ss_pred             cceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739          338 TITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG  406 (477)
Q Consensus       338 l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~  406 (477)
                      |+.|++++|.+++.+|..+.++++|++|+|++|++++.+|..|..++ +|++|++++|+++|.+|....
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP-VLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc-cCCEEECCCCcccccCChhHh
Confidence            77788888888888888888888888888888888888888888888 889999999999888887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=309.39  Aligned_cols=368  Identities=23%  Similarity=0.202  Sum_probs=262.6

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      -+.||+++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+....+.+..++.|+.||||.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            456778888777777777777788888888777776 5565445555677888888877766666777777788888888


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL  171 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  171 (477)
                      |.++..--..|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.--
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            77765544566666677888888888776666677777777788888887766666677777888888888877764434


Q ss_pred             cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC
Q 038739          172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT  251 (477)
Q Consensus       172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~  251 (477)
                      -.|..+++|+.|.+..|.+.......|..+.++++|+|+.|++......+  +-+++.|+.|++|+|.|..+..... ..
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~d~W-sf  315 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHIDSW-SF  315 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc--ccccchhhhhccchhhhheeecchh-hh
Confidence            45777777888888877777666667777778888888888777665544  6677778888888887665543332 24


Q ss_pred             cCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739          252 SQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP  330 (477)
Q Consensus       252 ~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~  330 (477)
                      +++|++|+|++|.|++++ ..|..+..|++|+|++|.+....-..|.  .+.+|++|||++|.+++.+.+..       .
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--~lssL~~LdLr~N~ls~~IEDaa-------~  386 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--GLSSLHKLDLRSNELSWCIEDAA-------V  386 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--HhhhhhhhcCcCCeEEEEEecch-------h
Confidence            567888888888887775 5677777788888888877744444444  67778888888888777654431       2


Q ss_pred             CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCC
Q 038739          331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQG  394 (477)
Q Consensus       331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~  394 (477)
                      ....+++|+.|++.+|++.......|.++..|++|||.+|.|...-|..|.++  .|+.|-+..
T Consensus       387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~nS  448 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMNS  448 (873)
T ss_pred             hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhcc
Confidence            23447778888888888875555677888888888888888877777777766  466665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=302.87  Aligned_cols=378  Identities=22%  Similarity=0.183  Sum_probs=319.5

Q ss_pred             CCEEEccCCCCCCCccccccCC--CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739           12 LLHLDLSLNELQGELPVSVGNL--HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL   89 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   89 (477)
                      -+.||.+++.+.......+.++  +.-+.|++++|++..+.+..|.++++|+++++.+|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3567888888774433333332  34567999999999988889999999999999999998 78876666778999999


Q ss_pred             cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc
Q 038739           90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD  169 (477)
Q Consensus        90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  169 (477)
                      .+|.|+..-.+.+..++.|+.||||.|.++.....+|..-.++++|+|++|.++......|..+.+|..|.|+.|+++..
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            99999888888899999999999999999955556777778999999999999888888999999999999999999988


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                      .+..|.++++|+.|++..|.+.-.--..|.++++|+.|.|..|.+.....-.  |-.+.++++|+|+.|++..+......
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhccccc
Confidence            8888999999999999999997554668899999999999999998776544  88899999999999987766544322


Q ss_pred             cCcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          250 TTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                       .+..|+.|+++.|.|..+ ++.+..+++|+.|+|++|+|+...+..+.  .+..|++|+|++|.+...-...       
T Consensus       291 -gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~e~a-------  360 (873)
T KOG4194|consen  291 -GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDHLAEGA-------  360 (873)
T ss_pred             -ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccccchHHHHhhH-------
Confidence             577899999999999877 47788899999999999999988888877  8999999999999998653322       


Q ss_pred             CCCCCCCCccceeecCCCcCccCCC---hhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIP---SWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES  405 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  405 (477)
                         ...+.+|+.||+++|.++..|.   ..|.++++|+.|++.+|++....-..|..++ .|+.|||.+|.|...-|..+
T Consensus       361 ---f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~-~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  361 ---FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE-ALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             ---HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc-ccceecCCCCcceeeccccc
Confidence               2457899999999999987654   4578899999999999999954446899998 99999999999866555544


Q ss_pred             C
Q 038739          406 G  406 (477)
Q Consensus       406 ~  406 (477)
                      .
T Consensus       437 e  437 (873)
T KOG4194|consen  437 E  437 (873)
T ss_pred             c
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=285.04  Aligned_cols=367  Identities=32%  Similarity=0.423  Sum_probs=196.7

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      |++++.+..++.++.++|++. .+|+.+..+.+|+.|+.++|.+. ..|+.++.+..|+.++..+|+++ ..|..+..+.
T Consensus        84 p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~  160 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS  160 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH
Confidence            444444444444444444444 34444444444555555555444 23334444444444444444444 3444444444


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc-----------
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG-----------  151 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----------  151 (477)
                      +|..+++.+|++....|+.+. ++.|++||...|.++ .+|..++.+.+|+.|++..|++ ...| .|.           
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVG  236 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhc
Confidence            444444444443322222222 444444444444443 3444444444444444444444 2222 233           


Q ss_pred             -------------CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739          152 -------------NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI  218 (477)
Q Consensus       152 -------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  218 (477)
                                   +++++..||+.+|+++ ..|+.+..+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+-
T Consensus       237 ~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             ccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHH
Confidence                         4455555555555554 34444445555555555555554 334445555 5555555555443110


Q ss_pred             chhh---------------------------------------hhcCCCCCCEEeCCCCCCccccccCCcc-CcCcccEE
Q 038739          219 ELDV---------------------------------------LLTSWKNLEFLGLSLNRLSVLTKATSDT-TSQKLKYI  258 (477)
Q Consensus       219 ~~~~---------------------------------------~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L  258 (477)
                      ..-.                                       ......+.+.|++++-+++.+++..+.. .-.-...+
T Consensus       314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V  393 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV  393 (565)
T ss_pred             HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence            0000                                       0000112333444443333333322211 11123344


Q ss_pred             EccCCCC------------------------CCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcc
Q 038739          259 GLRSCNL------------------------TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL  314 (477)
Q Consensus       259 ~L~~n~l------------------------~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l  314 (477)
                      +++.|++                        ..+|..++.+++|..|+|++|.+. .+|..++  .+..|+.||++.|+|
T Consensus       394 nfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~--~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  394 NFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG--SLVRLQTLNLSFNRF  470 (565)
T ss_pred             ecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh--hhhhhheeccccccc
Confidence            4444444                        444445667788888888888777 5676666  677788888888877


Q ss_pred             cccCCCCcccCCCCCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceee
Q 038739          315 TGFDQHPVVLPGNKGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLD  391 (477)
Q Consensus       315 ~~~~~~~~~l~~n~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~  391 (477)
                      ...              |..   +..++++..++|++...-|+.+.++.+|..|||.+|.+. .+|..++++. +|++|+
T Consensus       471 r~l--------------P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-nL~hLe  534 (565)
T KOG0472|consen  471 RML--------------PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT-NLRHLE  534 (565)
T ss_pred             ccc--------------hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc-ceeEEE
Confidence            643              322   335667777889988666666999999999999999998 8899999999 999999


Q ss_pred             cCCCcCC
Q 038739          392 LQGNNLP  398 (477)
Q Consensus       392 Ls~N~l~  398 (477)
                      ++||+|.
T Consensus       535 L~gNpfr  541 (565)
T KOG0472|consen  535 LDGNPFR  541 (565)
T ss_pred             ecCCccC
Confidence            9999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=2.3e-35  Score=283.27  Aligned_cols=362  Identities=23%  Similarity=0.310  Sum_probs=205.4

Q ss_pred             CCCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            9 LSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         9 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ++-++-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            445555666666665 345656666666666666665555 45555666666666666666655 333445555666666


Q ss_pred             eCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739           88 DLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus        88 ~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      ++..|++.. -+|..+..+..|+.||||+|++. ..|..+...+++-.|+|++|++.......|-+++.|-.|||++|.+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            666665532 24555555666666666666665 5555565556666666666666333223444555666666666665


Q ss_pred             CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc-ccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG-MIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                      . ..|.-+..+..|++|++++|.+...--..+..+.+|++|.+++.+-+- ..|..  +..+.+|..+|+|.|.+..+++
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp~vPe  239 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLPIVPE  239 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCCcchH
Confidence            5 333345555566666666665543222233334445555555543221 12222  4455556666666665444433


Q ss_pred             cCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccC
Q 038739          246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLP  325 (477)
Q Consensus       246 ~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  325 (477)
                      ...  .+++|+.|+|++|.|+++.-......+|++|++|.|+++ ..|..+.  .++.|+.|.+.+|+++-.        
T Consensus       240 cly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avc--KL~kL~kLy~n~NkL~Fe--------  306 (1255)
T KOG0444|consen  240 CLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVC--KLTKLTKLYANNNKLTFE--------  306 (1255)
T ss_pred             HHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHh--hhHHHHHHHhccCccccc--------
Confidence            322  345566666666666555444444455666666666665 5555555  566666666666655422        


Q ss_pred             CCCCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739          326 GNKGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN  396 (477)
Q Consensus       326 ~n~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  396 (477)
                          .+|..   +..|+.+..++|.+. .+|+.++.|..|+.|.|++|++. .+|+.+.-++ .|+.||+..|+
T Consensus       307 ----GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~-~l~vLDlreNp  373 (1255)
T KOG0444|consen  307 ----GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP-DLKVLDLRENP  373 (1255)
T ss_pred             ----CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC-CcceeeccCCc
Confidence                22333   224455555666665 67777888888888888888776 5777777777 78888887775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-33  Score=269.83  Aligned_cols=343  Identities=25%  Similarity=0.312  Sum_probs=289.6

Q ss_pred             CCCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739           32 NLHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK  110 (477)
Q Consensus        32 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  110 (477)
                      -++-.+-.|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++.. +-..++.++.|+.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence            3456778899999998 578888999999999999999987 899999999999999999999864 4466889999999


Q ss_pred             EEccCCcCc-CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          111 LDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       111 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      +.+..|++. ..+|..+..+..|+.|||++|++ ...|..+..-.++-.|+|++|+|..+....+.+++.|-.||+|+|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            999999985 35788888999999999999999 5688888888999999999999986666667789999999999999


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc-CcCcccEEEccCCCCCCc
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT-TSQKLKYIGLRSCNLTKF  268 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L~L~~n~l~~~  268 (477)
                      +. .+|.....+..|++|+|++|.+.-..-..  +..+++|++|.+++.+ .....++... .+.+|..++++.|.+..+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v  237 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIV  237 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcc
Confidence            97 66777899999999999999876433222  4556778888888764 2233334333 778999999999999999


Q ss_pred             chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739          269 PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL  348 (477)
Q Consensus       269 p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l  348 (477)
                      |+.+.++++|+.|+||+|+|+. ......  .-.+|++|++|+|+++..+..           -..++.|+.|.+.+|++
T Consensus       238 Pecly~l~~LrrLNLS~N~ite-L~~~~~--~W~~lEtLNlSrNQLt~LP~a-----------vcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITE-LNMTEG--EWENLETLNLSRNQLTVLPDA-----------VCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceee-eeccHH--HHhhhhhhccccchhccchHH-----------HhhhHHHHHHHhccCcc
Confidence            9999999999999999999984 333333  457899999999999854211           12367889999999998


Q ss_pred             c-cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739          349 T-GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       349 ~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l  397 (477)
                      + +.||+.++.+.+|+.+..++|.+. .+|+.+.... .|+.|.|++|++
T Consensus       304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~-kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV-KLQKLKLDHNRL  351 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH-HHHHhcccccce
Confidence            7 458999999999999999999997 8999999998 999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=1.1e-33  Score=258.93  Aligned_cols=263  Identities=32%  Similarity=0.421  Sum_probs=112.9

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      |+.+++++|.+. .+-..+.++..|.+|++++|++. ..|.+++.+..++.++.++|++. .+|+.++.+.+|..+++++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            344444444444 22223444444444444444444 33334444444444444444444 4444444444444444444


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL  171 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  171 (477)
                      |.+. .+++.++.+..|+.++..+|+++ ..|..+.++.++..+++.+|++....|..+. +..|++||...|.+. .+|
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence            4442 33334444444444444444444 3344444444444444444444332222222 444444444444443 333


Q ss_pred             cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC
Q 038739          172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT  251 (477)
Q Consensus       172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~  251 (477)
                      ..++.+.+|+.|++..|++. ..| .|.+|+.|+++.++.|.+.-.....  ...++++.+||+.+|+++..++...  .
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRdNklke~Pde~c--l  273 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH--LKHLNSLLVLDLRDNKLKEVPDEIC--L  273 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH--hcccccceeeeccccccccCchHHH--H
Confidence            34444444444444444443 223 3444444444444444443222211  3344444444444444333322211  2


Q ss_pred             cCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcc
Q 038739          252 SQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRI  288 (477)
Q Consensus       252 ~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i  288 (477)
                      +.+|+.||+++|.|+.+|..++++ .|+.|-+.+|.+
T Consensus       274 LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            233444444444444444444444 444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-29  Score=252.53  Aligned_cols=368  Identities=27%  Similarity=0.339  Sum_probs=195.4

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL   89 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   89 (477)
                      ..++.|+++.|.+-...-+...+.-+|++|++++|++. ..|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence            33555666666554332233344445666666666654 45555566666666666666655 45555666666666666


Q ss_pred             cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc
Q 038739           90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD  169 (477)
Q Consensus        90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  169 (477)
                      .+|.+ ...|..+..+.+|++|++++|.+. .+|..+..+..++.+..++|.....    ++... ++.+++..|.+.+.
T Consensus        99 ~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~  171 (1081)
T KOG0618|consen   99 KNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS  171 (1081)
T ss_pred             ccchh-hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence            66655 345566666666666666666665 5555555555555555555511111    11111 44455555555444


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh----------------hhhcCCCCCCEE
Q 038739          170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD----------------VLLTSWKNLEFL  233 (477)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----------------~~~~~~~~L~~L  233 (477)
                      ++..+..++.  .|++.+|.+.   ...+..+++|+.|....|++.......                .......+|+++
T Consensus       172 ~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~  246 (1081)
T KOG0618|consen  172 FLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYL  246 (1081)
T ss_pred             hhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceee
Confidence            4444444333  4555555543   112344444444544444444322111                001122344455


Q ss_pred             eCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCc
Q 038739          234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      ++++|++..+++  ....+.+|+.+...+|.++.+|..+...++|+.|++..|.+. .+|....  .+..|++|+|..|+
T Consensus       247 dis~n~l~~lp~--wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le--~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  247 DISHNNLSNLPE--WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLE--GLKSLRTLDLQSNN  321 (1081)
T ss_pred             ecchhhhhcchH--HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCccc--ccceeeeeeehhcc
Confidence            555544433331  111344455555555555444444444445555555555554 4444444  67889999999999


Q ss_pred             ccccCCCCc----------ccCCC-CCCCCC----CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739          314 LTGFDQHPV----------VLPGN-KGPLPV----PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       314 l~~~~~~~~----------~l~~n-~~~~~~----~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  378 (477)
                      +.......+          ..+.| ....|.    ..+.|+.|.+.+|.+++..-..+.+.++|+.|+|+||++......
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            987765433          11111 111111    134566777777777777666677777777777777777633334


Q ss_pred             hhhhcccccceeecCCCcC
Q 038739          379 CLGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       379 ~l~~l~~~L~~L~Ls~N~l  397 (477)
                      .+.++. .|+.|+||||.+
T Consensus       402 ~~~kle-~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  402 KLRKLE-ELEELNLSGNKL  419 (1081)
T ss_pred             HHhchH-HhHHHhcccchh
Confidence            566676 777777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-30  Score=259.87  Aligned_cols=372  Identities=28%  Similarity=0.343  Sum_probs=202.5

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      +.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|
T Consensus        43 ~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL  119 (1081)
T ss_pred             heeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence            3445899999999887 77878888999999999999887 56677888899999999988876 788888889999999


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCC-------------------cCcCCCCccccCCCCCCEEEccCCCCcccCCc
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFN-------------------NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPH  148 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  148 (477)
                      |++.|++ +.+|..+..++.++.+..++|                   .+.+.++..+..+..  .|+|++|.+..   .
T Consensus       120 dlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~  193 (1081)
T KOG0618|consen  120 DLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---L  193 (1081)
T ss_pred             ccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---h
Confidence            9999987 455655554444444444444                   333333333333333  46666666531   1


Q ss_pred             cccCC--------------------CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEe
Q 038739          149 SIGNF--------------------TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALD  208 (477)
Q Consensus       149 ~l~~l--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  208 (477)
                      .+..+                    ++|+.|+.++|.++...+  -....+|++++++.|+++ .+|+|+..+.+|+.++
T Consensus       194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~  270 (1081)
T KOG0618|consen  194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALN  270 (1081)
T ss_pred             hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEec
Confidence            11222                    344444444444442211  112356777777777776 4457777777777777


Q ss_pred             CcCCcCccccchhh--------------------hhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc
Q 038739          209 LAQNSYRGMIELDV--------------------LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF  268 (477)
Q Consensus       209 L~~n~l~~~~~~~~--------------------~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~  268 (477)
                      ..+|.+........                    .....+.|++|++..|++...++.........+..|..+.|.+...
T Consensus       271 ~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  271 ANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             ccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            77777743221100                    1233555666666666555444322111111122222222222111


Q ss_pred             chh-hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCc---------ccCCC-CCCCCC---C
Q 038739          269 PNF-LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV---------VLPGN-KGPLPV---P  334 (477)
Q Consensus       269 p~~-l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~l~~n-~~~~~~---~  334 (477)
                      |.. =...+.|+.|.+.+|.+++.....+.  .+..|+.|+|++|++..++...+         ++++| ...+|.   .
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~  428 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN  428 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence            100 00122344444445544444333333  44555555555555543321111         11111 111121   1


Q ss_pred             CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739          335 PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN  396 (477)
Q Consensus       335 ~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  396 (477)
                      .+.|++|...+|++. ..| .+.+++.|+.+|+|.|+++...-..-...+ .|++||++||.
T Consensus       429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p-~LkyLdlSGN~  487 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP-NLKYLDLSGNT  487 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc-ccceeeccCCc
Confidence            345555555666655 445 566667777777777766643222111223 67777777764

>PLN03210 Resistant to P

Probab=99.94  E-value=2.2e-25  Score=246.87  Aligned_cols=341  Identities=19%  Similarity=0.223  Sum_probs=256.0

Q ss_pred             ccccccCCCCCCEEEccccc------CCccccccCCCCC-CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcc
Q 038739           26 LPVSVGNLHSLEELDLSANF------LSSEWPISIGNLS-SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL   98 (477)
Q Consensus        26 ~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   98 (477)
                      .+.+|.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++++|++. .+
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence            34567888888888886553      2234566666654 5888888888876 677766 4688888999888874 56


Q ss_pred             cccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCC
Q 038739           99 PTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR  178 (477)
Q Consensus        99 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  178 (477)
                      +..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            6777888889999998876555666 47778889999998887777788888888899999998875444556544 678


Q ss_pred             CCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc----cCC--ccCc
Q 038739          179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK----ATS--DTTS  252 (477)
Q Consensus       179 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~----~~~--~~~~  252 (477)
                      +|+.|++++|.....+|..   ..+|+.|++++|.+...+.    ...+++|+.|++.++....+..    ...  ...+
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~----~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS----NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc----cccccccccccccccchhhccccccccchhhhhcc
Confidence            8889999888655455532   4578888998888765432    2246778888887643211111    000  1135


Q ss_pred             CcccEEEccCCCC-CCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCC
Q 038739          253 QKLKYIGLRSCNL-TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPL  331 (477)
Q Consensus       253 ~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~  331 (477)
                      ++|+.|++++|.. ..+|..+.++++|+.|++++|...+.+|...   .+++|+.|++++|....             .+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~-------------~~  841 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLR-------------TF  841 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccc-------------cc
Confidence            6899999999865 7899999999999999999987666788765   68999999999975432             33


Q ss_pred             CCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739          332 PVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN  396 (477)
Q Consensus       332 ~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~  396 (477)
                      |..+.+++.|++++|.++ .+|.++..+++|+.|+|++|.-...+|..+..++ .|+.+++++|.
T Consensus       842 p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~-~L~~L~l~~C~  904 (1153)
T PLN03210        842 PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCG  904 (1153)
T ss_pred             cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc-CCCeeecCCCc
Confidence            455678999999999998 6899999999999999999544446887888888 99999999985

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=1e-23  Score=233.58  Aligned_cols=337  Identities=20%  Similarity=0.214  Sum_probs=256.0

Q ss_pred             ccCCCCCCCCEEEccCCCC------CCCccccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCc
Q 038739            4 SSLGNLSKLLHLDLSLNEL------QGELPVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI   76 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   76 (477)
                      .+|.++++|+.|.+..+..      ...+|..|..++ +|+.|.+.++.+. .+|..| ...+|++|++++|++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            4588899999999976543      334666777664 6999999999887 556666 5689999999999987 6777


Q ss_pred             ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739           77 SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL  156 (477)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  156 (477)
                      .+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            888999999999998865566664 7889999999999987767899999999999999999987667777765 78999


Q ss_pred             cEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc-------ccchhhhhcCCCC
Q 038739          157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG-------MIELDVLLTSWKN  229 (477)
Q Consensus       157 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~~~~  229 (477)
                      +.|++++|.....+|..   ..+|+.|++++|.+. .+|..+ .+++|+.|.+.++....       ..+.  .....++
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~--~~~~~~s  779 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL--MTMLSPS  779 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh--hhhcccc
Confidence            99999998765555543   467899999999886 455544 57888888887743221       1111  1334578


Q ss_pred             CCEEeCCCCCCccccccCCcc-CcCcccEEEccCCC-CCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739          230 LEFLGLSLNRLSVLTKATSDT-TSQKLKYIGLRSCN-LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF  307 (477)
Q Consensus       230 L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L~L~~n~-l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L  307 (477)
                      |+.|++++|  ......+... .+++|+.|++++|. ++.+|... .+++|+.|++++|.....+|.     ...+|+.|
T Consensus       780 L~~L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L  851 (1153)
T PLN03210        780 LTRLFLSDI--PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDL  851 (1153)
T ss_pred             chheeCCCC--CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEe
Confidence            999999988  3344344332 67889999999874 57888655 688999999999876555554     24678999


Q ss_pred             EecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCc
Q 038739          308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNN  371 (477)
Q Consensus       308 ~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~  371 (477)
                      ++++|.++..+..           ...+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       852 ~Ls~n~i~~iP~s-----------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        852 NLSRTGIEEVPWW-----------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCccChHH-----------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            9999988754211           1236789999998855444688888889999999999984

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=3e-27  Score=216.58  Aligned_cols=369  Identities=22%  Similarity=0.216  Sum_probs=227.3

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEeccc-CcCcccCCcccCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ-NRFFGELPISMGN   80 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~   80 (477)
                      ||..+.  +.-++|+|..|+|+...+.+|..+++|+.||||+|+|+.+.|++|.+++.|..|-+.+ |+|+......|++
T Consensus        61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g  138 (498)
T KOG4237|consen   61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG  138 (498)
T ss_pred             CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence            454443  3567889999999988888899999999999999999988899999998887777666 8888666678888


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc------------cCCc
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG------------KVPH  148 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------~~~~  148 (477)
                      +..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...-...+..+..++.+.+..|.+..            ..|.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            9999999999888877777888899999999999998884444478888888888888776311            1111


Q ss_pred             cccCCCCCcEEECCCCcC-------------------------CCc-CCcCCCCCCCCCEEEccCCccccccchhhhcCC
Q 038739          149 SIGNFTQLQYLHLGSNNF-------------------------SGD-LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS  202 (477)
Q Consensus       149 ~l~~l~~L~~L~l~~n~l-------------------------~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  202 (477)
                      .++......-..+.+..+                         .+. ....|..+++|++|++++|+++.+-+.+|.+..
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence            111111111111111111                         111 112345566666666666666665566666666


Q ss_pred             CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC------CcchhhhcCC
Q 038739          203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT------KFPNFLQNQH  276 (477)
Q Consensus       203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~p~~l~~~~  276 (477)
                      ++++|.|..|++..+....  |.++..|++|+|.+|+|+.+....+.. ...|.+|.+-.|.+.      .+-+|+.+-.
T Consensus       299 ~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQT-LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             hhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccc-cceeeeeehccCcccCccchHHHHHHHhhCC
Confidence            6666666666665443332  566666666666666655554444332 334555555544431      1122222110


Q ss_pred             CcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccC---CCCc-------------------ccCCC-CCCCCC
Q 038739          277 HLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD---QHPV-------------------VLPGN-KGPLPV  333 (477)
Q Consensus       277 ~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~-------------------~l~~n-~~~~~~  333 (477)
                                 -.| .|..-   .-..++.+.+++..+..+.   +.+.                   ..++. ...+|.
T Consensus       376 -----------~~~-~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~  440 (498)
T KOG4237|consen  376 -----------VVG-NPRCQ---SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPR  440 (498)
T ss_pred             -----------CCC-CCCCC---CCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCC
Confidence                       000 11110   1122344444443332211   0000                   01111 223444


Q ss_pred             CCC-ccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCC
Q 038739          334 PPP-GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN  395 (477)
Q Consensus       334 ~~~-~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N  395 (477)
                      ..| ....+++.+|.++ .+|..  .+.+| .+|+|+|+++...-..|.+++ .|.+|-|++|
T Consensus       441 ~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t-ql~tlilsyn  498 (498)
T KOG4237|consen  441 GIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMT-QLSTLILSYN  498 (498)
T ss_pred             CCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchh-hhheeEEecC
Confidence            433 5678889999998 67776  67778 899999999866667788898 8999999887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.7e-23  Score=216.48  Aligned_cols=266  Identities=23%  Similarity=0.256  Sum_probs=171.2

Q ss_pred             CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739           59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR  138 (477)
Q Consensus        59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  138 (477)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++. +|..   .++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            3556677777666 4555554  366777777776643 4432   356777777777776 34432   3566777777


Q ss_pred             CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739          139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI  218 (477)
Q Consensus       139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  218 (477)
                      +|.+.. +|..   .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.+.+..
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence            776642 3332   2456677777777763 3322   3567777777777764 2321   235667777777776533


Q ss_pred             chhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCc
Q 038739          219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD  298 (477)
Q Consensus       219 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~  298 (477)
                      ..      ..+|+.|++++|+++.++..     +.+|+.|++++|.++.+|..   ..+|+.|++++|++++ +|..   
T Consensus       339 ~l------p~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---  400 (788)
T PRK15387        339 TL------PSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---  400 (788)
T ss_pred             cc------ccccceEecCCCccCCCCCC-----CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---
Confidence            21      14677788887777655442     24677788888888777753   3567888888888873 4532   


Q ss_pred             ccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739          299 PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       299 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  378 (477)
                        .++|+.|++++|+++++              |..+.+|+.|++++|+++ .+|..++++++|+.|+|++|++++.+|.
T Consensus       401 --~s~L~~LdLS~N~LssI--------------P~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        401 --PSELKELMVSGNRLTSL--------------PMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             --ccCCCEEEccCCcCCCC--------------CcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence              35678888888887743              333456777888888887 6788888888888888888888887777


Q ss_pred             hhhh
Q 038739          379 CLGN  382 (477)
Q Consensus       379 ~l~~  382 (477)
                      .+..
T Consensus       464 ~L~~  467 (788)
T PRK15387        464 ALRE  467 (788)
T ss_pred             HHHH
Confidence            6644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.7e-23  Score=216.41  Aligned_cols=265  Identities=23%  Similarity=0.254  Sum_probs=213.5

Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL  161 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  161 (477)
                      .+-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|..   +++|++|++++|+++. +|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            45678999999996 5777665  38999999999999 56643   5899999999999964 4543   368999999


Q ss_pred             CCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739          162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS  241 (477)
Q Consensus       162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~  241 (477)
                      ++|.++. +|..   ..+|+.|++++|+++. +|.   .+++|+.|++++|++.+....      ..+|+.|++++|.+.
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLT  335 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC------cccccccccccCccc
Confidence            9999874 3432   3678999999999984 443   357899999999999875431      246889999999887


Q ss_pred             cccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCC
Q 038739          242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP  321 (477)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  321 (477)
                      .++..     +.+|+.|++++|+++.+|..   .++|+.|++++|++++ +|..     ..+|+.|++++|++++.    
T Consensus       336 ~LP~l-----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l-----~~~L~~LdLs~N~Lt~L----  397 (788)
T PRK15387        336 SLPTL-----PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL-----PSGLKELIVSGNRLTSL----  397 (788)
T ss_pred             ccccc-----ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc-----ccccceEEecCCcccCC----
Confidence            66543     25799999999999999863   4678999999999984 6643     35799999999999853    


Q ss_pred             cccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739          322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       322 ~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                                |..++.|+.|++++|.+++ +|...   .+|+.|++++|+++ .+|..+..++ .|+.|++++|+|+|.+
T Consensus       398 ----------P~l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        398 ----------PVLPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPLSERT  461 (788)
T ss_pred             ----------CCcccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhcc-CCCeEECCCCCCCchH
Confidence                      4445789999999999984 77543   46889999999998 7899999998 9999999999999987


Q ss_pred             CCCC
Q 038739          402 GCES  405 (477)
Q Consensus       402 p~~~  405 (477)
                      |...
T Consensus       462 ~~~L  465 (788)
T PRK15387        462 LQAL  465 (788)
T ss_pred             HHHH
Confidence            7643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.6e-24  Score=197.33  Aligned_cols=114  Identities=28%  Similarity=0.262  Sum_probs=100.7

Q ss_pred             ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739            4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      .+|+.+++|++||||+|.|+.+.|++|.++++|..|-+-+ |+|+....+.|+++..|+-|.+.-|++.-...+.|..++
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            6799999999999999999999999999999998877765 999988888999999999999999999877888899999


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCccEEEccCCc
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN  117 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  117 (477)
                      +|..|.+..|.+...--..|..+.+++.+.+..|.
T Consensus       165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            99999999998854444478888888888887776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2e-20  Score=194.88  Aligned_cols=244  Identities=21%  Similarity=0.278  Sum_probs=124.2

Q ss_pred             CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEcc
Q 038739          107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA  186 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  186 (477)
                      +|+.|++++|+++ .+|..+.  ++|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            3444444444444 2332222  24444444444443 2232221  23444444444444 2232221  244555555


Q ss_pred             CCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC
Q 038739          187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT  266 (477)
Q Consensus       187 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~  266 (477)
                      +|+++ .+|..+.  ++|+.|++++|++++....   +  .++|+.|++++|.+..++..    .+++|+.|++++|.++
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~---l--p~sL~~L~Ls~N~Lt~LP~~----l~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRTLPAH---L--PSGITHLNVQSNSLTALPET----LPPGLKTLEAGENALT  338 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccccCccc---c--hhhHHHHHhcCCccccCCcc----ccccceeccccCCccc
Confidence            55444 2333221  3455555555555433211   1  13455666666655543321    1246777777777776


Q ss_pred             CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCC
Q 038739          267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNN  346 (477)
Q Consensus       267 ~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n  346 (477)
                      .+|..+  +++|+.|++++|+++ .+|..+    .++|+.|++++|+++.+++             .....|+.|++++|
T Consensus       339 ~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l----p~~L~~LdLs~N~Lt~LP~-------------~l~~sL~~LdLs~N  398 (754)
T PRK15370        339 SLPASL--PPELQVLDVSKNQIT-VLPETL----PPTITTLDVSRNALTNLPE-------------NLPAALQIMQASRN  398 (754)
T ss_pred             cCChhh--cCcccEEECCCCCCC-cCChhh----cCCcCEEECCCCcCCCCCH-------------hHHHHHHHHhhccC
Confidence            666544  357777777777776 455443    2567777777777764321             11235667777777


Q ss_pred             cCccCCChh----hhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcc
Q 038739          347 SLTGEIPSW----ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLS  400 (477)
Q Consensus       347 ~l~~~~p~~----~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~  400 (477)
                      +++ .+|..    +..++.+..|++.+|.++.      ..+. .|+.+ ++.+.+.|.
T Consensus       399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~-~L~~L-l~s~~~~gp  447 (754)
T PRK15370        399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQ-NMQRL-MSSVGYQGP  447 (754)
T ss_pred             Ccc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHH-HHHHh-hhcccccCC
Confidence            776 44443    3445788899999998872      2333 44445 444555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1.5e-20  Score=195.90  Aligned_cols=181  Identities=23%  Similarity=0.371  Sum_probs=101.0

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      +.+.|+++++.++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|++|++++|+++ .+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4567777777776 3454442  467777777777764 343332  46777777777766 4454432  357777777


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      +|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            77764 4454443  36677777777766 4554443  456666666666643 333322  356666666666653 2


Q ss_pred             CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                      |..+  .++|+.|++++|.+++ +|..+  .++|+.|++++|++.
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT  359 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC
Confidence            3222  2455556666655553 33332  145555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1e-20  Score=182.67  Aligned_cols=278  Identities=24%  Similarity=0.245  Sum_probs=141.9

Q ss_pred             EEEccCCCCC-CCccccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcc------cCCcccCCCC
Q 038739           14 HLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFG------ELPISMGNLG   82 (477)
Q Consensus        14 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~   82 (477)
                      .|+|..+.++ ......+..+.+|++|+++++.++..    ++..+...+.|++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777776 33444566677788888888877542    34445666778888888776652      1233455566


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCC---ccEEEccCCcCcC----CCCccccCC-CCCCEEEccCCCCccc----CCccc
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFS---LEKLDLSFNNFSG----EFPWSTGNF-SSLKLLDLRSCGFWGK----VPHSI  150 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~----~~~~l  150 (477)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|++|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777765444444443333   6777776666652    111223334 5566666666655421    12233


Q ss_pred             cCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc--hhhhhcCCC
Q 038739          151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE--LDVLLTSWK  228 (477)
Q Consensus       151 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~  228 (477)
                      ..+++|++|++++|.+++....                    .++..+..+++|++|++++|.+.+...  ....+..++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence            4444555555555554421100                    111222333444444444444432211  111233444


Q ss_pred             CCCEEeCCCCCCccccccCCcc----CcCcccEEEccCCCCC-----CcchhhhcCCCcCEEeccCCcccccC----Ccc
Q 038739          229 NLEFLGLSLNRLSVLTKATSDT----TSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKV----PKW  295 (477)
Q Consensus       229 ~L~~L~ls~n~i~~~~~~~~~~----~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L~Ls~n~i~~~~----p~~  295 (477)
                      +|+.|++++|.+...+......    ..+.|++|++++|.++     .+...+..+++|+++++++|.+.+..    ...
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            5555555555433211111111    1245666666666653     22344455567777777777776442    222


Q ss_pred             CCcccC-CCCCeEEecCCc
Q 038739          296 LLDPNM-QNLNGFNFSHNL  313 (477)
Q Consensus       296 ~~~~~l-~~L~~L~Ls~N~  313 (477)
                      +.  .. +.|+.+++.+|.
T Consensus       302 ~~--~~~~~~~~~~~~~~~  318 (319)
T cd00116         302 LL--EPGNELESLWVKDDS  318 (319)
T ss_pred             Hh--hcCCchhhcccCCCC
Confidence            21  22 466677766664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1e-20  Score=182.60  Aligned_cols=280  Identities=24%  Similarity=0.221  Sum_probs=161.5

Q ss_pred             EEEcccccCCc-cccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCC------cccccccCCC
Q 038739           38 ELDLSANFLSS-EWPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFG------ELPTSIRNLF  106 (477)
Q Consensus        38 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~  106 (477)
                      .|+|..+.+++ .....+..+.+|++|+++++.++..    ++..+...++|++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35555665552 2233344555667777766665421    33344455556666666665531      1122333444


Q ss_pred             CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCC---CCcEEECCCCcCCC----cCCcCCCCC-C
Q 038739          107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT---QLQYLHLGSNNFSG----DLLGPIGNL-R  178 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~  178 (477)
                      +|++|++++|.+.                        ...+..+..+.   +|++|++++|.+++    .+...+..+ +
T Consensus        82 ~L~~L~l~~~~~~------------------------~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~  137 (319)
T cd00116          82 GLQELDLSDNALG------------------------PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP  137 (319)
T ss_pred             ceeEEEccCCCCC------------------------hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence            5555555544444                        33333332222   26666666655542    111223344 6


Q ss_pred             CCCEEEccCCcccc----ccchhhhcCCCCCEEeCcCCcCccccc--hhhhhcCCCCCCEEeCCCCCCccccccCC---c
Q 038739          179 SLEAINVAKCNFSG----QITSSLRNLSQLTALDLAQNSYRGMIE--LDVLLTSWKNLEFLGLSLNRLSVLTKATS---D  249 (477)
Q Consensus       179 ~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~~~~~---~  249 (477)
                      +|+.|++++|.+++    .++..+..+++|++|++++|.+.+...  ....+..+++|+.|++++|.+...+....   .
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            77777777777763    234456777889999999998875321  11124566899999999997754432211   1


Q ss_pred             cCcCcccEEEccCCCCCCc--chhhhc----CCCcCEEeccCCccccc----CCccCCcccCCCCCeEEecCCcccccCC
Q 038739          250 TTSQKLKYIGLRSCNLTKF--PNFLQN----QHHLRFMDLSDNRIQGK----VPKWLLDPNMQNLNGFNFSHNLLTGFDQ  319 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l~~~--p~~l~~----~~~L~~L~Ls~n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~  319 (477)
                      ..+++|++|++++|.++..  ......    .+.|+.|++++|.+++.    +...+.  .+++|+.+++++|.++....
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~--~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA--EKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh--cCCCccEEECCCCCCcHHHH
Confidence            2567899999999998642  121222    47999999999999732    222333  56899999999999985421


Q ss_pred             CCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739          320 HPVVLPGNKGPLPVPPPGTITYLASNNSL  348 (477)
Q Consensus       320 ~~~~l~~n~~~~~~~~~~l~~L~ls~n~l  348 (477)
                      ..+     ...+...-+.++++++.+|.+
T Consensus       296 ~~~-----~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLL-----AESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHH-----HHHHhhcCCchhhcccCCCCC
Confidence            110     001111225677888877653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=7.3e-20  Score=149.83  Aligned_cols=155  Identities=35%  Similarity=0.558  Sum_probs=77.1

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ++.+.+.|.||+|+++ .+|..++.+.+|++|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3444455555555555 33334555555555555555554 34444555555555555555544 455555555555555


Q ss_pred             eCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739           88 DLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus        88 ~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      |+++|++.. .+|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+.+|.+ -..|..++.++.|++|++.+|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhccccee
Confidence            555555432 24444444555555555555554 4444555555555555555444 23444444444455555555444


Q ss_pred             C
Q 038739          167 S  167 (477)
Q Consensus       167 ~  167 (477)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=7.9e-19  Score=143.81  Aligned_cols=165  Identities=31%  Similarity=0.484  Sum_probs=120.7

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      +.++.+++.|.||+|+++ ..|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++ ...|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhh
Confidence            445667777888888887 44556778888888888888876 6777788888888888888877 46777888888888


Q ss_pred             EEEccCCcCc-CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739          110 KLDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC  188 (477)
Q Consensus       110 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  188 (477)
                      .||+.+|++. ...|..|..+..|+.|++++|.+ ..+|..++++++|+.|.+.+|.+- ..|..++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            8888887774 35676777777777777777777 456677777777777777777765 45666777777777777777


Q ss_pred             ccccccchhhhc
Q 038739          189 NFSGQITSSLRN  200 (477)
Q Consensus       189 ~l~~~~~~~l~~  200 (477)
                      .++ .+|..+++
T Consensus       184 rl~-vlppel~~  194 (264)
T KOG0617|consen  184 RLT-VLPPELAN  194 (264)
T ss_pred             eee-ecChhhhh
Confidence            776 44444443

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=1.9e-12  Score=134.77  Aligned_cols=110  Identities=24%  Similarity=0.280  Sum_probs=86.1

Q ss_pred             cCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhh
Q 038739          278 LRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWIC  357 (477)
Q Consensus       278 L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~  357 (477)
                      ++.|+|++|.+.+.+|..+.  .+++|+.|+|++|++++.++..+          ..++.|+.|++++|+++|.+|+.++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchHHh
Confidence            67777788877777777776  67778888888777776544321          2356777788888888889999999


Q ss_pred             ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739          358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL  399 (477)
Q Consensus       358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  399 (477)
                      ++++|+.|||++|+++|.+|..+......+..+++++|....
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999999999999999887653367889999997543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.6e-13  Score=127.16  Aligned_cols=210  Identities=25%  Similarity=0.258  Sum_probs=96.3

Q ss_pred             CCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcc
Q 038739          177 LRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL  255 (477)
Q Consensus       177 l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L  255 (477)
                      +.+|+.+.+.++....... .....|++++.|||+.|-+....+.......+|+|+.|+++.|++...........++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            3444444444444331110 234445555555555555544444444444555555555555544333222222244556


Q ss_pred             cEEEccCCCCC--CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739          256 KYIGLRSCNLT--KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV  333 (477)
Q Consensus       256 ~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~  333 (477)
                      +.|.++.|+++  .+...+..+|+|+.|+|..|...........  .+..|+.|||++|++-.+..         +..-.
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~---------~~~~~  268 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQ---------GYKVG  268 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--hhhHHhhccccCCccccccc---------ccccc
Confidence            66666666553  2223344556666666665531111111111  34455566666665544321         11222


Q ss_pred             CCCccceeecCCCcCccC-CChh-----hhccCCCCeEeCCCCcCcccCC--chhhhcccccceeecCCCcCCc
Q 038739          334 PPPGTITYLASNNSLTGE-IPSW-----ICNLNILESLVLSHNNLSGLLP--QCLGNFSDELLVLDLQGNNLPL  399 (477)
Q Consensus       334 ~~~~l~~L~ls~n~l~~~-~p~~-----~~~l~~L~~LdLs~N~l~~~~p--~~l~~l~~~L~~L~Ls~N~l~~  399 (477)
                      .++.|..|+++.+.+... .|+.     ...+++|++|+++.|++.. .+  ..+..++ +|+.|.+..|.++-
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~-nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLE-NLKHLRITLNYLNK  340 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccc-hhhhhhcccccccc
Confidence            345555555555555432 1221     2345666666666666642 12  2334444 55556655665543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.32  E-value=3.3e-12  Score=126.94  Aligned_cols=175  Identities=37%  Similarity=0.530  Sum_probs=82.6

Q ss_pred             CCCCCCCEEecccCcCcccCCcccCCCC-CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCC
Q 038739           55 GNLSSLKELDLSQNRFFGELPISMGNLG-SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK  133 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  133 (477)
                      ..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            33344555555555554 3333334442 5555555555542 23334455555555555555555 3333333445555


Q ss_pred             EEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739          134 LLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS  213 (477)
Q Consensus       134 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  213 (477)
                      .|++++|.+. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..+..+++++.|++++|.
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence            5555555552 23333333334555555555322 223334444555555555555432 23444555555555555555


Q ss_pred             CccccchhhhhcCCCCCCEEeCCCCC
Q 038739          214 YRGMIELDVLLTSWKNLEFLGLSLNR  239 (477)
Q Consensus       214 l~~~~~~~~~~~~~~~L~~L~ls~n~  239 (477)
                      +.....    +....+++.|++++|.
T Consensus       267 i~~i~~----~~~~~~l~~L~~s~n~  288 (394)
T COG4886         267 ISSISS----LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccc----ccccCccCEEeccCcc
Confidence            544333    3445555555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=4.1e-12  Score=126.27  Aligned_cols=199  Identities=38%  Similarity=0.498  Sum_probs=159.0

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCC-CCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           14 HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLS-SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      .+++..+.+... ...+..++.++.|++.+|.++. ++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            578888877523 3356666889999999999985 454566664 8999999999997 66677889999999999999


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG  172 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  172 (477)
                      ++. .+|......++|+.|++++|++. .+|........|++|.+++|.. -..+..+..+.++..+.+.+|++.. .+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeee-ccc
Confidence            985 45555557889999999999998 6776666667799999999964 2455678888899999999998863 356


Q ss_pred             CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh
Q 038739          173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD  221 (477)
Q Consensus       173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  221 (477)
                      .+..++.++.|++++|.++....  +....+++.|++++|.+....+..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            77888899999999999985443  888999999999999887665543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.3e-13  Score=133.17  Aligned_cols=174  Identities=32%  Similarity=0.422  Sum_probs=128.1

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +..-...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|++||++.|++. .+|..+..| -|+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence            444556777778777 67777777777888888877776 56667778888888888888876 666666665 377788


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +++|++ +.+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++. 
T Consensus       150 ~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCcc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence            888877 456777777777888888888877 66777777778888888877773 455555533 4777888888877 


Q ss_pred             cCCcCCCCCCCCCEEEccCCccc
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      .+|-.|.+++.|++|-|.+|.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            56777778888888888888776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=5e-13  Score=122.06  Aligned_cols=204  Identities=25%  Similarity=0.302  Sum_probs=92.4

Q ss_pred             ccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcc----cCCc-------ccCCCCCCCEEeCcCCCC
Q 038739           30 VGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFG----ELPI-------SMGNLGSLKVLDLSQNGY   94 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~-------~~~~l~~L~~L~Ls~n~l   94 (477)
                      +.....+++++||+|.+...    +...+.+.+.|+..++++- ++|    .+|+       ++..+++|++||||.|-+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            44556677777777766532    2233455566666666553 121    2222       223445555555555555


Q ss_pred             CCcccc----cccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           95 FGELPT----SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        95 ~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      ....+.    .+.++..|++|.|.+|.+...-...++  ..|..|.         ...-.+.-++|+++..+.|++....
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence            322221    223444555555555544311000000  0011100         0011223345666666666554211


Q ss_pred             ----CcCCCCCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCcc--ccchhhhhcCCCCCCEEeCCCCCC
Q 038739          171 ----LGPIGNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRG--MIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       171 ----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                          ...+...+.|+.+.+..|.|...    ....+..+++|++|||.+|.++.  .......++.|++|+.|++++|.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence                12234445566666665555321    23345566666666666665542  222223355555666666665544


Q ss_pred             ccccc
Q 038739          241 SVLTK  245 (477)
Q Consensus       241 ~~~~~  245 (477)
                      ..-+.
T Consensus       254 ~~~Ga  258 (382)
T KOG1909|consen  254 ENEGA  258 (382)
T ss_pred             ccccH
Confidence            44433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=3e-12  Score=114.59  Aligned_cols=127  Identities=20%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEE
Q 038739          154 TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL  233 (477)
Q Consensus       154 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  233 (477)
                      ..|+++|+++|.|+ .+.++..-.|.++.|+++.|.+...  ..+..+++|+.||+++|.++....+   -..+-++++|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---HLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---HhhhcCEeee
Confidence            44555555555554 2233334445555555555555421  1244555555555555554433322   2334455555


Q ss_pred             eCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCccc
Q 038739          234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQ  289 (477)
Q Consensus       234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~  289 (477)
                      .+++|.|..+...   ..+-+|..||+++|+|..+.  ..++++|.|+.+.|.+|.+.
T Consensus       358 ~La~N~iE~LSGL---~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIETLSGL---RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHhhhhhh---HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5555543332221   12334555555555554442  34556666666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.8e-12  Score=121.68  Aligned_cols=209  Identities=25%  Similarity=0.292  Sum_probs=96.2

Q ss_pred             CCCCCCEEecccCcCcccCC--cccCCCCCCCEEeCcCCCCCCc--ccccccCCCCccEEEccCCcCcCCCCcc-ccCCC
Q 038739           56 NLSSLKELDLSQNRFFGELP--ISMGNLGSLKVLDLSQNGYFGE--LPTSIRNLFSLEKLDLSFNNFSGEFPWS-TGNFS  130 (477)
Q Consensus        56 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~  130 (477)
                      ++.+|+++.|.++... ..+  .....|++++.|||++|-+..-  +......+++|+.|+++.|++....... -..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4555555555555443 222  2344555666666665544321  1123345556666666666554211111 11344


Q ss_pred             CCCEEEccCCCCcccC-CccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEe
Q 038739          131 SLKLLDLRSCGFWGKV-PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALD  208 (477)
Q Consensus       131 ~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~  208 (477)
                      .|+.|.++.|.++... -.....+|+|+.|++..|............++.|++|+|++|++-... ....+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            5555555555553211 112234455555555555321111122223344555555554443211 12233344444444


Q ss_pred             CcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC-----ccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEE
Q 038739          209 LAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS-----DTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFM  281 (477)
Q Consensus       209 L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~-----~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L  281 (477)
                      ++.+                          .|..+.....     ...+++|+.|++..|++..++  ..+..+++|+.|
T Consensus       278 ls~t--------------------------gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  278 LSST--------------------------GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             cccc--------------------------CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence            4444                          3333332222     114556677777777665554  345556677777


Q ss_pred             eccCCccccc
Q 038739          282 DLSDNRIQGK  291 (477)
Q Consensus       282 ~Ls~n~i~~~  291 (477)
                      .+..|.++.+
T Consensus       332 ~~~~n~ln~e  341 (505)
T KOG3207|consen  332 RITLNYLNKE  341 (505)
T ss_pred             hccccccccc
Confidence            7777776643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=7.7e-12  Score=107.22  Aligned_cols=128  Identities=30%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             ccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccc-cCCCC
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFS  107 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~  107 (477)
                      +.+..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|+++.. .+.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            34445566666666666643  2343 45666666666666652 2 2455666677777777766543 2223 34666


Q ss_pred             ccEEEccCCcCcCCC-CccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECC
Q 038739          108 LEKLDLSFNNFSGEF-PWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLG  162 (477)
Q Consensus       108 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~  162 (477)
                      |++|++++|++...- -..+..+++|+.|++.+|++.....   ..+..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777777777665311 1345566777777777776643311   134566777777643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.3e-13  Score=129.57  Aligned_cols=197  Identities=25%  Similarity=0.308  Sum_probs=159.3

Q ss_pred             CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739           33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD  112 (477)
Q Consensus        33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  112 (477)
                      +.--...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|.+||++.|++ ..+|..+..++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEE
Confidence            444567889999988 67888888889999999999987 7889999999999999999998 56777787774 89999


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +++|+++ .+|..++....|..||.+.|.+ ..+|..++.+.+|+.|.+..|++.. .|..+.. -.|..||++.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-
Confidence            9999998 7888888889999999999998 4577788999999999999999884 4555663 45889999999997 


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN  238 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  238 (477)
                      .+|-.|..|+.|++|-|.+|.+......-..-+...-.++|+..-+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            7888999999999999999998754322211222333456666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=5.5e-12  Score=112.91  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             CCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEE
Q 038739          128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTAL  207 (477)
Q Consensus       128 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  207 (477)
                      ....|+++||++|.++ .+.++..-.|+++.|++++|.+...  +.+..+++|+.||+++|.++ .+..+-..+-+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3455666666666653 3344555556666666666666532  23556666777777777665 334455566677777


Q ss_pred             eCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcch
Q 038739          208 DLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN  270 (477)
Q Consensus       208 ~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~  270 (477)
                      .+++|.+.....    +..+-+|..||+++|+|..+........+|.|+.+.+.+|.+..+++
T Consensus       358 ~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            777776654433    55666777777777777777666666677778888888888766664

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=4.1e-11  Score=124.86  Aligned_cols=110  Identities=32%  Similarity=0.435  Sum_probs=96.6

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999998999889999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCccccCC-CCCCEEEccCCCCcc
Q 038739          115 FNNFSGEFPWSTGNF-SSLKLLDLRSCGFWG  144 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~  144 (477)
                      +|.+++.+|..+... .++..+++.+|....
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999887653 467788888886533

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.18  E-value=3.1e-12  Score=116.98  Aligned_cols=162  Identities=23%  Similarity=0.255  Sum_probs=95.7

Q ss_pred             CCCCCCCCEEEccCCCCCCC----ccccccCCCCCCEEEccccc---CCcccc-------ccCCCCCCCCEEecccCcCc
Q 038739            6 LGNLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANF---LSSEWP-------ISIGNLSSLKELDLSQNRFF   71 (477)
Q Consensus         6 l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~---l~~~~~-------~~~~~l~~L~~L~Ls~n~l~   71 (477)
                      +..+..+++|+|++|.+...    +...+.+.++|+..++|+-.   ....+|       .++..+++|++||||+|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34577899999999988643    44456778899999998752   222233       34567889999999999886


Q ss_pred             ccCCc----ccCCCCCCCEEeCcCCCCCCcccccc-------------cCCCCccEEEccCCcCcCCC----CccccCCC
Q 038739           72 GELPI----SMGNLGSLKVLDLSQNGYFGELPTSI-------------RNLFSLEKLDLSFNNFSGEF----PWSTGNFS  130 (477)
Q Consensus        72 ~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~  130 (477)
                      ...+.    .+..+..|++|.|.+|.+...-...+             ..-+.|+++..++|++....    ...+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            44333    34678999999999998742211121             22345555555555553211    12233344


Q ss_pred             CCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCC
Q 038739          131 SLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       131 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      .|+.+.+..|.+...    +...+..++.|+.|||.+|.++
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            555555555444211    1123344455555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=8.2e-11  Score=100.93  Aligned_cols=81  Identities=23%  Similarity=0.369  Sum_probs=15.3

Q ss_pred             CCCCEEEccCCCCcccCCcccc-CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh-hcCCCCCEE
Q 038739          130 SSLKLLDLRSCGFWGKVPHSIG-NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTAL  207 (477)
Q Consensus       130 ~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L  207 (477)
                      ..+++|+|++|.+...  +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|.++.. ...+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEE
Confidence            3455555555555322  2233 344555555555555431  1344445555555555555422 1122 234444555


Q ss_pred             eCcCCcCc
Q 038739          208 DLAQNSYR  215 (477)
Q Consensus       208 ~L~~n~l~  215 (477)
                      ++++|++.
T Consensus        94 ~L~~N~I~  101 (175)
T PF14580_consen   94 YLSNNKIS  101 (175)
T ss_dssp             E-TTS---
T ss_pred             ECcCCcCC
Confidence            54444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.09  E-value=5.2e-11  Score=126.85  Aligned_cols=127  Identities=30%  Similarity=0.332  Sum_probs=64.2

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEccccc--CCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF--LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ...+...+-+|.+. .++... .+++|++|-+..|.  +....+..|..++.|+.|||++|.--+.+|+.++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            34444455444443 222221 22355555555553  333333345555666666665554444555555555566666


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS  139 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  139 (477)
                      +++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            66555552 4555555555555665555544333444444455555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.05  E-value=1.4e-11  Score=122.75  Aligned_cols=268  Identities=28%  Similarity=0.275  Sum_probs=166.4

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL   89 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   89 (477)
                      +.++.++...+.+...... ...+..++.+++..|.+.. .-..+..+.+|+.|++.+|++.. +...+..+++|++|++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheec
Confidence            3445555555544322111 1455666677777777764 22346777788888888887763 3333667788888888


Q ss_pred             cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCC-ccccCCCCCcEEECCCCcCCC
Q 038739           90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP-HSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      ++|.|+..  ..+..++.|+.|++++|.++. + ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus       126 s~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  126 SFNKITKL--EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cccccccc--cchhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            88887654  345666678888888888772 2 245557788888888887755433 2 4667788888888887753


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCC--CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS--QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA  246 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  246 (477)
                        ...+..+..+..+++..|.++..-+  +..+.  +|+.+++++|.+....   ..+..+..+..+++..|++......
T Consensus       201 --i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~~~~~~  273 (414)
T KOG0531|consen  201 --IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRISNLEGL  273 (414)
T ss_pred             --ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc---ccccccccccccchhhccccccccc
Confidence              2234444555555777777653221  22222  3778888888776542   1156677888888888866555443


Q ss_pred             CCccCcCcccEEEccCCCCCC---cc-h-hhhcCCCcCEEeccCCcccccCCcc
Q 038739          247 TSDTTSQKLKYIGLRSCNLTK---FP-N-FLQNQHHLRFMDLSDNRIQGKVPKW  295 (477)
Q Consensus       247 ~~~~~~~~L~~L~L~~n~l~~---~p-~-~l~~~~~L~~L~Ls~n~i~~~~p~~  295 (477)
                      ..   .+.+..+....+.+..   .. . .....+.++.+.+..|.+....+.+
T Consensus       274 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  274 ER---LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             cc---cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence            32   3456666666666531   11 1 1455678888888888887655433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=1.3e-10  Score=123.92  Aligned_cols=273  Identities=25%  Similarity=0.312  Sum_probs=168.2

Q ss_pred             CCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc--CcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR--FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        32 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      .....+...+-+|.+.. ++.. ..+++|++|-+..|.  +.......|..++.|++|||++|.-.+.+|..++.+-+|+
T Consensus       521 ~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            34677888888887763 3333 344589999999986  5434455588899999999999877788999999999999


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC--CcCCcCCCCCCCCCEEEccC
Q 038739          110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS--GDLLGPIGNLRSLEAINVAK  187 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~  187 (477)
                      +|+++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+......  ......+..+.+|+.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999998 89999999999999999988765666777777999999998776422  22223344555555555533


Q ss_pred             CccccccchhhhcCCCCC----EEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc----C-cCcccEE
Q 038739          188 CNFSGQITSSLRNLSQLT----ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT----T-SQKLKYI  258 (477)
Q Consensus       188 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~----~-~~~L~~L  258 (477)
                      ...  .+...+..+..|.    .+.+.++......   ..+..+.+|+.|.+.++.+..........    . ++++..+
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccceee---cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            322  1111122222222    2222222221111   12556677777777777554222211110    1 3344444


Q ss_pred             EccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcc
Q 038739          259 GLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL  314 (477)
Q Consensus       259 ~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l  314 (477)
                      ...+|.....+.+....++|+.|.+..+.....+.....  .+..++.+-+..+.+
T Consensus       753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k--~~~~l~~~i~~f~~~  806 (889)
T KOG4658|consen  753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK--ALLELKELILPFNKL  806 (889)
T ss_pred             HhhccccccccchhhccCcccEEEEecccccccCCCHHH--HhhhcccEEeccccc
Confidence            555555544455555667777777777665544333332  344444444444333

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.03  E-value=1.9e-11  Score=121.86  Aligned_cols=266  Identities=25%  Similarity=0.278  Sum_probs=187.7

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEc
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDL  113 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  113 (477)
                      +.++.++...+.+...-.. ...+..++.+++..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheec
Confidence            4566666666654432211 1566778888899998863 344577889999999999998644 233778999999999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC-cCCCCCCCCCEEEccCCcccc
Q 038739          114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      ++|.|+...  .+..++.|+.|++++|.+...  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus       126 s~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  126 SFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            999998443  466677899999999998543  456668999999999999985443 2 4678899999999998863


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCC--CCEEeCCCCCCcccc-ccCCccCcCcccEEEccCCCCCCcc
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKN--LEFLGLSLNRLSVLT-KATSDTTSQKLKYIGLRSCNLTKFP  269 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~ls~n~i~~~~-~~~~~~~~~~L~~L~L~~n~l~~~p  269 (477)
                        ...+..+..+..+++..|.+....+    +.....  |+.+++++|++...+ ...   .+..+..+++.++.+..+.
T Consensus       201 --i~~~~~~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~~n~i~~~~~~~~---~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  201 --IEGLDLLKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLSGNRISRSPEGLE---NLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             --ccchHHHHHHHHhhcccccceeccC----cccchhHHHHHHhcccCcccccccccc---ccccccccchhhccccccc
Confidence              2344455566666888888775544    222333  889999999877663 222   4567889999999886653


Q ss_pred             hhhhcCCCcCEEeccCCccccc---CCccCCcccCCCCCeEEecCCcccccC
Q 038739          270 NFLQNQHHLRFMDLSDNRIQGK---VPKWLLDPNMQNLNGFNFSHNLLTGFD  318 (477)
Q Consensus       270 ~~l~~~~~L~~L~Ls~n~i~~~---~p~~~~~~~l~~L~~L~Ls~N~l~~~~  318 (477)
                      . +...+.+..+....|.+...   .... .....+.++.+.+..|.+....
T Consensus       272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  272 G-LERLPKLSELWLNDNKLALSEAISQEY-ITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             c-ccccchHHHhccCcchhcchhhhhccc-cccccccccccccccCcccccc
Confidence            2 44566777777888876632   1111 0125678888888888877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.7e-10  Score=79.69  Aligned_cols=60  Identities=48%  Similarity=0.524  Sum_probs=35.1

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR   69 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~   69 (477)
                      |+|++|++++|+++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            345566666666654444555666666666666666655555555666666666666554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.4e-10  Score=78.46  Aligned_cols=60  Identities=45%  Similarity=0.537  Sum_probs=37.4

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG   93 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~   93 (477)
                      ++|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356666666666665555566666666666666666665555566666666666666664

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=9e-10  Score=109.79  Aligned_cols=126  Identities=30%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             cccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739          254 KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV  333 (477)
Q Consensus       254 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~  333 (477)
                      .|.+.+.+.|.+..+..++.-++.|+.|||++|++++..  .+.  .++.|++|||++|+++....-           ..
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l-----------~~  229 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQL-----------SM  229 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhcccccc-----------ch
Confidence            455666666666666666666667777777777766443  333  566777777777776643210           00


Q ss_pred             CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC-chhhhcccccceeecCCCcC
Q 038739          334 PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP-QCLGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       334 ~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~~L~~L~Ls~N~l  397 (477)
                      .-..|..|.+++|.++.  -..+.++++|+.||+++|-|.+.-. .-++.+. +|..|+|.||++
T Consensus       230 ~gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  230 VGCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCcc
Confidence            11136677777777764  2357889999999999998875432 2356676 899999999987

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=9.7e-10  Score=98.66  Aligned_cols=158  Identities=20%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             CCCcEEECCCCcCCC-cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCE
Q 038739          154 TQLQYLHLGSNNFSG-DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF  232 (477)
Q Consensus       154 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  232 (477)
                      +.|+++||+...++. .....+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--........+.+|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            358899999877763 2233466788999999999999888888888889999999988764433444446888999999


Q ss_pred             EeCCCCCCccccccCC-ccCcCcccEEEccCCCC----CCcchhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCe
Q 038739          233 LGLSLNRLSVLTKATS-DTTSQKLKYIGLRSCNL----TKFPNFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNG  306 (477)
Q Consensus       233 L~ls~n~i~~~~~~~~-~~~~~~L~~L~L~~n~l----~~~p~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~  306 (477)
                      |+++.+.+........ ....++|+.|+++++.-    ..+......|++|..||||+|. ++......+.  .++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~--kf~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--KFNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH--hcchhee
Confidence            9999885432221111 11456888999988742    3444445679999999999885 3332233344  7888888


Q ss_pred             EEecCCc
Q 038739          307 FNFSHNL  313 (477)
Q Consensus       307 L~Ls~N~  313 (477)
                      |.++.|.
T Consensus       343 lSlsRCY  349 (419)
T KOG2120|consen  343 LSLSRCY  349 (419)
T ss_pred             eehhhhc
Confidence            8888774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=1.4e-08  Score=91.28  Aligned_cols=188  Identities=19%  Similarity=0.233  Sum_probs=103.6

Q ss_pred             CCCCCCEEeCcCCCCCC--cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCC
Q 038739           80 NLGSLKVLDLSQNGYFG--ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQL  156 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L  156 (477)
                      .++.++.+||.+|.++.  .+...+.+++.|++|+++.|++...|...-....+|+.|-|.+..+.-. ....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35667777777777752  2334456777788888888777644432223556777777776655322 22344566777


Q ss_pred             cEEECCCCcCCCcCC--cCCCC-CCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEE
Q 038739          157 QYLHLGSNNFSGDLL--GPIGN-LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL  233 (477)
Q Consensus       157 ~~L~l~~n~l~~~~~--~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  233 (477)
                      +.|+++.|.+.....  ..... -+.+++++...|..               .+..+-|++         -.-++++..+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~---------------~~w~~~~~l---------~r~Fpnv~sv  204 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE---------------QLWLNKNKL---------SRIFPNVNSV  204 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHH---------------HHHHHHHhH---------Hhhcccchhe
Confidence            777777774432110  00110 11233333322221               111111111         2234566666


Q ss_pred             eCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCccccc
Q 038739          234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQGK  291 (477)
Q Consensus       234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~~~  291 (477)
                      -+..|.+...........++.+.-|+|+.++|.++.  +.+..++.|..|.++++.+.+.
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            666665555544444445566667777777776653  5677778888888888877643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.2e-08  Score=91.70  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739          275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS  354 (477)
Q Consensus       275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~  354 (477)
                      ++++..+-+..|.+.+.....-. ..+|.+..|+|+.|+|...                                 .--+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~s-e~~p~~~~LnL~~~~idsw---------------------------------asvD  243 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGS-EPFPSLSCLNLGANNIDSW---------------------------------ASVD  243 (418)
T ss_pred             cccchheeeecCcccchhhcccC-CCCCcchhhhhcccccccH---------------------------------HHHH
Confidence            45666666666666544322211 1455555666666555432                                 1124


Q ss_pred             hhhccCCCCeEeCCCCcCcccCCc------hhhhcccccceeecC
Q 038739          355 WICNLNILESLVLSHNNLSGLLPQ------CLGNFSDELLVLDLQ  393 (477)
Q Consensus       355 ~~~~l~~L~~LdLs~N~l~~~~p~------~l~~l~~~L~~L~Ls  393 (477)
                      .+.++++|..|.+++|.+.+.+-.      -++.++ .++.|+=+
T Consensus       244 ~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~-~v~vLNGs  287 (418)
T KOG2982|consen  244 ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT-KVQVLNGS  287 (418)
T ss_pred             HHcCCchhheeeccCCcccccccCCcceEEEEeecc-ceEEecCc
Confidence            566677788888888877644321      145566 67766633

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=2.8e-09  Score=106.34  Aligned_cols=127  Identities=24%  Similarity=0.230  Sum_probs=75.8

Q ss_pred             CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEcc
Q 038739          107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA  186 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  186 (477)
                      .|...+.++|.+. .+..++.-++.++.|+|++|+++..  +.+..+++|++|||+.|.++...--....|. |+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4666666666665 4555666666777777777776443  3566677777777777776643222333343 6777777


Q ss_pred             CCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739          187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       187 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                      +|.++..  ..+.++.+|+.||+++|-+.+..... .+..+..|+.|+|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcc
Confidence            7766532  24556666777777777665543322 244455666666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.6e-09  Score=94.36  Aligned_cols=177  Identities=21%  Similarity=0.228  Sum_probs=95.9

Q ss_pred             CccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc-CCCc-CCcCCCCCCCCCEE
Q 038739          107 SLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN-FSGD-LLGPIGNLRSLEAI  183 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L  183 (477)
                      .|++|||++..++. ..-..+..|.+|+.|.+.++++...+...++...+|+.|+++.+. ++.. ....+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46666666665542 122234556666667776666666666666666667777766643 3221 11124566677777


Q ss_pred             EccCCccccccchh-hh-cCCCCCEEeCcCCcCc-cccchhhhhcCCCCCCEEeCCCCCCcccccc--CCccCcCcccEE
Q 038739          184 NVAKCNFSGQITSS-LR-NLSQLTALDLAQNSYR-GMIELDVLLTSWKNLEFLGLSLNRLSVLTKA--TSDTTSQKLKYI  258 (477)
Q Consensus       184 ~l~~n~l~~~~~~~-l~-~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L  258 (477)
                      +++.|.+....... +. --++|+.|+++++.-. +..........+++|..||+++|  ..+...  .....++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~--v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc--cccCchHHHHHHhcchheee
Confidence            77776654322111 11 1245666777665321 11122223456777777777776  222221  112256677777


Q ss_pred             EccCCCCCCcc---hhhhcCCCcCEEeccCC
Q 038739          259 GLRSCNLTKFP---NFLQNQHHLRFMDLSDN  286 (477)
Q Consensus       259 ~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n  286 (477)
                      .++.|..- +|   -.+...|+|.+||+-++
T Consensus       344 SlsRCY~i-~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYDI-IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence            77777541 12   12456778888887665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=1.4e-08  Score=80.90  Aligned_cols=112  Identities=24%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             cccEEEccCCCCCCcchhh-hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCC
Q 038739          254 KLKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLP  332 (477)
Q Consensus       254 ~L~~L~L~~n~l~~~p~~l-~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~  332 (477)
                      .|+..++++|.+..+|..| ..++.++.|++++|+|+ .+|..+.  .++.|+.|+++.|.+.                 
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A--am~aLr~lNl~~N~l~-----------------  113 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA--AMPALRSLNLRFNPLN-----------------  113 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh--hhHHhhhcccccCccc-----------------
Confidence            3444455555555554333 23334555555555555 3344344  4455555555554443                 


Q ss_pred             CCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739          333 VPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES  405 (477)
Q Consensus       333 ~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  405 (477)
                                        ..|.-+..+.+|-.||..+|.+. ++|..+-. ++..-..++.++++.+..|...
T Consensus       114 ------------------~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  114 ------------------AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             ------------------cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCcccc
Confidence                              33455555666666666666665 44433211 1133344555666666555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=5.2e-08  Score=77.75  Aligned_cols=105  Identities=25%  Similarity=0.396  Sum_probs=77.9

Q ss_pred             cccEEEccCCCCCCcchhh---hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739          254 KLKYIGLRSCNLTKFPNFL---QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP  330 (477)
Q Consensus       254 ~L~~L~L~~n~l~~~p~~l---~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~  330 (477)
                      .+-.++|++|.+..+++..   .....|+..+|++|.+.+ .|..|.. .++.++++++++|.++               
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~-kf~t~t~lNl~~neis---------------   90 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI-KFPTATTLNLANNEIS---------------   90 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhh-ccchhhhhhcchhhhh---------------
Confidence            4556778888887666544   445567777888888873 4443331 4455666666665554               


Q ss_pred             CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739          331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l  397 (477)
                                          .+|..++.++.|+.|+++.|.+. ..|+.+..+. ++-+|+..+|.+
T Consensus        91 --------------------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l~~Lds~~na~  135 (177)
T KOG4579|consen   91 --------------------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KLDMLDSPENAR  135 (177)
T ss_pred             --------------------hchHHHhhhHHhhhcccccCccc-cchHHHHHHH-hHHHhcCCCCcc
Confidence                                57889999999999999999998 7788888888 899999988875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=1.4e-07  Score=84.02  Aligned_cols=86  Identities=28%  Similarity=0.393  Sum_probs=42.5

Q ss_pred             CCCCCEEEccCCCCCCCcc----ccccCCCCCCEEEcccccCC---ccc-------cccCCCCCCCCEEecccCcCcccC
Q 038739            9 LSKLLHLDLSLNELQGELP----VSVGNLHSLEELDLSANFLS---SEW-------PISIGNLSSLKELDLSQNRFFGEL   74 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~   74 (477)
                      +..++.++||+|-|...-.    ..+.+-++|+..+++.-...   ..+       ..++.+||+|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4456666666666653322    22334455666665543111   111       123445666666666666554333


Q ss_pred             Cc----ccCCCCCCCEEeCcCCCC
Q 038739           75 PI----SMGNLGSLKVLDLSQNGY   94 (477)
Q Consensus        75 ~~----~~~~l~~L~~L~Ls~n~l   94 (477)
                      |.    .+++-+.|.+|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            32    234445566666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=7.2e-07  Score=79.52  Aligned_cols=18  Identities=17%  Similarity=0.084  Sum_probs=12.6

Q ss_pred             CCCcCEEeccCCcccccC
Q 038739          275 QHHLRFMDLSDNRIQGKV  292 (477)
Q Consensus       275 ~~~L~~L~Ls~n~i~~~~  292 (477)
                      .++|..|-..+|.+.+.+
T Consensus       271 ~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         271 VPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             CCCccccccchhhhcCce
Confidence            567788888888766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=4.5e-06  Score=53.89  Aligned_cols=37  Identities=46%  Similarity=0.629  Sum_probs=20.5

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCC
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLS   47 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   47 (477)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35566666666665 34444666666666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=5.5e-06  Score=53.48  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=27.6

Q ss_pred             cccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccc
Q 038739          254 KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG  290 (477)
Q Consensus       254 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~  290 (477)
                      +|++|++++|+|+.+|..+.++++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            5778888888888887767788888888888887773

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1e-05  Score=69.21  Aligned_cols=86  Identities=26%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             hhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcch----hhh
Q 038739          198 LRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN----FLQ  273 (477)
Q Consensus       198 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~----~l~  273 (477)
                      |..++.|..|.+.+|+++.+.+.-  ...+++|+.|.+.+|+|..+++......+++|++|.+-+|.++.-..    .+.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCcceeeccch--hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence            334444444444444444433322  23344455555555555555544444444555555555555533321    233


Q ss_pred             cCCCcCEEeccC
Q 038739          274 NQHHLRFMDLSD  285 (477)
Q Consensus       274 ~~~~L~~L~Ls~  285 (477)
                      .+++|+.||++.
T Consensus       138 klp~l~~LDF~k  149 (233)
T KOG1644|consen  138 KLPSLRTLDFQK  149 (233)
T ss_pred             ecCcceEeehhh
Confidence            455555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=2.8e-05  Score=75.26  Aligned_cols=135  Identities=16%  Similarity=0.255  Sum_probs=86.0

Q ss_pred             hcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCC-CCCCcchhhhcCCCcCEEeccCC-cccccCCccCCcccC
Q 038739          224 LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC-NLTKFPNFLQNQHHLRFMDLSDN-RIQGKVPKWLLDPNM  301 (477)
Q Consensus       224 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n-~l~~~p~~l~~~~~L~~L~Ls~n-~i~~~~p~~~~~~~l  301 (477)
                      +..+.+++.|++++|.++.++..     +++|++|.+++| .++.+|..+  .++|+.|++++| .+. .+|        
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP--------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVL-----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP--------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCC-----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc--------
Confidence            44578999999999988777632     357999999986 457788655  468999999998 443 333        


Q ss_pred             CCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc--cCCChhhhcc-CCCCeEeCCCCcCcccCCc
Q 038739          302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT--GEIPSWICNL-NILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       302 ~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~--~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~  378 (477)
                      ++|+.|+++.+....              ++..+++|+.|.+.+++..  ..+|.   .+ ++|++|++++|... ..|.
T Consensus       112 ~sLe~L~L~~n~~~~--------------L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~  173 (426)
T PRK15386        112 ESVRSLEIKGSATDS--------------IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPE  173 (426)
T ss_pred             cccceEEeCCCCCcc--------------cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcc
Confidence            457778887766542              2333456666666432211  01111   12 46777777777655 3443


Q ss_pred             hhhhcccccceeecCCC
Q 038739          379 CLGNFSDELLVLDLQGN  395 (477)
Q Consensus       379 ~l~~l~~~L~~L~Ls~N  395 (477)
                      .   +|++|+.|+++.|
T Consensus       174 ~---LP~SLk~L~ls~n  187 (426)
T PRK15386        174 K---LPESLQSITLHIE  187 (426)
T ss_pred             c---ccccCcEEEeccc
Confidence            2   3347777777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.97  E-value=2.5e-05  Score=64.15  Aligned_cols=84  Identities=19%  Similarity=0.195  Sum_probs=30.4

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      +|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +......+|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344445555555543 233333334445545555555443 3333333444444455555533 2222222334444444


Q ss_pred             CEEeCcC
Q 038739           85 KVLDLSQ   91 (477)
Q Consensus        85 ~~L~Ls~   91 (477)
                      +.+++..
T Consensus        84 ~~i~~~~   90 (129)
T PF13306_consen   84 KNIDIPS   90 (129)
T ss_dssp             CEEEETT
T ss_pred             cccccCc
Confidence            4444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.93  E-value=2.8e-05  Score=75.28  Aligned_cols=136  Identities=22%  Similarity=0.255  Sum_probs=85.6

Q ss_pred             CCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccC-cCcccCCcccCCCCCCC
Q 038739            7 GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN-RFFGELPISMGNLGSLK   85 (477)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~   85 (477)
                      ..++++++|++++|.++ .+|.   --.+|++|.+++|.--..+|..+  .++|++|++++| .+. .+|      .+|+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence            45688999999999887 4451   12469999998854434556544  257999999988 443 444      3577


Q ss_pred             EEeCcCCCCCCcccccccCC-CCccEEEccCCcCc--CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739           86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFS--GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG  162 (477)
Q Consensus        86 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  162 (477)
                      .|+++.+....     +..+ ++|+.|.+.+++..  ..+|..+  .++|++|++++|... ..|..+.  .+|+.|+++
T Consensus       116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            77777655421     2222 25777777543311  1112111  268999999998764 3444444  589999998


Q ss_pred             CCc
Q 038739          163 SNN  165 (477)
Q Consensus       163 ~n~  165 (477)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.87  E-value=4.3e-05  Score=62.78  Aligned_cols=123  Identities=19%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739           28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS  107 (477)
Q Consensus        28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  107 (477)
                      ..|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3466666777777664 355455556666666777766654 4434444566666666666654 332233345555666


Q ss_pred             ccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739          108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL  156 (477)
Q Consensus       108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  156 (477)
                      |+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666543 332333344444 555555543 2223333444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=4e-05  Score=65.69  Aligned_cols=104  Identities=20%  Similarity=0.209  Sum_probs=46.1

Q ss_pred             cEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCC
Q 038739          157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS  236 (477)
Q Consensus       157 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls  236 (477)
                      ..+|+++|.+..  ...|..++.|.+|.+.+|.|+.+.|.--.-+++|+.|.+.+|.+....... -+..||.|++|.+-
T Consensus        45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTLL  121 (233)
T ss_pred             ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeeec
Confidence            344444444431  123344444445555555444433333333444555555555444322221 14445555555555


Q ss_pred             CCCCccccccCCcc--CcCcccEEEccCC
Q 038739          237 LNRLSVLTKATSDT--TSQKLKYIGLRSC  263 (477)
Q Consensus       237 ~n~i~~~~~~~~~~--~~~~L~~L~L~~n  263 (477)
                      +|.+.....+-...  .+|+|+.||+..-
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            55444333322221  4556666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=6.3e-06  Score=86.29  Aligned_cols=61  Identities=11%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccc-cCCccCCcccCCCCCeEEecCCcc
Q 038739          251 TSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG-KVPKWLLDPNMQNLNGFNFSHNLL  314 (477)
Q Consensus       251 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~-~~p~~~~~~~l~~L~~L~Ls~N~l  314 (477)
                      .+++|..||+++++++.+ ..++.+++|+.|.+.+=.+.. ..-..++  .+.+|+.||+|....
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDISRDKN  232 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh--cccCCCeeecccccc
Confidence            445555555555555544 345555666665555544432 1111222  566666666665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.61  E-value=2.1e-06  Score=81.17  Aligned_cols=36  Identities=17%  Similarity=0.034  Sum_probs=21.3

Q ss_pred             ccceeecCCCcCc-cCCChhhhccCCCCeEeCCCCcC
Q 038739          337 GTITYLASNNSLT-GEIPSWICNLNILESLVLSHNNL  372 (477)
Q Consensus       337 ~l~~L~ls~n~l~-~~~p~~~~~l~~L~~LdLs~N~l  372 (477)
                      .+..+.++++..+ +..-+.+..+++|+.+++-.++-
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            3444444444432 23445566778888888888754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=2.6e-05  Score=81.70  Aligned_cols=134  Identities=21%  Similarity=0.276  Sum_probs=67.1

Q ss_pred             CCCCEEecccCcCc-ccCCccc-CCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCccccCCCCCCE
Q 038739           58 SSLKELDLSQNRFF-GELPISM-GNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKL  134 (477)
Q Consensus        58 ~~L~~L~Ls~n~l~-~~~~~~~-~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  134 (477)
                      .+|++||+++.... ...|..+ ..+|+|+.|.+++-.+... .-....++++|..||+|+++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666664332 1112222 2356666666666444221 223344566666666666666522  45556666666


Q ss_pred             EEccCCCCcc-cCCccccCCCCCcEEECCCCcCCCcC------CcCCCCCCCCCEEEccCCccccc
Q 038739          135 LDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFSGDL------LGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       135 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      |.+.+=.+.. ..-..+.++++|+.||+|........      .+.-..+|+|+.||.|+..+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6665544322 11123455666666666665433211      11122356677777776655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.53  E-value=2.5e-06  Score=80.56  Aligned_cols=280  Identities=20%  Similarity=0.137  Sum_probs=129.3

Q ss_pred             CccEEEccCCcCcCCCC--ccccCCCCCCEEEccCCCCcc-cCCccc-cCCCCCcEEECCCC-cCCCcCCc-CCCCCCCC
Q 038739          107 SLEKLDLSFNNFSGEFP--WSTGNFSSLKLLDLRSCGFWG-KVPHSI-GNFTQLQYLHLGSN-NFSGDLLG-PIGNLRSL  180 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~-~~~~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L  180 (477)
                      .|+.|.+.++.-.+.-+  ....+++++++|++.+|.... ..-..+ ..+++|++|++..| .++..... ....|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45666666554322111  123356666666666654211 100111 24556666666663 23322211 22346666


Q ss_pred             CEEEccCCc-cccc-cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCC-CccccccCCccCcCcccE
Q 038739          181 EAINVAKCN-FSGQ-ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR-LSVLTKATSDTTSQKLKY  257 (477)
Q Consensus       181 ~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~~L~~  257 (477)
                      ++++++.|. +++. +.....+++.++.+.+.++.-.+.......-..+..+..+++.++. ++..+.......+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            666666663 2221 1223345555555555554322222222122334445555555541 111111111225566777


Q ss_pred             EEccCCCC-CCcc--hhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739          258 IGLRSCNL-TKFP--NFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV  333 (477)
Q Consensus       258 L~L~~n~l-~~~p--~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~  333 (477)
                      |+.+++.- +..+  .--.++++|+.+.++.++ +++.-...+. .+++.|+.+++..+.....-        ....+..
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~--------tL~sls~  369 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDG--------TLASLSR  369 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhh--------hHhhhcc
Confidence            77766643 2221  223456777777777775 3322222222 15566776666665432110        0011223


Q ss_pred             CCCccceeecCCCcCccCC-----ChhhhccCCCCeEeCCCCcCccc-CCchhhhcccccceeecCCCc
Q 038739          334 PPPGTITYLASNNSLTGEI-----PSWICNLNILESLVLSHNNLSGL-LPQCLGNFSDELLVLDLQGNN  396 (477)
Q Consensus       334 ~~~~l~~L~ls~n~l~~~~-----p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~  396 (477)
                      ..+.++.+.++++.....-     ...-+.+..|+.+.|+++..+.. .-..+...+ .|+.+++-+++
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q  437 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQ  437 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechh
Confidence            3455666666665433111     22234567788888888766422 223344444 67776666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.46  E-value=6e-05  Score=67.38  Aligned_cols=112  Identities=29%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             ccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccC--cCcccCCcccCCCCCCCEEeCcCCCCCCc-ccccc
Q 038739           26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN--RFFGELPISMGNLGSLKVLDLSQNGYFGE-LPTSI  102 (477)
Q Consensus        26 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l  102 (477)
                      +......+..|+.|++.+..++..  ..|-.+++|++|.++.|  ++.+.++-....+++|++|++++|++... .-..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            444555667788888888777643  34667888999999999  55555555556679999999999987521 01234


Q ss_pred             cCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEccC
Q 038739          103 RNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDLRS  139 (477)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~  139 (477)
                      ..+.+|..|++.+|..+....   ..|.-+++|++|+-..
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            566778888888887764211   2344567787776544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=9.5e-05  Score=66.13  Aligned_cols=107  Identities=25%  Similarity=0.350  Sum_probs=58.4

Q ss_pred             CCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCccc
Q 038739          177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLK  256 (477)
Q Consensus       177 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~  256 (477)
                      ...|+.+.+.+..++.  -..+-.+++|++|.++.|..............+++|+++++++|+|+.+........+.+|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3444444444444432  11234456666777777633322222222455577777777777776655555444556677


Q ss_pred             EEEccCCCCCCcc----hhhhcCCCcCEEeccC
Q 038739          257 YIGLRSCNLTKFP----NFLQNQHHLRFMDLSD  285 (477)
Q Consensus       257 ~L~L~~n~l~~~p----~~l~~~~~L~~L~Ls~  285 (477)
                      .|++.+|..+.+-    ..+.-+++|++||-..
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7777777665442    2344566666665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=6.2e-05  Score=76.88  Aligned_cols=16  Identities=38%  Similarity=0.474  Sum_probs=9.5

Q ss_pred             hhcCCCCCEEeCcCCc
Q 038739          198 LRNLSQLTALDLAQNS  213 (477)
Q Consensus       198 l~~l~~L~~L~L~~n~  213 (477)
                      ...+++++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            4456666666666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.97  E-value=7e-05  Score=76.50  Aligned_cols=80  Identities=25%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc-C
Q 038739          174 IGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT-T  251 (477)
Q Consensus       174 l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~  251 (477)
                      ...++.++.+.+..+...... ...+.+++.|+ ..+..           .......++.|+++.+............ .
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~-----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~  425 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL-----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADS  425 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH-----------HhccCCccceEecccCccccccchHHHhhh
Confidence            456777888888777643322 24455666552 22111           1222233777777776322222111111 1


Q ss_pred             cCcccEEEccCCCC
Q 038739          252 SQKLKYIGLRSCNL  265 (477)
Q Consensus       252 ~~~L~~L~L~~n~l  265 (477)
                      +..+..+++.++..
T Consensus       426 ~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRV  439 (482)
T ss_pred             hhccccCCccCccc
Confidence            44566666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=8.9e-05  Score=66.71  Aligned_cols=11  Identities=27%  Similarity=0.386  Sum_probs=5.1

Q ss_pred             hhcCCCcCEEe
Q 038739          272 LQNQHHLRFMD  282 (477)
Q Consensus       272 l~~~~~L~~L~  282 (477)
                      +..+|+|+.||
T Consensus       113 LR~LPnLkKLD  123 (388)
T KOG2123|consen  113 LRVLPNLKKLD  123 (388)
T ss_pred             HHHcccchhcc
Confidence            33445555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.00014  Score=65.45  Aligned_cols=101  Identities=23%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             CCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCc
Q 038739          201 LSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHL  278 (477)
Q Consensus       201 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L  278 (477)
                      +.+.++|++.++.+..+.-    ...++.|+.|.|+-|.|+.+....   .|.+|++|+|..|.|..+.  ..+.++++|
T Consensus        18 l~~vkKLNcwg~~L~DIsi----c~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI----CEKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHHHH----HHhcccceeEEeeccccccchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            3455667777776654432    456777777777777665554433   4567888888888887765  467889999


Q ss_pred             CEEeccCCcccccCCccCCc---ccCCCCCeEE
Q 038739          279 RFMDLSDNRIQGKVPKWLLD---PNMQNLNGFN  308 (477)
Q Consensus       279 ~~L~Ls~n~i~~~~p~~~~~---~~l~~L~~L~  308 (477)
                      +.|.|..|.-.+..+.....   ..+|+|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999999877665542210   1467888775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0016  Score=34.89  Aligned_cols=20  Identities=45%  Similarity=0.549  Sum_probs=11.7

Q ss_pred             CCCeEeCCCCcCcccCCchhh
Q 038739          361 ILESLVLSHNNLSGLLPQCLG  381 (477)
Q Consensus       361 ~L~~LdLs~N~l~~~~p~~l~  381 (477)
                      +|++|||++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566666666666 5555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.40  E-value=0.0075  Score=32.28  Aligned_cols=12  Identities=67%  Similarity=0.736  Sum_probs=4.9

Q ss_pred             CCEEEcccccCC
Q 038739           36 LEELDLSANFLS   47 (477)
Q Consensus        36 L~~L~Ls~n~l~   47 (477)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.31  E-value=0.00015  Score=72.79  Aligned_cols=182  Identities=25%  Similarity=0.283  Sum_probs=103.2

Q ss_pred             CCEEEcccccCCcccc----ccCCCCCCCCEEecccCcCcccCC----cccCCC-CCCCEEeCcCCCCCCc----ccccc
Q 038739           36 LEELDLSANFLSSEWP----ISIGNLSSLKELDLSQNRFFGELP----ISMGNL-GSLKVLDLSQNGYFGE----LPTSI  102 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l  102 (477)
                      +..|.|.+|.+.....    ..+...+.|+.|++++|.+.+.--    ..+... ..+++|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5666666666654322    234556666667777766652211    112222 4456666666666543    33445


Q ss_pred             cCCCCccEEEccCCcCcC----CCCccc----cCCCCCCEEEccCCCCcccC----CccccCCCC-CcEEECCCCcCCCc
Q 038739          103 RNLFSLEKLDLSFNNFSG----EFPWST----GNFSSLKLLDLRSCGFWGKV----PHSIGNFTQ-LQYLHLGSNNFSGD  169 (477)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~----~~~~~~----~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~-L~~L~l~~n~l~~~  169 (477)
                      .....++.++++.|.+..    .++..+    ....++++|.+++|.++...    ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            556667777777776531    112222    23566777777777664221    123344444 66688888877643


Q ss_pred             C----CcCCCCC-CCCCEEEccCCcccccc----chhhhcCCCCCEEeCcCCcCccc
Q 038739          170 L----LGPIGNL-RSLEAINVAKCNFSGQI----TSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       170 ~----~~~l~~l-~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                      .    ...+..+ ..+++++++.|.++...    ...+..++.++.+.++.|.+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            1    1223334 56788888888887543    34556677888888888887643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.31  E-value=0.024  Score=28.14  Aligned_cols=13  Identities=46%  Similarity=0.544  Sum_probs=6.3

Q ss_pred             CCCeEeCCCCcCc
Q 038739          361 ILESLVLSHNNLS  373 (477)
Q Consensus       361 ~L~~LdLs~N~l~  373 (477)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4666666666655

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.18  E-value=0.00026  Score=71.13  Aligned_cols=185  Identities=25%  Similarity=0.248  Sum_probs=118.7

Q ss_pred             CCEEecccCcCcccC----CcccCCCCCCCEEeCcCCCCCCccc----ccccCC-CCccEEEccCCcCcCC----CCccc
Q 038739           60 LKELDLSQNRFFGEL----PISMGNLGSLKVLDLSQNGYFGELP----TSIRNL-FSLEKLDLSFNNFSGE----FPWST  126 (477)
Q Consensus        60 L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~  126 (477)
                      +..|.|.+|.+....    -..+...+.|+.|++++|.+.+.-.    ..+... ..|++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            788888888876432    2345667888899999998863321    222332 5677788888877643    34455


Q ss_pred             cCCCCCCEEEccCCCCcc----cCCcccc----CCCCCcEEECCCCcCCCcCC----cCCCCCCC-CCEEEccCCccccc
Q 038739          127 GNFSSLKLLDLRSCGFWG----KVPHSIG----NFTQLQYLHLGSNNFSGDLL----GPIGNLRS-LEAINVAKCNFSGQ  193 (477)
Q Consensus       127 ~~l~~L~~L~L~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~l~~~~~----~~l~~l~~-L~~L~l~~n~l~~~  193 (477)
                      .....++.++++.|.+..    .++..+.    ...++++|.+++|.++....    ..+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            567788888888887731    1222233    46678889998888763211    12333344 66688888887644


Q ss_pred             c----chhhhcC-CCCCEEeCcCCcCccccc--hhhhhcCCCCCCEEeCCCCCCcccc
Q 038739          194 I----TSSLRNL-SQLTALDLAQNSYRGMIE--LDVLLTSWKNLEFLGLSLNRLSVLT  244 (477)
Q Consensus       194 ~----~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~  244 (477)
                      .    ...+..+ ..+++++++.|.+.....  .......++.++.+.++.|.+....
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence            2    2334444 677889999998875432  2234566778899999988665444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.63  E-value=0.048  Score=27.02  Aligned_cols=12  Identities=33%  Similarity=0.484  Sum_probs=3.7

Q ss_pred             ccEEEccCCCCC
Q 038739          255 LKYIGLRSCNLT  266 (477)
Q Consensus       255 L~~L~L~~n~l~  266 (477)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.20  E-value=0.0011  Score=58.36  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739           28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS  107 (477)
Q Consensus        28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  107 (477)
                      ..+......+.||++.|++.. .-..|+-++.|..||++.|.+. ..|..++++..+..+++..|.. ...|.++...++
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCC
Confidence            345666777778887777653 2334666677777788777775 6677777777777777777766 466777777788


Q ss_pred             ccEEEccCCcCc
Q 038739          108 LEKLDLSFNNFS  119 (477)
Q Consensus       108 L~~L~Ls~n~l~  119 (477)
                      ++++++-.|.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            888777777654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.20  E-value=0.04  Score=30.06  Aligned_cols=19  Identities=32%  Similarity=0.284  Sum_probs=11.0

Q ss_pred             CCCCeEeCCCCcCcccCCc
Q 038739          360 NILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       360 ~~L~~LdLs~N~l~~~~p~  378 (477)
                      ++|++|+|++|+|++....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            5677777777777654443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.29  E-value=0.16  Score=28.23  Aligned_cols=19  Identities=53%  Similarity=0.586  Sum_probs=14.0

Q ss_pred             cCCCCeEeCCCCcCcccCCc
Q 038739          359 LNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       359 l~~L~~LdLs~N~l~~~~p~  378 (477)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888888888888 4444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.29  E-value=0.16  Score=28.23  Aligned_cols=19  Identities=53%  Similarity=0.586  Sum_probs=14.0

Q ss_pred             cCCCCeEeCCCCcCcccCCc
Q 038739          359 LNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       359 l~~L~~LdLs~N~l~~~~p~  378 (477)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            467888888888888 4444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.34  E-value=0.0042  Score=54.77  Aligned_cols=89  Identities=27%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             ccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCC
Q 038739           52 ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSS  131 (477)
Q Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  131 (477)
                      ..+......+.||++.|++. ..-..|.-++.|..||++.|.+ ...|..+.....+..+++..|..+ ..|.++...+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34566677889999998876 4455667778888899998887 467778888888888888888887 78888989999


Q ss_pred             CCEEEccCCCCc
Q 038739          132 LKLLDLRSCGFW  143 (477)
Q Consensus       132 L~~L~L~~n~~~  143 (477)
                      ++++++.++.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.24  E-value=0.35  Score=26.80  Aligned_cols=14  Identities=50%  Similarity=0.596  Sum_probs=6.8

Q ss_pred             CCCCEEEccCCCCC
Q 038739           10 SKLLHLDLSLNELQ   23 (477)
Q Consensus        10 ~~L~~L~L~~n~l~   23 (477)
                      ++|++|+|++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.24  E-value=0.35  Score=26.80  Aligned_cols=14  Identities=50%  Similarity=0.596  Sum_probs=6.8

Q ss_pred             CCCCEEEccCCCCC
Q 038739           10 SKLLHLDLSLNELQ   23 (477)
Q Consensus        10 ~~L~~L~L~~n~l~   23 (477)
                      ++|++|+|++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=88.79  E-value=2.4  Score=41.86  Aligned_cols=88  Identities=17%  Similarity=0.057  Sum_probs=42.4

Q ss_pred             CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc---cccCC----c-cCcCcccEEEccCCCCCCcc----h
Q 038739          203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL---TKATS----D-TTSQKLKYIGLRSCNLTKFP----N  270 (477)
Q Consensus       203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~---~~~~~----~-~~~~~L~~L~L~~n~l~~~p----~  270 (477)
                      .+++|....|.+.+..........-+..+.+++....-..+   +....    . ...--+..+.++.|.+..-+    .
T Consensus       355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in  434 (553)
T KOG4242|consen  355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN  434 (553)
T ss_pred             eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence            36666666666554433222233444555555543211000   00000    0 01223666777777764333    2


Q ss_pred             hhhcCCCcCEEeccCCcccc
Q 038739          271 FLQNQHHLRFMDLSDNRIQG  290 (477)
Q Consensus       271 ~l~~~~~L~~L~Ls~n~i~~  290 (477)
                      .+..-+.+..|++++|...+
T Consensus       435 ~l~stqtl~kldisgn~mgd  454 (553)
T KOG4242|consen  435 KLLSTQTLAKLDISGNGMGD  454 (553)
T ss_pred             hhccCcccccccccCCCccc
Confidence            33445677788888876653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.30  E-value=0.067  Score=46.41  Aligned_cols=82  Identities=26%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccC-Cccc-CCCCCCCEEeCcCCC-CCCcccccccCCCCccE
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL-PISM-GNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEK  110 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~  110 (477)
                      ..++.+|-+++.|..+.-+.+.+++.++.|.+.+|.-.+.. -+.+ .-.++|+.|++++|. |++.--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            35677888888777665566777777888887777432110 0111 134788888888774 44433355667778887


Q ss_pred             EEccC
Q 038739          111 LDLSF  115 (477)
Q Consensus       111 L~Ls~  115 (477)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            77764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.74  E-value=0.21  Score=43.43  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             CCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739          179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS  213 (477)
Q Consensus       179 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  213 (477)
                      .++.++-+++.|....-+.+..++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            35566666666655545555555666666655554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.71  E-value=0.61  Score=46.75  Aligned_cols=82  Identities=23%  Similarity=0.242  Sum_probs=52.3

Q ss_pred             cCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC--CCccccccCCccCcCcccEEEccCCCC-CCcc---hh--
Q 038739          200 NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN--RLSVLTKATSDTTSQKLKYIGLRSCNL-TKFP---NF--  271 (477)
Q Consensus       200 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n--~i~~~~~~~~~~~~~~L~~L~L~~n~l-~~~p---~~--  271 (477)
                      +.+.+..+.|++|++.............|+|++|+|++|  .+....+.... ....|++|.+.+|.+ +.+-   ..  
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHH
Confidence            456777888888888766665555667888899999988  33222222222 344688889999988 3332   11  


Q ss_pred             --hhcCCCcCEEe
Q 038739          272 --LQNQHHLRFMD  282 (477)
Q Consensus       272 --l~~~~~L~~L~  282 (477)
                        -..+|+|..||
T Consensus       295 ~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  295 AIRELFPKLLRLD  307 (585)
T ss_pred             HHHHhcchheeec
Confidence              22467776665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.63  E-value=0.88  Score=25.28  Aligned_cols=18  Identities=39%  Similarity=0.573  Sum_probs=12.6

Q ss_pred             CCCCeEeCCCCcCcccCCc
Q 038739          360 NILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       360 ~~L~~LdLs~N~l~~~~p~  378 (477)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35778888888887 4553

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.74  E-value=1.2  Score=24.81  Aligned_cols=15  Identities=47%  Similarity=0.567  Sum_probs=11.6

Q ss_pred             cCCCCeEeCCCCcCc
Q 038739          359 LNILESLVLSHNNLS  373 (477)
Q Consensus       359 l~~L~~LdLs~N~l~  373 (477)
                      +++|+.|+|++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356888888888886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-24
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-24
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-06
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		8e-06
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		6e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		8e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 28  VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
           V V    +LE LD+S+N  S+  P  +G+ S+L+ LD+S N+  G+   ++     LK+L
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 88  DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV 146
           ++S N + G +P     L SL+ L L+ N F+GE P + +G   +L  LDL    F+G V
Sbjct: 250 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 147 PHSIGNFTQLQYLHLGSNNFSGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-L 204
           P   G+ + L+ L L SNNFSG+L +  +  +R L+ ++++   FSG++  SL NLS  L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
             LDL+ N++ G I  ++       L+ L L  N  +                       
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT----------------------- 404
Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXX 324
             K P  L N   L  + LS N + G +P  L   ++  L       N+L G        
Sbjct: 405 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 325 XXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
                          T +   N LTGEIPS + N   L  + LS+N L+G +P+ +G   
Sbjct: 462 VKTLE----------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 510
Query: 385 DELLVLDLQGN----NLPLSKG-CES 405
           + L +L L  N    N+P   G C S
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRS 536

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 28  VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
           V V    +LE LD+S+N  S+  P  +G+ S+L+ LD+S N+  G+   ++     LK+L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 88  DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV 146
           ++S N + G +P     L SL+ L L+ N F+GE P + +G   +L  LDL    F+G V
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 147 PHSIGNFTQLQYLHLGSNNFSGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-L 204
           P   G+ + L+ L L SNNFSG+L +  +  +R L+ ++++   FSG++  SL NLS  L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
             LDL+ N++ G I  ++       L+ L L  N  +                       
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT----------------------- 407
Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXX 324
             K P  L N   L  + LS N + G +P  L   ++  L       N+L G        
Sbjct: 408 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 325 XXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
                          T +   N LTGEIPS + N   L  + LS+N L+G +P+ +G   
Sbjct: 465 VKTLE----------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 513
Query: 385 DELLVLDLQGN----NLPLSKG-CES 405
           + L +L L  N    N+P   G C S
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRS 539

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 119/286 (41%), Gaps = 56/286 (19%)
Query: 34  HSLEELDLSANFLSSEWPI--SIGNLSSLKELDLSQ-NRFFGELPISMGNLGSLKVLDLS 90
           + +  LDLS   L   +PI  S+ NL  L  L +   N   G +P ++  L  L  L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 91  QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
                G +P  +  + +L  LD S+N  SG  P S  +  +L  +        G +P S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLA 210
           G+F++L                         ++ +++   +G+I  +  NL+ L  +DL+
Sbjct: 170 GSFSKL-----------------------FTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN 270
           +N   G  +  VL  S KN + + L+ N L+             L  +GL          
Sbjct: 206 RNMLEG--DASVLFGSDKNTQKIHLAKNSLAF-----------DLGKVGL---------- 242
Query: 271 FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG 316
                 +L  +DL +NRI G +P+ L    ++ L+  N S N L G
Sbjct: 243 ----SKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCG 282

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 18/235 (7%)
Query: 146 VPHSIGNFTQLQYLHLGS-NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQL 204
           +P S+ N   L +L++G  NN  G +   I  L  L  + +   N SG I   L  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
             LD + N+  G +   +  +S  NL  +    NR+S     +  + S+    + +    
Sbjct: 128 VTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 265 LT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXX 323
           LT K P    N + L F+DLS N ++G     +L  + +N    + + N L  FD     
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSL-AFDLGKVG 241
Query: 324 XXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378
                                NN + G +P  +  L  L SL +S NNL G +PQ
Sbjct: 242 LSKNLNGLDL----------RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 13/196 (6%)
Query: 28  VSVGNLHSLEELDLSANFLSSEWPI-SIGNLSSLKELDLSQNRFFGE--LPISMGNLGSL 84
           +S  N  SL  L +  N       +  +  L +L+ LDLS N         + + NL  L
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 85  KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWST-GNFSSLKLLDLRSCGFW 143
           + L+LS N   G    + +    LE LDL+F       P S   N   L++L+L  C   
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
Query: 144 GKVPHSIGNFTQLQYLHLGSNNFSG------DLLGPIGNLRSLEAINVAKCNFSGQITSS 197
               H +     L++L+L  N+F        +LL  +G   SLE + ++ C        +
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVG---SLEVLILSSCGLLSIDQQA 492
Query: 198 LRNLSQLTALDLAQNS 213
             +L +++ +DL+ NS
Sbjct: 493 FHSLGKMSHVDLSHNS 508

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 40/271 (14%)
Query: 30  VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL 89
           +G    +++ D+S+  L     +S+      + L+L ++RF      +      L+ LDL
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 90  SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS 149
           +     G LP+ ++ L  L+KL LS N+F      S  NF SL  L +R           
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR----------- 330
Query: 150 IGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE----AINVAKCNFSGQITSSLRNLSQLT 205
            GN   ++ LHLG        L  +GNL++L+     I  + C      +  L+NLS L 
Sbjct: 331 -GN---VKKLHLGVG-----CLEKLGNLQTLDLSHNDIEASDC-----CSLQLKNLSHLQ 376
Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
            L+L+ N   G+            LE L L+  RL +    +       L+ + L  C L
Sbjct: 377 TLNLSHNEPLGL--QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 266 -TKFPNFLQNQHHLRFMDLSDNRIQ-GKVPK 294
            T   + L     LR ++L  N  Q G + K
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITK 465

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 26  LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE----LDLSQNRF----FGELPIS 77
           LP S+ +L+ L EL + A    +E P  + +  +  E    ++L   R        LP S
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 78  MGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDL 137
           + NL +LK L + +N     L  +I +L  LE+LDL        +P   G  + LK L L
Sbjct: 202 IANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 138 RSCGFWGKVPHSIGNFTQLQYLHL-GSNNFS 167
           + C     +P  I   TQL+ L L G  N S
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 18/240 (7%)
Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
           NL +L  L+LS+N +S    +S   L+SL++L+ S N+     P  + NL +L+ LD+S 
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92  NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
           N       + +  L +LE L  + N  S   P   G  ++L  L L   G   K   ++ 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
           + T L  L L +N  S   L P+  L  L  + +     S    S L  L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
           N    +  +    ++ KNL +L L  N +S ++  +S T  Q+L +   +  +++   N 
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
           NL +L  L+LS+N +S    +S   L+SL++L  S N+     P  + NL +L+ LD+S 
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92  NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
           N       + +  L +LE L  + N  S   P   G  ++L  L L   G   K   ++ 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
           + T L  L L +N  S   L P+  L  L  + +     S    S L  L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
           N    +  +    ++ KNL +L L  N +S ++  +S T  Q+L +   +  +++   N 
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
           NL +L  L+LS+N +S    +S   L+SL++L  S N+     P  + NL +L+ LD+S 
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92  NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
           N       + +  L +LE L  + N  S   P   G  ++L  L L   G   K   ++ 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
           + T L  L L +N  S   L P+  L  L  + +     S    S L  L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
           N    +  +    ++ KNL +L L  N +S ++  +S T  Q+L +   +  +++   N 
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 111/271 (40%), Gaps = 86/271 (31%)
Query: 36  LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGY 94
           LEEL+L+ N +S+  P +  NL +L+ L L  NR    +P+ +   L +L  LD+S+N  
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
              L    ++L++L+ L++  N+                                     
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL------------------------------------ 140
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ--- 211
               +++    FSG        L SLE + + KCN +   T +L +L  L  L L     
Sbjct: 141 ----VYISHRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 212 -----NSYRGMIELDVL-LTSWKNLEFL------GLSLNRLSVLTKATSDTTSQKLKYIG 259
                 S++ +  L VL ++ W  L+ +      GL+L  LS+                 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT---------------- 232
Query: 260 LRSCNLTKFPNFLQNQH--HLRFMDLSDNRI 288
              CNLT  P +L  +H  +LRF++LS N I
Sbjct: 233 --HCNLTAVP-YLAVRHLVYLRFLNLSYNPI 260

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 126/302 (41%), Gaps = 48/302 (15%)
Query: 26  LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLGSL 84
           LP  +  ++SL++L L+AN       I+  +  SL++L +  N    +L    +  L +L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 85  KVLDLSQNGYFGE--LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
           + LDLS +           ++NL  L+ L+LS+N   G    +      L+LLD+     
Sbjct: 352 QKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL 411
Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
             K PHS                       P  NL  L  +N++ C         L  L 
Sbjct: 412 HVKAPHS-----------------------PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 203 QLTALDLAQNSYR-GMIELDVLLTSWKNLEFLGL-SLNRLSVLTKATSDTTSQKLKYIGL 260
            L  L+L  NS++ G I    LL    +LE L L S N LS+  +A          + GL
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA----------FHGL 498
Query: 261 RSCNLTKFP------NFLQNQHHLR--FMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
           R+ N           + +    HL+  +++++ N I+  +P  LL P +   +  N SHN
Sbjct: 499 RNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR-IIPPHLL-PALSQQSIINLSHN 556
Query: 313 LL 314
            L
Sbjct: 557 PL 558

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29  SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
           ++ +L +L +LDL+ N +S+  P+S   L+ L EL L  N+     P  +  L +L  L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 89  LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
           L++N      P  I NL +L  L L FNN S   P S+       L  L+   F+  KV 
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 339
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
              S+ N T + +L  G N  S   L P+ NL  +
Sbjct: 340 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 372

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29  SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
           ++ +L +L +LDL+ N +S+  P+S   L+ L EL L  N+     P  +  L +L  L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 89  LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
           L++N      P  I NL +L  L L FNN S   P S+       L  L+   F+  KV 
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 344
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
              S+ N T + +L  G N  S   L P+ NL  +
Sbjct: 345 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 377

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 32  NLHSLEELDLSANFLSSEWPISIGNL--SSLKELDLSQNRFFGELPISMGNLG--SLKVL 87
           +L SLE LDLS N LS +   S  +   +SLK LDLS N   G + +S   LG   L+ L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHL 401
Query: 88  D-----LSQNGYFGELPTSIRNLF---------------------SLEKLDLSFNNFSGE 121
           D     L Q   F     S+RNL                      SLE L ++ N+F   
Sbjct: 402 DFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 122 F-PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           F P       +L  LDL  C      P +  + + LQ L++  NNF      P   L SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 181 EAINVAKCNFSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
           + ++ +  +        L++  S L  L+L QN +    E    L   K+   L + + R
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 240 LSVLTKA 246
           +   T +
Sbjct: 581 MECATPS 587

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
           F ++P ++   FS + LDLSFN       +S  +F  L++LDL  C        +  + +
Sbjct: 19  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
            L  L L  N      LG    L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
           +   +L    ++  NLE L LS N++
Sbjct: 137 QSF-KLPEYFSNLTNLEHLDLSSNKI 161

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
           F ++P ++   FS + LDLSFN       +S  +F  L++LDL  C        +  + +
Sbjct: 20  FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
            L  L L  N      LG    L SL+ +   + N +      + +L  L  L++A N  
Sbjct: 78  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
           +   +L    ++  NLE L LS N++
Sbjct: 138 QSF-KLPEYFSNLTNLEHLDLSSNKI 162

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 32  NLHSLEELDLSANFLSSEWPISIGNLS--SLKELDLSQNRFFGELPISMGNLG--SLKVL 87
           +L SLE LDLS N LS +   S  +    SLK LDLS N   G + +S   LG   L+ L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQLEHL 425
Query: 88  D-----LSQNGYFGELPTSIRNLF---------------------SLEKLDLSFNNFSGE 121
           D     L Q   F     S+RNL                      SLE L ++ N+F   
Sbjct: 426 DFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 122 F-PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           F P       +L  LDL  C      P +  + + LQ L++  NNF      P   L SL
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 181 EAINVAKCNFSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
           + ++ +  +        L++  S L  L+L QN +    E    L   K+   L + + R
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604
Query: 240 LSVLTKA 246
           +   T +
Sbjct: 605 MECATPS 611

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 24  GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLG 82
            ELP  +  L +L++L LSAN   +   IS  N  SL  L +  N    EL    + NL 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 83  SLKVLDLSQNGYFGELPTS------IRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLD 136
           +L+ LDLS +    ++ TS      +RNL  L+ L+LS+N        +      L+LLD
Sbjct: 351 NLRELDLSHD----DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 137 LRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITS 196
           L               FT+L+           D   P  NL  L+ +N++          
Sbjct: 407 LA--------------FTRLKV---------KDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 197 SLRNLSQLTALDLAQNSY-RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL 255
               L  L  L+L  N + +G I+    L +   LE L LS   LS + +  + T+ + +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMM 502
Query: 256 KYIGLRSCNLTKFPNFLQNQHHLR--FMDLSDNRIQGKVPKWL 296
            ++ L    LT   + ++   HL+  +++L+ N I   +P  L
Sbjct: 503 NHVDLSHNRLTS--SSIEALSHLKGIYLNLASNHISIILPSLL 543

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 6e-82
 Identities = 125/410 (30%), Positives = 180/410 (43%), Gaps = 38/410 (9%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP--ISIGNLSS 59
           + SSL +L+ L  L LS + + G +        SL  LDLS N LS       S+G+ S 
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 60  LKELDLSQNRFFGELPISMG-NLGSLKVLDLSQNGYFGELPTSIR---NLFSLEKLDLSF 115
           LK L++S N       +S G  L SL+VLDLS N   G              L+ L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG 175
           N  SG+         +L+ LD+ S  F   +P  +G+ + LQ+L +  N  SGD    I 
Sbjct: 188 NKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 176 NLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
               L+ +N++   F G I      L  L  L LA+N + G I    L  +   L  L L
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDL 301

Query: 236 SLNRLS-----VLTKATSDTTSQKLKYIGLRSCNLT-KFP-NFLQNQHHLRFMDLSDNRI 288
           S N             +       L+ + L S N + + P + L     L+ +DLS N  
Sbjct: 302 SGNHFYGAVPPFFGSCSL------LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 289 QGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNS 347
            G++P+ L + +  +L   + S N  +G       +  N       P  T+  L   NN 
Sbjct: 356 SGELPESLTNLSA-SLLTLDLSSNNFSG------PILPNLCQN---PKNTLQELYLQNNG 405

Query: 348 LTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            TG+IP  + N + L SL LS N LSG +P  LG+ S +L  L L  N L
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  260 bits (666), Expect = 7e-79
 Identities = 124/408 (30%), Positives = 179/408 (43%), Gaps = 37/408 (9%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELP--VSVGNLHSLEELDLSANFLSSEWPISIG-NLSSL 60
           S     + L  LDLS N L G +    S+G+   L+ L++S+N L     +S G  L+SL
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 61  KELDLSQNRFFGELPISM---GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           + LDLS N   G   +        G LK L +S N   G++   +    +LE LD+S NN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
           FS   P   G+ S+L+ LD+      G    +I   T+L+ L++ SN F G +  P   L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPL 268

Query: 178 RSLEAINVAKCNFSGQITSSLR-NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
           +SL+ +++A+  F+G+I   L      LT LDL+ N + G +       S   LE L LS
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF--FGSCSLLESLALS 326

Query: 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFLQN-QHHLRFMDLSDNRIQGKVPK 294
            N  S      +    + LK + L     + + P  L N    L  +DLS N   G +  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 295 WLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPP-PGTITYLA----SNNSLT 349
            L       L      +N  TG                +PP     + L     S N L+
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTG---------------KIPPTLSNCSELVSLHLSFNYLS 431

Query: 350 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           G IPS + +L+ L  L L  N L G +PQ L      L  L L  N+L
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  255 bits (655), Expect = 2e-77
 Identities = 121/403 (30%), Positives = 191/403 (47%), Gaps = 50/403 (12%)

Query: 2   IPSSL---GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLS 58
                       +L HL +S N++ G++ V      +LE LD+S+N  S+  P  +G+ S
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCS 223

Query: 59  SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
           +L+ LD+S N+  G+   ++     LK+L++S N + G +P     L SL+ L L+ N F
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281

Query: 119 SGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL-LGPIGN 176
           +GE P + +G   +L  LDL    F+G VP   G+ + L+ L L SNNFSG+L +  +  
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 177 LRSLEAINVAKCNFSGQITSSLRNLS-QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
           +R L+ ++++   FSG++  SL NLS  L  LDL+ N++ G I  ++       L+ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW 295
             N  +                 G       K P  L N   L  + LS N + G +P  
Sbjct: 402 QNNGFT-----------------G-------KIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 296 LLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPS 354
           L   ++  L       N+L G       +P     +      T+  L    N LTGEIPS
Sbjct: 438 LG--SLSKLRDLKLWLNMLEG------EIPQELMYVK-----TLETLILDFNDLTGEIPS 484

Query: 355 WICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            + N   L  + LS+N L+G +P+ +G     L +L L  N+ 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  243 bits (623), Expect = 9e-73
 Identities = 115/435 (26%), Positives = 184/435 (42%), Gaps = 40/435 (9%)

Query: 1   RIPSSLGNLS-KLLHLDLSLNELQGELPVSVGN--LHSLEELDLSANFLSSEWPISIGNL 57
            +P SL NLS  LL LDLS N   G +  ++     ++L+EL L  N  + + P ++ N 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           S L  L LS N   G +P S+G+L  L+ L L  N   GE+P  +  + +LE L L FN+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
            +GE P    N ++L  + L +    G++P  IG    L  L L +N+FSG++   +G+ 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL 237
           RSL  +++    F+G I +++   S      +A N   G   +   + +    +    + 
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVY--IKNDGMKKECHGAG 591

Query: 238 NRLSVLTKATSDTTS-QKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKW 295
           N L      +             + S            N   + F+D+S N + G +PK 
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 296 LLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP-GTITYLA----SNNSLTG 350
           +   +M  L   N  HN ++G                +P   G +  L     S+N L G
Sbjct: 652 IG--SMPYLFILNLGHNDISG---------------SIPDEVGDLRGLNILDLSSNKLDG 694

Query: 351 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN----LPLSKGCESG 406
            IP  +  L +L  + LS+NNLSG +P+      +         N      PL + C+  
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE--MGQFETFPPAKFLNNPGLCGYPLPR-CDPS 751

Query: 407 EAPTNEDHTEGSEES 421
            A     H       
Sbjct: 752 NADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  243 bits (622), Expect = 1e-72
 Identities = 108/404 (26%), Positives = 176/404 (43%), Gaps = 35/404 (8%)

Query: 8   NLSKLLHLDLS---LNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELD 64
              K+  +DLS   LN     +  S+ +L  LE L LS + ++          +SL  LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 65  LSQNRFFGELP--ISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGE 121
           LS+N   G +    S+G+   LK L++S N        S    L SLE LDLS N+ SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 122 FPWS---TGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGP-IGNL 177
                  +     LK L +      G V   +     L++L + SNNFS  +  P +G+ 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI--PFLGDC 222

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL 237
            +L+ ++++    SG  + ++   ++L  L+++ N + G I    L    K+L++L L+ 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAE 278

Query: 238 NRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWL 296
           N+ +             L  + L   +     P F  +   L  + LS N   G++P   
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 297 LDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSW 355
           L   M+ L   + S N  +G       LP +   L      ++  L  S+N+ +G I   
Sbjct: 339 LL-KMRGLKVLDLSFNEFSG------ELPESLTNL----SASLLTLDLSSNNFSGPILPN 387

Query: 356 ICN--LNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           +C    N L+ L L +N  +G +P  L N S+ L+ L L  N L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYL 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (277), Expect = 6e-26
 Identities = 57/282 (20%), Positives = 96/282 (34%), Gaps = 55/282 (19%)

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
                 +S+ L        +  V  S+ + T L+ L L +++ +G +             
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV------------- 93

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
                       S  +  + LT+LDL++NS  G +     L S   L+FL +S N L   
Sbjct: 94  ------------SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

Query: 244 TKATSDTTSQKLKYIGLRSCNLT----KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP 299
            K +       L+ + L + +++               L+ + +S N+I G V       
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---- 197

Query: 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA----SNNSLTGEIPSW 355
              NL   + S N  +                 +P  G  + L     S N L+G+    
Sbjct: 198 RCVNLEFLDVSSNNFST---------------GIPFLGDCSALQHLDISGNKLSGDFSRA 242

Query: 356 ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           I     L+ L +S N   G +P         L  L L  N  
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPL--PLKS-LQYLSLAENKF 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (473), Expect = 3e-55
 Identities = 72/320 (22%), Positives = 127/320 (39%), Gaps = 41/320 (12%)

Query: 2   IPSSLGNLSKL----LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPI--SIG 55
           I   LGN + L       D       G L  +    + +  LDLS   L   +PI  S+ 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLSSLKELDLS-QNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114
           NL  L  L +   N   G +P ++  L  L  L ++     G +P  +  + +L  LD S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL-QYLHLGSNNFSGDLLGP 173
           +N  SG  P S  +  +L  +        G +P S G+F++L   + +  N  +G +   
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 174 IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI-ELDVLLTSWKNLEF 232
             NL +L  +++++    G  +    +      + LA+NS    + ++ +     KNL  
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNG 248

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKV 292
           L L  NR+                  G         P  L     L  +++S N + G++
Sbjct: 249 LDLRNNRIY-----------------G-------TLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 293 PKWLLDPNMQNLNGFNFSHN 312
           P+     N+Q  +   +++N
Sbjct: 285 PQ---GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (453), Expect = 3e-52
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 4/213 (1%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IP ++  L++L +L ++   + G +P  +  + +L  LD S N LS   P SI +L +L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 62  ELDLSQNRFFGELPISMGNLGSL-KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
            +    NR  G +P S G+   L   + +S+N   G++P +  NL +L  +DLS N   G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
           +     G+  + + + L        +   +G    L  L L +N   G L   +  L+ L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213
            ++NV+  N  G+I     NL +      A N 
Sbjct: 271 HSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (397), Expect = 3e-44
 Identities = 79/359 (22%), Positives = 116/359 (32%), Gaps = 80/359 (22%)

Query: 49  EWPISIGNLSSL----KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGE--LPTSI 102
           +    +GN ++L       D     + G L  +      +  LDLS         +P+S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 103 RNLFSLEKLDLS-FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161
            NL  L  L +   NN  G  P +    + L  L +      G +P  +     L  L  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD 221
             N  SG L   I +L +L  I       SG I  S  + S+L                 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----------------- 175

Query: 222 VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFM 281
                      + +S NRL+                 G       K P    N  +L F+
Sbjct: 176 --------FTSMTISRNRLT-----------------G-------KIPPTFAN-LNLAFV 202

Query: 282 DLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITY 341
           DLS N ++G         + +N    + + N L                  +   G    
Sbjct: 203 DLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAF---------------DLGKVGLSKN 245

Query: 342 LA----SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396
           L      NN + G +P  +  L  L SL +S NNL G +PQ  GN      V     N 
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR-FDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (294), Expect = 1e-29
 Identities = 58/310 (18%), Positives = 98/310 (31%), Gaps = 75/310 (24%)

Query: 97  ELPTSIRNLFSL----EKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG--KVPHSI 150
           ++   + N  +L       D     + G    +      +  LDL          +P S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 151 GNFTQLQYLHL-GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDL 209
            N   L +L++ G NN  G +   I  L  L  + +   N SG I   L  +  L  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
           + N+  G +                                                  P
Sbjct: 133 SYNALSGTL--------------------------------------------------P 142

Query: 270 NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNL-NGFNFSHNLLTGFDQHPVVLPGNK 328
             + +  +L  +    NRI G +P      +   L      S N LTG       +P   
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNRLTG------KIPPTF 194

Query: 329 GPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDEL 387
             L       + ++  S N L G+      +    + + L+ N+L+  L + +G     L
Sbjct: 195 ANL------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NL 246

Query: 388 LVLDLQGNNL 397
             LDL+ N +
Sbjct: 247 NGLDLRNNRI 256

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  188 bits (479), Expect = 6e-53
 Identities = 81/413 (19%), Positives = 134/413 (32%), Gaps = 28/413 (6%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             ++    S+L  LD+  N +    P     L  L+ L+L  N LS     +    ++L 
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
           EL L  N              +L  LDLS NG       +   L +L++L LS N     
Sbjct: 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 122 FPWSTGNF--SSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG---N 176
                  F  SSLK L+L S       P       +L  L L +      L   +     
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 177 LRSLEAINVAKCNFSGQITSSLRNL--SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLG 234
             S+  ++++    S    ++   L  + LT LDL+ N+   +   +        LE+  
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYFF 278

Query: 235 LSLNRLSV--------LTKATSDTTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSD 285
           L  N +          L         +      +   +L K  +F  Q    L  +++ D
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 286 NRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-S 344
           N I G          + NL   + S++  +                       +  L  +
Sbjct: 339 NDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHS-------PLHILNLT 389

Query: 345 NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            N ++         L  LE L L  N +   L        + +  + L  N  
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (455), Expect = 1e-49
 Identities = 76/425 (17%), Positives = 132/425 (31%), Gaps = 70/425 (16%)

Query: 2   IPSSLGNL--SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSS 59
             ++   L  + L  LDLS N L      S   L  LE   L  N +   +  S+  L +
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 60  LKELDLSQNRFFGEL---------PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK 110
           ++ L+L ++     +           S   L  L+ L++  N   G        L +L+ 
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

Query: 111 LDLSFNNFSGEFP----WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166
           L LS +  S        + +   S L +L+L           +      L+ L LG N  
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 167 SGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLT 225
             +L       L ++  I ++   +     +S   +  L  L L + + + +        
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSD 285
             +NL  L LS N ++ +                          + L+    L  +DL  
Sbjct: 478 PLRNLTILDLSNNNIANIN------------------------DDMLEGLEKLEILDLQH 513

Query: 286 NRIQ------GKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTI 339
           N +                  + +L+  N   N                      P    
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-----------------PVEVF 556

Query: 340 TYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL 392
             L          N+L     S   N   L+SL L  N ++ +  +  G     L  LD+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 393 QGNNL 397
           + N  
Sbjct: 617 RFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (452), Expect = 3e-49
 Identities = 79/413 (19%), Positives = 128/413 (30%), Gaps = 53/413 (12%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           ++P  L   + +  L+L+ N+L+     +      L  LD+  N +S   P     L  L
Sbjct: 18  QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           K L+L  N        +     +L  L L  N              +L  LDLS N  S 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF--TQLQYLHLGSNNFSGDLLGPIGNLR 178
               +     +L+ L L +          +  F  + L+ L L SN       G    + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 179 SLEAINVAKCNFSGQITSSLR---NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
            L  + +        +T  L      + +  L L+ +          L   W NL  L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW 295
           S N L+V+                          +       L +  L  N IQ      
Sbjct: 256 SYNNLNVVG------------------------NDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 296 LLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-------SNNSL 348
           L    + N+   N   +           +      LP     +  +L         +N +
Sbjct: 292 LH--GLFNVRYLNLKRSFTKQ------SISLAS--LPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 349 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSD----ELLVLDLQGNNL 397
            G   +    L  L+ L LS++  S L       F       L +L+L  N +
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (398), Expect = 9e-42
 Identities = 71/373 (19%), Positives = 123/373 (32%), Gaps = 16/373 (4%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
           S E  D S   L+    +     +++  L+L+ N+       +      L  LD+  N  
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
               P   + L  L+ L+L  N  S     +    ++L  L L S        +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLR--NLSQLTALDLAQN 212
            L  L L  N  S   LG    L +L+ + ++        +  L     S L  L+L+ N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLS--VLTKATSDTTSQKLKYIGLRSCNLTKFPN 270
             +          +   L  L L+  +L   +  K   +  +  ++ + L +  L+   N
Sbjct: 182 QIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 271 ---FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN 327
                    +L  +DLS N +            +  L  F   +N +     H +    N
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 328 KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDEL 387
              L +    T   + S  SL          L  LE L +  N++ G+         + L
Sbjct: 298 VRYLNLKRSFTKQSI-SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-L 355

Query: 388 LVLDLQGNNLPLS 400
             L L  +   L 
Sbjct: 356 KYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (336), Expect = 2e-33
 Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 12/245 (4%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKELDLS 66
             S L  L+L+ N++      +   L  LE LDL  N +  E        L ++ E+ LS
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW 124
            N++      S   + SL+ L L +         P+  + L +L  LDLS NN +     
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 125 STGNFSSLKLLDLRSC--------GFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGN 176
                  L++LDL+             G   + +   + L  L+L SN F    +    +
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
           L  L+ I++   N +    S   N   L +L+L +N    + +  V   +++NL  L + 
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMR 617

Query: 237 LNRLS 241
            N   
Sbjct: 618 FNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW--------PI 52
             PS    L  L  LDLS N +       +  L  LE LDL  N L+  W          
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530

Query: 53  SIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112
            +  LS L  L+L  N F         +L  LK++DL  N       +   N  SL+ L+
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 113 LSFNNFSGEFP-WSTGNFSSLKLLDLR 138
           L  N  +          F +L  LD+R
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 5e-17
 Identities = 35/128 (27%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQ--------GELPVSVGNLHSLEELDLSANFLSSEWPIS 53
               L  L KL  LDL  N L         G     +  L  L  L+L +N         
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 54  IGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLF-SLEKLD 112
             +L  LK +DL  N           N  SLK L+L +N             F +L +LD
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 113 LSFNNFSG 120
           + FN F  
Sbjct: 616 MRFNPFDC 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  183 bits (467), Expect = 2e-51
 Identities = 54/405 (13%), Positives = 122/405 (30%), Gaps = 54/405 (13%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSS--------EWPIS 53
                 NL  L  +++       +LP  +  L  ++ ++++ N   S        +    
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 54  IGNLSSLKELDLSQNRFF-GELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112
                 ++ + +  N      +  S+  +  L +L+   N        +  +   L  L+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLN 359

Query: 113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPH--SIGNFTQLQYLHLGSNNFSG-- 168
           L++N  +       G    ++ L          +P+     + + +  +    N      
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 169 -----DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS-----YRGMI 218
                 L        ++ +IN++    S          S L++++L  N         + 
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHL 278
           + +    +   L  + L  N+L+ L+     TT   L  I L   + +KFP    N   L
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 279 RFM------DLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLP 332
           +        D   NR   + P+ +      +L       N +                  
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSNDIRKV--------------- 581

Query: 333 VPPPGTITYLA----SNNSLTGEIPSWICNLNILESLVLSHNNLS 373
                    ++     +N       S++C        +L ++   
Sbjct: 582 --NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (462), Expect = 8e-51
 Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 51/419 (12%)

Query: 5   SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLS----SEWPISIGNLSSL 60
           SL +  ++  L L      G +P ++G L  LE L L ++          P  I    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 61  KELDLSQNRFFGELP--ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
           ++    +  +           +   L    ++ +     +  S R      ++    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
           +     +    + L+   + +  F  +           +Y                 NL+
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS------WKNLEF 232
            L  + V  C    ++ + L+ L ++  +++A N      +L     +       + ++ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKV 292
           + +  N L      TS    +KL  +      L        ++  L  ++L+ N+I   +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-I 368

Query: 293 PKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-------SN 345
           P        + +   +F+HN L                   P       ++       S 
Sbjct: 369 PANFCG-FTEQVENLSFAHNKLKYI----------------PNIFDAKSVSVMSAIDFSY 411

Query: 346 NSLTG-------EIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           N +          +         + S+ LS+N +S    +     S  L  ++L GN L
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (462), Expect = 9e-51
 Identities = 65/421 (15%), Positives = 138/421 (32%), Gaps = 42/421 (9%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQG----ELPVSVGNLHSLEELDLSANFLSSEWPISIG-- 55
           +P ++G L++L  L L  +  +       P  +    S E+           +       
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 56  NLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115
           + S L +  ++ +     +  S         +    N     +  ++  L  L +  +  
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGN 215

Query: 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG 175
           + F  E         + +  +      +        N   L  + + +      L   + 
Sbjct: 216 SPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 176 NLRSLEAINVAKCNF--------SGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227
            L  ++ INVA              Q  +      ++  + +  N+ +    ++  L   
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKM 329

Query: 228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDN 286
           K L  L    N+L     A        L  + L    +T+ P NF      +  +  + N
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIK--LASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 287 RIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA--- 343
           +++  +P      ++  ++  +FS+N +   D        N  PL  P P     ++   
Sbjct: 388 KLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVD------GKNFDPLD-PTPFKGINVSSIN 439

Query: 344 -SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDE------LLVLDLQGNN 396
            SNN ++          + L S+ L  N L+ +    L + ++       L  +DL+ N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 397 L 397
           L
Sbjct: 500 L 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (440), Expect = 1e-47
 Identities = 62/433 (14%), Positives = 141/433 (32%), Gaps = 68/433 (15%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGE-------------------LPVSVGNLHSLEELDLS 42
           +  ++  L+KL    +  +    E                     +   NL  L ++++ 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 43  ANFLSSEWPISIGNLSSLKELDLSQNRF--------FGELPISMGNLGSLKVLDLSQNG- 93
                ++ P  +  L  ++ ++++ NR           +          ++++ +  N  
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 94  YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF 153
               + TS++ +  L  L+  +N   G+ P + G+   L  L+L          +  G  
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 154 TQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSG-------QITSSLRNLSQL 204
            Q++ L    N      ++     ++  + AI+ +              +  +      +
Sbjct: 377 EQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
           ++++L+ N      +   L ++   L  + L  N L+                  +   +
Sbjct: 436 SSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLT-----------------EIPKNS 476

Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL 324
           L       +N + L  +DL  N++   +        +  L G + S+N  + F       
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQ---- 531

Query: 325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
           P N   L             N     E P  I     L  L +  N++  +  +   N  
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNR-TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN-- 588

Query: 385 DELLVLDLQGNNL 397
             + VLD++ N  
Sbjct: 589 --ISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (339), Expect = 5e-34
 Identities = 57/387 (14%), Positives = 114/387 (29%), Gaps = 73/387 (18%)

Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
              +    +   +   ++  +S+ +   +  L L      G +P ++G L  L+VL L  
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114

Query: 92  N----GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG--NFSSLKLLDLRSCGFWGK 145
           +          P  I    S E+      ++   F       +FS L    + S      
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
           +  S     +   +   SNN +  +   +  L  L    +    F  +            
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN- 264
                                 +  +   L  + L              L  + + +C  
Sbjct: 234 YA--------------------QQYKTEDLKWDNLK------------DLTDVEVYNCPN 261

Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD-------PNMQNLNGFNFSHNLLTGF 317
           LTK P FL+    ++ ++++ NR      +   D       P  + +      +N L   
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLKT- 319

Query: 318 DQHPVVLPGNKGPLPVPPPGTITYLA-------SNNSLTGEIPSWICNLNILESLVLSHN 370
                           P   ++  +          N L G++P+   +   L SL L++N
Sbjct: 320 ---------------FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN 363

Query: 371 NLSGLLPQCLGNFSDELLVLDLQGNNL 397
            ++ +     G     +  L    N L
Sbjct: 364 QITEIPANFCGFTEQ-VENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 24/222 (10%), Positives = 48/222 (21%), Gaps = 41/222 (18%)

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI--ELDVLLTSWKNLEFLGLSLNRLS 241
           N     +  Q   SL +  ++T L L      G +   +  L      LE L L  +   
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL----TELEVLALGSHGEK 118

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
           V                          P  +                Q     +    + 
Sbjct: 119 VN--------------------ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLN 360
            +L     + +           +  +            T +   +N++T  +   +  L 
Sbjct: 159 SDLIKDCINSDPQQKS------IKKSSRITL-----KDTQIGQLSNNITF-VSKAVMRLT 206

Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKG 402
            L    + ++                      Q     L   
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENE--NSEYAQQYKTEDLKWD 246

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (447), Expect = 5e-48
 Identities = 57/442 (12%), Positives = 137/442 (30%), Gaps = 62/442 (14%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
               L N  ++  L L+    +G +P ++G L  L+ L    +  +    +      +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 62  ELDLSQNRFFGEL-PISMGNLGSLKVLDLSQNGY-------------------------- 94
             +  ++R       + +     L + DL Q+                            
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 95  --FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGN 152
                +  +I+ L  L+ +  + + F+ +           +  +      +     S  N
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSN 489

Query: 153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG---------QITSSLRNLSQ 203
              L  + L +      L   + +L  L+++N+A               ++        +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 204 LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC 263
           +    +  N+          L     L  L    N++  L    +  T+ KL  + L   
Sbjct: 550 IQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRHL---EAFGTNVKLTDLKLDYN 605

Query: 264 NLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV 322
            + + P +F      +  +  S N+++  +P      ++  +   +FS+N +        
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSE----- 659

Query: 323 VLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 381
                   +        + +  S N +           + + +++LS+N ++ +    L 
Sbjct: 660 -GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 382 NFSDE------LLVLDLQGNNL 397
                      L  +DL+ N L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (423), Expect = 8e-45
 Identities = 59/431 (13%), Positives = 127/431 (29%), Gaps = 61/431 (14%)

Query: 4   SSLGNLSKLLHLDLSLNELQG------ELPVSVGNLHSLEELDLSANFLSSEWPISIGNL 57
             +  + K   + L   ++         +  ++  L  L+ +  + +  +          
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIA 466

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
              ++ +    + +    +S  NL  L  ++L       +LP  + +L  L+ L+++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 118 FSG---------EFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFS 167
                                  +++  +            S+    +L  L    N   
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227
              L   G    L  + +                 Q+  L  + N  +  I       S 
Sbjct: 587 H--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSV 643

Query: 228 KNLEFLGLSLNRLSVLTKATSDTTSQ----KLKYIGLRSCNLTKFP-NFLQNQHHLRFMD 282
             +  +  S N++    +  S +           + L    + KFP         +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 283 LSDNRIQGKVPKWLLDP------NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP 336
           LS+N +   +P+  L P      N   L   +   N LT                     
Sbjct: 704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA------------- 749

Query: 337 GTITYLA----SNNSLTGEIPSWICNLNILESLVLSH------NNLSGLLPQCLGNFSDE 386
            T+ YL+    S N  +   P+   N + L++  + H      N +    P  +      
Sbjct: 750 TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS- 807

Query: 387 LLVLDLQGNNL 397
           L+ L +  N++
Sbjct: 808 LIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 2e-44
 Identities = 61/438 (13%), Positives = 123/438 (28%), Gaps = 75/438 (17%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSS---------EWPI 52
              S  NL  L  ++L       +LP  + +L  L+ L+++ N   S             
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 53  SIGNLSSLKELDLSQNRFFGELPIS--MGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK 110
                  ++   +  N    E P S  +  +  L +LD   N     L  +      L  
Sbjct: 543 DEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTD 599

Query: 111 LDLSFNNFSGEFPWSTGNF-SSLKLLDLRSCGFWGKVPH--SIGNFTQLQYLHLGSNNFS 167
           L L +N    E P     F   ++ L          +P+  +  +   +  +    N   
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 168 GDLLG-----PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS-----YRGM 217
            +              +   + ++        T      S ++ + L+ N         +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHH 277
              D    +   L  + L  N+L+ L+     TT   L  + +     + FP    N   
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 278 LRFMDL------SDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPL 331
           L+   +        NRI  + P  +      +L       N +                 
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGIT--TCPSLIQLQIGSNDIR---------------- 819

Query: 332 PVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLD 391
                              ++   +     L  L ++ N    +    +  +  E  +  
Sbjct: 820 -------------------KVDEKL--TPQLYILDIADNPNISIDVTSVCPYI-EAGMYV 857

Query: 392 LQGNNLPLSKGCESGEAP 409
           L  +     +GC++    
Sbjct: 858 LLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 4e-21
 Identities = 48/386 (12%), Positives = 110/386 (28%), Gaps = 74/386 (19%)

Query: 57  LSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116
            +  + LD    R++     +  +  +    +   + +  +    + N   +  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL------ 170
              G  P + G  + LK+L   +                        +            
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 171 --------------------LGPIGNLRSLEAINVAKCNFSGQITS---SLRNLSQLTAL 207
                               + PI     +   +    N + +IT    +++ L++L  +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 208 DLAQNSYRGMI-ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN-L 265
             A + +      +D    +    +         S L           L  + L +C  +
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK---------DLTDVELYNCPNM 504

Query: 266 TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP-------NMQNLNGFNFSHNLLTGFD 318
           T+ P+FL +   L+ ++++ NR                       +  F   +N L    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562

Query: 319 QHPVVLPGNKGPLPVPPPGTITYLA-------SNNSLTGEIPSWICNLNILESLVLSHNN 371
                          P   ++  +         +N +   + +       L  L L +N 
Sbjct: 563 --------------FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQ 606

Query: 372 LSGLLPQCLGNFSDELLVLDLQGNNL 397
           +   +P+    F+D++  L    N L
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 7/81 (8%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 344 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC 403
           +     G +P  I  L  L+ L    ++ +    +  G+      + + + + + +    
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVS-GRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 404 ESGEAPTNEDHTEGSEESLFS 424
              +     + ++  ++++  
Sbjct: 390 MFLDYDQRLNLSDLLQDAINR 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (439), Expect = 8e-48
 Identities = 79/419 (18%), Positives = 139/419 (33%), Gaps = 30/419 (7%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IP +L       +LDLS N L+     S  +   L+ LDLS   + +    +  +LS L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF-SG 120
            L L+ N        +   L SL+ L   +          I +L +L++L+++ N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQY----LHLGSNNFSGDLLGPIGN 176
           + P    N ++L+ LDL S          +    Q+      L L  N  +    G    
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 177 LRSLEAINVAKCNFSGQITS-SLRNLSQLTALDLAQNSYRGMIELDVL----LTSWKNLE 231
           +R L  + +     S  +    ++ L+ L    L    +R    L+      L    NL 
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 232 FLGLSLNRLSVLTKATSDTTS--QKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ 289
                L  L        D  +    +    L S  + +  +F       + ++L + +  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFG 317

Query: 290 GKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP----VVLPGNKGPLPVPPPGTITYLA-- 343
                 L   +++ L   +            P    + L  N          +       
Sbjct: 318 QFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 344 -----SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
                S N +   + S    L  LE L   H+NL  +    +      L+ LD+   + 
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (408), Expect = 2e-43
 Identities = 79/420 (18%), Positives = 140/420 (33%), Gaps = 53/420 (12%)

Query: 2   IPSSLGNLSKL----LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE-WPISIGN 56
             + L  L ++    L LDLSLN +    P +   +  L +L L  NF S       I  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223

Query: 57  LSSLKELDLSQNRFFGE---LPISMGNLGSLKVLDLSQN------GYFGELPTSIRNLFS 107
           L+ L+   L    F  E          L  L  L + +        Y  ++      L +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
           +    L          +S       + L+L +C F       + +  +L +      N  
Sbjct: 284 VSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-- 339

Query: 168 GDLLGPIGNLRSLEAINVA--KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLT 225
                   +L SLE ++++    +F G  + S    + L  LDL+ N    +I +     
Sbjct: 340 ---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG---VITMSSNFL 393

Query: 226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLS 284
             + LE L    + L  +++ +   + + L Y+ +   +    F         L  + ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 285 DNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA- 343
            N  Q      +    ++NL   + S   L                     P     L+ 
Sbjct: 454 GNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQL-----------------SPTAFNSLSS 495

Query: 344 ------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
                 S+N+           LN L+ L  S N++     Q L +F   L  L+L  N+ 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (341), Expect = 2e-34
 Identities = 68/320 (21%), Positives = 103/320 (32%), Gaps = 39/320 (12%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            I      L+ +    L    ++     S       + L+L               L SL
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ---FPTLKLKSL 327

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNG--YFGELPTSIRNLFSLEKLDLSFNNF 118
           K L  + N+       S  +L SL+ LDLS+NG  + G    S     SL+ LDLSFN  
Sbjct: 328 KRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNL 177
                 +      L+ LD +          S+  +   L YL +   +      G    L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 178 RSLEAINVAKCNFSGQI-TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
            SLE + +A  +F           L  LT LDL+Q     +        S  +L+ L +S
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMS 502

Query: 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWL 296
            N    L                             +  + L+ +D S N I     +  
Sbjct: 503 HNNFFSL------------------------DTFPYKCLNSLQVLDYSLNHIMTSKKQE- 537

Query: 297 LDPNMQNLNGFNFSHNLLTG 316
           L     +L   N + N    
Sbjct: 538 LQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (317), Expect = 3e-31
 Identities = 56/317 (17%), Positives = 102/317 (32%), Gaps = 9/317 (2%)

Query: 85  KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144
                 +  ++ ++P ++   FS + LDLSFN       +S  +F  L++LDL  C    
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 145 KVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQL 204
               +  + + L  L L  N      LG    L SL+ +   + N +      + +L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQ---KLKYIGLR 261
             L++A N  +   +L    ++  NLE L LS N++  +         Q       + L 
Sbjct: 127 KELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 262 SCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321
              +         +  L  + L +N     V K  +   +  L                 
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLE 244

Query: 322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 381
                    L          LA  +    +I      L  + S  L    +  +      
Sbjct: 245 KFDKSALEGLC-NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 382 NFSDELLVLDLQGNNLP 398
                L +++ +    P
Sbjct: 304 FGWQHLELVNCKFGQFP 320

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 4e-24
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 27/210 (12%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW-PISIGNLSSLK 61
            S   +L  L++LD+S    +         L SLE L ++ N     + P     L +L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            LDLSQ +     P +  +L SL+VL++S N +F       + L SL+ LD S N+    
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD--LLGPIGNLRS 179
                 +F                        + L +L+L  N+F+        +  ++ 
Sbjct: 534 KKQELQHF-----------------------PSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 180 LEAINVAKCNFSGQITSSLRNLSQLTALDL 209
              + V          S  + +  + +L++
Sbjct: 571 QRQLLVEVERMECATPSDKQGMP-VLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +P     L  L  LDLS  +L+   P +  +L SL+ L++S N   S        L+SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 62  ELDLSQNRFFGELPISMGNL-GSLKVLDLSQNGYFGELPTS--IRNLFSLEKLDLSFNNF 118
            LD S N         + +   SL  L+L+QN +         ++ +    +L +     
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 119 SGEFPWSTGNFSSLKLLDL 137
               P    +   + +L L
Sbjct: 582 ECATP---SDKQGMPVLSL 597

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (433), Expect = 7e-47
 Identities = 70/403 (17%), Positives = 128/403 (31%), Gaps = 21/403 (5%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             ++   L  L  LDL+  ++      +  + H L+ L L+AN L      ++    +LK
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L   Q        I + N  +L+ L L  N               L+ LD   N     
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 122 FPWSTGNFSSLKLLDLR-SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGN--LR 178
                 +      L L  +      +     +    Q L+ G       +   + N  ++
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 179 SLEAINVAKCNFSGQITSSLRNLS--QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
           SL        +      +    L    + +++L ++ +  +         +  L+ L L+
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS--NTFHCFSGLQELDLT 286

Query: 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKW 295
              LS L       ++  LK + L +            N   L  + +  N  + ++   
Sbjct: 287 ATHLSELPSGLVGLST--LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 296 LLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPS 354
            L+ N++NL   + SH+ +   D   + L              +  L  S N        
Sbjct: 345 CLE-NLENLRELDLSHDDIETSDCCNLQLRNLS---------HLQSLNLSYNEPLSLKTE 394

Query: 355 WICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
                  LE L L+   L     Q        L VL+L  + L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  165 bits (419), Expect = 5e-45
 Identities = 70/407 (17%), Positives = 127/407 (31%), Gaps = 26/407 (6%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             ++L     L HL      +     + + N  +LE L L +N +SS           LK
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEKLDLSFNNFSG 120
            LD   N         M +L     L L+ NG     +     +    + L+        
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 121 EFPWSTGN--FSSLKLLDLRSCGFWGKVPHSIGNF--TQLQYLHLGSNNFSGDLLGPIGN 176
                  N    SL L            P          ++ ++L  + F          
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
              L+ +++   + S ++ S L  LS L  L L+ N +  + ++    +++ +L  L + 
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIK 333

Query: 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP---NFLQNQHHLRFMDLSDNRIQGKVP 293
            N   +          + L+ + L   ++         L+N  HL+ ++LS N       
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 294 KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEI 352
           +         L   + +   L   D            L       +  L  S++ L    
Sbjct: 394 EAFK--ECPQLELLDLAFTRLKVKDA-----QSPFQNLH-----LLKVLNLSHSLLDISS 441

Query: 353 PSWICNLNILESLVLSHNNLSGLLPQCLGNFSD--ELLVLDLQGNNL 397
                 L  L+ L L  N+      Q   +      L +L L   +L
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (389), Expect = 7e-41
 Identities = 83/406 (20%), Positives = 144/406 (35%), Gaps = 27/406 (6%)

Query: 3   PSSLGNLSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGN--LSS 59
              + +L +  +L L+LN      +     +    + L+             + N  + S
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 60  LKELDLSQNRFFGELPISMGNLG--SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           L              P     L   S++ ++L ++ +F     +      L++LDL+  +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL-GPIGN 176
            S E P      S+LK L L +  F      S  NF  L +L +  N    +L  G + N
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 177 LRSLEAINVAKCN--FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLG 234
           L +L  ++++  +   S      LRNLS L +L+L+ N    +            LE L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKECPQLELLD 406

Query: 235 LSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN-FLQNQHHLRFMDLSDNRIQGKVP 293
           L+  RL V    +       LK + L    L             L+ ++L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 294 -KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGE 351
            K      +  L     S   L+            K          + ++  S+N LT  
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSI--DQHAFTSLKM---------MNHVDLSHNRLTSS 515

Query: 352 IPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
               + +L  +  L L+ N++S +LP  L   S     ++L+ N L
Sbjct: 516 SIEALSHLKGIY-LNLASNHISIILPSLLPILSQ-QRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 5e-40
 Identities = 80/384 (20%), Positives = 146/384 (38%), Gaps = 27/384 (7%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGN--LHSLEELDLSANFLSSEWPISIGNLS- 58
           I     + +    L+    +    +   + N  + SL              P     L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 59  -SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
            S++ ++L ++ FF     +      L+ LDL+   +  ELP+ +  L +L+KL LS N 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK 312

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKV-PHSIGNFTQLQYLHLGSNN--FSGDLLGPI 174
           F      S  NF SL  L ++      ++    + N   L+ L L  ++   S      +
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 175 GNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLG 234
            NL  L+++N++        T + +   QL  LDLA    +   +      +   L+ L 
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLN 431

Query: 235 LSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF----PNFLQNQHHLRFMDLSDNRIQG 290
           LS + L + ++   D     L+++ L+  +  K      N LQ    L  + LS   +  
Sbjct: 432 LSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 291 KVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG 350
                    +++ +N  + SHN LT        L   KG         I    ++N ++ 
Sbjct: 491 IDQHAF--TSLKMMNHVDLSHNRLTSSS--IEALSHLKG---------IYLNLASNHISI 537

Query: 351 EIPSWICNLNILESLVLSHNNLSG 374
            +PS +  L+   ++ L  N L  
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 40/226 (17%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P     S E +  +         ++   L  LT LDL +     + E      S   L+ 
Sbjct: 28  PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED--TFQSQHRLDT 85

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGK 291
           L L+ N L  + +         LK++      ++      L NQ  L  + L  N I   
Sbjct: 86  LVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 292 VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE 351
                     + L   +F +N +                        ++ L         
Sbjct: 145 KLPKGF--PTEKLKVLDFQNNAIHYL-----------------SKEDMSSL--------- 176

Query: 352 IPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
                     L  L L+ N+++G+ P    +       L+  G   
Sbjct: 177 -----QQATNLS-LNLNGNDIAGIEPGAFDSAV--FQSLNFGGTQN 214

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  150 bits (381), Expect = 8e-40
 Identities = 72/427 (16%), Positives = 129/427 (30%), Gaps = 44/427 (10%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQG-ELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
               +G L  L  L+++ N +   +LP    NL +L  +DLS N++ +     +  L   
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 61  K----ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSF 115
                 LD+S N     +         L  L L  N     +  T ++NL  L    L  
Sbjct: 180 PQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 116 NNFSGEFPWSTGNFSSLK--------LLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
             F  E        S ++           L     +            +  + L   +  
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227
              L  +      +++++ +C           +L  L +L L  N       +     + 
Sbjct: 299 Y--LEDVPKHFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNK----GSISFKKVAL 349

Query: 228 KNLEFLGLSLNRLSVLTK-ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDN 286
            +L +L LS N LS     + SD  +  L+++ L                 L+ +D   +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

Query: 287 RIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVV---------LPGNKGPLPVPPPG 337
            ++          +++ L   + S+           +         + GN          
Sbjct: 410 TLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF-KDNTLSN 467

Query: 338 TITYLA-------SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVL 390
                        S   L          L+ L+ L +SHNNL  L           L  L
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTL 526

Query: 391 DLQGNNL 397
           D   N +
Sbjct: 527 DCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (365), Expect = 1e-37
 Identities = 73/430 (16%), Positives = 140/430 (32%), Gaps = 51/430 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           ++P  +   S   ++DLS N L+     S  N   L+ LDLS   + +    +   L  L
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             L L+ N      P S   L SL+ L   +          I  L +L+KL+++ N    
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 121 -EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL----QYLHLGSNNFSGDLLGPIG 175
            + P    N ++L  +DL          + +    +       L +  N           
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 176 NLRSLEAINVAKCNFSGQITS-SLRNLSQLTALDLAQNSYRGMIELDVL----LTSWKNL 230
            +  L  + +     S  I    L+NL+ L    L    ++    L++     +    ++
Sbjct: 203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 231 EFLGLSLNRLSV-----------------------LTKATSDTTSQKLKYIGLRSCNLTK 267
                 L   +                        +          K + + +  C L +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 268 FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN 327
           FP    +   L+ + L+ N+      K      + +L+  + S N L+          G 
Sbjct: 322 FPT--LDLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 328 KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDEL 387
                     ++ +L  + +    + +    L  L+ L   H+ L  +         ++L
Sbjct: 376 N---------SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 388 LVLDLQGNNL 397
           L LD+   N 
Sbjct: 427 LYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (359), Expect = 9e-37
 Identities = 74/414 (17%), Positives = 130/414 (31%), Gaps = 50/414 (12%)

Query: 4   SSLGNLSK-LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-ISIGNLSSLK 61
             L    +  L LD+SLN +   +         L EL L  NF SS      + NL+ L 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 62  ELDLSQNRFFGELPISMGNLGSLK--------VLDLSQNGYFGELPTSIRNLFSLEKLDL 113
              L    F  E  + +     ++           L+    F +       L ++  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGP 173
           +  +    +          + L +  C           +   L+ L L  N  S  +   
Sbjct: 293 AGVSIK--YLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFK 345

Query: 174 IGNLRSLEAINVAKCNFSGQITSSLRNL--SQLTALDLAQNSYRGMIELDVLLTSWKNLE 231
              L SL  +++++   S     S  +L  + L  LDL+ N     I +       + L+
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQ 402

Query: 232 FLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQNQHHLRFMDLSDNRIQG 290
            L    + L  +T+ ++  + +KL Y+ +   N    F         L  + ++ N  + 
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 291 KVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA------- 343
                +   N  NL   + S   L                      G    L        
Sbjct: 463 NTLSNVFA-NTTNLTFLDLSKCQLEQI-----------------SWGVFDTLHRLQLLNM 504

Query: 344 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           S+N+L     S    L  L +L  S N +              L   +L  N++
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS-LAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 3e-28
 Identities = 52/218 (23%), Positives = 73/218 (33%), Gaps = 5/218 (2%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQ--GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSS 59
           I      L  L +LDLS N L   G    S    +SL  LDLS N        +   L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEE 400

Query: 60  LKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
           L+ LD   +        S   +L  L  LD+S      +       L SL  L ++ N+F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 119 SGEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
                 +   N ++L  LDL  C              +LQ L++  NN           L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215
            SL  ++ +                 L   +L  NS  
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 43/302 (14%), Positives = 74/302 (24%), Gaps = 87/302 (28%)

Query: 96  GELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ 155
           G L   I  + ++          S + P      SS K +DL          +S  NF++
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVP--DDIPSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215
           LQ+L L               L  L  + +           S   L+ L  L   +    
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 216 GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQ 275
            +                                                      +   
Sbjct: 118 SLE--------------------------------------------------SFPIGQL 127

Query: 276 HHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPP 335
             L+ ++++ N I           N+ NL   + S+N +                     
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTI-----------------T 169

Query: 336 PGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN 395
              + +L  N  +               SL +S N +  +  Q        L  L L+GN
Sbjct: 170 VNDLQFLRENPQV-------------NLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGN 214

Query: 396 NL 397
             
Sbjct: 215 FN 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  141 bits (357), Expect = 2e-38
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 13/221 (5%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           + P     LS L H+ +    L  ELP ++     LE L L+ N L +  P SI +L+ L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRL 152

Query: 61  KELDLSQNRFFGELPISMGN---------LGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111
           +EL +       ELP  + +         L +L+ L L   G    LP SI NL +L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211

Query: 112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL 171
            +  +  S     +  +   L+ LDLR C      P   G    L+ L L   +    L 
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
             I  L  LE +++  C    ++ S +  L     + +  +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (355), Expect = 5e-38
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 18/255 (7%)

Query: 2   IPSSLGNLS--KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSS 59
               L + +    + L+L    L  + P     L  L+ + + A  L  E P ++   + 
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128

Query: 60  LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI---------RNLFSLEK 110
           L+ L L++N     LP S+ +L  L+ L +       ELP  +         + L +L+ 
Sbjct: 129 LETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170
           L L +       P S  N  +LK L +R+      +  +I +  +L+ L L       + 
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNL 230
               G    L+ + +  C+    +   +  L+QL  LDL       +  L  L+      
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPAN 303

Query: 231 EFLGLSLNRLSVLTK 245
             + +  +  + L +
Sbjct: 304 CIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (316), Expect = 1e-32
 Identities = 61/328 (18%), Positives = 107/328 (32%), Gaps = 64/328 (19%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELP---------------------VSVGNLHSLEEL 39
                L    +  + D +                              +          L
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86

Query: 40  DLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELP 99
           +L +  L   +P     LS L+ + +       ELP +M     L+ L L++N     LP
Sbjct: 87  ELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALP 143

Query: 100 TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS---------SLKLLDLRSCGFWGKVPHSI 150
            SI +L  L +L +       E P    +           +L+ L L   G    +P SI
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLA 210
            N   L+ L + ++  S  L   I +L  LE +++  C             + L  L L 
Sbjct: 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC-NLTKFP 269
             S               NL  L L ++RL             +L+ + LR C NL++ P
Sbjct: 262 DCS---------------NLLTLPLDIHRL------------TQLEKLDLRGCVNLSRLP 294

Query: 270 NFLQNQHHLRFMDLSDNRIQGKVPKWLL 297
           + +        + +  + +Q ++ +   
Sbjct: 295 SLIAQLPANCIILVPPH-LQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 2e-27
 Identities = 48/371 (12%), Positives = 99/371 (26%), Gaps = 66/371 (17%)

Query: 29  SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
              +    E L    +     +   +         D ++            N  + ++  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62

Query: 89  LSQNGYFGELPTSIRNL--FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV 146
            +           + +        L+L       +FP      S L+ + + + G   ++
Sbjct: 63  RTGRA-LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MEL 119

Query: 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTA 206
           P ++  F  L+ L L  N     L   I +L  L  +++  C    ++   L +      
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 207 LDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266
                                 NL+ L L    +  L  + ++  +  LK + +R+  L+
Sbjct: 179 HQ-----------------GLVNLQSLRLEWTGIRSLPASIANLQN--LKSLKIRNSPLS 219

Query: 267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPG 326
                + +   L  +DL         P          L                      
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLI------------------ 259

Query: 327 NKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDE 386
                          L   ++L   +P  I  L  LE L L        LP  +      
Sbjct: 260 ---------------LKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-A 302

Query: 387 LLVLDLQGNNL 397
             ++ +  +  
Sbjct: 303 NCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 2e-26
 Identities = 53/335 (15%), Positives = 101/335 (30%), Gaps = 30/335 (8%)

Query: 5   SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELD 64
              + S   +L    +         +         D +             N ++ +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 65  LSQNRFFGELPISMGNL--GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
            +           + +        L+L       + P     L  L+ + +       E 
Sbjct: 63  RTGRA-LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN---------FSGDLLGP 173
           P +   F+ L+ L L        +P SI +  +L+ L + +            S D  G 
Sbjct: 120 PDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 174 IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL 233
              L +L+++ +        + +S+ NL  L +L +  +    +  L   +     LE L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP---LSALGPAIHHLPKLEEL 234

Query: 234 GLS-LNRLSVLTKATSDTTSQKLKYIGLRSCN-LTKFPNFLQNQHHLRFMDLSDNRIQGK 291
            L     L              LK + L+ C+ L   P  +     L  +DL       +
Sbjct: 235 DLRGCTALRNYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 292 VPKWLLDPNMQNLNGFNFSHNLLTGFDQH-PVVLP 325
           +P  +    +          +L    DQH PV  P
Sbjct: 293 LPSLI--AQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 39/284 (13%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
                + S  + L  +           +  + +         + +        N  + + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ----ANSNNPQ- 59

Query: 183 INVAKCNFSGQITSSLRNLSQ--LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
           I              L + +Q    AL+L       + +         +L+ + +    L
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVP---LPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWL---- 296
             L           L+ + L    L   P  + + + LR + +       ++P+ L    
Sbjct: 117 MELPDTMQQFAG--LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 297 ---LDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEI 352
                  + NL         +         LP +   L       +  L   N+ L+  +
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQ-----NLKSLKIRNSPLS-AL 221

Query: 353 PSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396
              I +L  LE L L         P   G  +  L  L L+  +
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCS 264

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (340), Expect = 9e-36
 Identities = 72/396 (18%), Positives = 148/396 (37%), Gaps = 68/396 (17%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
               +L++ +   L    +     V+   L S+ +L ++   ++S     I  L++L+ L
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           +L+ N+     P+S  NL  L  L +  N       ++++NL +L +L L+ +N S   P
Sbjct: 72  NLNGNQITDISPLS--NLVKLTNLYIGTNK--ITDISALQNLTNLRELYLNEDNISDISP 127

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
               N + +  L+L +          + N T L YL +  +      + PI NL  L ++
Sbjct: 128 --LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL 182

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
           ++          S L +L+ L       N    +  +  +      L  L +  N+++ L
Sbjct: 183 SLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPVANM----TRLNSLKIGNNKITDL 236

Query: 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP--NM 301
           +         +L ++ + +  ++      ++   L+ +++  N+I        +    N+
Sbjct: 237 S---PLANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQISD------ISVLNNL 286

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNI 361
             LN                                      +NN L  E    I  L  
Sbjct: 287 SQLNSLF----------------------------------LNNNQLGNEDMEVIGGLTN 312

Query: 362 LESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           L +L LS N+++ + P  L + S ++   D     +
Sbjct: 313 LTTLFLSQNHITDIRP--LASLS-KMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 7e-34
 Identities = 61/315 (19%), Positives = 124/315 (39%), Gaps = 25/315 (7%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +   L  +  L ++  ++   +   +  L +LE L+L+ N ++      + NL  L  
Sbjct: 37  VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTN 92

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L +  N+       ++ NL +L+ L L+++    ++   + NL  +  L+L  N+   + 
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLNED-NISDIS-PLANLTKMYSLNLGANHNLSD- 147

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
                N + L  L +         P  I N T L  L L  N      + P+ +L SL  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHY 203

Query: 183 INVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV 242
                   +    + + N+++L +L +  N    +  L  L      L +L +  N++S 
Sbjct: 204 FTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANL----SQLTWLEIGTNQISD 257

Query: 243 LTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ 302
           +          KLK + + S  ++       N   L  + L++N++  +  + +    + 
Sbjct: 258 INAVKD---LTKLKMLNVGSNQISDISVL-NNLSQLNSLFLNNNQLGNEDMEVIG--GLT 311

Query: 303 NLNGFNFSHNLLTGF 317
           NL     S N +T  
Sbjct: 312 NLTTLFLSQNHITDI 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 3e-26
 Identities = 56/260 (21%), Positives = 103/260 (39%), Gaps = 35/260 (13%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             S+L NL+ L  L L+ + +    P  + NL  +  L+L AN   S+    + N++ L 
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLN 158

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-----YFGELP---------------TS 101
            L +++++     PI   NL  L  L L+ N          L                T 
Sbjct: 159 YLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP 216

Query: 102 IRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161
           + N+  L  L +  N  +   P    N S L  L++ +        +++ + T+L+ L++
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNV 272

Query: 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD 221
           GSN  S   +  + NL  L ++ +       +    +  L+ LT L L+QN    +  L 
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330

Query: 222 VLLTSWKNLEFLGLSLNRLS 241
            L      ++    +   + 
Sbjct: 331 SL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.2 bits (248), Expect = 4e-23
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
              S L N++ L +L ++ ++++   P  + NL  L  L L+ N +       + +L+SL
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSL 201

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
                  N+     P+   N+  L  L +  N       + + NL  L  L++  N  S 
Sbjct: 202 HYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
                  + + LK+L++ S          + N +QL  L L +N    + +  IG L +L
Sbjct: 258 INAV--KDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
             + +++ + +      L +LS++ + D A  
Sbjct: 314 TTLFLSQNHITD--IRPLASLSKMDSADFANQ 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 9e-36
 Identities = 79/397 (19%), Positives = 149/397 (37%), Gaps = 52/397 (13%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
            +   L++ +   L    +   +  +  +L  +  L      + S     +  L++L ++
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           + S N+     P+   NL  L  + ++ N       T + NL +L  L L  N  +   P
Sbjct: 74  NFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP 129

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
               N ++L  L+L S         ++   T LQ L    N  +   L P+ NL +LE +
Sbjct: 130 --LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERL 182

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
           +++    S    S L  L+ L +L    N    +  L +L     NL+ L L+ N+L  +
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDI 236

Query: 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP--NM 301
               +  +   L  + L +  ++     L     L  + L  N+I        + P   +
Sbjct: 237 ---GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN------ISPLAGL 286

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLN 360
             L     + N L                 P+     +TYL    N+++   P  + +L 
Sbjct: 287 TALTNLELNENQLEDIS-------------PISNLKNLTYLTLYFNNISDISP--VSSLT 331

Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            L+ L   +N +S +    L N ++ +  L    N +
Sbjct: 332 KLQRLFFYNNKVSDVSS--LANLTN-INWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (342), Expect = 4e-35
 Identities = 83/400 (20%), Positives = 154/400 (38%), Gaps = 45/400 (11%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
              +  L+ L  ++ S N+L    P+   NL  L ++ ++ N ++      + NL++L  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 116

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L L  N+     P+   NL +L  L+LS N       +++  L SL++L    N  +   
Sbjct: 117 LTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK 171

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
           P    N ++L+ LD+ S          +   T L+ L   +N  S   + P+G L +L+ 
Sbjct: 172 P--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDE 225

Query: 183 INVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV 242
           +++           +L +L+ LT LDLA N    +  L    +    L  L L  N++S 
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISN 279

Query: 243 LTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ 302
           ++          L  + L    L         ++ L ++ L  N I    P      ++ 
Sbjct: 280 IS---PLAGLTALTNLELNENQLEDISPISNLKN-LTYLTLYFNNISDISPV----SSLT 331

Query: 303 NLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNI 361
            L    F +N ++                 +     I +L A +N ++   P  + NL  
Sbjct: 332 KLQRLFFYNNKVSDVS-------------SLANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 362 LESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK 401
           +  L L+    +        N S    V ++ G  +  + 
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (334), Expect = 5e-34
 Identities = 82/372 (22%), Positives = 146/372 (39%), Gaps = 41/372 (11%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           + L NL+ L  L L  N++    P+   NL +L  L+LS+N +S     ++  L+SL++L
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--ISALSGLTSLQQL 161

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
               N+     P+   NL +L+ LD+S N       + +  L +LE L  + N  S   P
Sbjct: 162 SFG-NQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
              G  ++L  L L       K   ++ + T L  L L +N  S   L P+  L  L  +
Sbjct: 217 --LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTEL 270

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
            +     S    S L  L+ LT L+L +N    +  +  L    KNL +L L  N +S +
Sbjct: 271 KLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL----KNLTYLTLYFNNISDI 324

Query: 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQN 303
           +     ++  KL+ +   +  ++   +     + + ++    N+I    P      N+  
Sbjct: 325 S---PVSSLTKLQRLFFYNNKVSDVSSLANLTN-INWLSAGHNQISDLTP----LANLTR 376

Query: 304 LNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILE 363
           +     +    T              P+      +I     N +     P+ I +     
Sbjct: 377 ITQLGLNDQAWTNA------------PVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 364 SLVLSHNNLSGL 375
              ++ N  S  
Sbjct: 425 EPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 58/293 (19%), Positives = 104/293 (35%), Gaps = 21/293 (7%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
              S L  L+ L  L  + N++    P  +G L +L+EL L+ N L      ++ +L++L
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
            +LDL+ N+     P+S   L  L  L L  N     +   +  L +L  L+L+ N    
Sbjct: 246 TDLDLANNQISNLAPLS--GLTKLTELKLGAN-QISNIS-PLAGLTALTNLELNENQLED 301

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
             P    N  +L  L L            + + T+LQ L   +N  S   +  + NL ++
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
             ++      S    + L NL+++T L L   ++         +    N+       N  
Sbjct: 356 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAP-----VNYKANVSIPNTVKNVT 408

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVP 293
             L    + +         +     +              +        G V 
Sbjct: 409 GALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 9/171 (5%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           S + NL  L +L L  N +    PVS  +L  L+ L    N +S     S+ NL+++  L
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWL 358

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
               N+     P++  NL  +  L L+    +   P + +   S+     +        P
Sbjct: 359 SAGHNQISDLTPLA--NLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVTGAL-IAP 414

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI 174
            +  +  S    D+ +             F+Q   +  G+  FSG +  P+
Sbjct: 415 ATISDGGSYTEPDI-TWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 1e-33
 Identities = 80/418 (19%), Positives = 151/418 (36%), Gaps = 35/418 (8%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            IPS L   + +  LDLS N++       +    +L+ L L ++ +++    +  +L SL
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFS 119
           + LDLS N          G L SLK L+L  N Y    + +   NL +L+ L +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 120 GEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
            E         +SL  L++++         S+ +   + +L L  +  +  L      L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 179 SLEAINVAKCN--------FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNL 230
           S+  + +   N              SS           L   S+  +++L   +     +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 231 EFLGLSLNRLSVLTKATSDTTSQ-------KLKYIGLRSCNLTK-FPNFLQNQHHLRFMD 282
           EF   +LN L     + SD  S+        ++ + +    L             ++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 283 LSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL 342
           + ++++   VP      ++++L   + S NL+             KG  P     ++  L
Sbjct: 317 VENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKN---SACKGAWP-----SLQTL 366

Query: 343 -ASNNSLT--GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             S N L    +    +  L  L SL +S N    +   C       +  L+L    +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (303), Expect = 2e-29
 Identities = 80/418 (19%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           + S   NL+ L  L +   E   E+       L SL EL++ A  L +    S+ ++  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL--------- 111
             L L  +     L I    L S++ L+L          + +        +         
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 112 --DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF--------TQLQYLHL 161
             D SFN    +        S ++  D    G     P                ++ LH+
Sbjct: 235 LTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS-YRGMIEL 220
                  DL      L  ++ I V          S  ++L  L  LDL++N      ++ 
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 221 DVLLTSWKNLEFLGLSLNRLSVLTKATSDTTS-QKLKYIGLRSCNLTKFPNFLQNQHHLR 279
                +W +L+ L LS N L  + K      + + L  + +        P+  Q    +R
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 280 FMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTI 339
           F++LS   I+      +     Q L   + S+N L  F      L               
Sbjct: 414 FLNLSSTGIR-----VVKTCIPQTLEVLDVSNNNLDSFSLFLPRL-------------QE 455

Query: 340 TYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            Y+ S N L   +P       +L  + +S N L  +        +  L  + L  N  
Sbjct: 456 LYI-SRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLT-SLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 25/293 (8%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             S   L KLL   L L+E+         +       D + +       +      +++ 
Sbjct: 237 DESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L + Q   F +L      L  +K + +  +  F    +  ++L SLE LDLS N    E+
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 123 PWST---GNFSSLKLLDLRSCGFW--GKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
             ++   G + SL+ L L         K    +     L  L +  N F   +       
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL 237
             +  +N++       + + +     L  LD++ N+      LD        L+ L +S 
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN------LDSFSLFLPRLQELYISR 460

Query: 238 NRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQ 289
           N+L  L      +    L  + +    L   P         L+ + L  N   
Sbjct: 461 NKLKTL---PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 45/189 (23%), Positives = 68/189 (35%), Gaps = 25/189 (13%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGEL---PVSVGNLHSLEELDLSANFLSSEWPIS--IGNL 57
            S   +L  L  LDLS N +  E        G   SL+ L LS N L S       +  L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG---YFGELPTSIR----------- 103
            +L  LD+S+N F   +P S      ++ L+LS  G       +P ++            
Sbjct: 387 KNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445

Query: 104 ---NLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH 160
               L  L++L +S N      P     F  L ++ +                T LQ + 
Sbjct: 446 FSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 161 LGSNNFSGD 169
           L +N +   
Sbjct: 504 LHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 16/156 (10%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P S     K+  L+LS   ++    V      +LE LD+S N L S    S+  L  L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDS---FSL-FLPRL 453

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNF- 118
           +EL +S+N+    LP        L V+ +S+N     +P  I   L SL+K+ L  N + 
Sbjct: 454 QELYISRNK-LKTLP-DASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510

Query: 119 ----SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
                 ++     N +S K      C   GK   SI
Sbjct: 511 CSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 546

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 20/231 (8%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P G   ++++++++    +      LR  + L  L L  +     IE D    S  +LE 
Sbjct: 21  PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAF-YSLGSLEH 78

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN--FLQNQHHLRFMDLSDNRIQG 290
           L LS N LS L+ +     S  LKY+ L               N  +L+ + + +     
Sbjct: 79  LDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 291 KVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLT 349
           ++ +      + +LN        L  +         +   +       I +L    +   
Sbjct: 138 EIRRIDFA-GLTSLNELEIKALSLRNYQ------SQSLKSIR-----DIHHLTLHLSESA 185

Query: 350 GEIPSWICNLNILESLVLSHNNLSGL--LPQCLGNFSDELLVLDLQGNNLP 398
             +  +   L+ +  L L   NL+     P  +   S  +  L  +G+ L 
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (332), Expect = 5e-33
 Identities = 87/421 (20%), Positives = 145/421 (34%), Gaps = 49/421 (11%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW--PISIGNLSSL 60
             +  NL  L  LDL  +++    P +   L  L EL L    LS          NL +L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 61  KELDLSQNRFFG-ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLF--SLEKLDLSFNN 117
             LDLS+N+     L  S G L SLK +D S N  F      +  L   +L    L+ N+
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 118 FSGEFPWSTGNFS------SLKLLDLRSCGFWGKVP------------HSIGNFTQLQYL 159
                    G          L++LD+   G+   +              S+     +   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 160 HLGSNNFSGDLLGPIGNLR--SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM 217
             G +N           L   S+  ++++        +     L  L  L+LA N    +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQH 276
              D       NL+ L LS N L  L  +++     K+ YI L+  ++        +   
Sbjct: 306 --ADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 277 HLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPP 336
            L+ +DL DN +            + ++     S N L    +  +              
Sbjct: 363 KLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKLVTLPKINLTA------------ 403

Query: 337 GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396
             + +L+ N     +I  ++  +  L+ L+L+ N  S        + +  L  L L  N 
Sbjct: 404 -NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 397 L 397
           L
Sbjct: 463 L 463

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (298), Expect = 1e-28
 Identities = 67/398 (16%), Positives = 120/398 (30%), Gaps = 79/398 (19%)

Query: 7   GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNL--SSLKELD 64
           GN   +       N +      S+   H +       + +      +   L  SS++ LD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 65  LSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW 124
           LS    F         L  LKVL+L+ N        +   L +L+ L+LS+N     +  
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 125 STGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAIN 184
           +      +  +DL+          +     +LQ L L  N  +                 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----------------- 375

Query: 185 VAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244
                       ++  +  +  + L+ N    + ++++          + LS NRL  L 
Sbjct: 376 ------------TIHFIPSIPDIFLSGNKLVTLPKINL------TANLIHLSENRLENLD 417

Query: 245 KATSDTTSQKLKYIGLRSCNLTKFPN--FLQNQHHLRFMDLSDNRIQGKVPKWLLDP--- 299
                     L+ + L     +             L  + L +N +Q      L      
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNL 359
            + +L     +HN L                    PPG  ++L +               
Sbjct: 478 GLSHLQVLYLNHNYLNSL-----------------PPGVFSHLTA--------------- 505

Query: 360 NILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
             L  L L+ N L+ L      +    L +LD+  N L
Sbjct: 506 --LRGLSLNSNRLTVLSH---NDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 8e-28
 Identities = 60/307 (19%), Positives = 116/307 (37%), Gaps = 16/307 (5%)

Query: 9   LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN 68
            S + HLDLS   +          L  L+ L+L+ N ++     +   L +L+ L+LS N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 69  RFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN 128
                   +   L  +  +DL +N        + + L  L+ LDL  N  +     +   
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379

Query: 129 FSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG-DLLGPIGNLRSLEAINVAK 187
             S+  + L       K+            +HL  N     D+L  +  +  L+ + + +
Sbjct: 380 IPSIPDIFLSGN----KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 188 CNFSG-QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWK---NLEFLGLSLNRLSVL 243
             FS      +      L  L L +N  +   E ++    ++   +L+ L L+ N L+ L
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQN 303
                   +  L+ + L S  LT   +      +L  +D+S N++    P   +  ++ +
Sbjct: 496 PPGVFSHLTA-LRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLD 553

Query: 304 LNGFNFS 310
           +    F 
Sbjct: 554 ITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (280), Expect = 2e-26
 Identities = 74/392 (18%), Positives = 135/392 (34%), Gaps = 46/392 (11%)

Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL-PISMGNLGSLKVLDLS 90
            L++ E L LS N++ +    S   L  L+ L+L        +   +  NL +L++LDL 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 91  QNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEF--PWSTGNFSSLKLLDLRSCGFWG-KV 146
            +     L     + LF L +L L F   S          N  +L  LDL         +
Sbjct: 82  SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR--SLEAINVAKCNFSGQITSSLRNLSQ- 203
             S G    L+ +   SN         +  L+  +L   ++A  +   +++         
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 204 -----LTALDLAQNSYRGMIE----------LDVLLTSWKNLEFLGLSLNRLSVLTKAT- 247
                L  LD++ N +   I               L    ++   G   + +    + T 
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 248 SDTTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNG 306
           +      ++++ L    +        +    L+ ++L+ N+I     +      + NL  
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQV 318

Query: 307 FNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESL 365
            N S+NLL            N   LP      + Y+    N +          L  L++L
Sbjct: 319 LNLSYNLLGELY------SSNFYGLP-----KVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 366 VLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            L  N L+ +      +F   +  + L GN L
Sbjct: 368 DLRDNALTTI------HFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 1e-25
 Identities = 60/294 (20%), Positives = 102/294 (34%), Gaps = 23/294 (7%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
                 L  L  L+L+ N++      +   L +L+ L+LS N L   +  +   L  +  
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           +DL +N        +   L  L+ LDL  N       T+I  + S+  + LS N      
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVT-- 395

Query: 123 PWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFSG-DLLGPIGNLRSL 180
                   +  L+ L         + + +     LQ L L  N FS            SL
Sbjct: 396 --LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 181 EAINVAKCNFSGQITSSL-----RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
           E + + +        + L       LS L  L L  N    +     + +    L  L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG--VFSHLTALRGLSL 511

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ 289
           + NRL+VL   + +     L+ + +    L            L  +D++ N+  
Sbjct: 512 NSNRLTVL---SHNDLPANLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.0 bits (213), Expect = 5e-18
 Identities = 59/308 (19%), Positives = 97/308 (31%), Gaps = 39/308 (12%)

Query: 103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV-PHSIGNFTQLQYLHL 161
           + L + E+L LSFN        S      L+LL+L S      +   +  N   L+ L L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD 221
           GS+            +  L                + + L  L  L L        +  D
Sbjct: 81  GSSK-----------IYFLHP-------------DAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 222 VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN----FLQNQHH 277
               + K L  L LS N++  L    S      LK I   S  +          LQ +  
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-T 175

Query: 278 LRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGF--DQHPVVLPGNKGPL 331
           L F  L+ N +  +V               L   + S N  T          +  ++   
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 332 PVPPPGTITYLASNNSLTGEIPSWICNL--NILESLVLSHNNLSGLLPQCLGNFSDELLV 389
            +     +      +++     +    L  + +  L LSH  +  L  +       +L V
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKV 294

Query: 390 LDLQGNNL 397
           L+L  N +
Sbjct: 295 LNLAYNKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQG-ELPVSVGNLHSLEELDLSANFLSSEWPISI----- 54
            I   L  +  L  L L+ N         +     SLE+L L  N L   W   +     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 55  GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114
             LS L+ L L+ N      P    +L +L+ L L+ N     L  +     +LE LD+S
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHND-LPANLEILDIS 534

Query: 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
            N      P     F SL +LD+    F
Sbjct: 535 RNQLLAPNPDV---FVSLSVLDITHNKF 559

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 5e-32
 Identities = 82/425 (19%), Positives = 143/425 (33%), Gaps = 42/425 (9%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           IP +L       +LDLS N L+     S  +   L+ LDLS   + +    +  +LS L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF-SG 120
            L L+ N        +   L SL+ L   +          I +L +L++L+++ N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQY----LHLGSNNFSGDLLGPIGN 176
           + P    N ++L+ LDL S          +    Q+      L L  N  +    G    
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 177 LRSLEAINVAKCNFSGQITS-SLRNLSQLTALDLAQNSYRGMIELDVL----LTSWKNLE 231
           +  L  + +     S  +    ++ L+ L    L    +R    L+      L    NL 
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 232 FLGLSLNRLSVLTKATSDTTS--QKLKYIGLRSCNLTKFPN--FLQNQHHLRFMDLSDNR 287
                L  L        D  +    +    L S  + +  +  +     HL  ++    +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 288 IQGKVPKWLL--------------DPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333
                 K L               + ++ +L   + S N L+          G       
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT----- 373

Query: 334 PPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL 392
               ++ YL  S N +   + S    L  LE L   H+NL  +    +      L+ LD+
Sbjct: 374 ----SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 393 QGNNL 397
              + 
Sbjct: 429 SHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (320), Expect = 1e-31
 Identities = 87/412 (21%), Positives = 147/412 (35%), Gaps = 40/412 (9%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +  +LS L  L L+ N +Q     +   L SL++L      L+S     IG+L +LKE
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 63  LDLSQNRF-FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE----KLDLSFNN 117
           L+++ N     +LP    NL +L+ LDLS N       T +R L  +      LDLS N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPH-SIGNFTQLQYLHL------GSNNFSGDL 170
            +            L  L LR+      V    I     L+   L         N     
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 171 LGPIGNLRSL--EAINVAKCNFSG-QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227
              +  L +L  E   +A  ++    I      L+ +++  L   +    ++       W
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGW 306

Query: 228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNR 287
           ++LE +     +   L         + LK +   S       + + +   L F+DLS N 
Sbjct: 307 QHLELVNCKFGQFPTLKL-------KSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNG 358

Query: 288 IQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNN 346
           +  K      D    +L   + S N +     + + L              + +L   ++
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE------------QLEHLDFQHS 406

Query: 347 SLTGEIPSWI-CNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           +L       +  +L  L  L +SH +            S  L VL + GN+ 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (274), Expect = 1e-25
 Identities = 79/418 (18%), Positives = 141/418 (33%), Gaps = 48/418 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLE----ELDLSANFLSSEWPISIGN 56
           ++P    NL+ L HLDLS N++Q      +  LH +      LDLS N ++   P +   
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 57  LSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQN-------------GYFGELPTSI 102
           +  L +L L  N     +  +    L  L+V  L                     L    
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG 162
              F L  LD   ++    F       +++    L S         S       Q+L L 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFN----CLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELV 312

Query: 163 SNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDV 222
           +  F       + +L+ L        +  G    S  +L  L  LDL++N          
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFT-----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 223 LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN--FLQNQHHLRF 280
                 +L++L LS N +  ++          L+++  +  NL +        +  +L +
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 281 MDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTIT 340
           +D+S    +      + +  + +L     + N           LP     L       +T
Sbjct: 426 LDISHTHTRV-AFNGIFN-GLSSLEVLKMAGNSFQEN-----FLPDIFTELR-----NLT 473

Query: 341 YL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           +L  S   L    P+   +L+ L+ L ++ N L  +        +  L  + L  N  
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 55/317 (17%), Positives = 101/317 (31%), Gaps = 9/317 (2%)

Query: 85  KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144
                 +  ++ ++P ++    S + LDLSFN       +S  +F  L++LDL  C    
Sbjct: 10  ITYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 145 KVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQL 204
               +  + + L  L L  N      LG    L SL+ +   + N +      + +L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQ---KLKYIGLR 261
             L++A N  +   +L    ++  NLE L LS N++  +         Q       + L 
Sbjct: 127 KELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 262 SCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321
              +         +  L  + L +N     V K  +   +  L                 
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLE 244

Query: 322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 381
                    L          LA  +    +I      L  + S  L    +  +      
Sbjct: 245 KFDKSALEGLC-NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 382 NFSDELLVLDLQGNNLP 398
                L +++ +    P
Sbjct: 304 FGWQHLELVNCKFGQFP 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 37/229 (16%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P     S + ++++        + S  +  +L  LDL++   +  IE      S  +L  
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY-QSLSHLST 80

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN-FLQNQHHLRFMDLSDNRIQGK 291
           L L+ N +  L        S  L+ +     NL    N  + +   L+ ++++ N IQ  
Sbjct: 81  LILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-S 138

Query: 292 VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE 351
                   N+ NL   + S N +                        +  L     L   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSI-----------------YCTDLRVLHQMPLL--- 178

Query: 352 IPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLS 400
                       SL LS N ++ + P         L  L L+ N   L+
Sbjct: 179 ----------NLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLN 215

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (314), Expect = 2e-31
 Identities = 76/411 (18%), Positives = 135/411 (32%), Gaps = 55/411 (13%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           I     N ++     ++ + L+  L     +  +++ELDLS N LS      +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L+LS N  +  L +   +L +L+ LDL+ N         +    S+E L  + NN S  
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISR- 113

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
              S       K + L +           G  +++QYL L  N               ++
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--------------ID 157

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
            +N A             +   L  L+L  N     ++  V+      L+ L LS N+L+
Sbjct: 158 TVNFA---------ELAASSDTLEHLNLQYNFIY-DVKGQVVFA---KLKTLDLSSNKLA 204

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
            +           + +I LR+  L      L+   +L   DL  N       +     N 
Sbjct: 205 FMGPEFQSAAG--VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNK-------GPLPVPPPGTITYLASN--------N 346
           +       +   LTG ++    +P            LP P    +  L            
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 347 SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           S T  +     N      +         ++ Q         + L+ +   L
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ-AKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 33/274 (12%), Positives = 73/274 (26%), Gaps = 13/274 (4%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +   +   +KL  LDLS N+L   +     +   +  + L  N L      ++    +L
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239

Query: 61  KELDLSQNRF-FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
           +  DL  N F  G L         ++ +                                
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN--EEECTVPTLGHYGAYCCE 297

Query: 120 GEFPWSTGNFSSLKLLDLRSCGFWG----KVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG 175
                      +LK  +       G    ++     N  + + +      +   +     
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 176 NLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
             ++   +   K     Q+++  R  ++L             IEL         L+ L  
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ---IELQHATEEQSPLQLLRA 414

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
            + R   +        +  ++   +     T+  
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 5e-30
 Identities = 78/396 (19%), Positives = 131/396 (33%), Gaps = 73/396 (18%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +P    +L  LL  + +L  L    P        LE L +S N L       + N S LK
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLK 156

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            +D+  N    +LP       SL+ +    N    ELP  ++NL  L  +    N+   +
Sbjct: 157 IIDVDNNSL-KKLP---DLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLK-K 209

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P       SL+ +   +     +    + N   L  ++  +N     L     +L +L 
Sbjct: 210 LP---DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN 263

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
             +         +T        LT LD+++N          L     NL +L  S N + 
Sbjct: 264 VRDN-------YLTDLPELPQSLTFLDVSENI------FSGLSELPPNLYYLNASSNEIR 310

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
            L           L+ + + +  L + P        L  +  S N +        +    
Sbjct: 311 SLCDLPP-----SLEELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELP 356

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNI 361
           QNL   +  +N L  F                  P ++  L  N+ L  E+P    NL  
Sbjct: 357 QNLKQLHVEYNPLREFP---------------DIPESVEDLRMNSHLA-EVPELPQNL-- 398

Query: 362 LESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            + L +  N L    P    +    +  L +    +
Sbjct: 399 -KQLHVETNPLRE-FPDIPES----VEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (299), Expect = 2e-29
 Identities = 95/411 (23%), Positives = 145/411 (35%), Gaps = 80/411 (19%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNL-------------HSLEELDLSANFLS 47
            +P    N+        + +E +   P   G                   EL+L+   LS
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 48  SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS 107
           S  P    +   L+ L  S N    ELP    +L SL V + +      +LP        
Sbjct: 85  S-LPELPPH---LESLVASCNS-LTELPELPQSLKSLLVDNNNLK-ALSDLPP------L 132

Query: 108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
           LE L +S N    + P    N S LK++D+ +     K+P    +   L+++  G+N   
Sbjct: 133 LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQLE 186

Query: 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227
              L  + NL  L AI          +         L ++    N    + EL  L    
Sbjct: 187 E--LPELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILEELPELQNL---- 236

Query: 228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNR 287
             L  +    N L  L           L+ + +R   LT  P   Q+   L F+D+S+N 
Sbjct: 237 PFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNYLTDLPELPQS---LTFLDVSENI 288

Query: 288 IQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNN 346
             G      L     NL   N S N +         L           P ++  L  SNN
Sbjct: 289 FSG------LSELPPNLYYLNASSNEIR-------SLCDL--------PPSLEELNVSNN 327

Query: 347 SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            L  E+P+       LE L+ S N+L+  +P+   N    L  L ++ N L
Sbjct: 328 KLI-ELPALPPR---LERLIASFNHLAE-VPELPQN----LKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 47/241 (19%), Positives = 75/241 (31%), Gaps = 40/241 (16%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +P    +L  L   D  L +L    P    +L  L+  +   + LS           +L 
Sbjct: 252 LPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSEL-------PPNLY 300

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L+ S N     L        SL+ L++S N    ELP     L   E+L  SFN+ + E
Sbjct: 301 YLNASSNEI-RSLC---DLPPSLEELNVSNN-KLIELPALPPRL---ERLIASFNHLA-E 351

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P    N   LK L +       + P    +   L+      N+   ++     NL+ L 
Sbjct: 352 VPELPQN---LKQLHVEYNPL-REFPDIPESVEDLR-----MNSHLAEVPELPQNLKQL- 401

Query: 182 AINVAKCNFSG-QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
                  +     +         +  L +         E     T    LE      +  
Sbjct: 402 -------HVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTD--KLEDDVFEHHHH 452

Query: 241 S 241
            
Sbjct: 453 H 453

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 1e-29
 Identities = 65/315 (20%), Positives = 113/315 (35%), Gaps = 39/315 (12%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           I     N ++     ++ + L+  L     +  +++ELDLS N LS      +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L+LS N  +  L +   +L +L+ LDL+ N         +    S+E L  + NN S  
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISR- 113

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
              S       K + L +           G  +++QYL L  N               ++
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--------------ID 157

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
            +N A             +   L  L+L  N     ++  V+      L+ L LS N+L+
Sbjct: 158 TVNFA---------ELAASSDTLEHLNLQYNFIY-DVKGQVVFA---KLKTLDLSSNKLA 204

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
            +           + +I LR+  L      L+   +L   DL  N       +     N 
Sbjct: 205 FMGPEFQSAAG--VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 302 QNLNGFNFSHNLLTG 316
           +       +   LTG
Sbjct: 263 RVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 33/302 (10%)

Query: 98  LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ 157
           +    +N    +   ++ ++          +  ++K LDL            +  FT+L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 158 YLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM 217
            L+L SN         + +L +L  +++            L     +  L  A N+    
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-- 112

Query: 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN--FLQNQ 275
               V  +  +  + + L+ N++++L        S +++Y+ L+   +          + 
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASS 168

Query: 276 HHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPP 335
             L  ++L  N I   V   ++   ++ L+    S N L         +           
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVFAKLKTLD---LSSNKLA-------FMGPEFQSAA--- 214

Query: 336 PGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQG 394
              +T++   NN L   I   +     LE   L  N       +   + +  +  +  Q 
Sbjct: 215 --GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 395 NN 396
             
Sbjct: 272 VK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 9e-11
 Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 52/249 (20%)

Query: 150 IGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDL 209
             N  + +   +  ++    L     +  +++ ++++    S    + L   ++L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
           + N     ++L+ L      L  L L+ N +  L    S      ++ +   + N+++  
Sbjct: 66  SSNVLYETLDLESL----STLRTLDLNNNYVQELLVGPS------IETLHAANNNISRVS 115

Query: 270 -NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328
            +  Q     + + L++N+I   +           +   +   N +   +          
Sbjct: 116 CSRGQG---KKNIYLANNKIT-MLRDLDEG-CRSRVQYLDLKLNEIDTVN---------- 160

Query: 329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELL 388
                                        + + LE L L +N +  +  Q       +L 
Sbjct: 161 -----------------------FAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLK 194

Query: 389 VLDLQGNNL 397
            LDL  N L
Sbjct: 195 TLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 32/208 (15%)

Query: 194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQ 253
           I    +N ++     +  +S +  +    L  S  N++ L LS N LS +  A       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFT 58

Query: 254 KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL 313
           KL+ + L S  L +  +  ++   LR +DL++N +Q             ++   + ++N 
Sbjct: 59  KLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQEL-------LVGPSIETLHAANNN 110

Query: 314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLA----SNNSLTGEIPSWICNLNILESLVLSH 369
           ++                                +NN +T          + ++ L L  
Sbjct: 111 ISRV-----------------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 370 NNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           N +  +    L   SD L  L+LQ N +
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 9/120 (7%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW-PISIGNLSS 59
            +     + + +  + L  N+L   +  ++    +LE  DL  N                
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 60  LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
           ++ +     +   +L        ++  L         +LP      F+   + L  ++  
Sbjct: 264 VQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 3e-26
 Identities = 66/317 (20%), Positives = 131/317 (41%), Gaps = 12/317 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P  +   ++   LDL  N ++        +   LEEL+L+ N +S+  P +  NL +L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 61  KELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
           + L L  NR    +P+ +   L +L  LD+S+N     L    ++L++L+ L++  N+  
Sbjct: 83  RTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 120 GEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
                      +SL+ L L  C        ++ +   L  L L   N +         L 
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN 238
            L+ + ++   +   +T +      LT+L +   +    +   + +     L FL LS N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-YLAVRHLVYLRFLNLSYN 258

Query: 239 RLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSDNRIQGKVPKWLL 297
            +S +  +       +L+ I L    L     +  +  ++LR +++S N++   + + + 
Sbjct: 259 PISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 298 DPNMQNLNGFNFSHNLL 314
              + NL       N L
Sbjct: 317 HS-VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 4/167 (2%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +L +L  L+ L L    +      S   L+ L+ L++S          +     +L  
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 63  LDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSG 120
           L ++       +P     +L  L+ L+LS N     +  S+   L  L+++ L     + 
Sbjct: 229 LSITHCNL-TAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
             P++    + L++L++              +   L+ L L SN  +
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 56/270 (20%), Positives = 91/270 (33%), Gaps = 41/270 (15%)

Query: 129 FSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188
            +  +LLDL              +F  L+ L L  N  S    G   NL +L  + +   
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248
                       LS LT LD+++N    +  LD +     NL+ L +  N L  ++    
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 249 DTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307
              +  L+ + L  CNLT  P   L + H L  + L    I        +         F
Sbjct: 149 SGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA------IRDYS-----F 196

Query: 308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVL 367
              + L                            ++    L    P+ +  LN L SL +
Sbjct: 197 KRLYRLKV------------------------LEISHWPYLDTMTPNCLYGLN-LTSLSI 231

Query: 368 SHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           +H NL+ +    + +    L  L+L  N +
Sbjct: 232 THCNLTAVPYLAVRHLV-YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 41/226 (18%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P G       +++ K            +   L  L+L +N     +E      +  NL  
Sbjct: 27  PEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAF-NNLFNLRT 84

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGK 291
           LGL  NRL ++        S  L  + +    +    +++ Q+ ++L+ +++ DN +   
Sbjct: 85  LGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-Y 142

Query: 292 VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE 351
           +        + +L         LT                                    
Sbjct: 143 ISHRAFS-GLNSLEQLTLEKCNLTSIP--------------------------------- 168

Query: 352 IPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
               + +L+ L  L L H N++ +           L VL++     
Sbjct: 169 -TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-LKVLEISHWPY 212

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (277), Expect = 4e-26
 Identities = 70/374 (18%), Positives = 120/374 (32%), Gaps = 52/374 (13%)

Query: 9   LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN 68
            +    L++  + L   LP  +     +  L +  N L+S  P     L   + L++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPEL---RTLEVSGN 91

Query: 69  RFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN 128
           +    LP+    L  L +           LP        L KL +  N  +   P     
Sbjct: 92  Q-LTSLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLT-SLP---VL 139

Query: 129 FSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188
              L+ L +        +P        L  L   +N  +  L      L+ L   +    
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSVSD---- 190

Query: 189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248
           N   Q+ S     S+L  L    N       L  L      L+ L +S NRL+ L    S
Sbjct: 191 N---QLASLPTLPSELYKLWAYNNR------LTSLPALPSGLKELIVSGNRLTSLPVLPS 241

Query: 249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFN 308
                +LK + +    LT  P        L  + +  N++  ++P+ L+  ++ +    N
Sbjct: 242 -----ELKELMVSGNRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLI--HLSSETTVN 290

Query: 309 FSHNLLT----GFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILES 364
              N L+       +     PG  GP+        +      +L      W+      E 
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

Query: 365 LVLSHNNLSGLLPQ 378
                 ++ G    
Sbjct: 351 APADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 4e-22
 Identities = 68/371 (18%), Positives = 106/371 (28%), Gaps = 80/371 (21%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P+    L     L++S N+L   LPV    L  L         L +         S L
Sbjct: 75  SLPALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGL 123

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
            +L +  N+    LP+       L+ L +S N     LP        L KL    N  + 
Sbjct: 124 CKLWIFGNQ-LTSLPVLPPG---LQELSVSDN-QLASLPALPSE---LCKLWAYNNQLT- 174

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
                                    +P        LQ L +  N  +  L      L  L
Sbjct: 175 ------------------------SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKL 206

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
            A N        ++TS     S L  L ++ N       L  L      L+ L +S NRL
Sbjct: 207 WAYNN-------RLTSLPALPSGLKELIVSGN------RLTSLPVLPSELKELMVSGNRL 253

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPN 300
           + L           L  + +    LT+ P  L +      ++L  N +            
Sbjct: 254 TSL-----PMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE-----RTLQA 303

Query: 301 MQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLN 360
           ++ +         +  FD      P     L         +LA+ + L           +
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRAL---------HLAAADWLVPAREGEPAPAD 354

Query: 361 ILESLVLSHNN 371
                    N 
Sbjct: 355 RWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 1e-20
 Identities = 61/320 (19%), Positives = 95/320 (29%), Gaps = 43/320 (13%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P     L +L      L  L             L +L +  N L+S  P+       L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS-LPVLPPG---L 143

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           +EL +S N+    LP        L  L    N     LP        L++L +S N  + 
Sbjct: 144 QELSVSDNQ-LASLP---ALPSELCKLWAYNN-QLTSLPMLPSG---LQELSVSDNQLA- 194

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
             P        L   + R       +P        L+ L +  N  +  L      L+ L
Sbjct: 195 SLPTLPSELYKLWAYNNRLT----SLPALPSG---LKELIVSGNRLT-SLPVLPSELKEL 246

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
                       ++TS     S L +L + +N       L   L    +   + L  N L
Sbjct: 247 MVSGN-------RLTSLPMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPL 296

Query: 241 SVLTKATSDTTSQKLKYIGLR---SCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVP--KW 295
           S  T       +    Y G            P   +  H      L   R     P  +W
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 296 LLDPNMQNLNGFNFSHNLLT 315
            +     N + F+   + L+
Sbjct: 357 HMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 54/203 (26%)

Query: 201 LSQLTALDLAQNSYRGMIELDVLLTS-----WKNLEFLGLSLNRLSVLTKATSDTTSQKL 255
            +    L++ ++           LT+       ++  L +  N L+ L          +L
Sbjct: 39  NNGNAVLNVGESG----------LTTLPDCLPAHITTLVIPDNNLTSLPALPP-----EL 83

Query: 256 KYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315
           + + +    LT  P        L                  L      L       N LT
Sbjct: 84  RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH---------LPALPSGLCKLWIFGNQLT 134

Query: 316 GFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSG 374
                               P  +  L  S+N L   +P+       L  L   +N L+ 
Sbjct: 135 SLPVL---------------PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS 175

Query: 375 LLPQCLGNFSDELLVLDLQGNNL 397
            LP         L  L +  N L
Sbjct: 176 -LPMLPSG----LQELSVSDNQL 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (269), Expect = 9e-26
 Identities = 71/399 (17%), Positives = 129/399 (32%), Gaps = 63/399 (15%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           I S+L        + + +             L++ + +    + +       + +   ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSG 120
            L+L+  +       +     +++ L +  N     LP  + +N+  L  L L  N+ S 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 121 EFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRS 179
             P     N   L  L + +         +    T LQ L L SN  +            
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT------------ 178

Query: 180 LEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
                             L  +  L   +++ N           L     +E L  S N 
Sbjct: 179 ---------------HVDLSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNS 216

Query: 240 LSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP 299
           ++V+        + +L  + L+  NLT       N   L  +DLS N ++ K+       
Sbjct: 217 INVV----RGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV- 269

Query: 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSWICN 358
            MQ L     S+N L   + +   +P            T+  L  S+N L   +      
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIP------------TLKVLDLSHNHLL-HVERNQPQ 316

Query: 359 LNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            + LE+L L HN++  L           L  L L  N+ 
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHT----LKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 64/391 (16%), Positives = 128/391 (32%), Gaps = 61/391 (15%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            L+    +    + ++      + +   +E L+L+   +      +     ++++L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWST 126
           N      P    N+  L VL L +N     LP  I  N   L  L +S NN       + 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 127 GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA 186
              +SL+ L L S      V   +     L + ++  N      L  +    ++E ++ +
Sbjct: 162 QATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNL-----LSTLAIPIAVEELDAS 213

Query: 187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246
             + +  +   +    +LT L L  N+   + +   L  ++  L  + LS N L  +   
Sbjct: 214 HNSIN-VVRGPV--NVELTILKLQHNN---LTDTAWL-LNYPGLVEVDLSYNELEKIMYH 266

Query: 247 TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNG 306
                 + L+ + + +  L     + Q    L+ +DLS N +   V +    P    L  
Sbjct: 267 PFVKMQR-LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLEN 322

Query: 307 FNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLV 366
               HN +         L  +                                + L++L 
Sbjct: 323 LYLDHNSIV-------TLKLS------------------------------THHTLKNLT 345

Query: 367 LSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           LSHN+        L      +    +   + 
Sbjct: 346 LSHNDWDCN---SLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 11/178 (6%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           S+L     +  LD S N +     V       L  L L  N L+      + N   L E+
Sbjct: 199 STLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 253

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           DLS N     +      +  L+ L +S N     L    + + +L+ LDLS N+      
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD-LLGPIGNLRSL 180
            +   F  L+ L L        +   +     L+ L L  N++  + L     N+   
Sbjct: 312 RNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (254), Expect = 3e-23
 Identities = 71/399 (17%), Positives = 129/399 (32%), Gaps = 63/399 (15%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           I S+L        + + +             L++ + +    + +       + +   ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSG 120
            L+L+  +       +     +++ L +  N     LP  + +N+  L  L L  N+ S 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS- 136

Query: 121 EFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRS 179
             P     N   L  L + +         +    T LQ L L SN  +            
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT------------ 184

Query: 180 LEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
                             L  +  L   +++ N           L     +E L  S N 
Sbjct: 185 ---------------HVDLSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNS 222

Query: 240 LSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP 299
           ++V+        + +L  + L+  NLT       N   L  +DLS N ++ K+       
Sbjct: 223 INVV----RGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV- 275

Query: 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICN 358
            MQ L     S+N L   + +   +P            T+  L  S+N L   +      
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIP------------TLKVLDLSHNHLL-HVERNQPQ 322

Query: 359 LNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            + LE+L L HN++  L           L  L L  N+ 
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHT----LKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.1 bits (244), Expect = 5e-22
 Identities = 64/392 (16%), Positives = 126/392 (32%), Gaps = 63/392 (16%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            L+    +    + ++      + +   +E L+L+   +      +     ++++L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWST 126
           N      P    N+  L VL L +N     LP  I  N   L  L +S NN        T
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 127 -GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINV 185
               +SL+ L L S      V   +     L + ++  N      L  +    ++E ++ 
Sbjct: 167 FQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNL-----LSTLAIPIAVEELDA 218

Query: 186 AKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245
           +  + +  +   +    +LT L L  N+   + +   L  ++  L  + LS N L  +  
Sbjct: 219 SHNSIN-VVRGPV--NVELTILKLQHNN---LTDTAWL-LNYPGLVEVDLSYNELEKIMY 271

Query: 246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLN 305
                  + L+ + + +  L     + Q    L+ +DLS N +   V +    P    L 
Sbjct: 272 HPFVKMQR-LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLE 327

Query: 306 GFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESL 365
                HN +                                             + L++L
Sbjct: 328 NLYLDHNSIVTLKLS-------------------------------------THHTLKNL 350

Query: 366 VLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            LSHN+        L      +    +   + 
Sbjct: 351 TLSHNDWDCN---SLRALFRNVARPAVDDADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.6 bits (170), Expect = 7e-13
 Identities = 49/305 (16%), Positives = 102/305 (33%), Gaps = 32/305 (10%)

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
           +  + ++++       + +        F +     ++ K++  ++          + +F 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
           Q++ L+L                 +++ + +             +N+  LT L L +N  
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND- 134

Query: 215 RGMIELDV-LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQ 273
             +  L   +  +   L  L +S N L  +   T   T+  L+ + L S  LT     L 
Sbjct: 135 --LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD--LS 189

Query: 274 NQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333
               L   ++S N +               +   + SHN +                +  
Sbjct: 190 LIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINV--------------VRG 228

Query: 334 PPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL 392
           P    +T L   +N+LT    +W+ N   L  + LS+N L  ++          L  L +
Sbjct: 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYI 285

Query: 393 QGNNL 397
             N L
Sbjct: 286 SNNRL 290

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 70/418 (16%), Positives = 131/418 (31%), Gaps = 59/418 (14%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           + +  L+ L  L  + N +     + +    +L  L   +N L++   + +  L+ L  L
Sbjct: 58  TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYL 111

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           +   N+      + +     L  L+ ++N    E+  S  +   L +LD   N    +  
Sbjct: 112 NCDTNKL---TKLDVSQNPLLTYLNCARNT-LTEIDVS--HNTQLTELDCHLNKKITKLD 165

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
                 + L  LD             +     L  L+  +NN +  L   +     L  +
Sbjct: 166 --VTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTNNIT-KL--DLNQNIQLTFL 217

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
           + +    +      +  L+QLT  D + N    + ELDV  ++   L  L      L  +
Sbjct: 218 DCSSNKLT---EIDVTPLTQLTYFDCSVNP---LTELDV--STLSKLTTLHCIQTDLLEI 269

Query: 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQN 303
                 T + +L Y     C   K  +   N   L  +D     I       L       
Sbjct: 270 ----DLTHNTQLIYFQAEGCRKIKELDVTHNT-QLYLLDCQAAGITE-----LDLSQNPK 319

Query: 304 LNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNIL 362
           L     ++  LT               L V     +  L   N  +  +  S +  +  L
Sbjct: 320 LVYLYLNNTELTE--------------LDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 363 ESLVLSHNNLSGLLPQCLGN----FSDELLVLDLQGNNLPLSKGCESGEAPTNEDHTE 416
            +   +      +  + L N     +    +LD  GN + +  G            T 
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 421

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 71/397 (17%), Positives = 132/397 (33%), Gaps = 60/397 (15%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             S   L+ L  LD   + +  ++   +  L  L +L  ++N +++   + +   ++L  
Sbjct: 35  TISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT---LDLSQNTNLTY 89

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L    N+    L ++   L  L  L+   N    +L  S      L  L+ + N  +   
Sbjct: 90  LACDSNK-LTNLDVT--PLTKLTYLNCDTN-KLTKLDVS--QNPLLTYLNCARNTLT--- 140

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
                + + L  LD        K+   +   TQL  L    N  +      +   + L  
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNR 195

Query: 183 INVAKCNFSGQITS-SLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
           +N         IT   L    QLT LD + N    + E+D  +T    L +   S+N L+
Sbjct: 196 LNCDTN----NITKLDLNQNIQLTFLDCSSNK---LTEID--VTPLTQLTYFDCSVNPLT 246

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
            L      +T  KL  +     +L +    L +   L +      R   ++       + 
Sbjct: 247 EL----DVSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDV----THN 296

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLN 360
             L   +     +T               L +     + YL  +N  LT E+   + +  
Sbjct: 297 TQLYLLDCQAAGIT--------------ELDLSQNPKLVYLYLNNTELT-ELD--VSHNT 339

Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            L+SL   + ++       +G     L          
Sbjct: 340 KLKSLSCVNAHIQDF--SSVGKIPA-LNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 7e-15
 Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 29/246 (11%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
              +   ++L  LD S N++     + V     L  L+   N ++    + +     L  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTF 216

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           LD S N+   E+ ++   L  L   D S N    EL  S   L  L  L     +     
Sbjct: 217 LDCSSNK-LTEIDVT--PLTQLTYFDCSVN-PLTELDVS--TLSKLTTLHCIQTDLLE-- 268

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
                + + L       C    ++   + + TQL  L   +   +      +     L  
Sbjct: 269 -IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVY 322

Query: 183 INVAKCNFSGQITS-SLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
           + +       ++T   + + ++L +L       +    +  +      L     +  +  
Sbjct: 323 LYLNNT----ELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI----PALNNNFEAEGQTI 374

Query: 242 VLTKAT 247
            + K T
Sbjct: 375 TMPKET 380

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 46/245 (18%), Positives = 79/245 (32%), Gaps = 13/245 (5%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
                NL  L  L L  N++    P +   L  LE L LS N L     +      +L+E
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQE 125

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL--PTSIRNLFSLEKLDLSFNNFSG 120
           L + +N            L  + V++L  N          + + +  L  + ++  N + 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
             P   G   SL  L L           S+     L  L L  N+ S    G + N   L
Sbjct: 185 TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNS----YRGMIELDVLLTSWKNLEFLGLS 236
             +++       ++   L +   +  + L  N+               T   +   + L 
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 237 LNRLS 241
            N + 
Sbjct: 302 SNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 18/293 (6%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
            L  +  S   L     +          LDL  N+          NL +L  L L  N  
Sbjct: 32  HLRVVQCSDLGLEK---VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
               P +   L  LE+L LS N    E P       +L+ L +                 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELP--EKMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 155 QLQYLHLGSNNFSGDLLGP--IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
           Q+  + LG+N      +       ++ L  I +A  N +  I   L     LT L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272
                ++   L     NL  LGLS N +S +   +   T   L+ + L +  L K P  L
Sbjct: 203 KIT-KVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGL 259

Query: 273 QNQHHLRFMDLSDNRIQ----GKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321
            +  +++ + L +N I             +    + +G +   N +  ++  P
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 53/324 (16%)

Query: 83  SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
            L+V+  S  G   ++P  +        LDL  N  +        N  +L  L L +   
Sbjct: 32  HLRVVQCSDLG-LEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
               P +     +L+ L+L  N        P    ++L+ + V +   +    S    L+
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS 262
           Q+  ++L  N  +     +      K L ++ ++   ++ +           L  + L  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLTELHLDG 201

Query: 263 CNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321
             +TK     L+  ++L  + LS N I   V    L  N  +L   + ++N L       
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLA-NTPHLRELHLNNNKLV------ 253

Query: 322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL-----L 376
                                        ++P  + +   ++ + L +NN+S +      
Sbjct: 254 -----------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 377 PQCLGNFSDELLVLDLQGNNLPLS 400
           P            + L  N +   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYW 308

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +   + KL ++ ++   +     +  G   SL EL L  N ++     S+  L++L +
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS--- 119
           L LS N        S+ N   L+ L L+ N    ++P  + +   ++ + L  NN S   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 120 -GEF--PWSTGNFSSLKLLDLRS--CGFWGKVPHSIGNFTQLQYLHLGSN 164
             +F  P      +S   + L S    +W   P +         + LG+ 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 10/78 (12%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQG------ELPVSVGNLHSLEELDLSANFLSSEWPISI 54
           ++P  L +   +  + L  N +          P       S   + L +N +   W I  
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-WEIQP 312

Query: 55  G---NLSSLKELDLSQNR 69
                +     + L   +
Sbjct: 313 STFRCVYVRAAVQLGNYK 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 3e-20
 Identities = 62/245 (25%), Positives = 95/245 (38%), Gaps = 8/245 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLS--SEWPISIGNLS 58
            +P+ +   S    L+L  N+LQ         L  L +L LS+N LS       S    +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 59  SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNN 117
           SLK LDLS N     +  +   L  L+ LD   +        S+  +L +L  LD+S  +
Sbjct: 79  SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGN 176
               F       SSL++L +    F       I      L +L L              +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236
           L SL+ +N++  NF    T   + L+ L  LD + N      +   L     +L FL L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 237 LNRLS 241
            N  +
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 60/295 (20%), Positives = 103/295 (34%), Gaps = 46/295 (15%)

Query: 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166
           S  ++  +    +   P  TG  SS   L+L S              TQL  L L SN  
Sbjct: 8   SGTEIRCNSKGLT-SVP--TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 167 SGDLLGPI--GNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLL 224
           S             SL+ ++++       ++S+   L QL  LD   ++ + M E  V  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF- 122

Query: 225 TSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF--PNFLQNQHHLRFMD 282
            S +NL +L +S     V      +  S  L+ + +   +  +   P+      +L F+D
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 283 LSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL 342
           LS  +++ ++     + ++ +L   N SHN                             L
Sbjct: 182 LSQCQLE-QLSPTAFN-SLSSLQVLNMSHNNFFSL-----------------DTFPYKCL 222

Query: 343 ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            S                 L+ L  S N++     Q L +F   L  L+L  N+ 
Sbjct: 223 NS-----------------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 86/418 (20%), Positives = 136/418 (32%), Gaps = 45/418 (10%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
            S + +LSKL  L +S N +Q  L +SV      LE LDLS N L     IS     +LK
Sbjct: 38  TSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLK 93

Query: 62  ELDLSQNRFFGELPISM--GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
            LDLS N F   LPI    GN+  LK L LS           I +L   + L +    + 
Sbjct: 94  HLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 120 GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL--------- 170
                            L       K  H I + +     +L  +N    L         
Sbjct: 153 --EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 171 --LGPIGNLRSLEAINVAKCNFSGQITSSLRNL---SQLTALDLAQNSYRGMI---ELDV 222
             L  +     L  + +     +      +  L   + +    ++    +G +   + D 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 223 LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFM 281
             TS K L    +  +          +  S  +                          +
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSN-MNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 282 DLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITY 341
           D S+N +   V +     ++  L       N L    +   +    K         ++  
Sbjct: 330 DFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMK---------SLQQ 378

Query: 342 LA-SNNSLTGEIPSWIC-NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           L  S NS++ +     C     L SL +S N L+  + +CL      + VLDL  N +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.0 bits (205), Expect = 4e-17
 Identities = 75/416 (18%), Positives = 135/416 (32%), Gaps = 43/416 (10%)

Query: 5   SLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKE- 62
           S      L HLDLS N           GN+  L+ L LS   L     + I +L+  K  
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 63  LDLSQNRFFGELPISMGNLG--SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           L L +     E P  + +    SL ++  +   +   L  S++ + +LE  ++       
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 121 EFPWSTGNFSSL------KLLDLRSCGFWGKVPHSIGNF---TQLQYLHLGSNNFSGDLL 171
           +  +     + L        L L +          I      T + Y  + +    G L 
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 172 GPIG-----NLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
                    +L++L    V    F    +      S +   +   +  R M+ +    + 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCP-SK 322

Query: 227 WKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF---LQNQHHLRFMDL 283
                 L  S N L+          ++ L+ + L+   L +             L+ +D+
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 284 SDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG--FDQHPVVLPGNKGPLPVPPPGTITY 341
           S N +     K       ++L   N S N+LT   F   P  +              +  
Sbjct: 382 SQNSVSYDEKKGDCS-WTKSLLSLNMSSNILTDTIFRCLPPRI-------------KVLD 427

Query: 342 LASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           L  +N +   IP  +  L  L+ L ++ N L  +        +  L  + L  N  
Sbjct: 428 L-HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-SLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 72/396 (18%), Positives = 127/396 (32%), Gaps = 38/396 (9%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69
            K   L++S N +       + +L  L  L +S N +             L+ LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTS--IRNLFSLEKLDLSFNNFSGEFPWSTG 127
                 IS     +LK LDLS N  F  LP      N+  L+ L LS  +          
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
           + +  K+L +    +                  L     +      I ++      N+  
Sbjct: 137 HLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 188 CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247
            N    +  +  +        L  N     + L+ + T+W +   +   +   +V   + 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307
           S+   Q              F     +   L    +  +      P+  +     N+N  
Sbjct: 255 SNVKLQGQLD-------FRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIK 305

Query: 308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLA----SNNSLTGEIPSWICNLNILE 363
           NF+ +                  + +  P  I+       SNN LT  +     +L  LE
Sbjct: 306 NFTVS--------------GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 364 SLVLSHNNLSGLLPQCLGNFSD--ELLVLDLQGNNL 397
           +L+L  N L   L +     +    L  LD+  N++
Sbjct: 352 TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 67/344 (19%), Positives = 113/344 (32%), Gaps = 37/344 (10%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
            +S   L  L  L +        +  +    L SL  L L  N        +   L++L+
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 62  ELDLSQNRFFGELPISMG---NLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNN 117
            L L+Q        +S      L SL++L L  N      P S   N+     LDL+FN 
Sbjct: 107 VLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 118 FS----GEFPWSTG------NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
                  +     G        SS+ L D+       +   +    T +  L L  N F 
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLR---------------NLSQLTALDLAQN 212
             +     +  +   I     + S  + SS                   S +   DL+++
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272
                +   V  + + +LE L L+ N ++ +        +  L  + L    L    + +
Sbjct: 286 KIF-ALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRM 342

Query: 273 -QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315
            +N   L  +DLS N I+  +        + NL       N L 
Sbjct: 343 FENLDKLEVLDLSYNHIRA-LGDQSFL-GLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 76/395 (19%), Positives = 118/395 (29%), Gaps = 74/395 (18%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
            +  +DLS N ++     S   L  L+ L + Q      +  +    L SL +L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 94  YFGELPTSI-RNLFSLEKLDLSFNNFS------GEFPWSTGNFSSLKLLDLRSCGFWGKV 146
            F +L T     L +LE L L+  N          F       +SL++L LR        
Sbjct: 91  -FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK----PLTSLEMLVLRDNNIKKIQ 145

Query: 147 PHSI-GNFTQLQYLHLGSNNFS----GDLLGPIG------NLRSLEAINVAKCNFSGQIT 195
           P S   N  +   L L  N        DLL   G       L S+   ++ +     +  
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 196 SSLRNLSQLTALDLAQNSYR-----------GMIELDVLLTSWKNLEFLGLSLNRLSVLT 244
            +    + +T LDL+ N ++              ++  L+ S                  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 245 KATSDT-TSQKLKYIGLRSCNLTKFPN-FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ 302
             T     +  +K   L    +         +   L  + L+ N I  K+        + 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW-GLT 323

Query: 303 NLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNIL 362
           +L   N S N L                           L                   L
Sbjct: 324 HLLKLNLSQNFLGSI-----------------DSRMFENLDK-----------------L 349

Query: 363 ESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           E L LS+N++  L  Q        L  L L  N L
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 6/211 (2%)

Query: 196 SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL 255
           +S   L  L  L + Q +   +I  +       +L  L L  N+   L     +  +  L
Sbjct: 48  TSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDYNQFLQLETGAFNGLA-NL 105

Query: 256 KYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
           + + L  CNL       NF +    L  + L DN I+   P      NM+  +  + + N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFN 164

Query: 313 LLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNL 372
            +    +  ++    K    +          +   L  E          + +L LS N  
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 373 SGLLPQCLGNFSDELLVLDLQGNNLPLSKGC 403
              + +   +      +  L  +N       
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 11/215 (5%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             +  +L  L  L L  N ++ ++ V     L SL  L+L  N+L+     +   LS L+
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 62  ELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFS 119
           EL L  N     +P      + SL  LDL +      +       LF+L+ L+L   N  
Sbjct: 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 120 --GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
                         L+ L++    F    P S    + L+ L + ++  S         L
Sbjct: 210 DMPNLT----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
            SL  +N+A  N S         L  L  L L  N
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 8e-17
 Identities = 56/282 (19%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69
           ++   +  +   L  E+P  +    +   L+L  N +      +  +L  L+ L L +N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGEL----PTSIRNLFSLEKLDLSFNNFSGEFPWS 125
                  +   L SL  L+L  N     L      +   L  L +L L  N       ++
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 126 TGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAIN 184
                SL  LDL        +          L+YL+LG  N     +  +  L  LE + 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELE 224

Query: 185 VAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244
           ++  +F      S   LS L  L +  +    +IE +       +L  L L+ N LS L 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNA-FDGLASLVELNLAHNNLSSLP 282

Query: 245 KATSDTTSQKLKYIGLRS------CNLTKFPNFLQNQHHLRF 280
                     L  + L        C++     +L+       
Sbjct: 283 HDLFTPLR-YLVELHLHHNPWNCDCDILWLAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 56/318 (17%), Positives = 93/318 (29%), Gaps = 71/318 (22%)

Query: 82  GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG 141
                +  ++ G   E+P  I +  +   L+L  NN       +  +   L++L L    
Sbjct: 54  NQFSKVVCTRRG-LSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 142 FWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL 201
                  +      L  L L  N            L  + +              +   L
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNW-----------LTVIPS-------------GAFEYL 146

Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS-LNRLSVLTKAT-SDTTSQKLKYIG 259
           S+L  L L  N     I          +L  L L  L +L  +++       +  LKY+ 
Sbjct: 147 SKLRELWLRNNPIE-SIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN--LKYLN 202

Query: 260 LRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQ 319
           L  CN+   PN       L  +++S N    ++        + +L      ++ ++    
Sbjct: 203 LGMCNIKDMPNL-TPLVGLEELEMSGNHFP-EIRPGSFH-GLSSLKKLWVMNSQVSLI-- 257

Query: 320 HPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 379
                                 LAS                 L  L L+HNNLS L    
Sbjct: 258 ---------------ERNAFDGLAS-----------------LVELNLAHNNLSSLPHDL 285

Query: 380 LGNFSDELLVLDLQGNNL 397
                  L+ L L  N  
Sbjct: 286 FTPLR-YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +   L  L +L+L +  ++ ++P ++  L  LEEL++S N      P S   LSSLK+
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNF 118
           L +  ++       +   L SL  L+L+ N     LP  +   L  L +L L  N +
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 61/285 (21%), Positives = 95/285 (33%), Gaps = 44/285 (15%)

Query: 14  HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
            LDL  N++          L  L  L L  N +S     +   L  L++L +S+N     
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE- 116

Query: 74  LPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK 133
             I      SL  L +  N            L ++  +++  N       +  G F  LK
Sbjct: 117 --IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLK 173

Query: 134 L--LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS 191
           L  L +        +P        L  LHL  N            ++++E          
Sbjct: 174 LNYLRISEAKL-TGIPK--DLPETLNELHLDHN-----------KIQAIEL--------- 210

Query: 192 GQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT 251
                 L   S+L  L L  N  R MIE    L+    L  L L  N+LS +     D  
Sbjct: 211 ----EDLLRYSKLYRLGLGHNQIR-MIENGS-LSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 252 SQKLKYIGLRSCNLTKFPN-------FLQNQHHLRFMDLSDNRIQ 289
              L+ + L + N+TK          F   + +   + L +N + 
Sbjct: 265 L--LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 47/317 (14%), Positives = 91/317 (28%), Gaps = 51/317 (16%)

Query: 83  SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
            L+V+  S  G    +P  I        LDL  N+ S            L  L L +   
Sbjct: 34  HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
                 +     +LQ L++  N+       P     SL  + +               L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 203 QLTALDLAQNSYR-GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR 261
            +  +++  N       E          L +L +S  +L+ +         + L  + L 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAF--DGLKLNYLRISEAKLTGI----PKDLPETLNELHLD 201

Query: 262 SCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH 320
              +       L     L  + L  N+I+  +    L   +  L   +  +N L+     
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS-FLPTLRELHLDNNKLS----- 254

Query: 321 PVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 380
                                          +P+ + +L +L+ + L  NN++ +     
Sbjct: 255 ------------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 381 GNFSDELLVLDLQGNNL 397
                 +      G +L
Sbjct: 285 CPVGFGVKRAYYNGISL 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 2e-18
 Identities = 53/322 (16%), Positives = 101/322 (31%), Gaps = 38/322 (11%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             S+     K      + NE    L      ++   EL L+   LSS  P ++     + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKEC--LINQFSELQLNRLNLSS-LPDNLP--PQIT 83

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L+++QN     LP       SL+ LD   N     LP    +   L+ LD+  N  +  
Sbjct: 84  VLEITQNA-LISLPEL---PASLEYLDACDNR-LSTLPELPAS---LKHLDVDNNQLT-M 134

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
            P        L+ ++  +      +P    +   L+ L + +N  +  L     +L +L+
Sbjct: 135 LPELPAL---LEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPESLEALD 186

Query: 182 AINVAKCNFSGQITSSLRNLSQLT----ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL 237
                  N    + +                  +N       +   + S      + L  
Sbjct: 187 VST----NLLESLPAVPVRNHHSEETEIFFRCRENRIT---HIPENILSLDPTCTIILED 239

Query: 238 NRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMD----LSDNRIQGKVP 293
           N LS   + +    + +  Y G R    +         H            +N+      
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPR-IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 294 KWLLDPNMQNLNGFNFSHNLLT 315
            W    + ++ N F+   + L+
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 4e-14
 Identities = 54/329 (16%), Positives = 100/329 (30%), Gaps = 66/329 (20%)

Query: 74  LPISMGNLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSS 131
           + + + N  SL          G + +  ++            + N             + 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQ 60

Query: 132 LKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS 191
              L L        +P ++    Q+  L +  N                           
Sbjct: 61  FSELQLNRLNL-SSLPDNLP--PQITVLEITQN--------------------------- 90

Query: 192 GQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT 251
             + S     + L  LD   N       L  L     +L+ L +  N+L++L +  +   
Sbjct: 91  -ALISLPELPASLEYLDACDN------RLSTLPELPASLKHLDVDNNQLTMLPELPA--- 140

Query: 252 SQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSH 311
              L+YI   +  LT  P    +   L  + + +N++        L    ++L   + S 
Sbjct: 141 --LLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTF------LPELPESLEALDVST 189

Query: 312 NLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNN 371
           NLL         LP             I +    N +T  IP  I +L+   +++L  N 
Sbjct: 190 NLLES-------LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 372 LSGLLPQCLGNFSDELLVLDLQGNNLPLS 400
           LS  + + L   +      D  G  +  S
Sbjct: 242 LSSRIRESLSQQT---AQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 44/240 (18%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P    +L  L    +  N+L   LP       SLE LD+S N L S  P         
Sbjct: 154 MLPELPTSLEVL---SVRNNQLT-FLPEL---PESLEALDVSTNLLES-LPAVPVRNHHS 205

Query: 61  KE----LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116
           +E        +NR    +P ++ +L     + L  N           +  + +       
Sbjct: 206 EETEIFFRCRENR-ITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHG-P 262

Query: 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL--LGPI 174
                      N     L D  +  F       +            +N FS  L  L   
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDT 322

Query: 175 GNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIEL---DVLLTSWKNLE 231
            + R+          F  Q+ + L  LS    L     +          D +  +W NL 
Sbjct: 323 VSARNTSG-------FREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLR 375

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 12/218 (5%)

Query: 2   IPSSLGNLSKL----LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNL 57
           +P+            +      N +   +P ++ +L     + L  N LSS    S+   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           ++  +    +  F   +     N     + D     +     + +  ++   + +   N 
Sbjct: 254 TAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANT 311

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
           FS      +   S+      R      +V   +   +    L   S   + D      + 
Sbjct: 312 FSAFLDRLSDTVSARNTSGFRE-----QVAAWLEKLSASAELRQQSFAVAADATESCEDR 366

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215
            +L   N+ K     Q +  L +      L L +  +R
Sbjct: 367 VALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFR 404

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 9/240 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P  +   +    L+L  N++Q     S  +L  LE L LS N + +    +   L++L
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFS 119
             L+L  NR       +   L  LK L L  N     +P+     + SL +LDL      
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 120 GEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
                      S+L+ L+L  C    +   ++    +L  L L  N+ S    G    L 
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN 238
            L+ + + +        ++  NL  L  ++LA N+   ++  D+  T   +LE + L  N
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL-FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 56/317 (17%), Positives = 88/317 (27%), Gaps = 69/317 (21%)

Query: 82  GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG 141
                +   +     E+P  I    +   L+L  N        S  +   L++L L    
Sbjct: 43  NQFSKVICVRKN-LREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 142 FWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL 201
                  +      L  L L  N            L ++                +   L
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNR-----------LTTIPN-------------GAFVYL 135

Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS-LNRLSVLTKATSDTTSQKLKYIGL 260
           S+L  L L  N     I          +L  L L  L RLS +++   +  S  L+Y+ L
Sbjct: 136 SKLKELWLRNNPIE-SIPSY-AFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNL 192

Query: 261 RSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH 320
             CNL + PN       L  +DLS N +   +        + +L       + +      
Sbjct: 193 AMCNLREIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQ-GLMHLQKLWMIQSQIQVI--- 246

Query: 321 PVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 380
                                                NL  L  + L+HNNL+ L     
Sbjct: 247 --------------ERNAFD-----------------NLQSLVEINLAHNNLTLLPHDLF 275

Query: 381 GNFSDELLVLDLQGNNL 397
                 L  + L  N  
Sbjct: 276 TPLH-HLERIHLHHNPW 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 2e-17
 Identities = 55/354 (15%), Positives = 123/354 (34%), Gaps = 54/354 (15%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
                 ++ +  +L    +   +  +   L+S++++  + + + S   I    L ++ +L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 70

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
            L+ N+     P++  NL +L  L L +N    +L +S+++L  L+ L L  N  S    
Sbjct: 71  FLNGNKLTDIKPLT--NLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS---- 122

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
               + + L                   +  QL+ L+LG+N  +   +  +  L  L+ +
Sbjct: 123 ----DINGLV------------------HLPQLESLYLGNNKITD--ITVLSRLTKLDTL 158

Query: 184 NVAKCNFSGQIT--SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
           ++       QI+    L  L++L  L L++N    +  L  L    KNL+ L L      
Sbjct: 159 SLEDN----QISDIVPLAGLTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECL 210

Query: 242 --VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP 299
              +   ++      +K            P  + +       ++  +  +       +  
Sbjct: 211 NKPINHQSNLVVPNTVKNT----DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266

Query: 300 NMQNLNG--FNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE 351
               +      F   +     +   V     G +        T + +    T +
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQ 320

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 5e-11
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 12/253 (4%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           SSL +L KL  L L  N +  ++   + +L  LE L L  N ++      +  L+ L  L
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 158

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
            L  N+    +P++   L  L+ L LS+N    +L  ++  L +L+ L+L       +  
Sbjct: 159 SLEDNQISDIVPLA--GLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPI 214

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
               N      +           P  I +    +  ++   +                 I
Sbjct: 215 NHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNV-KWHLPEFTNEVSFIFYQPVTI 271

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
             AK  F G++T  L+ +  ++  D+     +  +E    +T+ K     G         
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSY-DVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTE 330

Query: 244 TKATSDTTSQKLK 256
                +       
Sbjct: 331 KNGGHEWNFNTDY 343

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 7e-10
 Identities = 47/248 (18%), Positives = 81/248 (32%), Gaps = 59/248 (23%)

Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
            F +    +L   + +         L S++ I     +        ++ L  +T L L  
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 74

Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
           N    +  L  L    KNL +L L  N++  L+   S    +KLK + L    ++     
Sbjct: 75  NKLTDIKPLTNL----KNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING- 126

Query: 272 LQNQHHLRFMDLSDNRIQGKVPKWLLDP--NMQNLNGFNFSHNLLTGFDQHPVVLPGNKG 329
           L +   L  + L +N+I        +     +  L+  +   N ++              
Sbjct: 127 LVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQIS-------------- 166

Query: 330 PLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLV 389
                    I  LA               L  L++L LS N++S L    L      L V
Sbjct: 167 --------DIVPLA--------------GLTKLQNLYLSKNHISDLRA--LAGLK-NLDV 201

Query: 390 LDLQGNNL 397
           L+L     
Sbjct: 202 LELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 57/229 (24%)

Query: 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNL 230
           + P          N+ K + +     +   L+ +  +    +  + +  +  L     N+
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL----PNV 67

Query: 231 EFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG 290
             L L+ N+L+ +      T  + L ++ L    +    + L++   L+ + L  N I  
Sbjct: 68  TKLFLNGNKLTDIK---PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGIS- 122

Query: 291 KVPKWLLDP--NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL 348
                 ++   ++  L      +N +T                       IT L+     
Sbjct: 123 -----DINGLVHLPQLESLYLGNNKIT----------------------DITVLS----- 150

Query: 349 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
                     L  L++L L  N +S ++P  L   + +L  L L  N++
Sbjct: 151 ---------RLTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 204 LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC 263
           +          + +   D             L    ++             +  I   + 
Sbjct: 1   MGETITVSTPIKQIFPDDAF----AETIKDNLKKKSVTDAVTQNELN---SIDQIIANNS 53

Query: 264 NLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVV 323
           ++      +Q   ++  + L+ N++    P      N++NL       N +         
Sbjct: 54  DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS----- 103

Query: 324 LPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 382
              +   L       +  L   +N ++ +I   + +L  LESL L +N ++ +    L  
Sbjct: 104 ---SLKDLK-----KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSR 151

Query: 383 FSDELLVLDLQGNNL 397
            + +L  L L+ N +
Sbjct: 152 LT-KLDTLSLEDNQI 165

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 9e-17
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 22/239 (9%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKE 62
                L+  + +    + +     V+  +L  +  L      +++   I  +  L++L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIG 67

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           L+L  N+     P+   NL  +  L+LS N    +  ++I  L S++ LDL+    +   
Sbjct: 68  LELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
           P +    S+L++L L            +   T LQYL +G+   S   L P+ NL  L  
Sbjct: 124 PLA--GLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTT 177

Query: 183 INVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
           +       S    S L +L  L  + L  N    +  L        NL  + L+   ++
Sbjct: 178 LKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANT----SNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 39/249 (15%)

Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
                  +  G +N +        +L  +  ++      +      ++ L+ L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
           N    +  L  L      +  L LS N L  ++   +    Q +K + L S  +T     
Sbjct: 73  NQITDLAPLKNL----TKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP- 124

Query: 272 LQNQHHLRFMDLSDNRIQGKVPKWLLDP--NMQNLNGFNFSHNLLTGFDQHPVVLPGNKG 329
           L    +L+ + L  N+I        + P   + NL   +  +  ++              
Sbjct: 125 LAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSDLT----------- 167

Query: 330 PLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELL 388
             P+     +T L A +N ++ +I   + +L  L  + L +N +S + P  L N S  L 
Sbjct: 168 --PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTS-NLF 220

Query: 389 VLDLQGNNL 397
           ++ L    +
Sbjct: 221 IVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           + L NLSKL  L    N++    P++  +L +L E+ L  N +S   P++  N S+L  +
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSPLA--NTSNLFIV 222

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
            L+      +      NL    V+           P +I +  +    +L++N 
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNL 274

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 55/304 (18%), Positives = 84/304 (27%), Gaps = 42/304 (13%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE---WPISIGNL 57
            +    G  S    L     E        +    SL+ L + A  + S      + +  +
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           S L+EL L      G  P  +                             L  L+L   +
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGP----------------------DLNILNLRNVS 132

Query: 118 FSGEFPWSTGNFS----SLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL--- 170
           ++    W           LK+L +            +  F  L  L L  N   G+    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 171 ----LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
                     L+ L   N      SG  ++      QL  LDL+ NS R           
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 227 WKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDN 286
              L  L LS   L  + K        KL  + L    L + P+  +    +  + L  N
Sbjct: 253 -SQLNSLNLSFTGLKQVPKG----LPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKGN 306

Query: 287 RIQG 290
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 40/256 (15%), Positives = 70/256 (27%), Gaps = 40/256 (15%)

Query: 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSS---LRNLSQLTAL 207
           G  +    L              I    SL+ + V       +I      +  +S L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 208 DLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTS---QKLKYIGLRSCN 264
            L      G     +L  +  +L  L L     +      ++        LK + +   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 265 LTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKW--LLDPNMQNLNGFNFSHNLLTGFDQHP 321
              F    ++    L  +DLSDN   G+      L       L      +  +       
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------- 213

Query: 322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 381
                                    + +G   +       L+ L LSHN+L         
Sbjct: 214 ------------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 382 NFSDELLVLDLQGNNL 397
           ++  +L  L+L    L
Sbjct: 250 DWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 50/314 (15%)

Query: 73  ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS---TGNF 129
           ++ +  G      +L            T I    SL++L +          +        
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 130 SSLKLLDLRSCGFWGKVPHSIGNFT--QLQYLHLGSNNFSG--DLLGPIGNL--RSLEAI 183
           S L+ L L +    G  P  +   T   L  L+L + +++     L  +       L+ +
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD--VLLTSWKNLEFLGLSLNRLS 241
           ++A+ +        +R    L+ LDL+ N   G   L   +    +  L+ L L    + 
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
             +                              +  L+ +DLS N ++            
Sbjct: 215 TPSG---------------------VCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWP 252

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLN 360
             LN  N S   L                +P   P  ++ L  S N L    PS    L 
Sbjct: 253 SQLNSLNLSFTGLKQ--------------VPKGLPAKLSVLDLSYNRLD-RNPS-PDELP 296

Query: 361 ILESLVLSHNNLSG 374
            + +L L  N    
Sbjct: 297 QVGNLSLKGNPFLD 310

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 10/185 (5%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
                L+  L  +       ++   ++SL  + L+   ++    I      ++K+L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINN 75

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
                  PIS   L +L+ L +       +   ++  L SL  LD+S +           
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
               +  +DL   G    +   +    +L+ L++  +         I +   L  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190

Query: 188 CNFSG 192
               G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 29/165 (17%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           + +     +  L ++        P+S   L +LE L +    ++S+   ++  L+SL  L
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           D+S +     +   +  L  +  +DLS NG   ++   ++ L  L+ L++ F+       
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH---- 172

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168
               ++  ++                  +F +L  L+  S    G
Sbjct: 173 ----DYRGIE------------------DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           + +  LS L  L +   ++  +   ++  L SL  LD+S +         I  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
           DLS N    ++   +  L  LK L++  +G   +    I +   L +L        G+
Sbjct: 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 31/205 (15%), Positives = 75/205 (36%), Gaps = 36/205 (17%)

Query: 37  EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFG 96
           E+  L A+  +   P S     +     L Q+       I+   + SL  + L+      
Sbjct: 4   EQTGLKASQDNVNIPDS--TFKAYLNGLLGQSST---ANITEAQMNSLTYITLANIN-VT 57

Query: 97  ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156
           +L T I    +++ L ++  + +        N++ +                     + L
Sbjct: 58  DL-TGIEYAHNIKDLTINNIHAT--------NYNPIS------------------GLSNL 90

Query: 157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG 216
           + L +   + + D +  +  L SL  ++++       I + +  L ++ ++DL+ N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-- 148

Query: 217 MIELDVLLTSWKNLEFLGLSLNRLS 241
            I   + L +   L+ L +  + + 
Sbjct: 149 -ITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
             +L  L+ L  LD+S +     +   +  L  +  +DLS N   ++  + +  L  LK 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKS 163

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQN 92
           L++  +       I   +   L  L     
Sbjct: 164 LNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            I + +  L K+  +DLS N    ++   +  L  L+ L++  + +     I   +   L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE--DFPKL 183

Query: 61  KELDLSQNR 69
            +L      
Sbjct: 184 NQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/205 (11%), Positives = 65/205 (31%), Gaps = 28/205 (13%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P    ++     + + + +  IT +   ++ LT + LA  +   +  ++       N++ 
Sbjct: 18  PDSTFKAYLNGLLGQ-SSTANITEA--QMNSLTYITLANINVTDLTGIEYA----HNIKD 70

Query: 233 LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGK 291
           L ++    +     +  +    L+ + +   ++T      L     L  +D+S +     
Sbjct: 71  LTINNIHATNYNPISGLS---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 292 VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTG 350
           +   +    +  +N  + S+N         + L              +  L    + +  
Sbjct: 128 ILTKIN--TLPKVNSIDLSYNGAI---TDIMPLKTLP---------ELKSLNIQFDGVHD 173

Query: 351 EIPSWICNLNILESLVLSHNNLSGL 375
                I +   L  L      + G 
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGGK 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 67/297 (22%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIG---NLS 58
            S L     L  L L+ N +   +      +L SLE LDLS N+LS+   +S      LS
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN---LSSSWFKPLS 124

Query: 59  SLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFN 116
           SL  L+L  N +      S+  +L  L++L +     F ++       L  LE+L++  +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGN 176
           +      +   +  S+                       + +L L               
Sbjct: 185 DLQS---YEPKSLKSI---------------------QNVSHLILHMK-----------Q 209

Query: 177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDV------LLTSWKNL 230
              L  I              +   S +  L+L           ++       L      
Sbjct: 210 HILLLEI-------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 231 EFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDN 286
             + ++   L  + K  +  +   L  +      L   P         L+ + L  N
Sbjct: 257 RNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
           S   +L+KL  L +   +   ++       L  LEEL++ A+ L S  P S+ ++ ++  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI--------RNLFSLEKLDLS 114
           L L   +    L I +    S++ L+L          + +           F+   + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNF 166
             +   +        S L  L+         VP  I    T LQ + L +N +
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 34/293 (11%)

Query: 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166
           +++ LDLS N  +           +L+ L L S G       S  +   L++L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
                     L +L +             S  + LS LT L+L  N Y+  +    L + 
Sbjct: 112 ----------LSNLSS-------------SWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 227 WKNLEFLGLSLN-RLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLS 284
              L+ L +      + + +      +  L+ + + + +L  +    L++  ++  + L 
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 285 DNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLAS 344
             +    + +  +D    ++         L  F     +  G    L          + +
Sbjct: 207 MKQHI-LLLEIFVD-VTSSVECLELRDTDLDTF-HFSELSTGETNSLIKKFTFRNVKI-T 262

Query: 345 NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           + SL  ++   +  ++ L  L  S N L  +        +  L  + L  N  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 45/272 (16%)

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFN 116
            ++K LDLS NR        +    +L+ L L+ NG    +      +L SLE LDLS+N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN 110

Query: 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGN 176
             S     S+  F  L                     + L +L+L  N +    LG    
Sbjct: 111 YLSN---LSSSWFKPL---------------------SSLTFLNLLGNPYKT--LGETSL 144

Query: 177 LRSLEAINVAKCNFSGQITS----SLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
              L  + + +       T         L+ L  L++  +  +   E    L S +N+  
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKS-LKSIQNVSH 202

Query: 233 LGLSLNRLSVLTKATSDTTSQ----KLKYIGLRSCNLTKFP----NFLQNQHHLRFMDLS 284
           L L + +  +L +   D TS     +L+   L + + ++      N L  +   R + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 285 DNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG 316
           D  +   +        +  L    FS N L  
Sbjct: 263 DESLFQVMKLLNQISGLLEL---EFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISI-------- 54
           P SL ++  + HL L + +    L + V    S+E L+L    L +     +        
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 55  GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDL 113
               + + + ++    F ++   +  +  L  L+ S+N     +P  I   L SL+K+ L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308

Query: 114 SFNNF 118
             N +
Sbjct: 309 HTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 50/261 (19%)

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
           +P  +     ++ L L +N  +      +    +L+A+ +     +     S  +L  L 
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 206 ALDLAQNSYRGMIELDVLLTSW----KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR 261
            LDL+ N       L  L +SW     +L FL L  N    L + +  +   KL+ + + 
Sbjct: 104 HLDLSYN------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 262 SCNLTKF--PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQ 319
           + +               L  +++  + +Q       L  ++QN++              
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLK-SIQNVSHLILHMKQHILL-- 213

Query: 320 HPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 379
                              +   +S                 +E L L   +L       
Sbjct: 214 ---------------LEIFVDVTSS-----------------VECLELRDTDLDTFHFSE 241

Query: 380 LGNFSDELLVLDLQGNNLPLS 400
           L       L+      N+ ++
Sbjct: 242 LSTGETNSLIKKFTFRNVKIT 262

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 65/329 (19%), Positives = 113/329 (34%), Gaps = 60/329 (18%)

Query: 6   LGNLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANFLSSEWPISIG----NL 57
           +   S +    L L+ +  E    +   +    S++E+ LS N + +E    +     + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 58  SSLKELDLSQN---RFFGELPISMGNLG-------SLKVLDLSQNGYFGE-----LPTSI 102
             L+  + S     R   E+P ++  L         L  + LS N  FG      L   +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFL 118

Query: 103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLD-LRSCGFWGKVPHSIGNFTQLQYLHL 161
                LE L L  N          G  +  K+   L+      K  ++      L+ +  
Sbjct: 119 SKHTPLEHLYLHNNGL--------GPQAGAKIARALQELAVNKKAKNA----PPLRSIIC 166

Query: 162 GSNNF---SGDLLGP-IGNLRSLEAINVAKCNFSGQ-----ITSSLRNLSQLTALDLAQN 212
           G N     S         + R L  + + +     +     +   L    +L  LDL  N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 213 --SYRGMIELDVLLTSWKNLEFLGLSLNRLS-----VLTKATSDTTSQKLKYIGLRSCNL 265
             ++ G   L + L SW NL  LGL+   LS      +  A S   +  L+ + L+   +
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 266 TK-----FPNFLQ-NQHHLRFMDLSDNRI 288
                      +      L F++L+ NR 
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 43/283 (15%), Positives = 77/283 (27%), Gaps = 63/283 (22%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANFLSSE-------- 49
           +  +L    KL  + LS N         L   +     LE L L  N L  +        
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 50  -----WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE--- 97
                      N   L+ +   +NR           +  +   L  + + QNG   E   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 98  --LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ 155
             L   +     L+ LDL  N F+                              + ++  
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHL-----------------GSSALAIA---LKSWPN 245

Query: 156 LQYLHLGSNNFS-------GDLLGPIGNLRSLEAINVAKCNFSGQ----ITSSLR-NLSQ 203
           L+ L L     S        D    + N   L+ + +            + + +   +  
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 204 LTALDLAQNSY----RGMIELDVLLTSWKNLEFLGLSLNRLSV 242
           L  L+L  N +      + E+  + ++    E   L       
Sbjct: 305 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELT 347

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 89/412 (21%), Positives = 141/412 (34%), Gaps = 55/412 (13%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
              +  LS+L  L LS N ++  L   V      LE LD+S N L +   IS   ++SL+
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLR 124

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF-SG 120
            LDLS N F                  L     FG       NL  L  L LS   F   
Sbjct: 125 HLDLSFNDF----------------DVLPVCKEFG-------NLTKLTFLGLSAAKFRQL 161

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSI--GNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
           +         S  LLDL S    G    S+   N T L  +   ++ FS  +   +  L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 179 SLE----AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW----KNL 230
            L+     +N   C       S L     L  + L          + +    W    + L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 231 EFLGLSLNRLSVLTKATSDTTSQK-LKYIGLRSCNLTKFPNFLQNQH-HLRFMDLSDNRI 288
               L++       + T   T+ K L    +++         L +    +    LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 289 QGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL 348
                  +  P+  +    NF+ N+ T        +      L        T +   N L
Sbjct: 342 P--FIHMVCPPSPSSFTFLNFTQNVFT------DSVFQGCSTLK----RLQTLILQRNGL 389

Query: 349 T--GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLP 398
               ++     N++ LE+L +S N+L+         +++ +LVL+L  N L 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 77/387 (19%), Positives = 133/387 (34%), Gaps = 46/387 (11%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
             + L LS N +S      I  LS L+ L LS NR    L   +      L+ LD+S N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN- 110

Query: 94  YFGELPTSIRNLFSLEKLDLSFNNF-----SGEFPWSTGNFSSLKLLDLRSCGFWGKVPH 148
               +      + SL  LDLSFN+F       EF    GN + L  L L +  F  ++  
Sbjct: 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEF----GNLTKLTFLGLSAAKF-RQLDL 163

Query: 149 SIGNFTQLQYLHLGSNNFSGDLLGP----IGNLRSLEAINVAKCNFSGQITSSLRNLSQL 204
                  L  + L   ++           I N   L  +      FS Q+  S+  L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTS----QKLKYIGL 260
              ++  N       +  L    +    L ++L  +    K +         + ++Y+ +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 261 RSCNLTKFPNFLQNQHH------LRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL 314
            +  +T+  +  +  +       L    + +        + L       +N    S +  
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYS-VFAEMNIKMLSISDT 341

Query: 315 TGFDQHPVVLPGNKGPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLS 373
                  +V P +        P + T+L  + N  T  +      L  L++L+L  N L 
Sbjct: 342 PFI---HMVCPPS--------PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 374 GLLPQCLGNFSD--ELLVLDLQGNNLP 398
               +      +   L  LD+  N+L 
Sbjct: 391 N-FFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 9   LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN 68
            +++    LS+++      V   +  S   L+ + N  +         L  L+ L L +N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 69  RF--FGELPISMGNLGSLKVLDLSQNGY-FGELPTSIRNLFSLEKLDLSFNNF-SGEFPW 124
               F ++ +   N+ SL+ LD+S N         +     S+  L+LS N      F  
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 125 STGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAIN 184
                  +K+LDL +      +P  + +   LQ L++ SN       G    L SL+ I 
Sbjct: 448 LPPK---VKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 36/289 (12%)

Query: 11  KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-----ISIGNLSSLKELDL 65
           +L ++ L+    Q  +            L+++   + + W              ++ L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 66  SQNRFFG-----ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
                       E   S   L SL +  +    +             +    LS ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
                  + SS   L+     F   V        +LQ L L  N            L++ 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-----------GLKNF 392

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
                       ++    +N+S L  LD++ NS       D      +++  L LS N  
Sbjct: 393 F-----------KVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAESILVLNLSSNM- 439

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ 289
             LT +       K+K + L +  +   P  + +   L+ ++++ N+++
Sbjct: 440 --LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 9e-10
 Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 17/292 (5%)

Query: 13  LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRF-- 70
           + LDL    ++G    S+   +    L L  +  S        ++++L  L LS  +   
Sbjct: 174 ILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 71  -----FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLF---SLEKLDLSFNNFSG-- 120
                       +    +L  + L       +    +   F    +E L++     +   
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 121 ---EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
              EF +S     SL +  +++  F          F ++    L  ++     +    + 
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL 237
            S   +N  +  F+  +      L +L  L L +N  +   ++ ++  +  +LE L +SL
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412

Query: 238 NRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ 289
           N L+      +   ++ +  + L S  LT    F      ++ +DL +NRI 
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 7   GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS--IGNLSSLKELD 64
            + S    L+ + N     +      L  L+ L L  N L + + ++    N+SSL+ LD
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 65  LSQNRF-FGELPISMGNLGSLKVLDLSQN----GYFGELPTSIRNLFSLEKLDLSFNNFS 119
           +S N         +     S+ VL+LS N      F  LP        ++ LDL  N   
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK------VKVLDLHNNRIM 463

Query: 120 GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNF 166
              P    +  +L+ L++ S      VP  +    T LQY+ L  N +
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSS 59
           ++     N+S L  LD+SLN L       +     S+  L+LS+N L+      +     
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451

Query: 60  LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNF 118
           +K LDL  NR    +P  + +L +L+ L+++ N     +P  +   L SL+ + L  N +
Sbjct: 452 VKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 50/215 (23%), Positives = 76/215 (35%), Gaps = 7/215 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P  +   +    + L  N +      S     +L  L L +N L+     +   L+ L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 61  KELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNF 118
           ++LDLS N     +  +    LG L  L L + G   EL   + R L +L+ L L  N  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL 141

Query: 119 SGEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
               P  T  +  +L  L L           +      L  L L  N  +        +L
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
             L  + +   N S   T +L  L  L  L L  N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 53/254 (20%), Positives = 81/254 (31%), Gaps = 53/254 (20%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
           + + + L  N +S     S     +L  L L  N        +   L  L+ LDLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 95  FGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF 153
              +  +    L  L  L L       E     G F  L                     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELG--PGLFRGL--------------------- 128

Query: 154 TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213
             LQYL+L  N            L++L                + R+L  LT L L  N 
Sbjct: 129 AALQYLYLQDN-----------ALQALPD-------------DTFRDLGNLTHLFLHGNR 164

Query: 214 YRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFL 272
               +          +L+ L L  NR++ +          +L  + L + NL+  P   L
Sbjct: 165 IS-SVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEAL 221

Query: 273 QNQHHLRFMDLSDN 286
                L+++ L+DN
Sbjct: 222 APLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 42/253 (16%)

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
           VP  I      Q + L  N  S          R+L  + +     +    ++   L+ L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
            LDL+ N+    ++          L  L L    L  L        +  L+Y+ L+   L
Sbjct: 84  QLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNAL 141

Query: 266 TKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL 324
              P +  ++  +L  + L  NRI   VP+      + +L+      N +          
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR-GLHSLDRLLLHQNRVAHV------- 192

Query: 325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
                      P                     +L  L +L L  NNLS L  + L    
Sbjct: 193 ----------HPHAFR-----------------DLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 385 DELLVLDLQGNNL 397
             L  L L  N  
Sbjct: 226 -ALQYLRLNDNPW 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 20/211 (9%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
            S    ++ +  +L    +   +  +   L+S++++  + + + S   I    L ++ +L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
            L+ N+     P++  NL +L  L L +N    +L +S+++L  L+ L L  N  S    
Sbjct: 74  FLNGNKLTDIKPLA--NLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDING 129

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
               +   L+ L L +          +   T+L  L L  N  S   + P+  L  L+ +
Sbjct: 130 LV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNL 183

Query: 184 NVAKCNFSGQIT--SSLRNLSQLTALDLAQN 212
            ++K      I+   +L  L  L  L+L   
Sbjct: 184 YLSKN----HISDLRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           SSL +L KL  L L  N +  ++   + +L  LE L L  N ++      +  L+ L  L
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 161

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
            L  N+    +P++   L  L+ L LS+N        ++  L +L+ L+L       +  
Sbjct: 162 SLEDNQISDIVPLA--GLTKLQNLYLSKNH--ISDLRALAGLKNLDVLELFSQECLNKPI 217

Query: 124 WSTGNFSSLKLLDL 137
               N      +  
Sbjct: 218 NHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 44/254 (17%), Positives = 84/254 (33%), Gaps = 40/254 (15%)

Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITS--SLRNLSQLTALDL 209
            F +    +L   + +         L S++ I          I S   ++ L  +T L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
             N    +  L  L    KNL +L L  N++  L+   S    +KLK + L    ++   
Sbjct: 76  NGNKLTDIKPLANL----KNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDIN 128

Query: 270 NFLQNQHHLRFMDLSDNRIQGKVPKWLLDP--NMQNLNGFNFSHNLLTGFDQHPVVLPGN 327
             L +   L  + L +N+I        +     +  L+  +   N ++            
Sbjct: 129 G-LVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISDIV--------- 172

Query: 328 KGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDE 386
               P+     +  L  S N ++ ++ + +  L  L+ L L              N    
Sbjct: 173 ----PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 387 LLVLDLQGNNLPLS 400
             V +  G+ +   
Sbjct: 227 NTVKNTDGSLVTPE 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 49/223 (21%)

Query: 196 SSLRNLSQLTALDLAQNSYRGMIELDVL------------------LTSWKNLEFLGLSL 237
            S    ++    +L + S    +  + L                  +    N+  L L+ 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77

Query: 238 NRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLL 297
           N+L+ +         + L ++ L    +    + L++   L+ + L  N I        +
Sbjct: 78  NKLTDI---KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS------DI 127

Query: 298 DP--NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPS 354
           +   ++  L      +N +T       VL              +  L   +N ++ +I  
Sbjct: 128 NGLVHLPQLESLYLGNNKITDIT----VLSRLT---------KLDTLSLEDNQIS-DIVP 173

Query: 355 WICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            +  L  L++L LS N++S L    L      L VL+L     
Sbjct: 174 -LAGLTKLQNLYLSKNHISDLRA--LAGLK-NLDVLELFSQEC 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 47/197 (23%), Positives = 73/197 (37%), Gaps = 26/197 (13%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             S  +  +L  LDLS  E+Q  +      +L  L  L L+ N + S    +   LSSL+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQN--------GYFGELPTSIRNLFSLEKLDL 113
           +L   +          +G+L +LK L+++ N         YF        NL +LE LDL
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------SNLTNLEHLDL 156

Query: 114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFW------GKVPHSIGNFTQLQYLHLGSNNFS 167
           S N           +   L  + L +            +        +L+ L L +N   
Sbjct: 157 SSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213

Query: 168 GDLLGPIGNLRSLEAIN 184
               G    L SL+ I 
Sbjct: 214 SVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 59/258 (22%), Positives = 87/258 (33%), Gaps = 58/258 (22%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
           S + LDLS N L      S  +   L+ LDLS+      +      +L  L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN- 86

Query: 94  YFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGN 152
               L       L SL+KL                N +SL+                IG+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVET-----------NLASLE-------------NFPIGH 122

Query: 153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
              L+ L++  N            ++S +        FS        NL+ L  LDL+ N
Sbjct: 123 LKTLKELNVAHN-----------LIQSFKLPEY----FS--------NLTNLEHLDLSSN 159

Query: 213 SYRGMIELDVL--LTSWKNLEF-LGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
             +  I    L  L     L   L LSLN ++ +          +LK + L +  L   P
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQLKSVP 216

Query: 270 -NFLQNQHHLRFMDLSDN 286
                    L+ + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 8   NLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
           +LS L  L L+ N +Q  L +     L SL++L      L+S     IG+L +LKEL+++
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 67  QNRF-FGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLE----KLDLSFNNFSG 120
            N     +LP    NL +L+ LDLS N     +  +  R L  +      LDLS N  + 
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 121 EFPWSTGNFSSLKL--LDLRSCGFWGKVPHSI-GNFTQLQYLHLGSN 164
                 G F  ++L  L L +      VP  I    T LQ + L +N
Sbjct: 191 FIQ--PGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 48/251 (19%), Positives = 81/251 (32%), Gaps = 39/251 (15%)

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
           +P ++      + L L  N            LR L +              S  +  +L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNP-----------LRHLGS-------------YSFFSFPELQ 55

Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
            LDL++   +  IE      S  +L  L L+ N +  L        S  L+ +     NL
Sbjct: 56  VLDLSRCEIQ-TIEDGAY-QSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNL 112

Query: 266 TKFPNFL-QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL 324
               NF   +   L+ ++++ N IQ          N+ NL   + S N +        + 
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ------SIY 165

Query: 325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
             +   L   P   ++   S N +   I         L+ L L  N L  +        +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 385 DELLVLDLQGN 395
             L  + L  N
Sbjct: 225 S-LQKIWLHTN 234

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 65/382 (17%), Positives = 128/382 (33%), Gaps = 77/382 (20%)

Query: 10  SKLLHLDLSLNELQGE-LPVSVGNLHSLEELDLSANFLSSEWPISIG----NLSSLKELD 64
             +  LD+   EL        +  L   + + L    L+      I        +L EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 65  LSQNRF--FGELPISMG---NLGSLKVLDLSQNG----YFGELPTSIRNLFSLEKLDLSF 115
           L  N     G   +  G       ++ L L          G L +++R L +L++L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 116 NNF--SGEFPWSTG---NFSSLKLLDLRSCGF----WGKVPHSIGNFTQLQYLHLGSNNF 166
           N    +G      G       L+ L L  C         +   +      + L + +N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 167 SGDLLGPIG-----NLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQN----- 212
           +   +  +      +   LEA+ +  C  +      +   + + + L  L L  N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 213 --------------------------SYRGMIELDVLLTSWKNLEFLGLSLNRLS----- 241
                                     + +G  +L  +L + ++L+ L L+ N L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTK-----FPNFLQNQHHLRFMDLSDNRIQGKVPKWL 296
           +L +   +   Q L+ + ++SC+ T      F + L     L  + +S+NR++    + L
Sbjct: 303 LLCETLLEPGCQ-LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 297 ---LDPNMQNLNGFNFSHNLLT 315
              L      L     +   ++
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 72/364 (19%), Positives = 118/364 (32%), Gaps = 78/364 (21%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGE----LPVSVGNLH-SLEELDLSANFLSSEWPISIG- 55
           I S+L     L  L+L  NEL       +   +      +++L L    L+      +  
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 56  ---NLSSLKELDLSQNRF--FGELPISMGNLG---SLKVLDLSQNG----YFGELPTSIR 103
               L +L+EL LS N     G   +  G L     L+ L L            L + +R
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 104 NLFSLEKLDLSFNNFSGE-----FPWSTGNFSSLKLLDLRSCGF----WGKVPHSIGNFT 154
                ++L +S N+ +             +   L+ L L SCG        +   + +  
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 155 QLQYLHLGSNNFSGD-----LLGPIGNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLT 205
            L+ L LGSN            G +     L  + + +C  + +    +   LR    L 
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 206 ALDLAQN-------------------------------SYRGMIELDVLLTSWKNLEFLG 234
            L LA N                               +         +L   + L  L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 235 LSLNRLSV-----LTKATSDTTSQKLKYIGLRSCNLTK-----FPNFLQNQHHLRFMDLS 284
           +S NRL       L +      S  L+ + L  C+++          L   H LR +DLS
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 285 DNRI 288
           +N +
Sbjct: 407 NNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 72/420 (17%), Positives = 133/420 (31%), Gaps = 70/420 (16%)

Query: 35  SLEELDLSANFLSSE-WPISIGNLSSLKELDLSQNRF----FGELPISMGNLGSLKVLDL 89
            ++ LD+    LS   W   +  L   + + L           ++  ++    +L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 90  SQN--GYFG--ELPTSIRNL-FSLEKLDLSFNNFSGE----FPWSTGNFSSLKLLDLRSC 140
             N  G  G   +   ++     ++KL L     +G        +     +L+ L L   
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 141 GFWGKVPHSIG-----NFTQLQYLHLGSNNFSGDLLGPIG----NLRSLEAINVAKCNFS 191
                    +         +L+ L L   + S     P+          + + V+  + +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 192 GQITSSL-----RNLSQLTALDLAQN--SYRGMIELDVLLTSWKNLEFLGLSLNRLS--- 241
                 L      +  QL AL L     +     +L  ++ S  +L  L L  N+L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 242 --VLTKATSDTTSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKVPK 294
              L        S +L+ + +  C +T          L+ +  L+ + L+ N +  +  +
Sbjct: 244 MAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 295 WL---LDPNMQNLNGFNFSHNLLTGFDQHPV--VLPGNKGPLPVPPPGTITYLA-SNNSL 348
            L   L      L          T         VL  N+          +  L  SNN L
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------FLLELQISNNRL 353

Query: 349 TGEIPSWIC-----NLNILESLVLSHNNLSGLLPQCLGNFSDELLV------LDLQGNNL 397
                  +C       ++L  L L+  ++S        + +  LL       LDL  N L
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 33/167 (19%)

Query: 4   SSLGNLSKLLHLDLSLNELQGE----LPVSVGNLH-SLEELDLSANFLSSEWPISIGNL- 57
             L     L  L L+ NEL  E    L  ++      LE L + +   ++       ++ 
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 58  ---SSLKELDLSQNRF--FGELPISMG---NLGSLKVLDLSQNG----YFGELPTSIRNL 105
                L EL +S NR    G   +  G       L+VL L+           L  ++   
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 106 FSLEKLDLSFNNFSGEFPWSTG----------NFSSLKLLDLRSCGF 142
            SL +LDLS N          G              L+ L L    +
Sbjct: 398 HSLRELDLSNNCLGDA-----GILQLVESVRQPGCLLEQLVLYDIYW 439

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 27/207 (13%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
                L+  +  +L    +   +      L  ++  +   + + S   +     ++LKEL
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQ--FFTNLKEL 68

Query: 64  DLSQNRFFGELPIS----MGNLGSLKVLDLSQNGYFGELPTSIRNL--FSLEKLDLSFNN 117
            LS N+      IS    + +L  L+ L +++N        ++  +    L +L L  N 
Sbjct: 69  HLSHNQ------ISDLSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNE 117

Query: 118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
                     +  +L++L +R+     K    +G  ++L+ L L  N  +    G +  L
Sbjct: 118 LRDTDSLI--HLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRL 171

Query: 178 RSLEAINVAKCNFSGQITSSLRNLSQL 204
           + +  I++       +       L   
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 32/203 (15%)

Query: 196 SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL 255
                L+     +L + S   ++    L      ++      + +  L      T    L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKEL----SGVQNFNGDNSNIQSLAGMQFFT---NL 65

Query: 256 KYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315
           K + L    ++     L++   L  + ++ NR++      L       L+     +N L 
Sbjct: 66  KELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELR 119

Query: 316 GFDQHPVVLPGNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSG 374
             D     L   K          +  L   NN L   I   +  L+ LE L L  N ++ 
Sbjct: 120 DTD----SLIHLK---------NLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN 164

Query: 375 LLPQCLGNFSDELLVLDLQGNNL 397
                L     ++  +DL G   
Sbjct: 165 TGG--LTRLK-KVNWIDLTGQKC 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
            ++L   ++L  L+L   EL  +L V  G L  L  LDLS N L S  P+    L +L  
Sbjct: 48  LATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTV 104

Query: 63  LDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFS- 119
           LD+S NR    LP+     LG L+ L L  N     LP  +      LEKL L+ NN + 
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 120 ---GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN 164
              G          +L  L L+       +P        L +  L  N
Sbjct: 163 LPAGLL----NGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 59/274 (21%), Positives = 91/274 (33%), Gaps = 68/274 (24%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            ++  L ++     L     +          L LS N L +    ++   + L +L+L +
Sbjct: 8   KVASHLEVNCDKRNLTA---LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
                +L +  G L  L  LDLS N     LP   + L +L  LD+SFN  +       G
Sbjct: 65  AE-LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS---LPLG 118

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
               L                      +LQ L+L  N            L++L       
Sbjct: 119 ALRGL---------------------GELQELYLKGN-----------ELKTLPP----- 141

Query: 188 CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVL--LTSWKNLEFLGLSLNRLSVLTK 245
                     L    +L  L LA N+    +   +L  L    NL+ L L  N L  + K
Sbjct: 142 --------GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE---NLDTLLLQENSLYTIPK 189

Query: 246 ATSDTTSQKLKYIGLR------SCNLTKFPNFLQ 273
                 S  L +  L       +C +  F  +LQ
Sbjct: 190 GFFG--SHLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 17/128 (13%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIG---NL 57
           +P     L  L  LD+S N L   LP+     L  L+EL L  N L +   +  G     
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT---LPPGLLTPT 147

Query: 58  SSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116
             L++L L+ N    ELP  +   L +L  L L +N     +P        L    L  N
Sbjct: 148 PKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205

Query: 117 NFSGEFPW 124
                 PW
Sbjct: 206 ------PW 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 13/142 (9%)

Query: 5   SLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           +   L+ L  L LS N L   +       + +L  LDLS+N L +       +L +L+ L
Sbjct: 59  TPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQN-------GYFGELPTSIRNLFSLEKLDLSFN 116
            L  N        +  ++  L+ L LSQN           +       L  L  LDLS N
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN----KLPKLMLLDLSSN 173

Query: 117 NFSGEFPWSTGNFSSLKLLDLR 138
                         +     L 
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
             +   +  L +LDLS N L   L   +  +L +LE L L  N +      +  +++ L+
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 62  ELDLSQNRFFGELP----ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
           +L LSQN+     P         L  L +LDLS N       T ++ L +  K  L  +N
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 46/164 (28%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 15  LDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIG---NLSSLKELDLSQNRF 70
           LDLS N L           L +L  L LS N L+    IS      + +L+ LDLS N  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNH- 99

Query: 71  FGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWST-- 126
              L   +  +L +L+VL L  N     +  +   ++  L+KL LS N  S  FP     
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 127 --GNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--QYLHLGSNNF 166
                  L LLDL S          +          L+L +N  
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIG---NLRSLEAINVAKCNFSGQITS----SL 198
           VP S+   +    L L  NN S   L        L +L ++ ++       +      + 
Sbjct: 33  VPQSL--PSYTALLDLSHNNLSR--LRAEWTPTRLTNLHSLLLSHN----HLNFISSEAF 84

Query: 199 RNLSQLTALDLAQNSYRGMIELDVL--LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLK 256
             +  L  LDL+ N     ++  +   L     LE L L  N + V+ +   +  +Q L+
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQ---ALEVLLLYNNHIVVVDRNAFEDMAQ-LQ 139

Query: 257 YIGLRSCNLTKFPN----FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
            + L    +++FP            L  +DLS N+++      L        NG    +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 39/172 (22%)

Query: 229 NLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNR 287
               L LS N LS L    + T    L  + L   +L            +LR++DLS N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 288 IQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNS 347
           +   + ++L   ++Q L      +N +                           +A    
Sbjct: 100 LH-TLDEFLFS-DLQALEVLLLYNNHIVVV-----------------DRNAFEDMAQ--- 137

Query: 348 LTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSD--ELLVLDLQGNNL 397
                         L+ L LS N +S    + + + +   +L++LDL  N L
Sbjct: 138 --------------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 43/257 (16%), Positives = 79/257 (30%), Gaps = 34/257 (13%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
           +  EL      L      +      L+++++SQN     +   +  NL  L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 94  YFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGN 152
               +     +NL +L+ L +S        P    +                        
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLP--DVHKIHS-------------------- 127

Query: 153 FTQLQYLHLGSNNFSGDL-LGPIGNLRS-LEAINVAKCNFSGQITSSLRNLSQLTALDLA 210
             Q   L +  N     +       L      + + K     +I +S  N +QL  L+L+
Sbjct: 128 -LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN 270
            N+    +  DV          L +S  R+  L     +   +KL+       NL K P 
Sbjct: 186 DNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENL-KKLRARSTY--NLKKLPT 241

Query: 271 FLQNQHHLRFMDLSDNR 287
             +    L    L+   
Sbjct: 242 L-EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 11/187 (5%)

Query: 3   PSSLGNLSKLLHLDLS-LNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSL 60
                NL KL  + +   N L   +      NL +L+ L +S   +     +   +    
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 61  KELDLSQNRFFGELPISM--GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
             LD+  N     +  +   G      +L L++NG   E+  S  N   L++L+LS NN 
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNN 189

Query: 119 SGEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNL 177
             E P       S   +LD+          + + N  +L+     +       L  +  L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKL 245

Query: 178 RSLEAIN 184
            +L   +
Sbjct: 246 VALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 17/203 (8%)

Query: 196 SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS-LNRLSVLTKATSDTTSQK 254
            +      L  ++++QN    +IE DV  ++   L  + +   N L  +           
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLLYINPEAFQNLP-N 105

Query: 255 LKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL 313
           L+Y+ + +  +   P+    +      +D+ DN     + +               + N 
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWIC-NLNILESLVLSHNNL 372
           +                           L+ NN+L  E+P+ +    +    L +S   +
Sbjct: 166 IQEIHNSAFNGTQLDE----------LNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

Query: 373 SGLLPQCLGNFSDELLVLDLQGN 395
             L    L N   +L        
Sbjct: 215 HSLPSYGLENLK-KLRARSTYNL 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 32/215 (14%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
           S + L L    L +    +  NL ++  + +S +    +L      NL  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 94  YFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGNFS--SLKLLDLRSCGFWGKVPHSI 150
               +     + L  L+ L +        FP  T  +S     +L++    +   +P + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 151 --GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALD 208
             G   +   L L +N F+                          +     N ++L A+ 
Sbjct: 151 FQGLCNETLTLKLYNNGFT-------------------------SVQGYAFNGTKLDAVY 185

Query: 209 LAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
           L +N Y  +I+ D     +     L +S   ++ L
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 29/260 (11%), Positives = 70/260 (26%), Gaps = 72/260 (27%)

Query: 57  LSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSF 115
             S + L L +         +  NL ++  + +S +    +L +    NL  +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG 175
                          +L  +D          P ++     L++L + +            
Sbjct: 90  TR-------------NLTYID----------PDALKELPLLKFLGIFNTG---------- 116

Query: 176 NLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
            L+    +            + + +      L++  N Y   I ++           L L
Sbjct: 117 -LKMFPDL------------TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW 295
             N  + +     + T                          L  + L+ N+    + K 
Sbjct: 164 YNNGFTSVQGYAFNGTK-------------------------LDAVYLNKNKYLTVIDKD 198

Query: 296 LLDPNMQNLNGFNFSHNLLT 315
                    +  + S   +T
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 24/206 (11%), Positives = 63/206 (30%), Gaps = 41/206 (19%)

Query: 196 SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR-LSVLTKATSDTTSQK 254
            +  NL  ++ + ++ +     +E      +   +  + +   R L+ +           
Sbjct: 49  HAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELP-L 106

Query: 255 LKYIGLRSCNLTKFPN--FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
           LK++G+ +  L  FP+   + +      ++++DN     +P                 +N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 313 LLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNN- 371
             T                                    +  +  N   L+++ L+ N  
Sbjct: 167 GFT-----------------------------------SVQGYAFNGTKLDAVYLNKNKY 191

Query: 372 LSGLLPQCLGNFSDELLVLDLQGNNL 397
           L+ +     G       +LD+   ++
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSV 217

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 38/279 (13%), Positives = 82/279 (29%), Gaps = 30/279 (10%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGE-LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           +P      +++  LDL    L+ E     +    +LE L+           +       L
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           K L + +      +    G +    ++ L+Q                LE + +  ++ + 
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQG------------CQELEYMAVYVSDITN 392

Query: 121 E----FPWSTGNFSSLKLLDLRSCGFWGKVPHSIG------NFTQLQYLHL--GSNNFSG 168
           E          N    +L+ L        +P   G         +L+           + 
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 169 DLLGPIG-NLRSLEAINVAKCNFSGQ-ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
             L  IG    ++  + +     S + +    R    L  L++    +     +   +T 
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AIAAAVTK 511

Query: 227 WKNLEFLGLSLNRLSV--LTKATSDTTSQKLKYIGLRSC 263
             +L +L +   R S+              ++ I  R  
Sbjct: 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRV 550

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 49/309 (15%), Positives = 95/309 (30%), Gaps = 29/309 (9%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
           N   L+ + +  +    EL        +LEE    +       P    NL   ++L    
Sbjct: 218 NCRSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 68  NRFFG--ELPISMGNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPW 124
             + G  E+PI       ++ LDL       E   T I+   +LE L+            
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 125 STGNFSSLKLLDLRSCGFWGKVPHSIGNFT------------QLQYLHLGSNNFSGDLLG 172
                  LK L +        +    G  +            +L+Y+ +  ++ + + L 
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396

Query: 173 PIG-NLRSLEAINVAKCNFSGQITSS---------LRNLSQLTALDLAQNSYR-GMIELD 221
            IG  L++L    +   +   +IT           L    +L              + L 
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 222 VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK--FPNFLQNQHHLR 279
            +     N+ ++ L     S             L+ + +R C  ++      +     LR
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516

Query: 280 FMDLSDNRI 288
           ++ +   R 
Sbjct: 517 YLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 43/268 (16%), Positives = 87/268 (32%), Gaps = 23/268 (8%)

Query: 58  SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
            +L+ L L          +   N G      +++            NL  L+ +      
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS---------NNLRQLKSVHFRRMI 123

Query: 118 FS--GEFPWSTGNFSSLKLLDLRSC-GFWGKVPHSIG-NFTQLQYLHLGSNNF---SGDL 170
            S       +      L+ L L  C GF      SI  +  +++ L +  ++F    G  
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 171 LGPIG-NLRSLEAINVAKCNFSGQITSSL----RNLSQLTALDLAQNSYRGMIELDVLLT 225
           L  +  +  SLE +N     F+      L    RN   L ++ +       ++       
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSD 285
           + +      L+ + + +  K  +    +KL  +GL      + P        +R +DL  
Sbjct: 244 NLEEFCGGSLNED-IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302

Query: 286 NRIQGKVPKWLLDPNMQNLNGFNFSHNL 313
             ++ +    L+     NL      + +
Sbjct: 303 ALLETEDHCTLI-QKCPNLEVLETRNVI 329

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 20/268 (7%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69
             L    L+    Q    V      S +E  L        W         L   +LS  +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL-KDRPECWCRDSATDEQLFRCELSVEK 360

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG----EFPWS 125
               L   + +   L+ L+         +   +R L  L     +   FS     +   +
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 126 TGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINV 185
                     DLRS     +       +  ++ LHL   + +  +L  +  L  +  +++
Sbjct: 420 AYLD------DLRSKFLL-ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDL 470

Query: 186 AKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245
           +       +  +L  L  L  L  + N+   +  +  L      L+ L L  NRL     
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANL----PRLQELLLCNNRLQQSAA 525

Query: 246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQ 273
                +  +L  + L+  +L +     +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSS-EWPISIGNLSS 59
            +P +L  L  L  L  S N L+  +   V NL  L+EL L  N L        + +   
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534

Query: 60  LKELDLSQN 68
           L  L+L  N
Sbjct: 535 LVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 53/314 (16%), Positives = 98/314 (31%), Gaps = 28/314 (8%)

Query: 86  VLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK 145
            +  S+    G    ++  +     L + +    G    S      L    L        
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 146 VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205
                      +   L   +              L    ++    S  + S L +  +L 
Sbjct: 318 FRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQ 375

Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
            L+           L  ++   + L+ L      L   +   +    +      LRS  L
Sbjct: 376 ELEPEN-----KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430

Query: 266 TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLP 325
            +          +R + L+   +   +    L+  +  +   + SHN L         LP
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLT-VLCH--LE-QLLLVTHLDLSHNRLR-------ALP 479

Query: 326 GNKGPLPVPPPGTITYL-ASNNSLTGEIPSWICNLNILESLVLSHNNLSGL-LPQCLGNF 383
                L       +  L AS+N+L   +   + NL  L+ L+L +N L      Q L + 
Sbjct: 480 PALAALR-----CLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 384 SDELLVLDLQGNNL 397
              L++L+LQGN+L
Sbjct: 533 P-RLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 47/270 (17%), Positives = 73/270 (27%), Gaps = 27/270 (10%)

Query: 106 FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN 165
             L    L+       F        S K   L                 QL    L S  
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCEL-SVE 359

Query: 166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLT 225
            S  L   + + + L+ +          I   +R L  L         +  +  +D +  
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-- 417

Query: 226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSD 285
                     S   L            + L    L   +LT   + L+    +  +DLS 
Sbjct: 418 -RAAYLDDLRSKFLLENSVLKMEYADVRVLH---LAHKDLTVLCH-LEQLLLVTHLDLSH 472

Query: 286 NRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYL-AS 344
           NR++  +P  L    ++ L     S N L   D              V     +  L   
Sbjct: 473 NRLR-ALPPALA--ALRCLEVLQASDNALENVD-------------GVANLPRLQELLLC 516

Query: 345 NNSLTG-EIPSWICNLNILESLVLSHNNLS 373
           NN L        + +   L  L L  N+L 
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 27/265 (10%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISI-GNLSSL 60
           +  +L    +L  L    + +   LP        L  L+LS   + S   + +      L
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTS----------IRNLFSLEK 110
           + L +        L +       L+ L +  +  F   P                  LE 
Sbjct: 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 111 LDLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGFWGKVPHSIG-----------NFTQLQY 158
           +       +         N  ++    L           ++            +   L+ 
Sbjct: 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

Query: 159 LHLGSNNFSGDLLGPIG-NLRSLEAINVAKCNFSGQ-ITSSLRNLSQLTALDLAQNSYRG 216
           L L S   +  +   IG   + +E ++VA    S   +   L     L  L++ ++   G
Sbjct: 437 LSL-SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI-RDCPFG 494

Query: 217 MIELDVLLTSWKNLEFLGLSLNRLS 241
              L    +  + +  L +S   +S
Sbjct: 495 DKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 33/313 (10%)

Query: 8   NLSKLLHLDLSL--NELQGE-LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELD 64
             + L+ L++S   +E+    L   V    +L+ L L+      +    +     L+EL 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 65  LS------QNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
                   +   +  L +++     L+ L    +     LP        L  L+LS+   
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

Query: 119 SGE-FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD-------- 169
                         L+ L +        +         L+ L +  +             
Sbjct: 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361

Query: 170 --LLGPIGNLRSLEAINVAKCNFSGQ-ITSSLRNLSQLTALDLAQNSYRGMIELDVLLT- 225
             L+        LE++       +   + +  RN   +T   L     +    L +    
Sbjct: 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421

Query: 226 -SWKNLEFLGLSLNRLSVLTKATSDTT-------SQKLKYIGLRSCNLTK--FPNFLQNQ 275
             +  +      L RLS L+   +D         ++K++ + +     +     + L   
Sbjct: 422 IGFGAIVEHCKDLRRLS-LSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480

Query: 276 HHLRFMDLSDNRI 288
             LR +++ D   
Sbjct: 481 DSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 37/301 (12%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVG-NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
            + +     + +       P +V      +  ++L      +++ +            + 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQ----NGYFGELPTSIRNLFSLEKLDLSF-NNFSGE 121
                        +   L+ + L +    +     +    ++  + + L LS    FS +
Sbjct: 99  A---------MSSSYTWLEEIRLKRMVVTDDCLELI---AKSFKNFKVLVLSSCEGFSTD 146

Query: 122 -FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF----TQLQYLHLG--SNNFSGDLLGPI 174
                     +LK LDLR         H + +F    T L  L++   ++  S   L  +
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206

Query: 175 G-NLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL 233
                +L+++ + +     ++ + L+   QL  L      Y   +  DV       L   
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT--GGYTAEVRPDVYSGLSVALSGC 264

Query: 234 GLSLNRLSVLTKATSDTTS------QKLKYIGLRSCNLT--KFPNFLQNQHHLRFMDLSD 285
              L  LS    A             +L  + L    +        L     L+ + + D
Sbjct: 265 -KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 286 N 286
            
Sbjct: 324 Y 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 39/311 (12%), Positives = 83/311 (26%), Gaps = 43/311 (13%)

Query: 2   IPSSLGNLSKLLHLDLSL------NELQGELPVSVGNLHSLEELDLSANFLSSEWPISIG 55
           + + L    +L  L           ++   L V++     L  L    + + +  P    
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286

Query: 56  NLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114
             S L  L+LS         + +      L+ L +        L         L +L + 
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346

Query: 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI 174
            +      P        L  +                   +L+ +       +   L  I
Sbjct: 347 PSEPFVMEPNVALTEQGLVSV--------------SMGCPKLESVLYFCRQMTNAALITI 392

Query: 175 G-NLRSLEAINVAKCNFSGQ-----------ITSSLRNLSQLTALDLAQNSYRGMI---E 219
             N  ++    +                     + + +   L  L L      G++    
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-----SGLLTDKV 447

Query: 220 LDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT--KFPNFLQNQHH 277
            + + T  K +E L ++    S L      +    L+ + +R C                
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507

Query: 278 LRFMDLSDNRI 288
           +R + +S   +
Sbjct: 508 MRSLWMSSCSV 518

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 49/282 (17%), Positives = 96/282 (34%), Gaps = 45/282 (15%)

Query: 4   SSLGNLSKLLHLDLS-LNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
           +   +  ++ H+DLS        L   +     L+ L L    LS     ++   S+L  
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF---S 119
           L+LS    F E         +L+ L              + +   L++L+LS+       
Sbjct: 147 LNLSGCSGFSE--------FALQTL--------------LSSCSRLDELNLSWCFDFTEK 184

Query: 120 GEFPWSTGNFSSLKLLDLRSCGFW---GKVPHSIGNFTQLQYLHL-GSNNFSGDLLGPIG 175
                      ++  L+L           +   +     L +L L  S     D      
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 176 NLRSLEAINVAKCNFSGQIT----SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLE 231
            L  L+ +++++C     I       L  +  L  L +      G++    L    + L 
Sbjct: 245 QLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQV-----FGIVPDGTLQLLKEALP 296

Query: 232 FLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFL 272
            L ++ +  + + + T    ++K + I    C LT + P+ L
Sbjct: 297 HLQINCSHFTTIARPT--IGNKKNQEIWGIKCRLTLQKPSCL 336

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 52/317 (16%), Positives = 98/317 (30%), Gaps = 70/317 (22%)

Query: 6   LGNLSKLLHLDLSLNELQGE-----LPVSVGNLHSLEELDLSANFLSSEWPISIG----- 55
                 +  LDLSLN L        +        S+  L+LS N L  +    +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 56  NLSSLKELDLSQNRF--FGELPIS---MGNLGSLKVLDLSQNGYFGE-----LPTSIRNL 105
             +++  L+LS N         +         ++ VLDL  N  F          +  NL
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNL 136

Query: 106 F-SLEKLDLSFNNFSGEFPWS-----TGNFSSLKLLDLRSCGFWGKVPHSIGNF-----T 154
             S+  L+L  N+   +             +++  L+LR      K    +  F      
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN-- 212
            +  L L +N         +       +I                  + + +L+L  N  
Sbjct: 197 SVTSLDLSANLLGLKSYAELA--YIFSSIP-----------------NHVVSLNLCLNCL 237

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272
               +  L +L  S K+L+ + L  + +        + + ++ K +G             
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVK-------NMSKEQCKALG----------AAF 280

Query: 273 QNQHHLRFMDLSDNRIQ 289
            N   +  +D +   I 
Sbjct: 281 PNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 21/133 (15%)

Query: 10  SKLLHLDLSLNELQGE----LPVSVGNLH-SLEELDLSANFLSSEWPISIG-----NLSS 59
           + +  L+L  N L  +    L   + ++  S+  LDLSAN L  +    +        + 
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 60  LKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGY-------FGELPTSIRNLFSL 108
           +  L+L  N   G     L +   +L  L+ + L  +            L  +  N+  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 109 EKLDLSFNNFSGE 121
             +D +       
Sbjct: 287 ILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 37/245 (15%)

Query: 107 SLEKLDLSFNNFSGE-----FPWSTGNFSSLKLLDLRSCGFWGKVPHSIG-----NFTQL 156
            +  LDLS NN                 +S+  L+L       K    +          +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 157 QYLHLGSNNFSGDLLGPIGNL-----RSLEAINVAKCNFSGQ----ITSSLRNL-SQLTA 206
             L+L  N  S      +         ++  +++   +FS +       +  NL + +T+
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 207 LDLAQN--SYRGMIEL-DVLLTSWKNLEFLGLSLNRLS-----VLTKATSDTTSQKLKYI 258
           L+L  N    +   EL  +L     N+  L L  N L+      L K  + +    +  +
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSL 201

Query: 259 GLRSCNLTK------FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD--PNMQNLNGFNFS 310
            L +  L           F    +H+  ++L  N + G   + L     ++++L      
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 311 HNLLT 315
           ++++ 
Sbjct: 262 YDIVK 266

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 11  KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKELDLSQNR 69
           + + L   +  ++ ++  ++  L + + L LS N +     IS +  + +L+ L L +N 
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK---ISSLSGMENLRILSLGRNL 81

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117
              ++        +L+ L +S N     L + I  L +L  L +S N 
Sbjct: 82  -IKKIENLDAVADTLEELWISYN-QIASL-SGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 6   LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKELD 64
           L  +  L  L L  N ++ ++        +LEEL +S N ++S   +S I  L +L+ L 
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLY 121

Query: 65  LSQNRF--FGELPISMGNLGSLKVLDLSQN 92
           +S N+   +GE+   +  L  L+ L L+ N
Sbjct: 122 MSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 200 NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIG 259
             ++   ++L       + ++D  L++ K  + L LS N +  ++  +       L+ + 
Sbjct: 21  VATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME---NLRILS 76

Query: 260 LRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP--NMQNLNGFNFSHNLLTGF 317
           L    + K  N       L  + +S N+I        L     + NL     S+N +T +
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIA------SLSGIEKLVNLRVLYMSNNKITNW 130

Query: 318 DQ 319
            +
Sbjct: 131 GE 132

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           P +     KL  +DLS N++  EL       L SL  L L  N ++         L SL+
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107

Query: 62  ELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
            L L+ N+    L +    +L +L +L L  N        +   L +++ + L   N   
Sbjct: 108 LLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN--- 162

Query: 121 EFPW 124
             P+
Sbjct: 163 --PF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 30/152 (19%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNG 93
           ++ E+ L  N +    P +      L+ +DLS N+   EL       L SL  L L  N 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGN- 90

Query: 94  YFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-G 151
              ELP S+   LFSL+ L L+ N                    +        +      
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANK-------------------INC------LRVDAFQ 125

Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
           +   L  L L  N       G    LR+++ +
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 22/180 (12%)

Query: 15  LDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIG---NLSSLKELDLSQNRF 70
           LDL  N+L   LP      L  L  L L+ N L +   +  G    L +L+ L ++ N+ 
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNK- 96

Query: 71  FGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNF----SGEFPW 124
              LPI +   L +L  L L +N     LP  +  +L  L  L L +N       G F  
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-- 153

Query: 125 STGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
                +SLK L L +     +VP       T+L+ L L +N       G   +L  L+ +
Sbjct: 154 --DKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 8   NLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
           +L+KL +L L  NELQ  LP  V   L SL+EL L  N L      +   L+ LK L L 
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQN 92
            N+       +  +L  LK+L L +N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 5e-07
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 57  LSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIR--NLFSLEKLDLS 114
           L ++  L+  + +    L I      +LK L++   G    +   I   +L +LEKL L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 115 F--NNFSGEFP-------WSTGNFSSLKLLDLRSCGFWGKVPHSIGNF---TQLQYLHLG 162
               ++  +         +S   F +LK L +        V           QL+ + + 
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 163 SNNFSGD----LLGPIGNLRSLEAINVAKCNFSGQITSSLRN 200
           +   + +    LL  +  ++ L+ IN+     S ++   L+ 
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 6e-06
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 18/131 (13%)

Query: 9   LSKLLHLDLSLNELQGELPVSVG--NLHSLEELDLSANFLSSEWPISIGNLS-------- 58
              L  L++    L   +   +   +L +LE+L L        +   +            
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 59  -SLKELDLSQNRFFGELPISMGN---LGSLKVLDLSQNGY----FGELPTSIRNLFSLEK 110
            +LK L +        +         L  L+ +D+S           L   +  +  L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 111 LDLSFNNFSGE 121
           +++ +N  S E
Sbjct: 312 INMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 163 SNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDV 222
           S     DL   +  +  L  + +   N    ++   +    L +L++        +  D+
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213

Query: 223 LLTSWKNLEFLGLSLNR--------LSVLTKATSDTTSQKLKYIGLRSCNLT-KFPNFL- 272
           L +   NLE L L +          ++V     S      LK++G+              
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 273 --QNQHHLRFMDLSDNRIQGKVPKWLLD--PNMQNLNGFNFSHNLLT 315
                  L  MD+S   +  +  + LLD    +++L   N  +N L+
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 8   NLSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKELDL 65
             + +  L L   +   G++        +LE L L    L S   +S +  L  LK+L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 66  SQNRFFGELPISMGNLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFN 116
           S+NR FG L +    L +L  L+LS N       L   ++ L  L+ LDL   
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLH---SLEELDLSANFLSSEWPISIGNL 57
           +I         L  L L    L      SV NL     L++L+LS N +     +    L
Sbjct: 40  KIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 58  SSLKELDLSQNRF--FGELPISMGNLGSLKVLDLSQN 92
            +L  L+LS N+      L   +  L  LK LDL   
Sbjct: 95  PNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 8   NLSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKELDL 65
             S +  L L  +    G+L         LE L      L+S   I+ +  L+ LK+L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLEL 71

Query: 66  SQNRFFGELPISMGNLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFN 116
           S NR  G L +      +L  L+LS N       +   ++ L +L+ LDL   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHS---LEELDLSANFLSSEWPISIGNL 57
           ++        +L  L      L      S+ NL     L++L+LS N +S    +     
Sbjct: 33  KLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 58  SSLKELDLSQNRF--FGELPISMGNLGSLKVLDLSQN 92
            +L  L+LS N+      +   +  L +LK LDL   
Sbjct: 88  PNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 56  NLSSLKELDLSQNRF-FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114
             S +KEL L  +R   G+L         L+ L     G    +  ++  L  L+KL+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELS 72

Query: 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQYLHLGSN 164
            N  SG          +L  L+L             +     L+ L L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHH 277
           I L++   +  +++ L L  +R +           ++L+++   +  LT   N L   + 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNK 65

Query: 278 LRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQ 319
           L+ ++LSDNR+ G +   +L     NL   N S N +     
Sbjct: 66  LKKLELSDNRVSGGLE--VLAEKCPNLTHLNLSGNKIKDLST 105

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS-IGNLSSLKE 62
           +   N  +   LDL   ++   +      L   + +D S N +     +     L  LK 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLKT 68

Query: 63  LDLSQNRFFGELPISMGNLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFN 116
           L ++ NR           L  L  L L+ N     G+L   + +L SL  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 22/135 (16%)

Query: 39  LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS----LKVLDLSQNGY 94
           + L+A  +         N    +ELDL   +        + NLG+       +D S N  
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI 54

Query: 95  FGELPTSIRN---LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF--WGKVPHS 149
                  +     L  L+ L ++ N               L  L L +      G +   
Sbjct: 55  -----RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DP 108

Query: 150 IGNFTQLQYLHLGSN 164
           + +   L YL +  N
Sbjct: 109 LASLKSLTYLCILRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 85/559 (15%), Positives = 150/559 (26%), Gaps = 172/559 (30%)

Query: 14  HLDLSLNELQGE----LPVS----VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDL 65
           H+D    E Q +    L V     V N    +  D+  + LS E    I ++   K+   
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE---EIDHIIMSKDAVS 62

Query: 66  SQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL----------PTSIRNLFSLEKLDLSF 115
              R F  L      +    V ++ +  Y   L          P+ +  ++  E+ D  +
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI-EQRDRLY 120

Query: 116 NN---FSGEFPWSTGNFSSLK--LLDLRS-----------CG------------------ 141
           N+   F+         +  L+  LL+LR             G                  
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 142 ----FW---GKV--PHSIGNFTQLQYL-HLGSNNFSGDLLGPIGNLRSLEAI-------- 183
               FW        P ++     LQ L +    N++            + +I        
Sbjct: 181 DFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 184 -------------NVAKCN------FSGQ----ITSSLRNLSQLTALDLAQNSYRGMIEL 220
                        NV   N      F+      +T+  R       L  A  ++  +   
Sbjct: 239 KSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHH 294

Query: 221 DVLLTSWKNLEFLGLSLN-RLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLR 279
            + LT  +    L   L+ R   L +    T  ++L  I      +        N  H+ 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVN 351

Query: 280 FMDLSDNRIQGKVPKWLLDPN-MQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVP-PPG 337
              L+   I+  +    L+P   + +            FD+   V P +        P  
Sbjct: 352 CDKLT-TIIESSLNV--LEPAEYRKM------------FDRL-SVFPPS-----AHIPTI 390

Query: 338 TITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL-LPQCLGNFSDELLVLDLQGNN 396
            ++ +  +  +       + N     SLV      S + +P          L L ++  N
Sbjct: 391 LLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------SIYLELKVKLEN 441

Query: 397 LP------------LSKGCESGEAPTNED---------H---TEGSEE-SLFSGAS---D 428
                                   P   D         H    E  E  +LF        
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 429 W---KIILTGYVGGLVAGL 444
           +   KI            +
Sbjct: 502 FLEQKIRHDSTAWNASGSI 520

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 51  PISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109
              +    +L EL +   +    L    +  LG L+ L + ++G     P +      L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRS 139
           +L+LSFN       W T    SL+ L L  
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 97  ELPTSIRNLFSLEKLDLSFNNFSGEFPWST-GNFSSLKLLDLRSCGFWGKVPHSIGNFTQ 155
           +    +    +L +L +                   L+ L +   G     P +     +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 156 LQYLHLGSNNFS 167
           L  L+L  N   
Sbjct: 82  LSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 25  ELPVSVGNLHSLEELDLSAN-FLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83
           +    +    +L EL +     L       +  L  L+ L + ++      P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 84  LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
           L  L+LS N     L        SL++L LS N  
Sbjct: 82  LSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE 62
              L  L +L +L +  + L+   P +      L  L+LS N L S    ++  L SL+E
Sbjct: 49  LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQE 107

Query: 63  LDLSQNRF 70
           L LS N  
Sbjct: 108 LVLSGNPL 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 8   NLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
            L +L  ++ S N++  ++          + E+ L++N L +        L SLK L L 
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113

Query: 67  QNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPW 124
            NR    +       L S+++L L  N     +       L SL  L+L   N     P+
Sbjct: 114 SNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL-LAN-----PF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 11/131 (8%)

Query: 15  LDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIG---NLSSLKELDLSQNRF 70
           L L+ NE        +   L  L +++ S N ++    I  G     S + E+ L+ NR 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNR- 92

Query: 71  FGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWSTGN 128
              +   M   L SLK L L  N     +       L S+  L L  N  +   P +   
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 129 FSSLKLLDLRS 139
             SL  L+L +
Sbjct: 152 LHSLSTLNLLA 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 40/118 (33%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 8   NLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS 66
           +L  L  L L  N+L   LPV V  +L  L  LDL  N L+         L  LKEL + 
Sbjct: 62  SLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120

Query: 67  QNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW 124
            N+   ELP  +  L  L  L L QN        +   L SL    L F N     PW
Sbjct: 121 CNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN-----PW 171

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 69/301 (22%)

Query: 9   LSKLLHLDLSLNELQGELPVSVG-----NLHSLEELDLSANFLSSEWPISIGN-LSSLKE 62
           LS L  L+L+   +       V        H+L+E++L++  L      ++       ++
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 63  LDLSQNRFFGE--LPIS---MGNLGSLKVLDLSQNGYFGE-----LPTSIRNLFSLEKLD 112
           L L  N    E    +    + +   +  L LS N          L   +    S+  L 
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLS 189

Query: 113 LSFNNFSGEFPWSTGNFSSLKLL--DLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170
           L       E          L+LL   L                 QLQ L++  N      
Sbjct: 190 LLHTGLGDE---------GLELLAAQLDRN-------------RQLQELNVAYNG----- 222

Query: 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN--SYRGMIELDVLLTSWK 228
            G             A       +  + R    L  L L  N  S  G   L  L  + +
Sbjct: 223 AGDTA----------ALA-----LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAE 267

Query: 229 NLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRI 288
               + +SL   + +++  S   S+  +         +     +Q    L   DL D+R 
Sbjct: 268 GGARVVVSLTEGTAVSEYWSVILSEVQRN------LNSWDRARVQRHLELLLRDLEDSRG 321

Query: 289 Q 289
            
Sbjct: 322 A 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 20/183 (10%)

Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGN-LRSLEAINVAKCNFSGQ----ITSSLR-NLSQLT 205
               L  ++L S       L  +         + +   +   +    +   L  +  Q+T
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 206 ALDLAQNS--YRGMIELDVLLTSWKNLEFLGLSLNRLS-----VLTKATSDTTSQKLKYI 258
            L L+ N     G+  L   L    ++  L L    L      +L           L+ +
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ--LQEL 216

Query: 259 GLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL 313
            +                 +    L  + L  N +  +  + L D       G     +L
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 314 LTG 316
             G
Sbjct: 277 TEG 279

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
            ++   L+KL  L+L  N+LQ  L   V  +L  L  L L+ N L+S       +L+ L 
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110

Query: 62  ELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFS 119
           +L L  N+    LP  +   L  LK L L+ N     +P      L +L+ L LS N   
Sbjct: 111 KLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 120 GEFPWSTGNFSSLKLLDLRS 139
                +      L+ + L  
Sbjct: 169 SVPHGAFDRLGKLQTITLFG 188

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           +P  L N   L  +DLS N +   L      N+  L  L LS N L    P +   L SL
Sbjct: 46  VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104

Query: 61  KELDLSQNRFFGELP-ISMG---NLGSLKVLDLSQN 92
           + L L  N    ++  +  G   +L +L  L +  N
Sbjct: 105 RLLSLHGN----DISVVPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 23/119 (19%)

Query: 15  LDLSLNELQGELPVSV-GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
           L L+ NEL       + G L  L +L+L  N L+   P +    S ++EL L +N+   E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKE 92

Query: 74  LPISM-GNLGSLKVLDLSQN-------GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW 124
           +   M   L  LK L+L  N       G F        +L SL  L+L  +N     P+
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSF-------EHLNSLTSLNL-ASN-----PF 138

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 13/122 (10%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF---WG--KVPHS 149
           +  LPT   + + ++ +D + +               ++ + L  C +       ++   
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109

Query: 150 IGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLEAINVAKC-NFSGQITSSLRNLSQLTAL 207
                 +  + + S  N +   +  + + R+L+ + ++       +        + L +L
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169

Query: 208 DL 209
           +L
Sbjct: 170 EL 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.8e-52  Score=444.66  Aligned_cols=392  Identities=33%  Similarity=0.448  Sum_probs=266.0

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC-CC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL-GS   83 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~   83 (477)
                      .++++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|..  .+++|++|++++|.+++.+|..+... ++
T Consensus       218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~  295 (768)
T 3rgz_A          218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT  295 (768)
T ss_dssp             BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred             ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence            3889999999999999999888989999999999999998887766543  66777777777777766666666553 67


Q ss_pred             CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcc-ccCCCCCCEEEccCCCCcccCCccccC----------
Q 038739           84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS-TGNFSSLKLLDLRSCGFWGKVPHSIGN----------  152 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~----------  152 (477)
                      |++|++++|++++.+|..++++++|++|++++|.+++.+|.. +..+++|++|++++|.+.+.+|..+..          
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L  375 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL  375 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred             CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence            777777777766666666666666666666666666555544 566666666666666665555554443          


Q ss_pred             -----------------CCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739          153 -----------------FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       153 -----------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                                       +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus       376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  455 (768)
T 3rgz_A          376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE  455 (768)
T ss_dssp             CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence                             445566666666665566666666777777777777777677777777777777777777777


Q ss_pred             cccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCC
Q 038739          216 GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVP  293 (477)
Q Consensus       216 ~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p  293 (477)
                      +..+..  +..+++|++|++++|++...  .+.. ..+++|++|++++|+++ .+|.++..+++|++|++++|++++.+|
T Consensus       456 ~~~p~~--~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          456 GEIPQE--LMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             SCCCGG--GGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcCCHH--HcCCCCceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            666655  66777777777777755432  2222 25677888888888885 677888888888888888888888888


Q ss_pred             ccCCcccCCCCCeEEecCCcccccCCCCcc--------------------------------------------------
Q 038739          294 KWLLDPNMQNLNGFNFSHNLLTGFDQHPVV--------------------------------------------------  323 (477)
Q Consensus       294 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------------  323 (477)
                      ..+.  .+++|+.|++++|+++|.+|..+.                                                  
T Consensus       532 ~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  609 (768)
T 3rgz_A          532 AELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST  609 (768)
T ss_dssp             GGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred             HHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence            8777  788888888888888876554320                                                  


Q ss_pred             -----cCCC--CCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739          324 -----LPGN--KGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ  393 (477)
Q Consensus       324 -----l~~n--~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls  393 (477)
                           +..+  .|.+|..   ++.++.|++++|+++|.+|..++++++|+.|||++|+++|.+|..++.++ +|++|||+
T Consensus       610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs  688 (768)
T 3rgz_A          610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLS  688 (768)
T ss_dssp             TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECC
T ss_pred             ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECC
Confidence                 0001  1111111   23455666666666666666666666666666666666666666666665 56666666


Q ss_pred             CCcCCcccCCCC
Q 038739          394 GNNLPLSKGCES  405 (477)
Q Consensus       394 ~N~l~~~~p~~~  405 (477)
                      +|+++|.+|...
T Consensus       689 ~N~l~g~ip~~l  700 (768)
T 3rgz_A          689 SNKLDGRIPQAM  700 (768)
T ss_dssp             SSCCEECCCGGG
T ss_pred             CCcccCcCChHH
Confidence            666666666544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-51  Score=441.93  Aligned_cols=384  Identities=33%  Similarity=0.458  Sum_probs=290.1

Q ss_pred             CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739            6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK   85 (477)
Q Consensus         6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   85 (477)
                      +.++++|++|++++|.+++.+|. +.++++|++|++++|++++..|..+..+++|++|++++|.+++..|..  .+++|+
T Consensus       196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred             cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence            47899999999999999988886 999999999999999999999999999999999999999999877765  899999


Q ss_pred             EEeCcCCCCCCcccccccCC-CCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcc-ccCCCCCcEEECCC
Q 038739           86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS-IGNFTQLQYLHLGS  163 (477)
Q Consensus        86 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~  163 (477)
                      +|++++|++++.+|..+... ++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            99999999998999888775 99999999999999999999999999999999999998888875 99999999999999


Q ss_pred             CcCCCcCCcCCCCCC-CCCEEEccCCcccc--------------------------ccchhhhcCCCCCEEeCcCCcCcc
Q 038739          164 NNFSGDLLGPIGNLR-SLEAINVAKCNFSG--------------------------QITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       164 n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~--------------------------~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      |.+++.+|..+..++ +|++|++++|.+++                          .+|..+..+++|++|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            999877777666554 55555555555554                          444445555555555555555554


Q ss_pred             ccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCCc
Q 038739          217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPK  294 (477)
Q Consensus       217 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p~  294 (477)
                      ..+..  +..+++|+.|++++|.+..  ..+.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++.+|.
T Consensus       433 ~~p~~--l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          433 TIPSS--LGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccHH--HhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            44433  4455555555555553331  11111 13455666666666653 4455556666666666666666666665


Q ss_pred             cCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChh-------------------
Q 038739          295 WLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSW-------------------  355 (477)
Q Consensus       295 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~-------------------  355 (477)
                      ++.  .+++|+.|++++|++++.++..+          ..+++|+.|++++|.++|.+|..                   
T Consensus       509 ~~~--~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          509 WIG--RLENLAILKLSNNSFSGNIPAEL----------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             GGG--GCTTCCEEECCSSCCEEECCGGG----------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             HHh--cCCCCCEEECCCCcccCcCCHHH----------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence            555  55666666666666655544332          12455666666666666655544                   


Q ss_pred             ---------------------------------------------------hhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739          356 ---------------------------------------------------ICNLNILESLVLSHNNLSGLLPQCLGNFS  384 (477)
Q Consensus       356 ---------------------------------------------------~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  384 (477)
                                                                         ++.+++|+.|||++|+++|.+|..++.++
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  656 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP  656 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence                                                               44567899999999999999999999999


Q ss_pred             cccceeecCCCcCCcccCCCCCCCC
Q 038739          385 DELLVLDLQGNNLPLSKGCESGEAP  409 (477)
Q Consensus       385 ~~L~~L~Ls~N~l~~~~p~~~~~~~  409 (477)
                       .|++|+|++|+++|.+|...+..+
T Consensus       657 -~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          657 -YLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             -TCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             -cCCEEeCcCCccCCCCChHHhCCC
Confidence             999999999999999998776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-45  Score=386.45  Aligned_cols=398  Identities=20%  Similarity=0.168  Sum_probs=233.3

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ||..+..  .+++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|++++..|..|+++
T Consensus        27 iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           27 IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             CcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            4444432  56666666666665556666666666666666666665556666666666666666666665556666666


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc--EE
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ--YL  159 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L  159 (477)
                      ++|++|++++|++++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|+  .|
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL  184 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred             ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence            6666666666666554455566666666666666666543222333356666666666655554444455555544  44


Q ss_pred             ECCCCcCC------------------------------------------------------------------------
Q 038739          160 HLGSNNFS------------------------------------------------------------------------  167 (477)
Q Consensus       160 ~l~~n~l~------------------------------------------------------------------------  167 (477)
                      ++++|.++                                                                        
T Consensus       185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n  264 (606)
T 3t6q_A          185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH  264 (606)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred             ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence            44444443                                                                        


Q ss_pred             ---CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739          168 ---GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT  244 (477)
Q Consensus       168 ---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  244 (477)
                         +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+....
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC--GGGCTTCSEEECCSCSSCCBC
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh--hhccCcCCEEECCCCCccccc
Confidence               333333555566666666666665 45555666666666666666666554433  556666666666666443111


Q ss_pred             ccCCccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCC
Q 038739          245 KATSDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP  321 (477)
Q Consensus       245 ~~~~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  321 (477)
                      .......+++|++|++++|.++.+   +..+..+++|++|++++|++.+..|..+.  .+++|+.|++++|++++..+..
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCC
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccch
Confidence            111122456677777777766544   44566667777777777777666666665  6667777777777766554322


Q ss_pred             -c---------ccCCC--CCCCC---CCCCccceeecCCCcCccC---CChhhhccCCCCeEeCCCCcCcccCCchhhhc
Q 038739          322 -V---------VLPGN--KGPLP---VPPPGTITYLASNNSLTGE---IPSWICNLNILESLVLSHNNLSGLLPQCLGNF  383 (477)
Q Consensus       322 -~---------~l~~n--~~~~~---~~~~~l~~L~ls~n~l~~~---~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l  383 (477)
                       +         ++++|  .+..|   ..+++|+.|++++|.+++.   .+..+..+++|++|++++|++++..|..|..+
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence             1         33333  11122   2245667777777776652   23456667777777777777776666666666


Q ss_pred             ccccceeecCCCcCCcccCCCCCC
Q 038739          384 SDELLVLDLQGNNLPLSKGCESGE  407 (477)
Q Consensus       384 ~~~L~~L~Ls~N~l~~~~p~~~~~  407 (477)
                      + +|++|++++|++++..|.....
T Consensus       500 ~-~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          500 K-MMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             T-TCCEEECCSSCCCGGGGGGGTT
T ss_pred             c-CCCEEECCCCccCcCChhHhCc
Confidence            6 6777777777776666654443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.7e-45  Score=380.36  Aligned_cols=389  Identities=20%  Similarity=0.177  Sum_probs=312.9

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      |.+|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+.++++|++|++++|++.+.....+..++
T Consensus        74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  153 (606)
T 3t6q_A           74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE  153 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred             hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence            67899999999999999999988888999999999999999999987778889999999999999998864434455588


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCcc--EEEccCCcCc-----------------------------------------
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLE--KLDLSFNNFS-----------------------------------------  119 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~-----------------------------------------  119 (477)
                      +|++|++++|.+++..+..++.+++|+  +|++++|.++                                         
T Consensus       154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~  233 (606)
T 3t6q_A          154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG  233 (606)
T ss_dssp             TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred             ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence            899999988888766666666666666  5555555544                                         


Q ss_pred             ----------------------------------CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739          120 ----------------------------------GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN  165 (477)
Q Consensus       120 ----------------------------------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  165 (477)
                                                        +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus       234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred             hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence                                              333444777899999999999996 678889999999999999999


Q ss_pred             CCCcCCcCCCCCCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739          166 FSGDLLGPIGNLRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT  244 (477)
Q Consensus       166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  244 (477)
                      +++..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.......+..+++|++|++++|.+....
T Consensus       313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  392 (606)
T 3t6q_A          313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK  392 (606)
T ss_dssp             CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred             cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence            998888889999999999999999886554 4588999999999999999877632233888999999999999766543


Q ss_pred             ccCCccCcCcccEEEccCCCCCCc-c-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCc
Q 038739          245 KATSDTTSQKLKYIGLRSCNLTKF-P-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV  322 (477)
Q Consensus       245 ~~~~~~~~~~L~~L~L~~n~l~~~-p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  322 (477)
                      .... ..+++|++|++++|.++.. + ..+..+++|++|++++|++.+..|..+.  .+++|++|++++|++++......
T Consensus       393 ~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          393 TEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             TTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEECTTCBCGGGEECSS
T ss_pred             HHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEECCCCCCCccccccc
Confidence            3222 2577899999999999544 3 4588899999999999999988888887  89999999999999986321100


Q ss_pred             ccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccC
Q 038739          323 VLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKG  402 (477)
Q Consensus       323 ~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p  402 (477)
                             .....+++|+.|++++|++++..|..|+++++|+.|||++|++++..|..+..++ .| +|++++|++++..|
T Consensus       470 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          470 -------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YLNLASNHISIILP  540 (606)
T ss_dssp             -------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EEECCSSCCCCCCG
T ss_pred             -------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EEECcCCcccccCH
Confidence                   0112356788888888888887788888888888888888888888888888887 78 88888888877666


Q ss_pred             CC
Q 038739          403 CE  404 (477)
Q Consensus       403 ~~  404 (477)
                      ..
T Consensus       541 ~~  542 (606)
T 3t6q_A          541 SL  542 (606)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-46  Score=391.07  Aligned_cols=357  Identities=20%  Similarity=0.257  Sum_probs=276.2

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCC-----------------cccccc--CCCCCCEEEcccccCCccccccCCCCCCCCE
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGE-----------------LPVSVG--NLHSLEELDLSANFLSSEWPISIGNLSSLKE   62 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   62 (477)
                      ||+.|+++++|++|+|++|.+++.                 +|..+.  ++++|++|++++|++.+.+|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            577788888888888888888864                 777777  8888888888888888888888888888888


Q ss_pred             EecccCc-Ccc-cCCcccCCC------CCCCEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCccccCCCCC
Q 038739           63 LDLSQNR-FFG-ELPISMGNL------GSLKVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL  132 (477)
Q Consensus        63 L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  132 (477)
                      |++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|.++|.+| .+..+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            8888887 776 677766665      78888888888886 6776  78888888888888888887777 77777888


Q ss_pred             CEEEccCCCCcccCCccccCCCC-CcEEECCCCcCCCcCCcCCCCCC--CCCEEEccCCccccccchhhh-------cCC
Q 038739          133 KLLDLRSCGFWGKVPHSIGNFTQ-LQYLHLGSNNFSGDLLGPIGNLR--SLEAINVAKCNFSGQITSSLR-------NLS  202 (477)
Q Consensus       133 ~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~  202 (477)
                      ++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+++..|..+.       .++
T Consensus       356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            88888888776 67777777887 888888888887 5666666544  788888888888877777776       667


Q ss_pred             CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC------cCcccEEEccCCCCCCcchhhh--c
Q 038739          203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT------SQKLKYIGLRSCNLTKFPNFLQ--N  274 (477)
Q Consensus       203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~------~~~L~~L~L~~n~l~~~p~~l~--~  274 (477)
                      +|++|++++|.+.......  +..+++|+.|++++|.+..++.......      +++|++|++++|.++.+|..+.  .
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            8888888888887544433  5667788888888887765444332211      1278888888888887777665  7


Q ss_pred             CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739          275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS  354 (477)
Q Consensus       275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~  354 (477)
                      +++|+.|++++|++++ +|..+.  .+++|+.|++++|+.                            +++|++.+.+|.
T Consensus       512 l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~~----------------------------ls~N~l~~~~p~  560 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQRD----------------------------AQGNRTLREWPE  560 (636)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCBC----------------------------TTCCBCCCCCCT
T ss_pred             CCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCcc----------------------------cccCcccccChH
Confidence            7888888888888886 677766  678888888877652                            356889999999


Q ss_pred             hhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739          355 WICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL  399 (477)
Q Consensus       355 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  399 (477)
                      .++++++|++|||++|++ +.+|..+.  + +|++|++++|++..
T Consensus       561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~-~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDI-RKVNEKIT--P-NISVLDIKDNPNIS  601 (636)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--T-TCCEEECCSCTTCE
T ss_pred             HHhcCCCCCEEECCCCcC-CccCHhHh--C-cCCEEECcCCCCcc
Confidence            999999999999999999 58888765  5 99999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-45  Score=384.58  Aligned_cols=390  Identities=20%  Similarity=0.161  Sum_probs=249.5

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      +|..+.  +++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.+++..|..|+++
T Consensus        26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence            555554  577888888888877777677788888888888888777777777788888888888887776667777788


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc---
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ---  157 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~---  157 (477)
                      ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+.+|+   
T Consensus       104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l  183 (606)
T 3vq2_A          104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN  183 (606)
T ss_dssp             TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred             ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence            888888888887776666677778888888888887765 4577777778888888887777665555444333222   


Q ss_pred             -EEECCCCcCCCcCCc----------------------------------------------------------------
Q 038739          158 -YLHLGSNNFSGDLLG----------------------------------------------------------------  172 (477)
Q Consensus       158 -~L~l~~n~l~~~~~~----------------------------------------------------------------  172 (477)
                       +|++++|.+++..+.                                                                
T Consensus       184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  263 (606)
T 3vq2_A          184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI  263 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred             ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence             344444443322211                                                                


Q ss_pred             --------------------------------------CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcC
Q 038739          173 --------------------------------------PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY  214 (477)
Q Consensus       173 --------------------------------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  214 (477)
                                                            .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus       264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG  340 (606)
T ss_dssp             EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred             hheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence                                                  223334445555555554 2333 22 445555555555533


Q ss_pred             ccccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCC
Q 038739          215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVP  293 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p  293 (477)
                      .+..    .+..+++|++|++++|.+...+..+.. ..+++|++|++++|.++.+|..+..+++|++|++++|++.+..|
T Consensus       341 ~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~  416 (606)
T 3vq2_A          341 SISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE  416 (606)
T ss_dssp             CEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred             ccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC
Confidence            3222    155677888888888866554322222 25667778888777777777667777777777777777776666


Q ss_pred             -ccCCcccCCCCCeEEecCCcccccCCCCc---------ccCCC--CC-CCC---CCCCccceeecCCCcCccCCChhhh
Q 038739          294 -KWLLDPNMQNLNGFNFSHNLLTGFDQHPV---------VLPGN--KG-PLP---VPPPGTITYLASNNSLTGEIPSWIC  357 (477)
Q Consensus       294 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~l~~n--~~-~~~---~~~~~l~~L~ls~n~l~~~~p~~~~  357 (477)
                       ..+.  .+++|+.|++++|++++..+..+         ++++|  .+ .+|   ..+++|+.|++++|++++..|..++
T Consensus       417 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          417 FSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence             4454  67777777777777776554432         23333  11 112   2345666666666666666666666


Q ss_pred             ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739          358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE  404 (477)
Q Consensus       358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~  404 (477)
                      ++++|++|+|++|++++.+|..|..++ +|++|++++|+++ .+|..
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESC
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHh
Confidence            666666666666666666666666666 6666666666665 44443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.3e-45  Score=381.03  Aligned_cols=390  Identities=21%  Similarity=0.170  Sum_probs=260.9

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      |.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+++++
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            45789999999999999999988888999999999999999999988899999999999999999999877778899999


Q ss_pred             CCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCC---------------------------CCCE
Q 038739           83 SLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS---------------------------SLKL  134 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------~L~~  134 (477)
                      +|++|++++|.+.+ .+|..++++++|++|++++|++++..+..++.++                           +|++
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~  208 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE  208 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence            99999999999976 5689999999999999999999876665554333                           3334


Q ss_pred             EEccCCCCc-----------------------------------------------------------------------
Q 038739          135 LDLRSCGFW-----------------------------------------------------------------------  143 (477)
Q Consensus       135 L~L~~n~~~-----------------------------------------------------------------------  143 (477)
                      |++++|.+.                                                                       
T Consensus       209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~  288 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS  288 (606)
T ss_dssp             EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred             eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence            444443321                                                                       


Q ss_pred             ---------ccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcC
Q 038739          144 ---------GKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY  214 (477)
Q Consensus       144 ---------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  214 (477)
                               ..+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+
T Consensus       289 ~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence                     0111 344556777777777777 3455 23 5556666666555333222  334455555555555555


Q ss_pred             ccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCcccccC
Q 038739          215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQGKV  292 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~~~~  292 (477)
                      .+.......+..+++|++|++++|.+...+  .....+++|++|++++|.+..++  ..+..+++|++|++++|++.+..
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             CCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence            444211112444555555555555433322  11113344445555544443322  23444444444444444444444


Q ss_pred             CccCCcccCCCCCeEEecCCccccc-CCCCc---------ccCCC--CCCC---CCCCCccceeecCCCcCccCCChhhh
Q 038739          293 PKWLLDPNMQNLNGFNFSHNLLTGF-DQHPV---------VLPGN--KGPL---PVPPPGTITYLASNNSLTGEIPSWIC  357 (477)
Q Consensus       293 p~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~---------~l~~n--~~~~---~~~~~~l~~L~ls~n~l~~~~p~~~~  357 (477)
                      |..+.  .+++|++|++++|++++. .+..+         ++++|  .+..   ...+++|+.|++++|++++.+|..++
T Consensus       441 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          441 DGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             TTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             hhhhc--CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence            44443  444444444444444431 12111         33333  1111   23468999999999999999999999


Q ss_pred             ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCC
Q 038739          358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC  403 (477)
Q Consensus       358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~  403 (477)
                      ++++|++|||++|+++ .+|..+..++++|++|++++|++.+..+-
T Consensus       519 ~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          519 QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999 67877988874699999999999876653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-45  Score=387.18  Aligned_cols=376  Identities=18%  Similarity=0.262  Sum_probs=324.3

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEccccc--------------------------------------------
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF--------------------------------------------   45 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------------------------------------   45 (477)
                      .+++.|+|+++.+.|.+|.+++++++|++|+|++|.                                            
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            478999999999999999999999999999999884                                            


Q ss_pred             ----------------------------------CCccccccCCCCCCCCEEecccCcCccc-----------------C
Q 038739           46 ----------------------------------LSSEWPISIGNLSSLKELDLSQNRFFGE-----------------L   74 (477)
Q Consensus        46 ----------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~   74 (477)
                                                        +++ +|..++++++|++|++++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                              334 778899999999999999999985                 8


Q ss_pred             CcccC--CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCc-CcC-CCCccccCC------CCCCEEEccCCCCcc
Q 038739           75 PISMG--NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN-FSG-EFPWSTGNF------SSLKLLDLRSCGFWG  144 (477)
Q Consensus        75 ~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~  144 (477)
                      |..++  ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            99999  99999999999999999999999999999999999998 988 788888776      99999999999997 


Q ss_pred             cCCc--cccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC-CCEEeCcCCcCccccchh
Q 038739          145 KVPH--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-LTALDLAQNSYRGMIELD  221 (477)
Q Consensus       145 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~  221 (477)
                      .+|.  .++.+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+... +..
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chh
Confidence            7888  89999999999999999998888 8999999999999999998 78888999999 99999999999844 333


Q ss_pred             hhhcC--CCCCCEEeCCCCCCccccccCCc------cCcCcccEEEccCCCCCCcchh-hhcCCCcCEEeccCCcccccC
Q 038739          222 VLLTS--WKNLEFLGLSLNRLSVLTKATSD------TTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSDNRIQGKV  292 (477)
Q Consensus       222 ~~~~~--~~~L~~L~ls~n~i~~~~~~~~~------~~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~i~~~~  292 (477)
                        +..  +++|+.|++++|.+.........      ..+++|++|++++|.++.+|.. +..+++|++|++++|+++ .+
T Consensus       396 --~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i  472 (636)
T 4eco_A          396 --FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI  472 (636)
T ss_dssp             --CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred             --hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence              343  45899999999987654322111      1456899999999999999855 556999999999999999 66


Q ss_pred             CccCCcccC-------CCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeE
Q 038739          293 PKWLLDPNM-------QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESL  365 (477)
Q Consensus       293 p~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~L  365 (477)
                      |..... ..       ++|+.|++++|+++.+. ..+        ....+++|+.|++++|++++ +|..+..+++|+.|
T Consensus       473 ~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~--------~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          473 PKNSLK-DENENFKNTYLLTSIDLRFNKLTKLS-DDF--------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             CSSSSE-ETTEECTTGGGCCEEECCSSCCCBCC-GGG--------STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             CHHHhc-cccccccccCCccEEECcCCcCCccC-hhh--------hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence            665441 22       29999999999998532 211        00257899999999999998 89999999999999


Q ss_pred             eC------CCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739          366 VL------SHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG  406 (477)
Q Consensus       366 dL------s~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~  406 (477)
                      +|      ++|++.+.+|..+..++ +|++|++++|++ +.+|....
T Consensus       542 ~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          542 GIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             ECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCC
T ss_pred             ECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC-CccCHhHh
Confidence            99      56888999999999998 999999999999 88887643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-44  Score=374.80  Aligned_cols=391  Identities=20%  Similarity=0.201  Sum_probs=263.0

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ||+.+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|++++..+..|+++
T Consensus        20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence            566554  688888998888887778888888888899988888888777888888888888888888887777778888


Q ss_pred             CCCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCCC-----
Q 038739           82 GSLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT-----  154 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-----  154 (477)
                      ++|++|++++|++++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..++     
T Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            888888888888875 356678888888888888887443444 5788888888888888888777777666554     


Q ss_pred             -------------------CCcEEECCCCcCCCcC--C-cCCCCCCCCCEEEccCCccccccch----hhhc--------
Q 038739          155 -------------------QLQYLHLGSNNFSGDL--L-GPIGNLRSLEAINVAKCNFSGQITS----SLRN--------  200 (477)
Q Consensus       155 -------------------~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~--------  200 (477)
                                         +|++|++++|.+++..  + .....+++|+.|++++|.+++..+.    .+..        
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~  257 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE  257 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence                               4555555555554321  0 1111233333333333333221111    1111        


Q ss_pred             ---------------------------------------------------CCCCCEEeCcCCcCccccchhhhhcCCCC
Q 038739          201 ---------------------------------------------------LSQLTALDLAQNSYRGMIELDVLLTSWKN  229 (477)
Q Consensus       201 ---------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  229 (477)
                                                                         .++|+.|++++|.+..... . .+..+++
T Consensus       258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~-~-~~~~l~~  335 (549)
T 2z81_A          258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC-S-FSQHLKS  335 (549)
T ss_dssp             EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-H-HHHHCTT
T ss_pred             cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH-H-HHhcCcc
Confidence                                                               2344445555554442221 1 1346788


Q ss_pred             CCEEeCCCCCCccccc--cCCccCcCcccEEEccCCCCCCcc---hhhhcCCCcCEEeccCCcccccCCccCCcccCCCC
Q 038739          230 LEFLGLSLNRLSVLTK--ATSDTTSQKLKYIGLRSCNLTKFP---NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNL  304 (477)
Q Consensus       230 L~~L~ls~n~i~~~~~--~~~~~~~~~L~~L~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L  304 (477)
                      |++|++++|.+.....  ......+++|++|++++|.++.++   ..+..+++|++|++++|+++ .+|..+.  .+++|
T Consensus       336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~~~~L  412 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--WPEKM  412 (549)
T ss_dssp             CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC--CCTTC
T ss_pred             ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc--ccccc
Confidence            8888888886654211  111235678888888888887775   35778888888888888888 5677666  67888


Q ss_pred             CeEEecCCcccccCCC------CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739          305 NGFNFSHNLLTGFDQH------PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP  377 (477)
Q Consensus       305 ~~L~Ls~N~l~~~~~~------~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  377 (477)
                      ++|++++|+++.....      .+++++| ...++..+++|++|++++|+++ .+|. ...+++|++|||++|++++.+|
T Consensus       413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence            8888888888754321      1244454 2233445667777777777776 5554 3567777777777777776666


Q ss_pred             chhhhcccccceeecCCCcCCcccC
Q 038739          378 QCLGNFSDELLVLDLQGNNLPLSKG  402 (477)
Q Consensus       378 ~~l~~l~~~L~~L~Ls~N~l~~~~p  402 (477)
                      ..+..++ +|++|++++|++.+.+|
T Consensus       491 ~~~~~l~-~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          491 GIFDRLT-SLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TGGGGCT-TCCEEECCSSCBCCCHH
T ss_pred             HHHhcCc-ccCEEEecCCCccCCCc
Confidence            6677776 77777777777766555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=391.22  Aligned_cols=390  Identities=22%  Similarity=0.208  Sum_probs=239.7

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCc-cccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcc--cC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGEL-PVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPIS--MG   79 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~   79 (477)
                      |.+|+++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++..|..  +.
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            445566666666666666443333 555666666666666666666555666666666666666666665544433  56


Q ss_pred             CCCCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccC--------------------------CCC-
Q 038739           80 NLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGN--------------------------FSS-  131 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------l~~-  131 (477)
                      ++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..                          +++ 
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence            66666666666666654433 35566666666666666555443333221                          111 


Q ss_pred             -----CCEEEccCCCCcccCCcccc------------------------------------C--CCCCcEEECCCCcCCC
Q 038739          132 -----LKLLDLRSCGFWGKVPHSIG------------------------------------N--FTQLQYLHLGSNNFSG  168 (477)
Q Consensus       132 -----L~~L~L~~n~~~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~l~~  168 (477)
                           |++|++++|.+.+..+..+.                                    .  .++|+.|++++|.+.+
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                 44555555444332222111                                    1  1467777777777777


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..++...+
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~~  358 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQDQTF  358 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred             cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH--hcCCCCCCEEECCCCCCCccChhhh
Confidence            77777788888888888888887777777888888888888888877665544  6777788888888876655543322


Q ss_pred             ccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCcc----------------------CCcccCCCCCe
Q 038739          249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW----------------------LLDPNMQNLNG  306 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~----------------------~~~~~l~~L~~  306 (477)
                       ..+++|++|++++|.++.++.    +++|+.|++++|+++ .+|..                      +.  .+++|+.
T Consensus       359 -~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~--~l~~L~~  430 (844)
T 3j0a_A          359 -KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLL--RVPHLQI  430 (844)
T ss_dssp             -CSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHT--TCTTCCE
T ss_pred             -cCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhh--cCCccce
Confidence             245667777777776655432    334444444444433 11111                      11  4566666


Q ss_pred             EEecCCcccccCCCC----------cccCCC-C------CC---CCCCCCccceeecCCCcCccCCChhhhccCCCCeEe
Q 038739          307 FNFSHNLLTGFDQHP----------VVLPGN-K------GP---LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLV  366 (477)
Q Consensus       307 L~Ls~N~l~~~~~~~----------~~l~~n-~------~~---~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~Ld  366 (477)
                      |++++|++++..+..          +++++| .      +.   ....+++|+.|++++|.+++..|..|.++++|+.||
T Consensus       431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  510 (844)
T 3j0a_A          431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS  510 (844)
T ss_dssp             EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred             eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence            666666666433221          133333 1      11   122357888889999999888888888899999999


Q ss_pred             CCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739          367 LSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES  405 (477)
Q Consensus       367 Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  405 (477)
                      |++|++++..|..+.  + +|++|++++|++++.+|..+
T Consensus       511 Ls~N~l~~l~~~~~~--~-~L~~L~Ls~N~l~~~~~~~~  546 (844)
T 3j0a_A          511 LNSNRLTVLSHNDLP--A-NLEILDISRNQLLAPNPDVF  546 (844)
T ss_dssp             EESCCCSSCCCCCCC--S-CCCEEEEEEECCCCCCSCCC
T ss_pred             CCCCCCCccChhhhh--c-cccEEECCCCcCCCCChhHh
Confidence            999999876665554  4 78888888888888777543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-44  Score=386.49  Aligned_cols=377  Identities=18%  Similarity=0.239  Sum_probs=319.1

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEc-ccccCCcc---------------------------------------
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDL-SANFLSSE---------------------------------------   49 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~---------------------------------------   49 (477)
                      .+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46889999999999999999999999999999 66644322                                       


Q ss_pred             -------------------------------------ccccCCCCCCCCEEecccCcCcc-----------------cCC
Q 038739           50 -------------------------------------WPISIGNLSSLKELDLSQNRFFG-----------------ELP   75 (477)
Q Consensus        50 -------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~   75 (477)
                                                           +|..++++++|++|+|++|++++                 .+|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                                                 77889999999999999999997                 388


Q ss_pred             cccC--CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCc-CcC-CCCccccCC-------CCCCEEEccCCCCcc
Q 038739           76 ISMG--NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN-FSG-EFPWSTGNF-------SSLKLLDLRSCGFWG  144 (477)
Q Consensus        76 ~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~~~~  144 (477)
                      ..++  ++++|++|++++|++.+.+|..+.++++|++|++++|+ +++ .+|..++.+       ++|++|++++|.+. 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            8888  99999999999999999999999999999999999998 887 778655544       59999999999997 


Q ss_pred             cCCc--cccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC-CCEEeCcCCcCccccchh
Q 038739          145 KVPH--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-LTALDLAQNSYRGMIELD  221 (477)
Q Consensus       145 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~  221 (477)
                      .+|.  .+.++++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+... +..
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~  637 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNI  637 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSC
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chh
Confidence            7888  8999999999999999999 677 8999999999999999998 78888999999 99999999999844 333


Q ss_pred             hhhcCC--CCCCEEeCCCCCCccccc-cCC---ccCcCcccEEEccCCCCCCcchhh-hcCCCcCEEeccCCcccccCCc
Q 038739          222 VLLTSW--KNLEFLGLSLNRLSVLTK-ATS---DTTSQKLKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGKVPK  294 (477)
Q Consensus       222 ~~~~~~--~~L~~L~ls~n~i~~~~~-~~~---~~~~~~L~~L~L~~n~l~~~p~~l-~~~~~L~~L~Ls~n~i~~~~p~  294 (477)
                        +...  ++|+.|++++|.+..... .+.   ....++|+.|++++|.++.+|..+ ..+++|+.|+|++|+++ .+|.
T Consensus       638 --~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          638 --FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             --CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             --hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence              4444  459999999997754322 111   114458999999999999999665 48999999999999999 6666


Q ss_pred             cCCcc------cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCC
Q 038739          295 WLLDP------NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLS  368 (477)
Q Consensus       295 ~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs  368 (477)
                      .+...      .+++|+.|+|++|+++.+ +..+        ....+++|+.|++++|++++ +|..+..+++|+.|+|+
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l--------~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDF--------RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGG--------STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             HHhccccccccccCCccEEECCCCCCccc-hHHh--------hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            55421      123899999999999843 2211        01256899999999999997 89999999999999997


Q ss_pred             C------CcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739          369 H------NNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG  406 (477)
Q Consensus       369 ~------N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~  406 (477)
                      +      |++.+.+|..+..++ +|++|+|++|++ +.+|....
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCCcccccccccChHHHhcCC-CCCEEECCCCCC-CccCHhhc
Confidence            6      888999999999998 999999999999 88987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=373.19  Aligned_cols=389  Identities=21%  Similarity=0.194  Sum_probs=267.7

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ||..+.  +++++|++++|.+++..+..|.++++|++|++++|++++..+.+|.++++|++|++++|++++..|..|.++
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            555443  467888888888877667777888888888888888777667777788888888888888776666777788


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC----
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL----  156 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----  156 (477)
                      ++|++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|    
T Consensus       100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred             cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence            888888888887765555567778888888888887775 357777777888888888777766655556555555    


Q ss_pred             cEEECCCCcCCCcCC-----------------------------------------------------------------
Q 038739          157 QYLHLGSNNFSGDLL-----------------------------------------------------------------  171 (477)
Q Consensus       157 ~~L~l~~n~l~~~~~-----------------------------------------------------------------  171 (477)
                      +.+++++|.+++..+                                                                 
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  259 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI  259 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred             hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence            566666655443322                                                                 


Q ss_pred             ----------------cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh--------------
Q 038739          172 ----------------GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD--------------  221 (477)
Q Consensus       172 ----------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------------  221 (477)
                                      ..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+.......              
T Consensus       260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred             hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence                            22333455666666666555 344444444 4555555554443221100              


Q ss_pred             ---hhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCc-cC
Q 038739          222 ---VLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPK-WL  296 (477)
Q Consensus       222 ---~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~-~~  296 (477)
                         .....+++|++|++++|.+...+..+.. ..+++|++|++++|.++.++..+..+++|++|++++|++.+..+. .+
T Consensus       338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh
Confidence               0015678899999999977655422222 256789999999998877776688888999999999988877663 44


Q ss_pred             CcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc-cCCChhhhccCCCCeEeCCCCcCccc
Q 038739          297 LDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT-GEIPSWICNLNILESLVLSHNNLSGL  375 (477)
Q Consensus       297 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~  375 (477)
                      .  .+++|++|++++|++++..+..+          ..+++|+.|++++|.++ +.+|..++.+++|++|++++|++++.
T Consensus       418 ~--~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~  485 (570)
T 2z63_A          418 L--SLRNLIYLDISHTHTRVAFNGIF----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  485 (570)
T ss_dssp             T--TCTTCCEEECTTSCCEECCTTTT----------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             h--cCCCCCEEeCcCCcccccchhhh----------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence            4  78889999999998887654332          33567777777777776 46777777777777777777777776


Q ss_pred             CCchhhhcccccceeecCCCcCCcccCCCCCC
Q 038739          376 LPQCLGNFSDELLVLDLQGNNLPLSKGCESGE  407 (477)
Q Consensus       376 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~  407 (477)
                      .|..|..++ +|++|++++|++++..|..+..
T Consensus       486 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          486 SPTAFNSLS-SLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             CTTTTTTCT-TCCEEECCSSCCSCCCTTTTTT
T ss_pred             Chhhhhccc-CCCEEeCCCCcCCCCCHHHhhc
Confidence            677777776 7777777777777665554433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-44  Score=371.35  Aligned_cols=378  Identities=19%  Similarity=0.202  Sum_probs=309.1

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      .+.++.++.+++ .+|..+.  +++++|++++|++++..+.+|.++++|++|++++|++++..+..|+++++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            467888888887 5665553  5899999999999988888999999999999999999988888999999999999999


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCcEEECCCCcCCCcC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      |++++..+..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            99988888899999999999999999997666679999999999999999977 46899999999999999999999877


Q ss_pred             CcCCCCCCCC----CEEEccCCccccccc---------------------------------------------------
Q 038739          171 LGPIGNLRSL----EAINVAKCNFSGQIT---------------------------------------------------  195 (477)
Q Consensus       171 ~~~l~~l~~L----~~L~l~~n~l~~~~~---------------------------------------------------  195 (477)
                      +..+..+++|    +.+++++|.+++..+                                                   
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  245 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  245 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence            7777777777    778887776654433                                                   


Q ss_pred             ------------------------------hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          196 ------------------------------SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       196 ------------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                                                    ..+..+++|++|++++|.+.+....   +..+ +|+.|++++|.+..++.
T Consensus       246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~~n~~~~l~~  321 (570)
T 2z63_A          246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNF-GWQHLELVNCKFGQFPT  321 (570)
T ss_dssp             CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC---CSCC-CCSEEEEESCBCSSCCB
T ss_pred             cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh---hccC-CccEEeeccCcccccCc
Confidence                                          3344456677777777766543321   3334 56666666655443332


Q ss_pred             cC------------------CccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccCCcccCCCC
Q 038739          246 AT------------------SDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNL  304 (477)
Q Consensus       246 ~~------------------~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L  304 (477)
                      ..                  ....+++|++|++++|.++.+   |..+..+++|++|++++|++.+..+. +.  .+++|
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L  398 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQL  398 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTC
T ss_pred             ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCC
Confidence            11                  003567899999999999765   67889999999999999999966554 65  89999


Q ss_pred             CeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc-ccCCchhhhc
Q 038739          305 NGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQCLGNF  383 (477)
Q Consensus       305 ~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l  383 (477)
                      +.|++++|++++..+..         ....+++|+.|++++|.+++..|..+.++++|++|++++|+++ +.+|..+..+
T Consensus       399 ~~L~l~~n~l~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  469 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFS---------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  469 (570)
T ss_dssp             CEEECTTSEEESCTTSC---------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             CEEEccCCccccccchh---------hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence            99999999998764321         1235689999999999999999999999999999999999998 5799999999


Q ss_pred             ccccceeecCCCcCCcccCCCCCCCC
Q 038739          384 SDELLVLDLQGNNLPLSKGCESGEAP  409 (477)
Q Consensus       384 ~~~L~~L~Ls~N~l~~~~p~~~~~~~  409 (477)
                      + +|++|++++|++++..|..+...+
T Consensus       470 ~-~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          470 R-NLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             T-TCCEEECTTSCCCEECTTTTTTCT
T ss_pred             c-CCCEEECCCCccccCChhhhhccc
Confidence            8 999999999999998887765544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.5e-43  Score=370.17  Aligned_cols=396  Identities=24%  Similarity=0.216  Sum_probs=250.8

Q ss_pred             ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739            4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS   83 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   83 (477)
                      ..|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+.+|+++++|++|++++|++++..|..|+++++
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            35777888888888888888777777888888888888888887665556788888888888888877666677778888


Q ss_pred             CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcccc--CCCCCCEEEccCCCCcccCCc-------------
Q 038739           84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG--NFSSLKLLDLRSCGFWGKVPH-------------  148 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~-------------  148 (477)
                      |++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..|.             
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence            88888888877777777777777777777777777655444332  335555555555555444333             


Q ss_pred             --------------------------------------cccCCC--CCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739          149 --------------------------------------SIGNFT--QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC  188 (477)
Q Consensus       149 --------------------------------------~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  188 (477)
                                                            .+..++  +|++|++++|.+++..+..+..+++|++|++++|
T Consensus       203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (680)
T 1ziw_A          203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN  282 (680)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence                                                  333332  2555555555555555555555666666666666


Q ss_pred             ccccccchhhhcCCCCCEEeCcCCcCccccc-----h--hhhhcCCCCCCEEeCCCCCCccccccCCc------------
Q 038739          189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIE-----L--DVLLTSWKNLEFLGLSLNRLSVLTKATSD------------  249 (477)
Q Consensus       189 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~------------  249 (477)
                      .+++..+..+..+++|+.|++++|...+...     .  ...+..+++|++|++++|.+.......+.            
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  362 (680)
T 1ziw_A          283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN  362 (680)
T ss_dssp             CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred             ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence            5555444444444444444444332221000     0  00134455555555555544433221110            


Q ss_pred             --------------c-CcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCC-ccCCcccCCCCCeEEecCC
Q 038739          250 --------------T-TSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVP-KWLLDPNMQNLNGFNFSHN  312 (477)
Q Consensus       250 --------------~-~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N  312 (477)
                                    . ..+.|+.|++++|.++.+ |..+..+++|++|++++|++.+.+| ..+.  .+++|++|++++|
T Consensus       363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYN  440 (680)
T ss_dssp             CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT--TCTTCCEEECCSC
T ss_pred             CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc--CcccccEEecCCC
Confidence                          0 123566666677777554 4567777888888888888876665 3444  6778888888888


Q ss_pred             cccccCCCCc---------ccCCC----CCCCCC---CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccC
Q 038739          313 LLTGFDQHPV---------VLPGN----KGPLPV---PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL  376 (477)
Q Consensus       313 ~l~~~~~~~~---------~l~~n----~~~~~~---~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~  376 (477)
                      ++++..+..+         ++.+|    .+.+|.   .+++|+.|++++|++++..+..|.++++|++|++++|++++..
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence            8776654433         33333    123333   3467888888888888777777888888888888888887542


Q ss_pred             C--------chhhhcccccceeecCCCcCCcccCC
Q 038739          377 P--------QCLGNFSDELLVLDLQGNNLPLSKGC  403 (477)
Q Consensus       377 p--------~~l~~l~~~L~~L~Ls~N~l~~~~p~  403 (477)
                      +        ..|..++ +|++|++++|+++ .+|.
T Consensus       521 ~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~-~i~~  553 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLS-HLHILNLESNGFD-EIPV  553 (680)
T ss_dssp             STTSTTSCCCTTTTCT-TCCEEECCSSCCC-CCCT
T ss_pred             hhhccCCcchhhcCCC-CCCEEECCCCCCC-CCCH
Confidence            2        2367777 8888888888887 4554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-43  Score=355.68  Aligned_cols=357  Identities=19%  Similarity=0.144  Sum_probs=215.1

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccC-CcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL-PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD  112 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  112 (477)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            34445555554444444444444445555555544443222 33444444555555555444444444444444555555


Q ss_pred             ccCCcCcCCCCcc--ccCCCCCCEEEccCCCCcccCCcc-ccCCCCCcEEECCCCcCCCcCCcCCCCC--CCCCEEEccC
Q 038739          113 LSFNNFSGEFPWS--TGNFSSLKLLDLRSCGFWGKVPHS-IGNFTQLQYLHLGSNNFSGDLLGPIGNL--RSLEAINVAK  187 (477)
Q Consensus       113 Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~  187 (477)
                      +++|.+++.++..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            5554444322222  444444555555544444443333 4444455555555554444444444333  3444455554


Q ss_pred             Cccccccchh--------hhcCCCCCEEeCcCCcCccccchhh-hhcCCCCCCEEeCCCCCCcc----------ccccCC
Q 038739          188 CNFSGQITSS--------LRNLSQLTALDLAQNSYRGMIELDV-LLTSWKNLEFLGLSLNRLSV----------LTKATS  248 (477)
Q Consensus       188 n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~i~~----------~~~~~~  248 (477)
                      |.+.+..+..        +..+++|++|++++|.+.+..+... .....++|+.|++++|.+..          ......
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence            4444322211        1133445555555555444333220 01112445555555442211          111111


Q ss_pred             cc-CcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCC
Q 038739          249 DT-TSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPG  326 (477)
Q Consensus       249 ~~-~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  326 (477)
                      .. ..++|++|++++|.++.+ |..+..+++|++|++++|++++..|..+.  .+++|+.|++++|++++..+..+    
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~----  343 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMF----  343 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGG----
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCCccCCcChhHh----
Confidence            11 346899999999999665 67788999999999999999988888887  89999999999999987654332    


Q ss_pred             CCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCC
Q 038739          327 NKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC  403 (477)
Q Consensus       327 n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~  403 (477)
                            ..+++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..++ +|++|++++|++++.+|.
T Consensus       344 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          344 ------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             ------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred             ------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcccCCCc
Confidence                  3467899999999999998899999999999999999999977677788898 999999999999998884

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-42  Score=369.05  Aligned_cols=398  Identities=20%  Similarity=0.162  Sum_probs=309.0

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +||..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|++
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            3677665  79999999999999888888999999999999999999998999999999999999999999666667999


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc--CCCCCcE
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG--NFTQLQY  158 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~  158 (477)
                      +++|++|++++|++++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|++
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            99999999999999887778999999999999999999988888999999999999999999887776554  5689999


Q ss_pred             EECCCCcCCCcCCcCCCCC---------------------------CCCCEEEccCCccccccchhhhcCCC--CCEEeC
Q 038739          159 LHLGSNNFSGDLLGPIGNL---------------------------RSLEAINVAKCNFSGQITSSLRNLSQ--LTALDL  209 (477)
Q Consensus       159 L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L  209 (477)
                      |++++|.+++..+..+..+                           ++|+.|++++|.+++..+.++..++.  |++|++
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            9999999988777666544                           45677778888887777777777654  899999


Q ss_pred             cCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC------Ccch----hhhcCCCcC
Q 038739          210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT------KFPN----FLQNQHHLR  279 (477)
Q Consensus       210 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~p~----~l~~~~~L~  279 (477)
                      ++|.+.+..+..  +..+++|++|++++|.+........ ..+++|++|++++|...      .+|.    .+..+++|+
T Consensus       256 s~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          256 SYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             TTSCCCEECTTT--TTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred             CCCCcCccCccc--ccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence            998888776654  7788889999999887665433222 25678888888876543      3442    567788888


Q ss_pred             EEeccCCcccccCCccCCcccCCCCCeEEecCCcccccC--CC-----------CcccCCC--CCC---CCCCCCcccee
Q 038739          280 FMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD--QH-----------PVVLPGN--KGP---LPVPPPGTITY  341 (477)
Q Consensus       280 ~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~--~~-----------~~~l~~n--~~~---~~~~~~~l~~L  341 (477)
                      +|++++|++.+..+..+.  .+++|++|++++|.++...  ..           .+++++|  .+.   ....+++|+.|
T Consensus       333 ~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  410 (680)
T 1ziw_A          333 HLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL  410 (680)
T ss_dssp             EEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             EEECCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence            888888888887777776  7888888888888654221  11           1133333  111   12235567777


Q ss_pred             ecCCCcCccCCC-hhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCC--cccCCCCC
Q 038739          342 LASNNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLP--LSKGCESG  406 (477)
Q Consensus       342 ~ls~n~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~--~~~p~~~~  406 (477)
                      ++++|.+++.+| ..+.++++|++|++++|++++..+..|..++ +|++|++++|.+.  +.+|..+.
T Consensus       411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTT
T ss_pred             eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc-ccccchhccccccccccCCcccc
Confidence            777777776555 5667777777777777777766666777776 7777777777765  45555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-43  Score=379.35  Aligned_cols=395  Identities=23%  Similarity=0.277  Sum_probs=294.5

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccc-cccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW-PISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      ||.   -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|..|.+
T Consensus        19 vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           19 VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            565   3578999999999999888999999999999999999665555 788999999999999999999888999999


Q ss_pred             CCCCCEEeCcCCCCCCccccc--ccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCC--CC
Q 038739           81 LGSLKVLDLSQNGYFGELPTS--IRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNF--TQ  155 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~  155 (477)
                      +++|++|++++|.+++..+..  +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..+  ++
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~  175 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT  175 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence            999999999999998866654  9999999999999999987655 578999999999999999988888877766  77


Q ss_pred             CcEEECCCCcCCCcCCcCCCCCCC------CCEEEccCCccccccchhhhc-----------------------------
Q 038739          156 LQYLHLGSNNFSGDLLGPIGNLRS------LEAINVAKCNFSGQITSSLRN-----------------------------  200 (477)
Q Consensus       156 L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~-----------------------------  200 (477)
                      |+.|++++|.+.+..+..+..+++      |++|++++|.+++..+..+..                             
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            888888888877766665555544      777777777655433332221                             


Q ss_pred             ---------CCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc-ch
Q 038739          201 ---------LSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF-PN  270 (477)
Q Consensus       201 ---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~  270 (477)
                               .++|+.|++++|.+.+..+..  +..+++|+.|++++|.+.......+ ..+++|++|++++|.++.+ |.
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCC--SSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSC
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhh--hhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHH
Confidence                     256777777777776655444  6667777777777776654433222 2456677777777777554 45


Q ss_pred             hhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCC----C-------------------------
Q 038739          271 FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH----P-------------------------  321 (477)
Q Consensus       271 ~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~-------------------------  321 (477)
                      .+..+++|++|++++|++.+..+..+.  .+++|+.|++++|.+++....    .                         
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~  410 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE  410 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence            666777777777777777655555555  566777777777666543210    0                         


Q ss_pred             --------------------cccCCC-C-----CCCCCCCCccceeecCCCcCc-----cCCChhhhccCCCCeEeCCCC
Q 038739          322 --------------------VVLPGN-K-----GPLPVPPPGTITYLASNNSLT-----GEIPSWICNLNILESLVLSHN  370 (477)
Q Consensus       322 --------------------~~l~~n-~-----~~~~~~~~~l~~L~ls~n~l~-----~~~p~~~~~l~~L~~LdLs~N  370 (477)
                                          +++++| .     +..+...++|+.|++++|.++     +..+..|.++++|+.|||++|
T Consensus       411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN  490 (844)
T ss_dssp             CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred             CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence                                022222 0     112223456666666666665     334456788999999999999


Q ss_pred             cCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739          371 NLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES  405 (477)
Q Consensus       371 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  405 (477)
                      ++++..|..|..++ +|++|+|++|++++..|...
T Consensus       491 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~  524 (844)
T 3j0a_A          491 YLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDL  524 (844)
T ss_dssp             HHTTCCTTSSSSCC-SCSEEEEESCCCSSCCCCCC
T ss_pred             cccccChhHccchh-hhheeECCCCCCCccChhhh
Confidence            99988888899998 99999999999987666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-43  Score=378.66  Aligned_cols=358  Identities=18%  Similarity=0.218  Sum_probs=298.0

Q ss_pred             CCccCCCCCCCCEEEccCCCCCC-----------------Ccccccc--CCCCCCEEEcccccCCccccccCCCCCCCCE
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQG-----------------ELPVSVG--NLHSLEELDLSANFLSSEWPISIGNLSSLKE   62 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   62 (477)
                      ||+.|+++++|++|+|++|.+++                 .+|..++  ++++|++|+|++|++.+.+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78899999999999999999998                 3888877  9999999999999999999999999999999


Q ss_pred             EecccCc-Ccc-cCCcccCC-------CCCCCEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCccccCCCC
Q 038739           63 LDLSQNR-FFG-ELPISMGN-------LGSLKVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSS  131 (477)
Q Consensus        63 L~Ls~n~-l~~-~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  131 (477)
                      |++++|+ +++ .+|..++.       +++|++|++++|+++ .+|.  .+.++++|++|++++|.++ .+| .+..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            9999998 887 67765544       459999999999997 7888  8999999999999999999 888 8999999


Q ss_pred             CCEEEccCCCCcccCCccccCCCC-CcEEECCCCcCCCcCCcCCCCCCC--CCEEEccCCccccccchh---hh--cCCC
Q 038739          132 LKLLDLRSCGFWGKVPHSIGNFTQ-LQYLHLGSNNFSGDLLGPIGNLRS--LEAINVAKCNFSGQITSS---LR--NLSQ  203 (477)
Q Consensus       132 L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~---l~--~l~~  203 (477)
                      |+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|++++|.+.+.+|..   +.  .+++
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            999999999997 78888999998 999999999998 67777776654  999999999998765532   22  3458


Q ss_pred             CCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc------CcCcccEEEccCCCCCCcchhhh--cC
Q 038739          204 LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT------TSQKLKYIGLRSCNLTKFPNFLQ--NQ  275 (477)
Q Consensus       204 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~------~~~~L~~L~L~~n~l~~~p~~l~--~~  275 (477)
                      |+.|++++|.+.......  +..+++|+.|++++|.+..++......      .+++|+.|++++|+++.+|..+.  .+
T Consensus       675 L~~L~Ls~N~L~~lp~~~--~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l  752 (876)
T 4ecn_A          675 ASTVTLSYNEIQKFPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL  752 (876)
T ss_dssp             EEEEECCSSCCCSCCHHH--HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred             cCEEEccCCcCCccCHHH--HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence            999999999998554432  668899999999999888655543322      22389999999999999998886  89


Q ss_pred             CCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChh
Q 038739          276 HHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSW  355 (477)
Q Consensus       276 ~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~  355 (477)
                      ++|+.|+|++|++++ +|..+.  .+++|+.|+|++|+                            ++++|++.+.+|..
T Consensus       753 ~~L~~L~Ls~N~L~~-lp~~l~--~L~~L~~L~Ls~N~----------------------------~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS-FPTQPL--NSSQLKAFGIRHQR----------------------------DAEGNRILRQWPTG  801 (876)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGG--GCTTCCEEECCCCB----------------------------CTTCCBCCCCCCTT
T ss_pred             CCcCEEEeCCCCCCc-cchhhh--cCCCCCEEECCCCC----------------------------CcccccccccChHH
Confidence            999999999999997 787777  89999999999875                            23557777777888


Q ss_pred             hhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739          356 ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       356 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                      ++++++|+.|+|++|++ +.+|..+.  + +|+.|+|++|++...-
T Consensus       802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~-~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSNDI-RKVDEKLT--P-QLYILDIADNPNISID  843 (876)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCCC--S-SSCEEECCSCTTCEEE
T ss_pred             HhcCCCCCEEECCCCCC-CccCHhhc--C-CCCEEECCCCCCCccC
Confidence            88888888888888888 57776654  4 7888888888775443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.8e-43  Score=358.88  Aligned_cols=370  Identities=21%  Similarity=0.200  Sum_probs=266.8

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +||..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|+++ .+|..  .
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence            3677666  89999999999999888889999999999999999999888889999999999999999998 56655  7


Q ss_pred             CCCCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCC--CEEEccCCCC--cccCCccccCC--
Q 038739           81 LGSLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL--KLLDLRSCGF--WGKVPHSIGNF--  153 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~l~~l--  153 (477)
                      +++|++|++++|++++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+  
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~  165 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT  165 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence            8999999999999987 478899999999999999999875   356667777  9999998888  55555555442  


Q ss_pred             ------------------------C-------------------------------------------------------
Q 038739          154 ------------------------T-------------------------------------------------------  154 (477)
Q Consensus       154 ------------------------~-------------------------------------------------------  154 (477)
                                              +                                                       
T Consensus       166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  245 (520)
T 2z7x_B          166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW  245 (520)
T ss_dssp             EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh
Confidence                                    2                                                       


Q ss_pred             --CCcEEECCCCcCCCcCCcCC-----CCCCCCCEEEccCCccccccc-hhhhcC---CCCCEEeCcCCcCccccchhhh
Q 038739          155 --QLQYLHLGSNNFSGDLLGPI-----GNLRSLEAINVAKCNFSGQIT-SSLRNL---SQLTALDLAQNSYRGMIELDVL  223 (477)
Q Consensus       155 --~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~  223 (477)
                        +|++|++++|.+++.+|..+     ..+++|+.++++.|.+  .+| ..+..+   .+|+.|++++|.+.....    
T Consensus       246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~----  319 (520)
T 2z7x_B          246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----  319 (520)
T ss_dssp             TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred             hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc----
Confidence              34444444444444444443     4444444444444444  122 222222   445666666655543221    


Q ss_pred             hcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCcc-CCcc
Q 038739          224 LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKW-LLDP  299 (477)
Q Consensus       224 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~  299 (477)
                      ...+++|++|++++|.+...... ....+++|++|++++|.++.+   |..+..+++|++|++++|++++.+|.. +.  
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--  396 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--  396 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--
T ss_pred             hhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--
Confidence            25677888888888866542221 112567788888888888743   456778888888888888888755554 43  


Q ss_pred             cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch
Q 038739          300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC  379 (477)
Q Consensus       300 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  379 (477)
                      .+++|+.|++++|++++..+..+            .++|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCL------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSC------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             cCccCCEEECcCCCCCcchhhhh------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence            67788888888888876433221            267888888888888 77877778888888888888888 45554


Q ss_pred             -hhhcccccceeecCCCcCCcccC
Q 038739          380 -LGNFSDELLVLDLQGNNLPLSKG  402 (477)
Q Consensus       380 -l~~l~~~L~~L~Ls~N~l~~~~p  402 (477)
                       +..++ +|++|++++|++++.++
T Consensus       463 ~~~~l~-~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          463 IFDRLT-SLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTTCT-TCCEEECCSSCBCCCHH
T ss_pred             HhccCC-cccEEECcCCCCcccCC
Confidence             77787 88888888888876544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.1e-41  Score=346.11  Aligned_cols=369  Identities=22%  Similarity=0.205  Sum_probs=240.7

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ||..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|+++ .+|..  .+
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l  120 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM  120 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence            454443  56667777777766666666666777777777777666666666666677777777777666 34443  56


Q ss_pred             CCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCccccCCCCC--CEEEccCCCC--cccCCccccCCC--
Q 038739           82 GSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL--KLLDLRSCGF--WGKVPHSIGNFT--  154 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~l~~l~--  154 (477)
                      ++|++|++++|++++. .|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+.  
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence            6677777777766542 345666666777777777666542   23333444  6666666666  444444443322  


Q ss_pred             ------------------------CCcEEECCCCcC----------------------------CCc----CCcCCCCCC
Q 038739          155 ------------------------QLQYLHLGSNNF----------------------------SGD----LLGPIGNLR  178 (477)
Q Consensus       155 ------------------------~L~~L~l~~n~l----------------------------~~~----~~~~l~~l~  178 (477)
                                              +|+.+++++|..                            .+.    .+.. ...+
T Consensus       198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~  276 (562)
T 3a79_B          198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPR  276 (562)
T ss_dssp             EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTS
T ss_pred             eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcc
Confidence                                    233333333210                            000    0000 0012


Q ss_pred             CCCEEEccCCccccccchhh-----hcC--------------------------CCCCEEeCcCCcCccccchhhhhcCC
Q 038739          179 SLEAINVAKCNFSGQITSSL-----RNL--------------------------SQLTALDLAQNSYRGMIELDVLLTSW  227 (477)
Q Consensus       179 ~L~~L~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~  227 (477)
                      +|++|++++|.+++.+|..+     ..+                          .+|++|++++|.+.....    ...+
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~l  352 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC----PPSP  352 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC----CSSC
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC----ccCC
Confidence            56666666666665555443     222                          456777777776643321    2677


Q ss_pred             CCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc---hhhhcCCCcCEEeccCCcccccCCcc-CCcccCCC
Q 038739          228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP---NFLQNQHHLRFMDLSDNRIQGKVPKW-LLDPNMQN  303 (477)
Q Consensus       228 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~~l~~  303 (477)
                      ++|++|++++|.+...... ....+++|++|++++|.++.++   ..+..+++|++|++++|++++.+|.. +.  .+++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~l~~  429 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--WAES  429 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--CCTT
T ss_pred             CCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--Cccc
Confidence            8899999999876642221 1235778999999999887654   45778899999999999998756654 44  7889


Q ss_pred             CCeEEecCCcccccCCCCcccCCCCCCCCCCC-CccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch-hh
Q 038739          304 LNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPP-PGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC-LG  381 (477)
Q Consensus       304 L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~-~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~  381 (477)
                      |+.|++++|++++..+.             .+ ++|+.|++++|+++ .+|..+..+++|++|||++|+++ .+|.. +.
T Consensus       430 L~~L~l~~n~l~~~~~~-------------~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  494 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR-------------CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD  494 (562)
T ss_dssp             CCEEECCSSCCCGGGGS-------------SCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred             CCEEECCCCCCCcchhh-------------hhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence            99999999988765332             23 68999999999998 67877779999999999999999 56665 88


Q ss_pred             hcccccceeecCCCcCCcccC
Q 038739          382 NFSDELLVLDLQGNNLPLSKG  402 (477)
Q Consensus       382 ~l~~~L~~L~Ls~N~l~~~~p  402 (477)
                      .++ +|++|++++|++.+.+|
T Consensus       495 ~l~-~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          495 RLT-SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCT-TCCCEECCSCCBCCCHH
T ss_pred             cCC-CCCEEEecCCCcCCCcc
Confidence            888 89999999999887655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.3e-40  Score=348.11  Aligned_cols=390  Identities=22%  Similarity=0.172  Sum_probs=255.1

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +||+.+.  +++++|||++|.|++..+.+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..+..|.+
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            3566554  47999999999999888889999999999999999999888889999999999999999999777788999


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC---
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL---  156 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L---  156 (477)
                      +++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.++   
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence            9999999999999988777789999999999999999975 467888899999999999999877666554432221   


Q ss_pred             -cEEECCCCcCCCcCC----------------------------------------------------------------
Q 038739          157 -QYLHLGSNNFSGDLL----------------------------------------------------------------  171 (477)
Q Consensus       157 -~~L~l~~n~l~~~~~----------------------------------------------------------------  171 (477)
                       ..++++.|.++...+                                                                
T Consensus       203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence             233333332221000                                                                


Q ss_pred             ---------------------------------------cCCCCCCCCCEEEccCCccccccc-----------------
Q 038739          172 ---------------------------------------GPIGNLRSLEAINVAKCNFSGQIT-----------------  195 (477)
Q Consensus       172 ---------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~-----------------  195 (477)
                                                             ..+.....++.|++.+|.+....+                 
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred             hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence                                                   001122345556665555432211                 


Q ss_pred             --hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc--chh
Q 038739          196 --SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF--PNF  271 (477)
Q Consensus       196 --~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~--p~~  271 (477)
                        .....+++|+.+++++|.+..............+|+.+++..+.+....  .....+++|+.+++..+.....  +..
T Consensus       363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc--ccccccccccchhhhhccccccccccc
Confidence              1123567888999998887654333333556667777777766433222  2222455666666665554222  133


Q ss_pred             hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccc-cCCCCcccCCCCCCCCCCCCccceeecCCCcCcc
Q 038739          272 LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG-FDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG  350 (477)
Q Consensus       272 l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~  350 (477)
                      +..+++++.++++.|.+.+..+..+.  .++.|+.|++++|++.. ..+..          ...+++|+.|++++|++++
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~----------~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDI----------FTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSC----------CTTCTTCCEEECTTSCCCE
T ss_pred             cccccccccccccccccccccccccc--cchhhhhhhhhhcccccccCchh----------hhhccccCEEECCCCccCC
Confidence            45556666666666666655555544  55666666666665332 21111          1234455566666666665


Q ss_pred             CCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCCC
Q 038739          351 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGE  407 (477)
Q Consensus       351 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~  407 (477)
                      ..|..|.++++|++|+|++|+|++..|..|..++ +|++|+|++|+|++..|.....
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT-TCCEEECTTSCCCBCCSSCTTC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC-CCCEEECCCCcCCCCCHHHHHh
Confidence            5555566666666666666666555555555555 5666666666665555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.1e-41  Score=344.90  Aligned_cols=361  Identities=21%  Similarity=0.226  Sum_probs=265.6

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      ++||+++|.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            68999999999 5776665  89999999999999888889999999999999999999888999999999999999999


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC--cEEECCCCcC--C
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--QYLHLGSNNF--S  167 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~  167 (477)
                      +++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            997 56665  89999999999999987 478899999999999999999976   456777788  9999999998  5


Q ss_pred             CcCCcCCCC--------------------------CCCCCEEEccCCc-------cccccchhhhc--------------
Q 038739          168 GDLLGPIGN--------------------------LRSLEAINVAKCN-------FSGQITSSLRN--------------  200 (477)
Q Consensus       168 ~~~~~~l~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~--------------  200 (477)
                      +..|..+..                          +++|+.+++++|.       +.+.++ .+..              
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            555555444                          3333344433332       111111 1111              


Q ss_pred             -------------CCCCCEEeCcCCcCccccchhhhh-----cCCCC--------------------------CCEEeCC
Q 038739          201 -------------LSQLTALDLAQNSYRGMIELDVLL-----TSWKN--------------------------LEFLGLS  236 (477)
Q Consensus       201 -------------l~~L~~L~L~~n~l~~~~~~~~~~-----~~~~~--------------------------L~~L~ls  236 (477)
                                   .++|++|++++|.+.+..+..  +     ..+++                          |+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR--DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC--CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccc--hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence                         235555555555555443332  2     33444                          5555555


Q ss_pred             CCCCccccccCCccCcCcccEEEccCCCCCC-cchhhhcCCCcCEEeccCCcccc--cCCccCCcccCCCCCeEEecCCc
Q 038739          237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQNQHHLRFMDLSDNRIQG--KVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       237 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~i~~--~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      +|.+....   ....+++|++|++++|.++. +|..+..+++|++|++++|++++  .+|..+.  .+++|++|++++|+
T Consensus       311 ~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          311 GTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNS  385 (520)
T ss_dssp             SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSC
T ss_pred             CCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCc
Confidence            55432221   11245677777887777754 56667777778888888877775  3445555  67778888888877


Q ss_pred             ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739          314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ  393 (477)
Q Consensus       314 l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls  393 (477)
                      +++..+..         ....+++|+.|++++|++++.+|..+.  ++|+.||+++|+++ .+|..+..++ +|++|+++
T Consensus       386 l~~~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~-~L~~L~L~  452 (520)
T 2z7x_B          386 VSYDEKKG---------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE-ALQELNVA  452 (520)
T ss_dssp             CBCCGGGC---------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECC
T ss_pred             CCcccccc---------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC-CCCEEECC
Confidence            77622211         123467899999999999888777654  78999999999998 7888888888 99999999


Q ss_pred             CCcCCcccCCC
Q 038739          394 GNNLPLSKGCE  404 (477)
Q Consensus       394 ~N~l~~~~p~~  404 (477)
                      +|+++ .+|..
T Consensus       453 ~N~l~-~l~~~  462 (520)
T 2z7x_B          453 SNQLK-SVPDG  462 (520)
T ss_dssp             SSCCC-CCCTT
T ss_pred             CCcCC-ccCHH
Confidence            99998 46654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.4e-41  Score=345.61  Aligned_cols=369  Identities=24%  Similarity=0.252  Sum_probs=265.9

Q ss_pred             CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcc-cCCcccCCC
Q 038739            3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNL   81 (477)
Q Consensus         3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l   81 (477)
                      |.+|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++++
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            5789999999999999999998888899999999999999999998888889999999999999999986 356789999


Q ss_pred             CCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccC------------------------CCCCCEEE
Q 038739           82 GSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGN------------------------FSSLKLLD  136 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~  136 (477)
                      ++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..                        +++|++|+
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE  202 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence            999999999998555555 67999999999999999998877776654                        56777777


Q ss_pred             ccCCCCcccC--C-ccccCCCCCcEEECCCC----------------------------cCCCcCC---------cC---
Q 038739          137 LRSCGFWGKV--P-HSIGNFTQLQYLHLGSN----------------------------NFSGDLL---------GP---  173 (477)
Q Consensus       137 L~~n~~~~~~--~-~~l~~l~~L~~L~l~~n----------------------------~l~~~~~---------~~---  173 (477)
                      +++|.+.+..  + .....+++|+.|++++|                            .+.+...         ..   
T Consensus       203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            7777776531  1 11122334444444433                            3322100         00   


Q ss_pred             -----------------------CCCCCCCCEEEccCCccccccchhh-hcCCCCCEEeCcCCcCccccchh-hhhcCCC
Q 038739          174 -----------------------IGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTALDLAQNSYRGMIELD-VLLTSWK  228 (477)
Q Consensus       174 -----------------------l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~  228 (477)
                                             +...++|+.|++++|.++ .+|..+ ..+++|++|++++|.+.+..+.. ..+..++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~  361 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP  361 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence                                   011245666777777665 344444 56788888888888877654321 1256677


Q ss_pred             CCCEEeCCCCCCcccccc-CCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739          229 NLEFLGLSLNRLSVLTKA-TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF  307 (477)
Q Consensus       229 ~L~~L~ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L  307 (477)
                      +|++|++++|+++.++.. .....+++|++|++++|+++.+|..+..+++|++|++++|+++ .+|..+    .++|+.|
T Consensus       362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~----~~~L~~L  436 (549)
T 2z81_A          362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----PQTLEVL  436 (549)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS----CTTCSEE
T ss_pred             cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh----cCCceEE
Confidence            788888888876654321 1122466788888888888777777777777888888887776 333322    2466677


Q ss_pred             EecCCcccccCCC-----CcccCCC-CCCCCC--CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739          308 NFSHNLLTGFDQH-----PVVLPGN-KGPLPV--PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP  377 (477)
Q Consensus       308 ~Ls~N~l~~~~~~-----~~~l~~n-~~~~~~--~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  377 (477)
                      ++++|++++....     .+++++| ...+|.  .+++|+.|++++|++++.+|..+..+++|+.|++++|++++..|
T Consensus       437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          437 DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            7777766655321     1245555 334443  36799999999999999999999999999999999999998776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.5e-39  Score=324.46  Aligned_cols=345  Identities=25%  Similarity=0.336  Sum_probs=298.2

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      ++++++|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            6789999999999984 55 48899999999999999997655  9999999999999999985544  99999999999


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|++++ .+.+.  ..+..+++|++|++++|.+++
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC
Confidence            99999976533  8999999999999999984 44 588999999999974 44333  238899999999999999986


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                      .  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+...    +..+++|+.|++++|.+.....   
T Consensus       192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---  260 (466)
T 1o6v_A          192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP---  260 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---
T ss_pred             C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCCCccccchh---
Confidence            4  358889999999999999987655  7889999999999999987532    7789999999999998776554   


Q ss_pred             ccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                      ...+++|++|++++|.++.++. +..+++|+.|++++|++.+..+  +.  .+++|+.|++++|++++..+         
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~---------  326 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--IS--NLKNLTYLTLYFNNISDISP---------  326 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GG--GCTTCSEEECCSSCCSCCGG---------
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hc--CCCCCCEEECcCCcCCCchh---------
Confidence            3467899999999999988876 8899999999999999997554  44  79999999999999987643         


Q ss_pred             CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL  399 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  399 (477)
                         ...+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..++ +|++|++++|++++
T Consensus       327 ---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTN  389 (466)
T ss_dssp             ---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred             ---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccC
Confidence               12467999999999999975  578999999999999999998877  88898 99999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-39  Score=327.57  Aligned_cols=349  Identities=24%  Similarity=0.217  Sum_probs=159.9

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCC-------------CEEecccCcCcccCC
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL-------------KELDLSQNRFFGELP   75 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~   75 (477)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.+++ +|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            46666666666666 4666666666666666666666666666666655543             666666666553 33


Q ss_pred             cccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCC
Q 038739           76 ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ  155 (477)
Q Consensus        76 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  155 (477)
                      ..   .++|++|++++|.+++ +|..   .++|++|++++|++++ ++..   .++|++|++++|.+++ +| .++++++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence            21   2456666666666544 3332   2455555555555552 2211   1455555555555543 34 3555555


Q ss_pred             CcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739          156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL  235 (477)
Q Consensus       156 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l  235 (477)
                      |++|++++|.+++ +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+.+...      ..++|++|++
T Consensus       155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l  222 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVA  222 (454)
T ss_dssp             CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEEC
T ss_pred             CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC------CcCcccEEEC
Confidence            5555555555553 22221   355555555555553 23 35555555555555555544221      1134555555


Q ss_pred             CCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccc
Q 038739          236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT  315 (477)
Q Consensus       236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~  315 (477)
                      ++|.+..++.   ...+++|++|++++|+++.+|..   +++|++|++++|++++ +|.     ..++|+.|++++|+++
T Consensus       223 ~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          223 GNNILEELPE---LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPE-----LPQSLTFLDVSENIFS  290 (454)
T ss_dssp             CSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCS
T ss_pred             cCCcCCcccc---cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCc-----ccCcCCEEECcCCccC
Confidence            5554443321   22344555555555555444432   2445555555555543 222     1234445555555444


Q ss_pred             ccC--CC---CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccce
Q 038739          316 GFD--QH---PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLV  389 (477)
Q Consensus       316 ~~~--~~---~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~  389 (477)
                      +..  +.   .+++++| ...++..+++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .++ +|++
T Consensus       291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-~L~~  361 (454)
T 1jl5_A          291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-NLKQ  361 (454)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-TCCE
T ss_pred             cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-hccE
Confidence            421  11   1133333 11223333456666666666664 4432   355666666666665 3444   233 5666


Q ss_pred             eecCCCcCCc--ccCCCC
Q 038739          390 LDLQGNNLPL--SKGCES  405 (477)
Q Consensus       390 L~Ls~N~l~~--~~p~~~  405 (477)
                      |++++|++++  .+|.+.
T Consensus       362 L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          362 LHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             EECCSSCCSSCCCCCTTC
T ss_pred             EECCCCCCCcCCCChHHH
Confidence            6666666666  555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-39  Score=325.12  Aligned_cols=352  Identities=20%  Similarity=0.157  Sum_probs=293.8

Q ss_pred             CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcc-cccccCCCCccEEEcc
Q 038739           36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL-PTSIRNLFSLEKLDLS  114 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls  114 (477)
                      -+.++.+++.++. +|. +  .++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus        12 ~~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            3567888888874 454 2  378999999999999888999999999999999999987555 5679999999999999


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCcc--ccCCCCCcEEECCCCcCCCcCCcC-CCCCCCCCEEEccCCccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS--IGNFTQLQYLHLGSNNFSGDLLGP-IGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~  191 (477)
                      +|++++..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..+.. +..+++|++|++++|.++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99999888999999999999999999998755544  899999999999999999877765 889999999999999999


Q ss_pred             cccchhhhcC--CCCCEEeCcCCcCccccchhh------hhcCCCCCCEEeCCCCCCccccccCCcc--CcCcccEEEcc
Q 038739          192 GQITSSLRNL--SQLTALDLAQNSYRGMIELDV------LLTSWKNLEFLGLSLNRLSVLTKATSDT--TSQKLKYIGLR  261 (477)
Q Consensus       192 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~------~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~L~  261 (477)
                      +..+..+..+  .+|+.|++++|.+.+..+...      .+..+++|++|++++|.+..........  ...+|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            8888888766  789999999999987654321      1235688999999999765433222111  34689999999


Q ss_pred             CCCCCCc-----------chhhh--cCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          262 SCNLTKF-----------PNFLQ--NQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       262 ~n~l~~~-----------p~~l~--~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                      +|.....           +..+.  ..++|++|++++|++.+..|..+.  .+++|+.|++++|++++..+..+      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~------  319 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAF------  319 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT------
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHh------
Confidence            8865211           11122  246899999999999999999888  89999999999999998755432      


Q ss_pred             CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE  404 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~  404 (477)
                          ..+++|+.|++++|.+++..|..++++++|++|||++|++++..|..|..++ +|++|++++|++++..+..
T Consensus       320 ----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~  390 (455)
T 3v47_A          320 ----WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGI  390 (455)
T ss_dssp             ----TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTT
T ss_pred             ----cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhH
Confidence                3467999999999999988899999999999999999999998899999998 9999999999998754433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-39  Score=332.71  Aligned_cols=367  Identities=20%  Similarity=0.191  Sum_probs=279.6

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +...+++++++|.+++ +|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            4556899999999994 666554  8999999999999988888999999999999999999988899999999999999


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC--cEEECCCCc
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--QYLHLGSNN  165 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~  165 (477)
                      +++|+++ .+|..  .+++|++|++++|++++ .+|..++++++|++|++++|.+.+.   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            9999996 56665  89999999999999986 3468999999999999999998763   34555555  999999999


Q ss_pred             C--CCcCCcCCCC--------------------------CCCCCEEEccCCc----------------------------
Q 038739          166 F--SGDLLGPIGN--------------------------LRSLEAINVAKCN----------------------------  189 (477)
Q Consensus       166 l--~~~~~~~l~~--------------------------l~~L~~L~l~~n~----------------------------  189 (477)
                      +  ++..+..+..                          +++|+.+++++|.                            
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence            8  6665555543                          3456666666653                            


Q ss_pred             cccc----cchhhhcCCCCCEEeCcCCcCccccchhhhh---cCC--------------------------CCCCEEeCC
Q 038739          190 FSGQ----ITSSLRNLSQLTALDLAQNSYRGMIELDVLL---TSW--------------------------KNLEFLGLS  236 (477)
Q Consensus       190 l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~--------------------------~~L~~L~ls  236 (477)
                      +.+.    .+.. ...++|++|++++|.+.+..+...+.   ..+                          .+|+.|+++
T Consensus       261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence            1110    0111 12347889999999887655433100   112                          346777777


Q ss_pred             CCCCccccccCCccCcCcccEEEccCCCCCC-cchhhhcCCCcCEEeccCCccccc--CCccCCcccCCCCCeEEecCCc
Q 038739          237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQNQHHLRFMDLSDNRIQGK--VPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       237 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~i~~~--~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      +|.+....   ....+++|++|++++|.++. +|..+..+++|++|++++|++++.  +|..+.  .+++|+.|++++|+
T Consensus       340 ~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~~L~~L~l~~N~  414 (562)
T 3a79_B          340 DTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSSLETLDVSLNS  414 (562)
T ss_dssp             SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCTTCCEEECTTSC
T ss_pred             CCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCCCCCEEECCCCc
Confidence            77543222   11356788999999998865 677788888999999999988863  234555  78889999999998


Q ss_pred             ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739          314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ  393 (477)
Q Consensus       314 l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls  393 (477)
                      +++..+..         ....+++|+.|++++|++++.+|..+.  ++|+.|||++|+++ .+|..+..++ +|++|+++
T Consensus       415 l~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~-~L~~L~L~  481 (562)
T 3a79_B          415 LNSHAYDR---------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ-ALQELNVA  481 (562)
T ss_dssp             CBSCCSSC---------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC-CCSEEECC
T ss_pred             CCCccChh---------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC-CCCEEECC
Confidence            88733221         123467899999999999987776554  78999999999998 7888777888 99999999


Q ss_pred             CCcCCcccCCC
Q 038739          394 GNNLPLSKGCE  404 (477)
Q Consensus       394 ~N~l~~~~p~~  404 (477)
                      +|+++ .+|..
T Consensus       482 ~N~l~-~l~~~  491 (562)
T 3a79_B          482 SNQLK-SVPDG  491 (562)
T ss_dssp             SSCCC-CCCTT
T ss_pred             CCCCC-CCCHH
Confidence            99998 56654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-37  Score=325.77  Aligned_cols=385  Identities=20%  Similarity=0.162  Sum_probs=258.6

Q ss_pred             CCccCCCCCC---CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCccc
Q 038739            2 IPSSLGNLSK---LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM   78 (477)
Q Consensus         2 lp~~l~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   78 (477)
                      +|.+...|..   -++.+-++-+++ .+|..+-  +++++|||++|+|+++.+.+|.++++|++|+|++|++++..+.+|
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCCCccccCCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence            4544444322   245677777787 5665543  489999999999998888899999999999999999998888899


Q ss_pred             CCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCc
Q 038739           79 GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQ  157 (477)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~  157 (477)
                      .++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|+
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            999999999999999987777889999999999999999997777789999999999999999965 4678889999999


Q ss_pred             EEECCCCcCCCcCCcCCCCCCCC----CEEEccCCccccccch------------------------h------------
Q 038739          158 YLHLGSNNFSGDLLGPIGNLRSL----EAINVAKCNFSGQITS------------------------S------------  197 (477)
Q Consensus       158 ~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~------------------------~------------  197 (477)
                      +|++++|.+++..+..+..+.++    ..++++.|.++...+.                        .            
T Consensus       177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l  256 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL  256 (635)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred             hhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence            99999999988766665433222    2344444433211110                        0            


Q ss_pred             -------------------------------------------------------------------hhcCCCCCEEeCc
Q 038739          198 -------------------------------------------------------------------LRNLSQLTALDLA  210 (477)
Q Consensus       198 -------------------------------------------------------------------l~~l~~L~~L~L~  210 (477)
                                                                                         +.....++.|++.
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  336 (635)
T 4g8a_A          257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV  336 (635)
T ss_dssp             EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc
Confidence                                                                               1112223333333


Q ss_pred             CCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCC---cchhhhcCCCcCEEeccCCc
Q 038739          211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK---FPNFLQNQHHLRFMDLSDNR  287 (477)
Q Consensus       211 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~---~p~~l~~~~~L~~L~Ls~n~  287 (477)
                      +|.+.....     ..++.|+.+++..|.+...   .....+++|+.+++++|.+..   .+.....+.+|+.++++.|.
T Consensus       337 ~~~~~~~~~-----~~l~~L~~l~l~~n~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~  408 (635)
T 4g8a_A          337 NCKFGQFPT-----LKLKSLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG  408 (635)
T ss_dssp             SCEESSCCC-----CBCTTCCEEEEESCCSCCB---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred             cccccCcCc-----ccchhhhhcccccccCCCC---cccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence            333322111     1122233333333321111   111134455555555555521   23333444445555544444


Q ss_pred             c-----------------------cccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecC
Q 038739          288 I-----------------------QGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLAS  344 (477)
Q Consensus       288 i-----------------------~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls  344 (477)
                      +                       ....+..... .+++++.+++++|.+.+..+          ......+.++.|+++
T Consensus       409 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-~l~~l~~l~ls~n~l~~~~~----------~~~~~~~~L~~L~Ls  477 (635)
T 4g8a_A          409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFN----------GIFNGLSSLEVLKMA  477 (635)
T ss_dssp             EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT-TCTTCCEEECTTSCCEECCT----------TTTTTCTTCCEEECT
T ss_pred             cccccccccccccccchhhhhccccccccccccc-cccccccccccccccccccc----------cccccchhhhhhhhh
Confidence            4                       4333222111 44555555555555544332          223456789999999


Q ss_pred             CCcCc-cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCCCCC
Q 038739          345 NNSLT-GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAP  409 (477)
Q Consensus       345 ~n~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~~~  409 (477)
                      +|.+. +.+|..|..+++|++|||++|++++..|..|..++ +|++|+|++|+|++..|..+...+
T Consensus       478 ~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~  542 (635)
T 4g8a_A          478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLN  542 (635)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCT
T ss_pred             hcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCC
Confidence            99854 45788899999999999999999999999999998 999999999999988776555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=315.62  Aligned_cols=320  Identities=21%  Similarity=0.191  Sum_probs=203.3

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      +.++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            46666666666 4444332  46677777777776666666667777777777777666666666666667777777666


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG  172 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  172 (477)
                      +++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            66554445566666666666666666655555566666666666666665555555555555555555555555544334


Q ss_pred             CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cC
Q 038739          173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TT  251 (477)
Q Consensus       173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~  251 (477)
                      .+..+++|+.|++++|.+.+..+..+.                          .+++|+.|++++|..  ....+.. ..
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~--------------------------~l~~L~~L~l~~~~~--~~~~~~~~~~  222 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFK--------------------------RLYRLKVLEISHWPY--LDTMTPNCLY  222 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSC--------------------------SCTTCCEEEEECCTT--CCEECTTTTT
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcc--------------------------cCcccceeeCCCCcc--ccccCccccc
Confidence            444455555555555554444444444                          445555555554421  1111111 12


Q ss_pred             cCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739          252 SQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP  330 (477)
Q Consensus       252 ~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~  330 (477)
                      ..+|++|++++|.++.+| ..+..+++|+.|++++|++++..+..+.  .+++|+.|++++|++++..+..+        
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~--------  292 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAF--------  292 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT--TCTTCCEEECCSSCCSEECTTTB--------
T ss_pred             CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc--ccccCCEEECCCCccceECHHHh--------
Confidence            337888888888888887 4678888999999999998877777776  78888888888888877654332        


Q ss_pred             CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCccc
Q 038739          331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL  375 (477)
Q Consensus       331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  375 (477)
                        ..+++|+.|++++|++++..+..|..+++|+.|+|++|.+...
T Consensus       293 --~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          293 --RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             --TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             --cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence              2356677777777777766666677777888888888877643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.5e-37  Score=312.86  Aligned_cols=330  Identities=23%  Similarity=0.320  Sum_probs=284.5

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|++|++++|.+++. +. +.++++|
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L  136 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL  136 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred             chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence            47789999999999999996654  9999999999999999997655  99999999999999999854 33 8999999


Q ss_pred             CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739           85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN  164 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  164 (477)
                      ++|++++|.+.+. + .+..+++|++|+++ |.+.+. + .+.++++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus       137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence            9999999998653 3 58999999999997 455533 3 388999999999999998654  45889999999999999


Q ss_pred             cCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739          165 NFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT  244 (477)
Q Consensus       165 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  244 (477)
                      .+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+    +..+++|+.|++++|.+...+
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~  281 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS  281 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG
T ss_pred             ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccc
Confidence            9987654  77899999999999999853  468899999999999999988765    778999999999999887665


Q ss_pred             ccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCccc
Q 038739          245 KATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL  324 (477)
Q Consensus       245 ~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l  324 (477)
                      .   ...+++|++|++++|.++.++. +..+++|+.|++++|++++..|  +.  .+++|+.|++++|++++...     
T Consensus       282 ~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~-----  348 (466)
T 1o6v_A          282 P---LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VS--SLTKLQRLFFYNNKVSDVSS-----  348 (466)
T ss_dssp             G---GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GG--GCTTCCEEECCSSCCCCCGG-----
T ss_pred             c---ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hc--cCccCCEeECCCCccCCchh-----
Confidence            4   3367899999999999988876 7899999999999999998766  44  79999999999999987521     


Q ss_pred             CCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739          325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       325 ~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  378 (477)
                             ...+++|+.|++++|++++..|  +..+++|+.|++++|++++ +|.
T Consensus       349 -------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~  392 (466)
T 1o6v_A          349 -------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV  392 (466)
T ss_dssp             -------GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred             -------hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence                   2346899999999999998877  8999999999999999996 443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.5e-38  Score=314.42  Aligned_cols=361  Identities=24%  Similarity=0.270  Sum_probs=271.1

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCC-------------CEEEcccccCCccccccCCCCCCCCEEeccc
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSL-------------EELDLSANFLSSEWPISIGNLSSLKELDLSQ   67 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   67 (477)
                      +||++|+++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++. |.   -.++|++|++++
T Consensus        25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~  100 (454)
T 1jl5_A           25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVASC  100 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEECCS
T ss_pred             hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEccC
Confidence            489999999999999999999999999999998864             9999999999863 43   247899999999


Q ss_pred             CcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCC
Q 038739           68 NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP  147 (477)
Q Consensus        68 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  147 (477)
                      |.+++ +|..   +++|++|++++|++++ ++..   .++|++|++++|++++ +| .++++++|++|++++|.+++ +|
T Consensus       101 n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp  169 (454)
T 1jl5_A          101 NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP  169 (454)
T ss_dssp             SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred             CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence            99986 6653   4899999999999865 3322   2699999999999995 77 69999999999999999975 55


Q ss_pred             ccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCC
Q 038739          148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW  227 (477)
Q Consensus       148 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  227 (477)
                      ..+   ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|++|++++|.+....  .  +..+
T Consensus       170 ~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp--~--~~~l  236 (454)
T 1jl5_A          170 DLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP--E--LQNL  236 (454)
T ss_dssp             CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC--C--CTTC
T ss_pred             CCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc--c--cCCC
Confidence            543   589999999999997 45 68999999999999999985 3432   358999999999998544  2  7789


Q ss_pred             CCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739          228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF  307 (477)
Q Consensus       228 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L  307 (477)
                      ++|++|++++|++..++..     +++|++|++++|.++.+|..   +++|++|++++|++++. |.     ..++|+.|
T Consensus       237 ~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-~~-----~~~~L~~L  302 (454)
T 1jl5_A          237 PFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-SE-----LPPNLYYL  302 (454)
T ss_dssp             TTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-SC-----CCTTCCEE
T ss_pred             CCCCEEECCCCcCCccccc-----ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-cC-----cCCcCCEE
Confidence            9999999999988765442     36899999999999888864   48899999999999863 22     22678888


Q ss_pred             EecCCcccccCCC-----CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcc--cCCch
Q 038739          308 NFSHNLLTGFDQH-----PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG--LLPQC  379 (477)
Q Consensus       308 ~Ls~N~l~~~~~~-----~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~  379 (477)
                      ++++|++++....     .+++++| ...+|..+++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|..
T Consensus       303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             ECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             ECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence            8888888874321     2366666 4457778899999999999999 5676   57899999999999998  78888


Q ss_pred             hhhc-------------ccccceeecCCCcCCc--ccCCCCCCC
Q 038739          380 LGNF-------------SDELLVLDLQGNNLPL--SKGCESGEA  408 (477)
Q Consensus       380 l~~l-------------~~~L~~L~Ls~N~l~~--~~p~~~~~~  408 (477)
                      +..+             + +|++|++++|++++  .+|.+....
T Consensus       379 l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          379 VEDLRMNSHLAEVPELPQ-NLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             CCEEECCC------------------------------------
T ss_pred             HHhhhhcccccccccccC-cCCEEECCCCcCCccccchhhHhhe
Confidence            8877             6 89999999999998  677655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.9e-38  Score=313.82  Aligned_cols=346  Identities=19%  Similarity=0.169  Sum_probs=248.1

Q ss_pred             ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739            4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS   83 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   83 (477)
                      .+++++++|++|++++|.+++. | .+..+++|++|++++|++++. |  ++.+++|++|++++|++++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            4567789999999999999964 5 689999999999999999875 3  88999999999999999864 3  889999


Q ss_pred             CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCC
Q 038739           84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGS  163 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  163 (477)
                      |++|++++|++++. +  ++.+++|++|++++|++++. +  ++.+++|++|++++|...+.+  .+..+++|++|++++
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            99999999999763 3  88999999999999999863 3  788999999999999665655  478889999999999


Q ss_pred             CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739          164 NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL  243 (477)
Q Consensus       164 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  243 (477)
                      |.+++. +  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++.+. +    +..+++|+.|++++|+++..
T Consensus       180 n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          180 NKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             SCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCC
T ss_pred             Ccccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCCc
Confidence            999874 3  78889999999999999865   378899999999999999884 3    67789999999999987765


Q ss_pred             cccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcc
Q 038739          244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVV  323 (477)
Q Consensus       244 ~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  323 (477)
                      +    ...+++|+.|++++|.+             +.|++++|++.+.+|.  .  .+++|+.|++++|...+..+... 
T Consensus       249 ~----~~~l~~L~~L~l~~n~L-------------~~L~l~~n~~~~~~~~--~--~l~~L~~L~Ls~n~~l~~l~~~~-  306 (457)
T 3bz5_A          249 D----VSTLSKLTTLHCIQTDL-------------LEIDLTHNTQLIYFQA--E--GCRKIKELDVTHNTQLYLLDCQA-  306 (457)
T ss_dssp             C----CTTCTTCCEEECTTCCC-------------SCCCCTTCTTCCEEEC--T--TCTTCCCCCCTTCTTCCEEECTT-
T ss_pred             C----HHHCCCCCEEeccCCCC-------------CEEECCCCccCCcccc--c--ccccCCEEECCCCcccceeccCC-
Confidence            4    12455677776666543             3333333333333331  1  33444444444443332221100 


Q ss_pred             cCCCCCCC-CCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchh-------------hhcccccce
Q 038739          324 LPGNKGPL-PVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL-------------GNFSDELLV  389 (477)
Q Consensus       324 l~~n~~~~-~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l-------------~~l~~~L~~  389 (477)
                        .....+ ....++|+.|++++|++++. +  ++++++|+.||+++|++++. |. +             ..+. .|..
T Consensus       307 --~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~~-L~~L~l~~n~l~g~~~~~-~l~~  378 (457)
T 3bz5_A          307 --AGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-SS-VGKIPALNNNFEAEGQTI-TMPK  378 (457)
T ss_dssp             --CCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-TT-GGGSSGGGTSEEEEEEEE-ECCC
T ss_pred             --CcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-cc-cccccccCCcEEecceee-ecCc
Confidence              000000 01124555666666666652 2  55566666666666666542 11 1             2334 6888


Q ss_pred             eecCCCcCCcccCCCCC
Q 038739          390 LDLQGNNLPLSKGCESG  406 (477)
Q Consensus       390 L~Ls~N~l~~~~p~~~~  406 (477)
                      +++++|+++|.+|....
T Consensus       379 l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          379 ETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             BCCBTTBEEEECCTTCB
T ss_pred             cccccCcEEEEcChhHh
Confidence            99999999999997653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=313.14  Aligned_cols=309  Identities=22%  Similarity=0.249  Sum_probs=273.0

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ||..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|+++...+..|.++
T Consensus        26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  103 (477)
T 2id5_A           26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL  103 (477)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred             CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence            566664  589999999999998888899999999999999999999889999999999999999999997666778999


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL  161 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  161 (477)
                      ++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            99999999999998888889999999999999999999888889999999999999999998877778999999999999


Q ss_pred             CCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739          162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS  241 (477)
Q Consensus       162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~  241 (477)
                      ++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+.+.....  +..+++|+.|++++|.+.
T Consensus       184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSSCCC
T ss_pred             CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCCcCC
Confidence            999999888888999999999999999888777777777779999999999998766544  788999999999999877


Q ss_pred             cccccCCccCcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccccc
Q 038739          242 VLTKATSDTTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGF  317 (477)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~  317 (477)
                      .++...+ ..+++|++|++++|.++.+ |..+..+++|++|++++|++++..+..+.  .+++|+.|++++|.++..
T Consensus       262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          262 TIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH--SVGNLETLILDSNPLACD  335 (477)
T ss_dssp             EECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS--CGGGCCEEECCSSCEECS
T ss_pred             ccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC--CCcccCEEEccCCCccCc
Confidence            6554332 2567899999999999766 57788889999999999999876666666  788899999999888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.8e-36  Score=295.01  Aligned_cols=312  Identities=21%  Similarity=0.172  Sum_probs=199.4

Q ss_pred             CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739           33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD  112 (477)
Q Consensus        33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  112 (477)
                      ++++++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            35566666666666544444455566666666666666555555566666666666666666555555556666666666


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .                   
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-------------------  181 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D-------------------  181 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C-------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c-------------------
Confidence            666665533333345555555555555555544444455555555555555555432   1                   


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL  272 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l  272 (477)
                           +..+++|+.|++++|.+.+.       ...++|+.|++++|.+...+..    ..++|++|++++|.++.. .++
T Consensus       182 -----~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~-~~l  244 (390)
T 3o6n_A          182 -----LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT-AWL  244 (390)
T ss_dssp             -----GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCC-GGG
T ss_pred             -----cccccccceeeccccccccc-------CCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCccc-HHH
Confidence                 33344555555555554432       1224566666666655444321    235677777777777665 357


Q ss_pred             hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCC
Q 038739          273 QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEI  352 (477)
Q Consensus       273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~  352 (477)
                      ..+++|++|++++|++++..|..+.  .+++|+.|++++|++++....           ...+++|+.|++++|+++ .+
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~-----------~~~l~~L~~L~L~~n~l~-~~  310 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLL-HV  310 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEECS-----------SSCCTTCCEEECCSSCCC-CC
T ss_pred             cCCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCcc-----------cCCCCCCCEEECCCCcce-ec
Confidence            7788888888888888877777776  788888888888888765321           134567888888888888 57


Q ss_pred             ChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739          353 PSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       353 p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                      |..+..+++|+.|++++|++++. |  +..++ +|++|++++|++.+..
T Consensus       311 ~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~-~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNSIVTL-K--LSTHH-TLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCC-C--CCTTC-CCSEEECCSSCEEHHH
T ss_pred             CccccccCcCCEEECCCCcccee-C--chhhc-cCCEEEcCCCCccchh
Confidence            77889999999999999999854 4  56777 9999999999997653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-35  Score=296.98  Aligned_cols=321  Identities=17%  Similarity=0.162  Sum_probs=265.9

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      .++++++|++|++++|.+++. |  ++.+++|++|++++|++++. +  ++++++|++|++++|++++ ++  ++.+++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            688999999999999999964 4  89999999999999999975 3  8999999999999999986 44  8999999


Q ss_pred             CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739           85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN  164 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  164 (477)
                      ++|++++|++++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|
T Consensus       130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence            9999999999774   3889999999999999766555  47889999999999999977 44  889999999999999


Q ss_pred             cCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc-
Q 038739          165 NFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL-  243 (477)
Q Consensus       165 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-  243 (477)
                      .+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|.+.+..     ...+++|+.|++++|.+..+ 
T Consensus       202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTCCCSCCC
T ss_pred             cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCCCCCEEE
Confidence            99875   48889999999999999997 45  889999999999999999865     34566666666665544432 


Q ss_pred             -------cccCCccCcCcccEEEccCCCC-CCcch--------hhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739          244 -------TKATSDTTSQKLKYIGLRSCNL-TKFPN--------FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF  307 (477)
Q Consensus       244 -------~~~~~~~~~~~L~~L~L~~n~l-~~~p~--------~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L  307 (477)
                             +..+ ...+++|+.|++++|.. +.+|.        .+..+++|++|++++|++++. +  +.  .+++|+.|
T Consensus       271 l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~--~l~~L~~L  344 (457)
T 3bz5_A          271 LTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VS--HNTKLKSL  344 (457)
T ss_dssp             CTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CT--TCTTCSEE
T ss_pred             CCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cc--cCCcCcEE
Confidence                   2222 22567899999999864 33331        256678999999999999974 3  55  78999999


Q ss_pred             EecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhh
Q 038739          308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN  382 (477)
Q Consensus       308 ~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~  382 (477)
                      ++++|+++++                  +.+..+++++|.++|.     +.+..|+.+++++|+++|.+|..+..
T Consensus       345 ~l~~N~l~~l------------------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          345 SCVNAHIQDF------------------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             ECCSSCCCBC------------------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ECCCCCCCCc------------------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            9999998863                  4577888999999876     46778999999999999999976543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2e-35  Score=287.31  Aligned_cols=307  Identities=21%  Similarity=0.291  Sum_probs=207.8

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.++..  +.+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            44556666666666666533 2 356666666666666666532 22 66666677777766666442  3466666777


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      +|++++|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            77777776663 332 6666677777777665444333 36667777777777777664332  5667777777777777


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP  269 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p  269 (477)
                      +.+..+  +..+++|+.+++++|.+.+..+    +..+++|++|++++|.+...+.   ...+++|++|++++|.++.++
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~  259 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN  259 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh
Confidence            764332  6677777777777777766544    5567777777777776665544   335667888888888887774


Q ss_pred             hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc
Q 038739          270 NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT  349 (477)
Q Consensus       270 ~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~  349 (477)
                       .+..+++|++|++++|++++. + .+.  .+++|+.|++++|++++                                 
T Consensus       260 -~~~~l~~L~~L~l~~n~l~~~-~-~~~--~l~~L~~L~L~~n~l~~---------------------------------  301 (347)
T 4fmz_A          260 -AVKDLTKLKMLNVGSNQISDI-S-VLN--NLSQLNSLFLNNNQLGN---------------------------------  301 (347)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEECCSSCCCG---------------------------------
T ss_pred             -hHhcCCCcCEEEccCCccCCC-h-hhc--CCCCCCEEECcCCcCCC---------------------------------
Confidence             577888999999999988854 3 344  67888888887766553                                 


Q ss_pred             cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCC
Q 038739          350 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLP  398 (477)
Q Consensus       350 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~  398 (477)
                       ..|..++.+++|++|++++|++++..|  +..++ +|++|++++|+++
T Consensus       302 -~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 -EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS-KMDSADFANQVIK  346 (347)
T ss_dssp             -GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT-TCSEESSSCC---
T ss_pred             -cChhHhhccccCCEEEccCCccccccC--hhhhh-ccceeehhhhccc
Confidence             456778888999999999999987666  77787 8999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4e-35  Score=285.28  Aligned_cols=307  Identities=21%  Similarity=0.316  Sum_probs=259.8

Q ss_pred             CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739            6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK   85 (477)
Q Consensus         6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   85 (477)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.++. + ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            3468899999999999984 44 48899999999999999986544  8999999999999999974 3 3689999999


Q ss_pred             EEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739           86 VLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN  165 (477)
Q Consensus        86 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  165 (477)
                      +|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            999999999754 33 8899999999999997664444 58899999999999999865543  8899999999999999


Q ss_pred             CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                      +.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+.+..+    +..+++|++|++++|.+...+ 
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-  259 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDIN-  259 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCCh-
Confidence            986433  7889999999999999986544  8899999999999999987665    778999999999999877653 


Q ss_pred             cCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccC
Q 038739          246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLP  325 (477)
Q Consensus       246 ~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  325 (477)
                        ....+++|++|++++|.++.++ .+..+++|++|++++|++++..|..+.  .+++|+.|++++|++++.        
T Consensus       260 --~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~--------  326 (347)
T 4fmz_A          260 --AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDI--------  326 (347)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH--TCTTCSEEECCSSSCCCC--------
T ss_pred             --hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh--ccccCCEEEccCCccccc--------
Confidence              2336789999999999998885 588999999999999999988888777  788999999988877642        


Q ss_pred             CCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc
Q 038739          326 GNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS  373 (477)
Q Consensus       326 ~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~  373 (477)
                                                .|  +..+++|++||+++|.++
T Consensus       327 --------------------------~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          327 --------------------------RP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --------------------------GG--GGGCTTCSEESSSCC---
T ss_pred             --------------------------cC--hhhhhccceeehhhhccc
Confidence                                      23  788999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-36  Score=295.22  Aligned_cols=312  Identities=19%  Similarity=0.169  Sum_probs=246.5

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      .++++++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46899999999999986666668999999999999999998888899999999999999999998888889999999999


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      ++++|+++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999999765555679999999999999999988888899999999999999999764   3567789999999999887


Q ss_pred             CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739          168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT  247 (477)
Q Consensus       168 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  247 (477)
                      +     +...++|++|++++|.++.. +.  ...++|+.|++++|.+.+..    .+..+++|+.|++++|.+.......
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhH
Confidence            4     23346899999999988754 32  23468888888888887652    2667788888888888665442221


Q ss_pred             CccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCC
Q 038739          248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN  327 (477)
Q Consensus       248 ~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n  327 (477)
                      . ..+++|++|++++|.++.+|..+..+++|++|++++|+++ .+|..+.  .+++|+.|++++|+++..          
T Consensus       268 ~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~l~~L~~L~L~~N~i~~~----------  333 (390)
T 3o6n_A          268 F-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTL----------  333 (390)
T ss_dssp             G-TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCC----------
T ss_pred             c-cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc--ccCcCCEEECCCCcccee----------
Confidence            1 2456677777777777766665666677777777777776 3444444  566677777766665532          


Q ss_pred             CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCccc
Q 038739          328 KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL  375 (477)
Q Consensus       328 ~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  375 (477)
                                               +  +..+++|+.|++++|++++.
T Consensus       334 -------------------------~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          334 -------------------------K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -------------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -------------------------C--chhhccCCEEEcCCCCccch
Confidence                                     2  55678899999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-35  Score=306.27  Aligned_cols=311  Identities=20%  Similarity=0.179  Sum_probs=190.2

Q ss_pred             CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEc
Q 038739           58 SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDL  137 (477)
Q Consensus        58 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  137 (477)
                      .+++.+++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            34444444444444333333344444444444444444433344444444444444444444444444444444444444


Q ss_pred             cCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739          138 RSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       138 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..   +..+++|+.|++++|.+.+.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence            444444333333444445555555555554444444455555555555555554321   33455566666666655432


Q ss_pred             cchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCC
Q 038739          218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLL  297 (477)
Q Consensus       218 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~  297 (477)
                             ...++|+.|++++|.+..++...    .++|+.|++++|.++.. .++..+++|+.|++++|.+++..|..+.
T Consensus       208 -------~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          208 -------AIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             -------ECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -------cCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                   22345666666666555443322    24688888888887664 4677888889999998888888888777


Q ss_pred             cccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739          298 DPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP  377 (477)
Q Consensus       298 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  377 (477)
                        .+++|+.|++++|++++....           ...+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++. |
T Consensus       276 --~l~~L~~L~Ls~N~l~~l~~~-----------~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~  340 (597)
T 3oja_B          276 --KMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K  340 (597)
T ss_dssp             --TCSSCCEEECTTSCCCEEECS-----------SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred             --CccCCCEEECCCCCCCCCCcc-----------cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C
Confidence              788889999998888875321           133678889999999988 6788899999999999999999855 3


Q ss_pred             chhhhcccccceeecCCCcCCccc
Q 038739          378 QCLGNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       378 ~~l~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                        +..++ +|++|++++|++.+..
T Consensus       341 --~~~~~-~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          341 --LSTHH-TLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             --CCTTC-CCSEEECCSSCEEHHH
T ss_pred             --hhhcC-CCCEEEeeCCCCCChh
Confidence              55677 8999999999997654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-35  Score=305.00  Aligned_cols=310  Identities=19%  Similarity=0.120  Sum_probs=187.4

Q ss_pred             CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739           33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD  112 (477)
Q Consensus        33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  112 (477)
                      +.+++.|++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            35566666666666554444455666666666666666655555666666666666666666655555566666666666


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            6666666444444566666666666666666655556666666666666666665432   3445566666666666553


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc-chh
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF-PNF  271 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~  271 (477)
                           +...++|+.|++++|.+......     ..++|+.|++++|.+...   .....+++|+.|++++|.++.+ |..
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             -----ccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHH
Confidence                 22344566666666666544321     235666666666655432   1222455667777777766544 556


Q ss_pred             hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccC
Q 038739          272 LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE  351 (477)
Q Consensus       272 l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~  351 (477)
                      +..+++|+.|+|++|++++ +|..+.  .+++|+.|++++|.+++.+..           ...+++|+.|++++|.+++.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~--~l~~L~~L~Ls~N~l~~i~~~-----------~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQ--PIPTLKVLDLSHNHLLHVERN-----------QPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSS--CCTTCCEEECCSSCCCCCGGG-----------HHHHTTCSEEECCSSCCCCC
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccc--cCCCCcEEECCCCCCCccCcc-----------cccCCCCCEEECCCCCCCCc
Confidence            6667777777777777764 343333  566777777777766643210           01245677777777777643


Q ss_pred             CChhhhccCCCCeEeCCCCcCccc
Q 038739          352 IPSWICNLNILESLVLSHNNLSGL  375 (477)
Q Consensus       352 ~p~~~~~l~~L~~LdLs~N~l~~~  375 (477)
                       |  +..+++|+.|+|++|.+++.
T Consensus       340 -~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          340 -K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             -C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -C--hhhcCCCCEEEeeCCCCCCh
Confidence             2  56678899999999998865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.4e-32  Score=265.30  Aligned_cols=293  Identities=23%  Similarity=0.256  Sum_probs=153.1

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      ++++++++++.++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            34455555544442 232221  345555555555544444445555555555555555544444455555555555555


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC--cCCcCCCCCCCCCEEEccCCcccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+++|++|++++|.++.
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            55554 3333332  455555555555544444445555555555555555432  334444555555555555555542


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL  272 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l  272 (477)
                       +|..+.  ++|++|++++|.+.+..+..  +..+++|+.|++++|.+....... ...+++|++|++++|.++.+|..+
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l  259 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGL  259 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCSSCCTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCccCChhh
Confidence             222221  45666666666655544333  555556666666665444332211 113456777777777777777777


Q ss_pred             hcCCCcCEEeccCCcccccCCccCCcc----cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739          273 QNQHHLRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL  348 (477)
Q Consensus       273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l  348 (477)
                      ..+++|++|++++|++++..+..+...    ..+.++.+++++|.+...                               
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~-------------------------------  308 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW-------------------------------  308 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG-------------------------------
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc-------------------------------
Confidence            777888888888888876555544310    124555555555554321                               


Q ss_pred             ccCCChhhhccCCCCeEeCCCCc
Q 038739          349 TGEIPSWICNLNILESLVLSHNN  371 (477)
Q Consensus       349 ~~~~p~~~~~l~~L~~LdLs~N~  371 (477)
                       +..|..|..+++++.++|++|+
T Consensus       309 -~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          309 -EIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -GSCGGGGTTCCCGGGEEC----
T ss_pred             -ccCccccccccceeEEEecccC
Confidence             1446778888899999998885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1e-32  Score=266.50  Aligned_cols=292  Identities=20%  Similarity=0.205  Sum_probs=162.8

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      ++++++++++.++ .+|..+  .++|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555555555554 233333  2455555555555554445555555555666665555555445555555556666665


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC--cCCcCCCCCCCCCEEEccCCcccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            55555 3443333  556666666665554444455556666666666665542  344445444 56666666666653


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL  272 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l  272 (477)
                       +|..+.  ++|++|++++|.+.+..+..  +..+++|+.|++++|.+........ ..+++|++|++++|.++.+|..+
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp~~l  260 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVPAGL  260 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTS--STTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCBCCTTG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCeecChhh
Confidence             332222  46666666666666554433  5556666666666665544332111 13456677777777777777777


Q ss_pred             hcCCCcCEEeccCCcccccCCccCCcc----cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739          273 QNQHHLRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL  348 (477)
Q Consensus       273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l  348 (477)
                      ..+++|++|++++|++++..+..+...    ..+.|+.|++++|.+...                               
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~-------------------------------  309 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW-------------------------------  309 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-------------------------------
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc-------------------------------
Confidence            777778888888777776555544310    123444555554443311                               


Q ss_pred             ccCCChhhhccCCCCeEeCCCCc
Q 038739          349 TGEIPSWICNLNILESLVLSHNN  371 (477)
Q Consensus       349 ~~~~p~~~~~l~~L~~LdLs~N~  371 (477)
                       +..|..|..+++|+.+++++|+
T Consensus       310 -~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          310 -EVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -GSCGGGGTTBCCSTTEEC----
T ss_pred             -ccCcccccccchhhhhhccccc
Confidence             3557778889999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.3e-36  Score=307.26  Aligned_cols=381  Identities=17%  Similarity=0.118  Sum_probs=256.9

Q ss_pred             CCCCEEEccCCCCCCCcccc-ccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcccCCccc-CCCC-
Q 038739           10 SKLLHLDLSLNELQGELPVS-VGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFGELPISM-GNLG-   82 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~-   82 (477)
                      ++|++|++++|.++...... +..+++|++|++++|++++.    ++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            57899999999988554433 78889999999999998853    45677888999999999999875433332 2344 


Q ss_pred             ---CCCEEeCcCCCCCC----cccccccCCCCccEEEccCCcCcCCCCccc-----cCCCCCCEEEccCCCCcccC----
Q 038739           83 ---SLKVLDLSQNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWST-----GNFSSLKLLDLRSCGFWGKV----  146 (477)
Q Consensus        83 ---~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~----  146 (477)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999874    457888999999999999999875433322     23567999999999887643    


Q ss_pred             CccccCCCCCcEEECCCCcCCCcCCcCCC-----CCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCccc
Q 038739          147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIG-----NLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       147 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45566788999999999988754333332     256899999999988763    466777888999999999987653


Q ss_pred             cchh---hhhcCCCCCCEEeCCCCCCccccccCC---ccCcCcccEEEccCCCCCCc-chhhh-----cCCCcCEEeccC
Q 038739          218 IELD---VLLTSWKNLEFLGLSLNRLSVLTKATS---DTTSQKLKYIGLRSCNLTKF-PNFLQ-----NQHHLRFMDLSD  285 (477)
Q Consensus       218 ~~~~---~~~~~~~~L~~L~ls~n~i~~~~~~~~---~~~~~~L~~L~L~~n~l~~~-p~~l~-----~~~~L~~L~Ls~  285 (477)
                      ....   ..+..+++|++|++++|.++..+....   ...+++|++|++++|.++.. +..+.     ..++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2111   123357888888888887665321111   11356788888888877432 12222     225788888888


Q ss_pred             Cccccc----CCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCcc----CCChhhh
Q 038739          286 NRIQGK----VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG----EIPSWIC  357 (477)
Q Consensus       286 n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~----~~p~~~~  357 (477)
                      |.+++.    ++..+.  .+++|+.|++++|++++.....+     ...+....+.|+.|++++|.+++    .+|..+.
T Consensus       323 n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l-----~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  395 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVREL-----CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  395 (461)
T ss_dssp             SCCBGGGHHHHHHHHH--HCSSCCEEECCSSBCHHHHHHHH-----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHh--hCCCccEEEccCCccccccHHHH-----HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence            887755    233333  56788888888887765321110     00001113467777777777775    5666677


Q ss_pred             ccCCCCeEeCCCCcCcccCCchhh----h-cccccceeecCCCcCC
Q 038739          358 NLNILESLVLSHNNLSGLLPQCLG----N-FSDELLVLDLQGNNLP  398 (477)
Q Consensus       358 ~l~~L~~LdLs~N~l~~~~p~~l~----~-l~~~L~~L~Ls~N~l~  398 (477)
                      .+++|++||+++|++++.-...+.    . .+ .|+.|++.++.+.
T Consensus       396 ~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~-~L~~L~~~~~~~~  440 (461)
T 1z7x_W          396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLVLYDIYWS  440 (461)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC-CCCEEECTTCCCC
T ss_pred             hCCCccEEECCCCCCCHHHHHHHHHHhccCCc-chhheeecccccC
Confidence            777777777777777654222221    1 12 4666666666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.1e-33  Score=268.86  Aligned_cols=247  Identities=28%  Similarity=0.384  Sum_probs=125.5

Q ss_pred             CCCEEEccCCCCCC--CccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739           11 KLLHLDLSLNELQG--ELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus        11 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ++++|++++|.+++  .+|..|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45555555555554  4444555555555555552 44544445555555555555555555544455555555555555


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCC-CCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS-SLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      ++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            5555555444555555555555555555555544555554444 455555555555444444444444 55555555555


Q ss_pred             CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739          167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA  246 (477)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  246 (477)
                      ++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+..+..  +..++                  
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~------------------  268 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG--LTQLK------------------  268 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG--GGGCT------------------
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH--HhcCc------------------
Confidence            444444444555555555555554433332 444444555555555444443333  34444                  


Q ss_pred             CCccCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCc
Q 038739          247 TSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNR  287 (477)
Q Consensus       247 ~~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~  287 (477)
                             +|++|++++|.++ .+|.. ..+++|+.+++++|+
T Consensus       269 -------~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          269 -------FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             -------TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             -------CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence                   4555555555553 44443 556667777777776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.4e-31  Score=258.32  Aligned_cols=288  Identities=18%  Similarity=0.176  Sum_probs=243.2

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ++++++++++.++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            7999999999998 5665554  689999999999998888789999999999999999998889999999999999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc--cCCccccCCCCCcEEECCCCcCCC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG--KVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++.
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            99996 4555544  799999999999997777789999999999999999853  667889999999999999999985


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                       ++..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..++..  
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~--  258 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGG--  258 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCSSCCTT--
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCccCChh--
Confidence             444443  89999999999999888899999999999999999999877654  78899999999999988755442  


Q ss_pred             ccCcCcccEEEccCCCCCCcch-hhh------cCCCcCEEeccCCcccc--cCCccCCcccCCCCCeEEecCCc
Q 038739          249 DTTSQKLKYIGLRSCNLTKFPN-FLQ------NQHHLRFMDLSDNRIQG--KVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p~-~l~------~~~~L~~L~Ls~n~i~~--~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      ...+++|++|++++|.++.++. .+.      ..+.++.|++++|.+..  ..|..+.  .+++++.+++++|+
T Consensus       259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~--~~~~l~~l~L~~N~  330 (330)
T 1xku_A          259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR--CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT--TCCCGGGEEC----
T ss_pred             hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc--cccceeEEEecccC
Confidence            2367899999999999988863 332      24789999999999864  4455665  78999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=5.9e-36  Score=302.52  Aligned_cols=360  Identities=18%  Similarity=0.153  Sum_probs=278.2

Q ss_pred             CCCCEEEcccccCCcccccc-CCCCCCCCEEecccCcCcc----cCCcccCCCCCCCEEeCcCCCCCCcccccc-cCCC-
Q 038739           34 HSLEELDLSANFLSSEWPIS-IGNLSSLKELDLSQNRFFG----ELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLF-  106 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~-  106 (477)
                      ++|++|++++|+++...... +..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+ ..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            57899999999998654433 7889999999999999874    346678889999999999999876444333 3344 


Q ss_pred             ---CccEEEccCCcCcC----CCCccccCCCCCCEEEccCCCCcccCCcccc-----CCCCCcEEECCCCcCCCcC----
Q 038739          107 ---SLEKLDLSFNNFSG----EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG-----NFTQLQYLHLGSNNFSGDL----  170 (477)
Q Consensus       107 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----  170 (477)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999984    4578889999999999999998655443332     3568999999999998643    


Q ss_pred             CcCCCCCCCCCEEEccCCccccccchhhh-----cCCCCCEEeCcCCcCcccc--chhhhhcCCCCCCEEeCCCCCCccc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQITSSLR-----NLSQLTALDLAQNSYRGMI--ELDVLLTSWKNLEFLGLSLNRLSVL  243 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~i~~~  243 (477)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+.+..  .....+..+++|++|++++|.+...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45566789999999999999865554443     3679999999999987642  1122367889999999999977654


Q ss_pred             cccCC----ccCcCcccEEEccCCCCCC-----cchhhhcCCCcCEEeccCCcccccCCccCCc---ccCCCCCeEEecC
Q 038739          244 TKATS----DTTSQKLKYIGLRSCNLTK-----FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD---PNMQNLNGFNFSH  311 (477)
Q Consensus       244 ~~~~~----~~~~~~L~~L~L~~n~l~~-----~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~---~~l~~L~~L~Ls~  311 (477)
                      +....    ...+++|++|++++|.++.     ++..+..+++|++|++++|++.+..+..+..   ...++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            32111    1136799999999999976     6788888999999999999998654443321   0336999999999


Q ss_pred             CcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhc-----cCCCCeEeCCCCcCcc----cCCchhhh
Q 038739          312 NLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICN-----LNILESLVLSHNNLSG----LLPQCLGN  382 (477)
Q Consensus       312 N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~  382 (477)
                      |.+++.....+      .......++|+.|++++|.+++..+..++.     .++|++|+|++|++++    .+|..+..
T Consensus       323 n~l~~~~~~~l------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          323 CSFTAACCSHF------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  396 (461)
T ss_dssp             SCCBGGGHHHH------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHH------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence            99886421100      000012478999999999999876666654     6799999999999997    78888989


Q ss_pred             cccccceeecCCCcCCcc
Q 038739          383 FSDELLVLDLQGNNLPLS  400 (477)
Q Consensus       383 l~~~L~~L~Ls~N~l~~~  400 (477)
                      ++ +|++|++++|++++.
T Consensus       397 ~~-~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          397 NH-SLRELDLSNNCLGDA  413 (461)
T ss_dssp             CC-CCCEEECCSSSCCHH
T ss_pred             CC-CccEEECCCCCCCHH
Confidence            98 999999999999764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.2e-31  Score=259.03  Aligned_cols=287  Identities=19%  Similarity=0.196  Sum_probs=243.9

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            7999999999998 6666553  799999999999998888899999999999999999998889999999999999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc--cCCccccCCCCCcEEECCCCcCCC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG--KVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +|+++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            99996 5555544  799999999999997767779999999999999999953  667778887 99999999999986


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                       +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..++..  
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~--  259 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLSRVPAG--  259 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCCBCCTT--
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCeecChh--
Confidence             444443  78999999999999888889999999999999999999877655  78899999999999988755443  


Q ss_pred             ccCcCcccEEEccCCCCCCcc-hhhhc------CCCcCEEeccCCccc--ccCCccCCcccCCCCCeEEecCCc
Q 038739          249 DTTSQKLKYIGLRSCNLTKFP-NFLQN------QHHLRFMDLSDNRIQ--GKVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p-~~l~~------~~~L~~L~Ls~n~i~--~~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      ...+++|++|++++|.++.++ ..+..      .+.|+.|++++|.+.  +..|..+.  .+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~--~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR--CVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc--ccchhhhhhccccc
Confidence            236789999999999998886 33433      467999999999987  56666676  79999999999885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-32  Score=263.77  Aligned_cols=248  Identities=23%  Similarity=0.370  Sum_probs=166.0

Q ss_pred             CCCCEEEcccccCCc--cccccCCCCCCCCEEeccc-CcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739           34 HSLEELDLSANFLSS--EWPISIGNLSSLKELDLSQ-NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK  110 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  110 (477)
                      .++++|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456667777776666  5666666667777777763 6666666666666666777777666666666666666666666


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCC-CCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT-QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      |++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            66666666666666666666666666666666666666666665 666666666666655555555554 6666666666


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC-Cc
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KF  268 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~-~~  268 (477)
                      +++..+..+..+++|+.|++++|.+.+..+.                            ...+++|++|++++|.++ .+
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------------VGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG----------------------------CCCCTTCCEEECCSSCCEECC
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc----------------------------ccccCCCCEEECcCCcccCcC
Confidence            6555555555555555555555554433221                            123456777777777774 67


Q ss_pred             chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCc
Q 038739          269 PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       269 p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      |..+..+++|++|++++|++++.+|.. .  .+++|+.+++++|+
T Consensus       261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~--~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNK  302 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSS
T ss_pred             ChHHhcCcCCCEEECcCCcccccCCCC-c--cccccChHHhcCCC
Confidence            888888999999999999999888876 4  78888888888887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=252.15  Aligned_cols=280  Identities=18%  Similarity=0.163  Sum_probs=209.6

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      .|+.....+++++.++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4566677888888887 5565554  488888888888887666678888888888888888887777788888888888


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCC-CCcccCCccccCCCCCcEEECCCCc
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSC-GFWGKVPHSIGNFTQLQYLHLGSNN  165 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~  165 (477)
                      ++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888888876555568888888888888888884333 36778888888888888 4655556678888888888888888


Q ss_pred             CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                      +++..+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+.....  +.                    
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~--------------------  243 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE--LS--------------------  243 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc--cc--------------------
Confidence            88777778888888888888888876544444556778888888888776543211  00                    


Q ss_pred             cCCccCcCcccEEEccCCCCC-----CcchhhhcCCCcCEEeccCCcccccCCcc-CCcccCCCCCeEEecCCccccc
Q 038739          246 ATSDTTSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKVPKW-LLDPNMQNLNGFNFSHNLLTGF  317 (477)
Q Consensus       246 ~~~~~~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~~l~~L~~L~Ls~N~l~~~  317 (477)
                        .......++.++++++.++     .+|.++..+++|++|++++|+++ .+|.. +.  .+++|++|++++|++++.
T Consensus       244 --~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~--~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          244 --TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD--RLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT--TCTTCCEEECCSSCBCCC
T ss_pred             --cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh--cCCCCCEEEeeCCCccCc
Confidence              0011234555666666553     46788899999999999999999 55555 35  789999999999988754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.5e-30  Score=250.17  Aligned_cols=261  Identities=19%  Similarity=0.177  Sum_probs=143.4

Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG  162 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  162 (477)
                      +|++|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44444444444443333344444455555555554444444444445555555555555443333334555555555555


Q ss_pred             CCcCCCcCC-cCCCCCCCCCEEEccCC-ccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739          163 SNNFSGDLL-GPIGNLRSLEAINVAKC-NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       163 ~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                      +|.+++... ..+..+++|++|++++| .+++..+..+..+++|++|++++|.+.+..+..  +..              
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~--------------  196 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKS--------------  196 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--TTT--------------
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH--Hhc--------------
Confidence            555553222 24555555555655555 244333445555555555555555554433222  222              


Q ss_pred             ccccccCCccCcCcccEEEccCCCCCCcchh-hhcCCCcCEEeccCCcccccCCccCCc-ccCCCCCeEEecCCcccccC
Q 038739          241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSDNRIQGKVPKWLLD-PNMQNLNGFNFSHNLLTGFD  318 (477)
Q Consensus       241 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~i~~~~p~~~~~-~~l~~L~~L~Ls~N~l~~~~  318 (477)
                                 +++|++|++++|.++.+|.. +..+++|++|++++|++++..+..+.. .....++.++++++.+++  
T Consensus       197 -----------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~--  263 (353)
T 2z80_A          197 -----------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD--  263 (353)
T ss_dssp             -----------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH--
T ss_pred             -----------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC--
Confidence                       23455555555555555433 344677777777777777554433320 134556666666665543  


Q ss_pred             CCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch-hhhcccccceeecCCCcC
Q 038739          319 QHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC-LGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       319 ~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~~L~~L~Ls~N~l  397 (477)
                                                 +.+. .+|..+..+++|+.||+++|+++ .+|.. |..++ +|++|++++|++
T Consensus       264 ---------------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~-~L~~L~L~~N~~  313 (353)
T 2z80_A          264 ---------------------------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT-SLQKIWLHTNPW  313 (353)
T ss_dssp             ---------------------------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCB
T ss_pred             ---------------------------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC-CCCEEEeeCCCc
Confidence                                       2333 46778888888999999999888 55655 57787 888999999988


Q ss_pred             CcccC
Q 038739          398 PLSKG  402 (477)
Q Consensus       398 ~~~~p  402 (477)
                      .+..|
T Consensus       314 ~~~~~  318 (353)
T 2z80_A          314 DCSCP  318 (353)
T ss_dssp             CCCHH
T ss_pred             cCcCC
Confidence            77665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.8e-29  Score=238.38  Aligned_cols=225  Identities=21%  Similarity=0.192  Sum_probs=196.9

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      -++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            368999999888 555444  47899999999999987778899999999999999999988888999999999999999


Q ss_pred             CC-CCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           92 NG-YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        92 n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      |. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            97 76666888999999999999999999877888999999999999999998777777899999999999999998777


Q ss_pred             CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS  241 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~  241 (477)
                      +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..  +..+++|+.|++++|.+.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCcc
Confidence            777889999999999999999888889999999999999999998766544  778888999999888543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.9e-29  Score=242.82  Aligned_cols=227  Identities=21%  Similarity=0.278  Sum_probs=207.2

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      .+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999999998 77878989999999999999999 78888999999999999999998 7898999999999999


Q ss_pred             CcCCCCCCcccccccC---------CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEE
Q 038739           89 LSQNGYFGELPTSIRN---------LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYL  159 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  159 (477)
                      +++|++.+.+|..+..         +++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            9999888888877654         999999999999999 888899999999999999999975 66679999999999


Q ss_pred             ECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCC
Q 038739          160 HLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR  239 (477)
Q Consensus       160 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~  239 (477)
                      ++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..  +..+++++.+++..+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPPHL  312 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCGGG
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999888876  8899999999998774


Q ss_pred             Ccc
Q 038739          240 LSV  242 (477)
Q Consensus       240 i~~  242 (477)
                      +..
T Consensus       313 ~~~  315 (328)
T 4fcg_A          313 QAQ  315 (328)
T ss_dssp             SCC
T ss_pred             HHH
Confidence            433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.6e-29  Score=241.34  Aligned_cols=279  Identities=22%  Similarity=0.259  Sum_probs=213.6

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCccc--CCcccCCCCCCCEEeC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE--LPISMGNLGSLKVLDL   89 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L   89 (477)
                      -+.++.+++.++ .+|..+.  ++|++|++++|+++...+..|.++++|++|++++|.++..  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            367888888887 5565443  6899999999999866666688999999999999988732  3566677899999999


Q ss_pred             cCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      ++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            999885 466778889999999999999986554 578889999999999999988888888899999999999999876


Q ss_pred             -cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739          169 -DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT  247 (477)
Q Consensus       169 -~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  247 (477)
                       ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+.......
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHH
Confidence             56778888999999999999998877888889999999999999988776654  777888888888888766544333


Q ss_pred             CccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccC
Q 038739          248 SDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWL  296 (477)
Q Consensus       248 ~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~  296 (477)
                      ....+++|++|++++|.++..   ......+...+.+....+.+....|..+
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence            322234778888888877422   1111222233334445555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=7.8e-30  Score=243.43  Aligned_cols=237  Identities=26%  Similarity=0.282  Sum_probs=209.9

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCcc--ccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE--WPISIGNLSSLKELDLSQNRFFGELPISMG   79 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   79 (477)
                      +|..+.  ++|++|++++|.++...+..|.++++|++|++++|+++..  .+..+..+++|++|++++|.+. .+|..+.
T Consensus        22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~   98 (306)
T 2z66_A           22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL   98 (306)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred             CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence            565553  6899999999999966666689999999999999999844  2566778999999999999998 5677799


Q ss_pred             CCCCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCc
Q 038739           80 NLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQ  157 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~  157 (477)
                      .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            99999999999999976654 578999999999999999998888899999999999999999976 5788899999999


Q ss_pred             EEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCC-CCCCEEeCC
Q 038739          158 YLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW-KNLEFLGLS  236 (477)
Q Consensus       158 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~ls  236 (477)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+ ++|++|+++
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~  256 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLT  256 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECT
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEcc
Confidence            9999999999888889999999999999999999887778999999999999999999877655  6677 499999999


Q ss_pred             CCCCccc
Q 038739          237 LNRLSVL  243 (477)
Q Consensus       237 ~n~i~~~  243 (477)
                      +|.+...
T Consensus       257 ~N~~~~~  263 (306)
T 2z66_A          257 QNDFACT  263 (306)
T ss_dssp             TCCEECS
T ss_pred             CCCeecc
Confidence            9976543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.1e-28  Score=248.46  Aligned_cols=248  Identities=21%  Similarity=0.166  Sum_probs=211.5

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..+.++.++..++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3578888888888 5665554  689999999999998888899999999999999999998888899999999999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEEECCCCcCCCc
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYLHLGSNNFSGD  169 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~  169 (477)
                      +|+++...+..|..+++|++|++++|.++...+..+..+++|++|++++|...+. .+..|..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9999877777899999999999999999977777889999999999998544344 445688999999999999999864


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                       + .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..  +..+++|+.|++++|+++.++...+ 
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~-  286 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSSLPHDLF-  286 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCTTSS-
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCccChHHh-
Confidence             3 5788899999999999999888999999999999999999998877655  8889999999999998876554332 


Q ss_pred             cCcCcccEEEccCCCCC
Q 038739          250 TTSQKLKYIGLRSCNLT  266 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l~  266 (477)
                      ..+++|+.|++++|.+.
T Consensus       287 ~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEccCCCcC
Confidence            25678999999999873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=6.8e-29  Score=234.40  Aligned_cols=217  Identities=22%  Similarity=0.182  Sum_probs=198.5

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGN   80 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~   80 (477)
                      +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..
T Consensus        26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            45444  4689999999999998887889999999999999999998888899999999999999997 77666889999


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH  160 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  160 (477)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            99999999999999888888999999999999999999977777799999999999999999877777899999999999


Q ss_pred             CCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccch
Q 038739          161 LGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIEL  220 (477)
Q Consensus       161 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  220 (477)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            999999998899999999999999999999987778899999999999999998765543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.1e-32  Score=283.06  Aligned_cols=377  Identities=16%  Similarity=0.093  Sum_probs=197.8

Q ss_pred             CCCCCCEEEccCCCCCCCccccccC-CCC-CCEEEccccc-CCc-cccccCCCCCCCCEEecccCcCccc----CCcccC
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGN-LHS-LEELDLSANF-LSS-EWPISIGNLSSLKELDLSQNRFFGE----LPISMG   79 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~   79 (477)
                      ++++|++|+|++|.+++..+..+.. +++ |++|++++|. ++. .++.....+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            3444555555554444333333333 222 5555554443 110 0111122445555555555544332    112223


Q ss_pred             CCCCCCEEeCcCCCCCC----cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCc---ccCCccccC
Q 038739           80 NLGSLKVLDLSQNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW---GKVPHSIGN  152 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l~~  152 (477)
                      .+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.+...   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            44555555555555431    122233445555555555555542 3444455555555555432211   122234445


Q ss_pred             CCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCC
Q 038739          153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLE  231 (477)
Q Consensus       153 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  231 (477)
                      +++|+.|+++++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.... .......+++|+
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~-l~~~~~~~~~L~  345 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG-LEVLAQYCKQLK  345 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH-HHHHHHHCTTCC
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH-HHHHHHhCCCCC
Confidence            55566666555322 2344455566667777777766553322 335666777777776 3222111 111234566777


Q ss_pred             EEeCCC-----------CCCccccccCCccCcCcccEEEccCCCCCC-cchhhh-cCCCcCEEecc----CCccccc---
Q 038739          232 FLGLSL-----------NRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQ-NQHHLRFMDLS----DNRIQGK---  291 (477)
Q Consensus       232 ~L~ls~-----------n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~-~~~~L~~L~Ls----~n~i~~~---  291 (477)
                      +|++++           +.++..+.......+++|++|+++.+.++. .+..+. .+++|+.|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            777772           323222111111235677777776666643 223333 36777777775    4555542   


Q ss_pred             --CCccCCcccCCCCCeEEecCCc--ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCcc-CCChhhhccCCCCeEe
Q 038739          292 --VPKWLLDPNMQNLNGFNFSHNL--LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG-EIPSWICNLNILESLV  366 (477)
Q Consensus       292 --~p~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~-~~p~~~~~l~~L~~Ld  366 (477)
                        ++..+.  .+++|+.|++++|.  +++....         .+....++|+.|++++|++++ .++..+.++++|++|+
T Consensus       426 ~~~~~~~~--~~~~L~~L~L~~~~~~l~~~~~~---------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          426 NGVRSLLI--GCKKLRRFAFYLRQGGLTDLGLS---------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             HHHHHHHH--HCTTCCEEEEECCGGGCCHHHHH---------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             HHHHHHHH--hCCCCCEEEEecCCCCccHHHHH---------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence              111222  46777777776432  3321100         111235789999999999987 4556668899999999


Q ss_pred             CCCCcCccc-CCchhhhcccccceeecCCCcCCcc
Q 038739          367 LSHNNLSGL-LPQCLGNFSDELLVLDLQGNNLPLS  400 (477)
Q Consensus       367 Ls~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~l~~~  400 (477)
                      |++|.+++. ++..+..++ +|++|++++|+++..
T Consensus       495 l~~n~l~~~~~~~~~~~l~-~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLP-SLRYLWVQGYRASMT  528 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCS-SCCEEEEESCBCCTT
T ss_pred             ccCCCCcHHHHHHHHHhcC-ccCeeECcCCcCCHH
Confidence            999999865 344456787 999999999998765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=245.71  Aligned_cols=247  Identities=20%  Similarity=0.197  Sum_probs=205.2

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..+.++.++..++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3568888888887 5665554  688999999999998888889999999999999999987777889999999999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCC-CcccCCccccCCCCCcEEECCCCcCCCc
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG-FWGKVPHSIGNFTQLQYLHLGSNNFSGD  169 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~  169 (477)
                      +|+++...+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|.++++|++|++++|.++. 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            999987766788899999999999999987777788899999999999854 433344578889999999999999884 


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                      ++ .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..  +..+++|+.|++++|+++.++...+ 
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~-  275 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHNNLTLLPHDLF-  275 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTSCCCCCCTTTT-
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCCCCCccChhHh-
Confidence            34 4788889999999999998888888999999999999999998877655  7888999999999998876654332 


Q ss_pred             cCcCcccEEEccCCCC
Q 038739          250 TTSQKLKYIGLRSCNL  265 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l  265 (477)
                      ..+++|+.|++++|.+
T Consensus       276 ~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SSCTTCCEEECCSSCE
T ss_pred             ccccCCCEEEcCCCCc
Confidence            2467899999999887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.9e-27  Score=246.08  Aligned_cols=268  Identities=22%  Similarity=0.225  Sum_probs=171.2

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            5777777777776 4454443  67777777777776 3444   45677777777777643 443   45667777777


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI  194 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  194 (477)
                      +|.+++ +|.   .+++|+.|++++|.++. +|..   +++|++|++++|.+++. +.   .+++|+.|++++|.++   
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~---  174 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT---  174 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS---
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC---
Confidence            776663 333   34566666666666543 3332   25556666666555532 21   1234455555555444   


Q ss_pred             chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhc
Q 038739          195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN  274 (477)
Q Consensus       195 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~  274 (477)
                                           +..      ..+++|+.|++++|.++.++..     +++|+.|++++|.++.+|..   
T Consensus       175 ---------------------~l~------~~~~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~~---  219 (622)
T 3g06_A          175 ---------------------SLP------MLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPAL---  219 (622)
T ss_dssp             ---------------------CCC------CCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCCC---
T ss_pred             ---------------------CCc------ccCCCCcEEECCCCCCCCCCCc-----cchhhEEECcCCcccccCCC---
Confidence                                 322      1234555555555544433321     24677777777777766642   


Q ss_pred             CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739          275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS  354 (477)
Q Consensus       275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~  354 (477)
                      +++|+.|++++|++++ +|.     .+++|+.|++++|+++.+              |..+++|+.|++++|.++ .+|.
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp~-----~l~~L~~L~Ls~N~L~~l--------------p~~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LPV-----LPSELKELMVSGNRLTSL--------------PMLPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCC--------------CCCCTTCCEEECCSSCCC-SCCG
T ss_pred             CCCCCEEEccCCccCc-CCC-----CCCcCcEEECCCCCCCcC--------------CcccccCcEEeCCCCCCC-cCCH
Confidence            4678888888888774 441     567788888888877743              335677888888888888 7788


Q ss_pred             hhhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739          355 WICNLNILESLVLSHNNLSGLLPQCLGNFS  384 (477)
Q Consensus       355 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  384 (477)
                      .+.++++|+.|+|++|.+++.+|..+..++
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999999999999999999998887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=9.9e-29  Score=237.78  Aligned_cols=212  Identities=27%  Similarity=0.346  Sum_probs=198.4

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      .+|+.+.++++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            47888999999999999999999 88989999999999999999999 67888999999999999999888888887764


Q ss_pred             ---------CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc
Q 038739           81 ---------LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG  151 (477)
Q Consensus        81 ---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~  151 (477)
                               +++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence                     999999999999997 78889999999999999999999 5777899999999999999999999999999


Q ss_pred             CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739          152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       152 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.1e-27  Score=239.16  Aligned_cols=247  Identities=21%  Similarity=0.193  Sum_probs=196.5

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      ..+.++.++..++. +|..+.  +++++|++++|++++..+..|.++++|++|++++|++.+..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35678888887774 554443  678899999998888778888888999999999998887777888888899999999


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC-cCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      +|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99888666667888889999999998887766678888889999999884 45544455688888899999999888754


Q ss_pred             cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhh
Q 038739          194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFL  272 (477)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l  272 (477)
                       + .+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..+....+ ..+++|+.|++++|.++.+| ..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             -c-cccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccChHHh
Confidence             3 4778888999999999888877655  7888899999999887766544332 25678899999999887776 456


Q ss_pred             hcCCCcCEEeccCCccc
Q 038739          273 QNQHHLRFMDLSDNRIQ  289 (477)
Q Consensus       273 ~~~~~L~~L~Ls~n~i~  289 (477)
                      ..+++|+.|++++|.+.
T Consensus       287 ~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEccCCCcC
Confidence            77888999999988776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.3e-27  Score=244.26  Aligned_cols=262  Identities=22%  Similarity=0.229  Sum_probs=183.7

Q ss_pred             CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739           59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR  138 (477)
Q Consensus        59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  138 (477)
                      +++.|++++|.++ .+|..+.  ++|++|++++|+++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            3566666666655 4444443  55666666666554 2333   3445555555555554 2332   33444555554


Q ss_pred             CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739          139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI  218 (477)
Q Consensus       139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  218 (477)
                      +                        |.+++. +.   .+++|+.|++++|++++ +|.   .+++|++|++++|.+.+..
T Consensus       110 ~------------------------N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~  157 (622)
T 3g06_A          110 S------------------------NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP  157 (622)
T ss_dssp             S------------------------CCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred             C------------------------CcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcC
Confidence            4                        444432 11   23455555555555553 222   2367777777777776543


Q ss_pred             chhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCc
Q 038739          219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD  298 (477)
Q Consensus       219 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~  298 (477)
                      .      .+++|+.|++++|.++.++     ..+++|+.|++++|.++.+|..   +++|+.|++++|.++ .+|.    
T Consensus       158 ~------~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~----  218 (622)
T 3g06_A          158 A------LPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA----  218 (622)
T ss_dssp             C------CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC----
T ss_pred             C------ccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC----
Confidence            2      3468999999999887765     2457899999999999988863   589999999999998 4553    


Q ss_pred             ccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739          299 PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       299 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  378 (477)
                       .+++|+.|++++|+++++              |..+++|+.|++++|.++ .+|.   .+++|+.|+|++|+++ .+|.
T Consensus       219 -~~~~L~~L~Ls~N~L~~l--------------p~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTSL--------------PVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCC--------------CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             -CCCCCCEEEccCCccCcC--------------CCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence             358899999999999864              455689999999999999 5665   6789999999999999 7899


Q ss_pred             hhhhcccccceeecCCCcCCcccCC
Q 038739          379 CLGNFSDELLVLDLQGNNLPLSKGC  403 (477)
Q Consensus       379 ~l~~l~~~L~~L~Ls~N~l~~~~p~  403 (477)
                      .+..++ +|+.|++++|++++.+|.
T Consensus       279 ~l~~l~-~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          279 SLIHLS-SETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGGGSC-TTCEEECCSCCCCHHHHH
T ss_pred             HHhhcc-ccCEEEecCCCCCCcCHH
Confidence            999998 999999999999988775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.2e-27  Score=236.92  Aligned_cols=247  Identities=25%  Similarity=0.246  Sum_probs=193.0

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      ..+.++.++..++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567888888777 4554443  678888888888887777888888888888888888877777788888888888888


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC-cCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      +|+++...+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.++. 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence            88888666667888888888888888887776777888888888888884 4444445567888888888888888874 


Q ss_pred             cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhh
Q 038739          194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFL  272 (477)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l  272 (477)
                      +| .+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..+....+ ..+++|++|++++|+++.+| ..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGS--FQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhh--hccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHh
Confidence            34 4777888888888888888776655  7888888888888887766554332 25678888888888887776 456


Q ss_pred             hcCCCcCEEeccCCccc
Q 038739          273 QNQHHLRFMDLSDNRIQ  289 (477)
Q Consensus       273 ~~~~~L~~L~Ls~n~i~  289 (477)
                      ..+++|+.|+|++|.+.
T Consensus       276 ~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SSCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEcCCCCcc
Confidence            77888888888888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=6.5e-30  Score=245.10  Aligned_cols=270  Identities=21%  Similarity=0.130  Sum_probs=160.9

Q ss_pred             CCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC
Q 038739           60 LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS  139 (477)
Q Consensus        60 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  139 (477)
                      ++..+++.+.+.......+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445555665554444445556677777777777766666677777777777777777764433  66677777777777


Q ss_pred             CCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc
Q 038739          140 CGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE  219 (477)
Q Consensus       140 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  219 (477)
                      |.+++.     ...++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQEL-----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEE-----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Cccccc-----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            766432     22366677777776666543332   3556666666666665555555566666666666666555433


Q ss_pred             hhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcc
Q 038739          220 LDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP  299 (477)
Q Consensus       220 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~  299 (477)
                      .. ....+++|++|++++|.++                         .++.. ..+++|++|++++|++++..+ .+.  
T Consensus       162 ~~-~~~~l~~L~~L~L~~N~l~-------------------------~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~--  211 (317)
T 3o53_A          162 AE-LAASSDTLEHLNLQYNFIY-------------------------DVKGQ-VVFAKLKTLDLSSNKLAFMGP-EFQ--  211 (317)
T ss_dssp             GG-GGGGTTTCCEEECTTSCCC-------------------------EEECC-CCCTTCCEEECCSSCCCEECG-GGG--
T ss_pred             HH-HhhccCcCCEEECCCCcCc-------------------------ccccc-cccccCCEEECCCCcCCcchh-hhc--
Confidence            22 1223445555555555333                         33211 124555555555555553322 233  


Q ss_pred             cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc-ccCCc
Q 038739          300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQ  378 (477)
Q Consensus       300 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~  378 (477)
                      .+++|+.|++++|+++                                   .+|..+..+++|+.|++++|.++ +.+|.
T Consensus       212 ~l~~L~~L~L~~N~l~-----------------------------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-----------------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             GGTTCSEEECTTSCCC-----------------------------------EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             ccCcccEEECcCCccc-----------------------------------chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            4555555555555544                                   23555667778888888888887 66777


Q ss_pred             hhhhcccccceeecCC-CcCCcccCCCC
Q 038739          379 CLGNFSDELLVLDLQG-NNLPLSKGCES  405 (477)
Q Consensus       379 ~l~~l~~~L~~L~Ls~-N~l~~~~p~~~  405 (477)
                      .+..++ .|+.+++++ +.+.|..|...
T Consensus       257 ~~~~~~-~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          257 FFSKNQ-RVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             HHHTCH-HHHHHHHHHHHHHHSSSSCCC
T ss_pred             HHhccc-cceEEECCCchhccCCchhcc
Confidence            778887 888888884 45666666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=7.7e-30  Score=244.62  Aligned_cols=239  Identities=19%  Similarity=0.181  Sum_probs=131.3

Q ss_pred             CCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCC
Q 038739           54 IGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK  133 (477)
Q Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  133 (477)
                      +..+++|++|++++|.+++..|..|..+++|++|++++|++++..+  +..+++|++|++++|.+++. +    ..++|+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~  102 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE  102 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence            3334444444444444444434444444455555555544433222  44455555555555554421 1    224555


Q ss_pred             EEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh-hcCCCCCEEeCcCC
Q 038739          134 LLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTALDLAQN  212 (477)
Q Consensus       134 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n  212 (477)
                      +|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            555555555443322   23556666666666665555556666666666666666665555444 35667777777777


Q ss_pred             cCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccc-cc
Q 038739          213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ-GK  291 (477)
Q Consensus       213 ~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~-~~  291 (477)
                      .+.+...    ...+++|++|++++|.++.++..  ...+++|++|++++|.++.+|..+..+++|+.|++++|++. +.
T Consensus       180 ~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          180 FIYDVKG----QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CCCEEEC----CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             cCccccc----ccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            7665532    22356666666666655544332  22445666666666666666666666667777777777666 45


Q ss_pred             CCccCCcccCCCCCeEEec
Q 038739          292 VPKWLLDPNMQNLNGFNFS  310 (477)
Q Consensus       292 ~p~~~~~~~l~~L~~L~Ls  310 (477)
                      +|.++.  .+++|+.++++
T Consensus       254 ~~~~~~--~~~~L~~l~l~  270 (317)
T 3o53_A          254 LRDFFS--KNQRVQTVAKQ  270 (317)
T ss_dssp             HHHHHH--TCHHHHHHHHH
T ss_pred             HHHHHh--ccccceEEECC
Confidence            555554  55666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=8.2e-30  Score=243.84  Aligned_cols=251  Identities=20%  Similarity=0.216  Sum_probs=145.9

Q ss_pred             CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCC-Cccccccc-------CCCCccEEEccCCcCcCCCCccc
Q 038739           55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYF-GELPTSIR-------NLFSLEKLDLSFNNFSGEFPWST  126 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~  126 (477)
                      +..++|++|++++|.+  .+|..+...  |++|++++|++. ..+|..+.       ++++|++|++++|.+++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3344555555555555  344433322  555555555552 22333332       45556666666666655555544


Q ss_pred             --cCCCCCCEEEccCCCCcccCCccccCC-----CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccc--cchh
Q 038739          127 --GNFSSLKLLDLRSCGFWGKVPHSIGNF-----TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ--ITSS  197 (477)
Q Consensus       127 --~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~  197 (477)
                        ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+++..+..+..+++|++|++++|++.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              5555666666666665544 4444444     5666666666666655555666666666666666665443  1222


Q ss_pred             h--hcCCCCCEEeCcCCcCccccchh-hhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhc
Q 038739          198 L--RNLSQLTALDLAQNSYRGMIELD-VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN  274 (477)
Q Consensus       198 l--~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~  274 (477)
                      +  ..+++|++|++++|.+.+..... ..+..+++|++|++++|.+...........+++|++|++++|.++.+|..+. 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            3  56666667777766666332211 1244566777777777765554432333345677777777777777776554 


Q ss_pred             CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccc
Q 038739          275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG  316 (477)
Q Consensus       275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~  316 (477)
                       ++|++|++++|++++. |. +.  .+++|++|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~--~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PD--ELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TT--TSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-Hh--hCCCCCEEeccCCCCCC
Confidence             6788888888888755 55 44  67888888888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.8e-30  Score=243.29  Aligned_cols=252  Identities=19%  Similarity=0.197  Sum_probs=201.5

Q ss_pred             cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCc-ccCCcccC-------CCCCCCEEeCcCCCCCCcccc
Q 038739           29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFF-GELPISMG-------NLGSLKVLDLSQNGYFGELPT  100 (477)
Q Consensus        29 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~  100 (477)
                      .++..++|++|++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       ++++|++|++++|++++.+|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            355667899999999998  556555443  888899999884 45565554       689999999999999888888


Q ss_pred             cc--cCCCCccEEEccCCcCcCCCCccccCC-----CCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc--CC
Q 038739          101 SI--RNLFSLEKLDLSFNNFSGEFPWSTGNF-----SSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD--LL  171 (477)
Q Consensus       101 ~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~  171 (477)
                      .+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  .+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  8899999999999999866 7777766     8999999999999888888899999999999999987654  22


Q ss_pred             cCC--CCCCCCCEEEccCCcccc---ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739          172 GPI--GNLRSLEAINVAKCNFSG---QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA  246 (477)
Q Consensus       172 ~~l--~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  246 (477)
                      ..+  ..+++|++|++++|.+++   .....+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.++.++..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhhh
Confidence            233  788999999999999883   22244567899999999999998866322 255678999999999988755433


Q ss_pred             CCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccccc
Q 038739          247 TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGK  291 (477)
Q Consensus       247 ~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~  291 (477)
                      .   . ++|++|++++|+++.+|. +..+++|++|++++|++++.
T Consensus       272 ~---~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          272 L---P-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             C---C-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             c---c-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence            2   2 689999999999988877 88899999999999998753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.2e-29  Score=262.44  Aligned_cols=371  Identities=14%  Similarity=0.035  Sum_probs=270.4

Q ss_pred             CCCEEEccCCC-CCC-CccccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCc----ccCCcccCC
Q 038739           11 KLLHLDLSLNE-LQG-ELPVSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFF----GELPISMGN   80 (477)
Q Consensus        11 ~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~   80 (477)
                      +|++|++++|. ++. .++.....+++|++|+|++|.+++.    ++..+..+++|++|++++|.++    +.++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            49999999986 221 1222345889999999999988655    3445577899999999999987    234455678


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCc---CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS---GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ  157 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  157 (477)
                      +++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+..+++|+.|+++++.. ..+|..+..+++|+
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR  296 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence            8999999999998865 6788899999999999864332   23445677889999999988643 56777888899999


Q ss_pred             EEECCCCcCCCcCC-cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcC-----------CcCccccchhhhhc
Q 038739          158 YLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ-----------NSYRGMIELDVLLT  225 (477)
Q Consensus       158 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~  225 (477)
                      +|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++           +.+++.. ......
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-~~~l~~  375 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-LIALAQ  375 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-HHHHHH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-HHHHHh
Confidence            99999999765433 3367899999999994433334455567899999999994           4554332 222355


Q ss_pred             CCCCCCEEeCCCCCCccccccCCccCcCcccEEEcc----CCCCCCc------chhhhcCCCcCEEeccCCc--ccccCC
Q 038739          226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR----SCNLTKF------PNFLQNQHHLRFMDLSDNR--IQGKVP  293 (477)
Q Consensus       226 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~----~n~l~~~------p~~l~~~~~L~~L~Ls~n~--i~~~~p  293 (477)
                      .+++|++|+++.+.++..........+++|++|+++    .+.++..      +..+..+++|++|+++.|.  +++..+
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            689999999988766543322222247799999996    6677654      3457789999999998654  666655


Q ss_pred             ccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccC-CChhhhccCCCCeEeCCCCcC
Q 038739          294 KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE-IPSWICNLNILESLVLSHNNL  372 (477)
Q Consensus       294 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~-~p~~~~~l~~L~~LdLs~N~l  372 (477)
                      ..+.. .+++|+.|++++|++++....         .+....++|+.|++++|.+++. ++..+..+++|++|+|++|++
T Consensus       456 ~~~~~-~~~~L~~L~L~~n~l~~~~~~---------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          456 SYIGQ-YSPNVRWMLLGYVGESDEGLM---------EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHHHH-SCTTCCEEEECSCCSSHHHHH---------HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             HHHHH-hCccceEeeccCCCCCHHHHH---------HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence            55442 589999999999998752110         1123467899999999999865 444556799999999999999


Q ss_pred             cccCCchhh-hcccccceeecCCC
Q 038739          373 SGLLPQCLG-NFSDELLVLDLQGN  395 (477)
Q Consensus       373 ~~~~p~~l~-~l~~~L~~L~Ls~N  395 (477)
                      ++.-...+. .+| .+....+..+
T Consensus       526 t~~~~~~l~~~~p-~l~~~~~~~~  548 (592)
T 3ogk_B          526 SMTGQDLMQMARP-YWNIELIPSR  548 (592)
T ss_dssp             CTTCTTGGGGCCT-TEEEEEECCC
T ss_pred             CHHHHHHHHHhCC-CcEEEEecCc
Confidence            876444443 344 6666555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.4e-26  Score=217.38  Aligned_cols=203  Identities=22%  Similarity=0.182  Sum_probs=104.6

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      +|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444455555555555555555554444455555555555555555544444455555555555555


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCC----EEEccCCc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE----AINVAKCN  189 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n~  189 (477)
                      +|.+++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+    .|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            5555544444455555555555555555432 345555555555555555555544444444444444    55555555


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                      +++..+..+. ..+|+.|++++|.+++..+..  +..+++|+.|++++|.+
T Consensus       189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCEECTTSSC-SCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCSSCB
T ss_pred             ccccCccccC-CCcccEEECCCCceeecCHhH--hcccccccEEEccCCcc
Confidence            5543333222 235555555555555443322  45555555566655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=241.41  Aligned_cols=234  Identities=20%  Similarity=0.200  Sum_probs=121.6

Q ss_pred             CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739           59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR  138 (477)
Q Consensus        59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  138 (477)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            44444444444444444444444444444444444433322  444445555555555444211     12455555555


Q ss_pred             CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhh-cCCCCCEEeCcCCcCccc
Q 038739          139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLR-NLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~  217 (477)
                      +|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+.+.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            5555443322   234556666666666555555555566666666666666655555554 566666666666666554


Q ss_pred             cchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccc-ccCCccC
Q 038739          218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ-GKVPKWL  296 (477)
Q Consensus       218 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~-~~~p~~~  296 (477)
                      .+    ...+++|+.|++++|.++.++..  ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+. +.+|.++
T Consensus       185 ~~----~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          185 KG----QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EC----CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cc----cccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            32    22355566666666555443322  12345566666666666556655566666666666666665 4444444


Q ss_pred             CcccCCCCCeEEec
Q 038739          297 LDPNMQNLNGFNFS  310 (477)
Q Consensus       297 ~~~~l~~L~~L~Ls  310 (477)
                      .  .++.|+.++++
T Consensus       259 ~--~l~~L~~l~~~  270 (487)
T 3oja_A          259 S--KNQRVQTVAKQ  270 (487)
T ss_dssp             T--TCHHHHHHHHH
T ss_pred             H--hCCCCcEEecc
Confidence            4  45555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=5.1e-25  Score=206.05  Aligned_cols=202  Identities=21%  Similarity=0.227  Sum_probs=143.4

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..++++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4677888887777 4554443  567888888887776666677777888888888887775555556777778888888


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      +|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            77776665666777777777777777777666666777777777777777776655555677777777777777777665


Q ss_pred             CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                      +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            556666777777777777776555555666666777777666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.3e-25  Score=210.80  Aligned_cols=213  Identities=22%  Similarity=0.169  Sum_probs=157.8

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.++
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence            455553  468888888888876666677788888888888888877666677788888888888888876666777888


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCC-CCccccCCCCCCEEEccCCCCcccCCccccCCCCCc---
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ---  157 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~---  157 (477)
                      ++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+   
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence            8888888888887766665677788888888888887753 577777788888888888887766666666555555   


Q ss_pred             -EEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739          158 -YLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       158 -~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                       +|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence             778888887765554443 34788888888888766666677788888888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.3e-26  Score=233.06  Aligned_cols=233  Identities=24%  Similarity=0.231  Sum_probs=135.7

Q ss_pred             CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      +|++|+|++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            56666666666655555555666666666666666554333  555566666666666553221     12556666666


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCC-CCCCCCEEEccCCccccc
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG-NLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~  193 (477)
                      +|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            6666543332   235566666666666555555556666666666666666655554443 456666666666666543


Q ss_pred             cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC--Ccchh
Q 038739          194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT--KFPNF  271 (477)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~  271 (477)
                      .+  ...+++|+.|++++|.+++.++.   +..+++|+.|++++|.+..++..  ...+++|+.|++++|.+.  .+|.+
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEECTT--CCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cc--cccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCcccchh--hccCCCCCEEEcCCCCCcCcchHHH
Confidence            22  22456666666666666654432   45556666666666655543322  124566777777777775  56777


Q ss_pred             hhcCCCcCEEecc
Q 038739          272 LQNQHHLRFMDLS  284 (477)
Q Consensus       272 l~~~~~L~~L~Ls  284 (477)
                      +..++.|+.++++
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            8888888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.6e-28  Score=251.34  Aligned_cols=378  Identities=16%  Similarity=0.097  Sum_probs=234.9

Q ss_pred             CCCCCCCEEEccCCCCCC---Ccc------------ccccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccC-c
Q 038739            7 GNLSKLLHLDLSLNELQG---ELP------------VSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQN-R   69 (477)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~---~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~   69 (477)
                      ..+++|++|+++++....   ..|            .....+++|++|++++|.+++..+..+. .+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            456777777777764211   111            1124567777777777777665555553 5677777777777 3


Q ss_pred             Cccc-CCcccCCCCCCCEEeCcCCCCCCcccccc----cCCCCccEEEccCCc--CcC-CCCccccCCCCCCEEEccCCC
Q 038739           70 FFGE-LPISMGNLGSLKVLDLSQNGYFGELPTSI----RNLFSLEKLDLSFNN--FSG-EFPWSTGNFSSLKLLDLRSCG  141 (477)
Q Consensus        70 l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~L~~n~  141 (477)
                      ++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  ++. .++.....+++|++|++++|.
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            3321 33334467777777777777654433322    355677777777775  110 011112345777777777763


Q ss_pred             CcccCCccccCCCCCcEEECCCCc--------------------------CC----CcCCcCCCCCCCCCEEEccCCccc
Q 038739          142 FWGKVPHSIGNFTQLQYLHLGSNN--------------------------FS----GDLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       142 ~~~~~~~~l~~l~~L~~L~l~~n~--------------------------l~----~~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      ..+.++..+..+++|++|+++.+.                          +.    +.++..+..+++|++|++++|.++
T Consensus       223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence            323345555566666666654331                          11    122223335789999999999977


Q ss_pred             ccc-chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCC---------CCCccccccCCccCcCcccEEEcc
Q 038739          192 GQI-TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL---------NRLSVLTKATSDTTSQKLKYIGLR  261 (477)
Q Consensus       192 ~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~---------n~i~~~~~~~~~~~~~~L~~L~L~  261 (477)
                      +.. ...+..+++|++|++++| +.. .........+++|+.|++++         +.++..+.......+++|++|.+.
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~  380 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF  380 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence            543 334668999999999988 332 22222345689999999843         323222111111247899999998


Q ss_pred             CCCCCCc-chhh-hcCCCcCEEecc--C----CcccccCC-----ccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          262 SCNLTKF-PNFL-QNQHHLRFMDLS--D----NRIQGKVP-----KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       262 ~n~l~~~-p~~l-~~~~~L~~L~Ls--~----n~i~~~~p-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                      .+.++.. +..+ ..+++|+.|+++  +    +.+++...     ..+.  .+++|+.|++++ .+++.....       
T Consensus       381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l~~~~~~~-------  450 (594)
T 2p1m_B          381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LLTDKVFEY-------  450 (594)
T ss_dssp             ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SCCHHHHHH-------
T ss_pred             cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cccHHHHHH-------
Confidence            8888643 2333 468999999999  4    55552211     1123  678999999977 554321100       


Q ss_pred             CCCCCCCCccceeecCCCcCccCCChhh-hccCCCCeEeCCCCcCcccCCch-hhhcccccceeecCCCcCCc
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIPSWI-CNLNILESLVLSHNNLSGLLPQC-LGNFSDELLVLDLQGNNLPL  399 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~  399 (477)
                        +....++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++..+.. ...++ +|++|++++|+++.
T Consensus       451 --l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          451 --IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSF  520 (594)
T ss_dssp             --HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBH
T ss_pred             --HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCH
Confidence              01125689999999999987666665 67999999999999997655443 34577 99999999999843

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.5e-24  Score=204.84  Aligned_cols=204  Identities=22%  Similarity=0.232  Sum_probs=165.9

Q ss_pred             CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739            6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK   85 (477)
Q Consensus         6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   85 (477)
                      +++++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+  .+.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            678889999999999998 5554553  689999999999988888889999999999999999885433  27888999


Q ss_pred             EEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739           86 VLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN  165 (477)
Q Consensus        86 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  165 (477)
                      +|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            9999999885 667778888899999999999887666778888888899988888877766777888888888888888


Q ss_pred             CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739          166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      ++...+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            88766666777888888888888887 556666667777888887777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=3.2e-24  Score=200.64  Aligned_cols=190  Identities=22%  Similarity=0.211  Sum_probs=172.3

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      +|..+.  +++++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++|.+++..+..|..+
T Consensus        31 ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  108 (270)
T 2o6q_A           31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL  108 (270)
T ss_dssp             CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence            565554  589999999999998877889999999999999999997777778999999999999999997777788999


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL  161 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  161 (477)
                      ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            99999999999998888888999999999999999999776677899999999999999998877778999999999999


Q ss_pred             CCCcCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739          162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      ++|.+++..+..+..+++|+.|++++|.+...
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            99999987777789999999999999988643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.5e-25  Score=206.03  Aligned_cols=201  Identities=20%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ++++|++|++++|.++. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34555566666555542 22 355555666666666655542  245555566666666665554444445555566666


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      ++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            66666555544445555555666666666555444444555555566666555555544444555555555555555555


Q ss_pred             CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc
Q 038739          168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE  219 (477)
Q Consensus       168 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  219 (477)
                      +..+..+..+++|+.|++++|.+.+       .+++|+.++++.|.+.|..+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence            5544445555555555555555442       23345555555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=5.7e-28  Score=251.82  Aligned_cols=378  Identities=15%  Similarity=0.095  Sum_probs=249.4

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCcc---cc------------ccCCCCCCCCEEecccCcCcccCCcc
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE---WP------------ISIGNLSSLKELDLSQNRFFGELPIS   77 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~   77 (477)
                      +.++++++... .....+..+++|++|+++++.....   .|            .....+++|++|++++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            45666665443 3445678899999999999753211   11            12346889999999999988766666


Q ss_pred             cC-CCCCCCEEeCcCC-CCCCc-ccccccCCCCccEEEccCCcCcCCCCccc----cCCCCCCEEEccCCC--Cccc-CC
Q 038739           78 MG-NLGSLKVLDLSQN-GYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWST----GNFSSLKLLDLRSCG--FWGK-VP  147 (477)
Q Consensus        78 ~~-~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~--~~~~-~~  147 (477)
                      +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|.  +... ++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            64 6899999999999 44332 44455589999999999999876554433    367899999999986  2211 12


Q ss_pred             ccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcc--------------------------c----cccchh
Q 038739          148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF--------------------------S----GQITSS  197 (477)
Q Consensus       148 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--------------------------~----~~~~~~  197 (477)
                      ..+..+++|++|++++|...+.++..+..+++|++|+++.+..                          .    +.++..
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~  284 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV  284 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence            2234679999999999832223555666778888887654421                          1    123333


Q ss_pred             hhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccC---------CCCCC-
Q 038739          198 LRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS---------CNLTK-  267 (477)
Q Consensus       198 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~---------n~l~~-  267 (477)
                      +..+++|++|++++|.+.+.. ....+..+++|+.|++++| +...+.......+++|++|++.+         +.++. 
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             HHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            446678888888888755332 2223567788888888876 22111111111467788888833         33432 


Q ss_pred             -cchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEec--C----CcccccCCCCcccCCCCCCCCCCCCccce
Q 038739          268 -FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFS--H----NLLTGFDQHPVVLPGNKGPLPVPPPGTIT  340 (477)
Q Consensus       268 -~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls--~----N~l~~~~~~~~~l~~n~~~~~~~~~~l~~  340 (477)
                       +......+++|+.|+++.|++++..+..+.. .+++|+.|+++  +    +.++......     ....+....++|+.
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~L~~  436 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDI-----GFGAIVEHCKDLRR  436 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHH-----HHHHHHHHCTTCCE
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhh-----HHHHHHhhCCCccE
Confidence             1222345788888888888887655544431 47889999988  3    4444211000     00000122568999


Q ss_pred             eecCCCcCccCCChhhhc-cCCCCeEeCCCCcCcccCCchh-hhcccccceeecCCCcCCccc
Q 038739          341 YLASNNSLTGEIPSWICN-LNILESLVLSHNNLSGLLPQCL-GNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       341 L~ls~n~l~~~~p~~~~~-l~~L~~LdLs~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                      |++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..++ +|++|++++|++++..
T Consensus       437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHH
T ss_pred             EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHH
Confidence            99987 777776677766 8999999999999987666555 5677 9999999999985543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=2.2e-24  Score=197.99  Aligned_cols=205  Identities=17%  Similarity=0.151  Sum_probs=165.9

Q ss_pred             CCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCCCCCCCEEeCcC-CCCCCccc
Q 038739           22 LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGNLGSLKVLDLSQ-NGYFGELP   99 (477)
Q Consensus        22 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~   99 (477)
                      ++ .+|. +.  ++|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            54 5565 33  488999999999987777788889999999999996 7766666888889999999998 88876666


Q ss_pred             ccccCCCCccEEEccCCcCcCCCCccccCCCCCC---EEEccCC-CCcccCCccccCCCCCc-EEECCCCcCCCcCCcCC
Q 038739          100 TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK---LLDLRSC-GFWGKVPHSIGNFTQLQ-YLHLGSNNFSGDLLGPI  174 (477)
Q Consensus       100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l  174 (477)
                      ..|.++++|++|++++|.+++ +|. +..+++|+   +|++++| .+.+..+..|..+++|+ +|++++|.++...+..+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            788889999999999999885 665 77888888   9999999 88777667788899999 99999999885444445


Q ss_pred             CCCCCCCEEEccCCc-cccccchhhhcC-CCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC
Q 038739          175 GNLRSLEAINVAKCN-FSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN  238 (477)
Q Consensus       175 ~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  238 (477)
                      .. ++|++|++++|+ +++..+..+..+ ++|+.|++++|.+++..+     ..+++|+.|+++++
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIARNT  236 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEECTTC
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-----hHhccCceeeccCc
Confidence            44 789999999994 887667788888 899999999999886553     25788999998876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=5.1e-24  Score=199.42  Aligned_cols=191  Identities=23%  Similarity=0.212  Sum_probs=173.0

Q ss_pred             ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739            4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS   83 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   83 (477)
                      +.++.+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            4578899999999999999863  37999999999999999999888888999999999999999999877778999999


Q ss_pred             CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCC
Q 038739           84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGS  163 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  163 (477)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            99999999999887777889999999999999999987777789999999999999999988888899999999999999


Q ss_pred             CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC
Q 038739          164 NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ  203 (477)
Q Consensus       164 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  203 (477)
                      |.+.+       .++.|+.++++.|.++|.+|.+++.++.
T Consensus       215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          215 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             SCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            98864       3668999999999999999988776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3e-23  Score=195.86  Aligned_cols=203  Identities=22%  Similarity=0.190  Sum_probs=161.8

Q ss_pred             cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCc
Q 038739           29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSL  108 (477)
Q Consensus        29 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  108 (477)
                      .+.+++++++++++++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+  ...+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            46778899999999999884 444443  688999999999987778888999999999999998865433  3788899


Q ss_pred             cEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739          109 EKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC  188 (477)
Q Consensus       109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  188 (477)
                      ++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999988 67778888889999999999888777778888888999999998888777777788888888888888


Q ss_pred             ccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739          189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       189 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                      ++++..+..+..+++|+.|++++|++..... .  +...++|+.+++++|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-~--~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPK-G--FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-T--TTTTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccCh-h--hcccccCCeEEeCCCCc
Confidence            8886666667778888888888888875433 2  34455677777777743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=2.9e-25  Score=216.83  Aligned_cols=264  Identities=14%  Similarity=0.136  Sum_probs=139.3

Q ss_pred             EEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCccc----ccccCCC-CccEEEccCCcCcCCCCccccCC-----CC
Q 038739           62 ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELP----TSIRNLF-SLEKLDLSFNNFSGEFPWSTGNF-----SS  131 (477)
Q Consensus        62 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~  131 (477)
                      ++++++|.+++.+|..+...++|++|++++|.+++..+    +.+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            34566666666666555555557777777776655444    4555666 66666666666665545444432     56


Q ss_pred             CCEEEccCCCCcccCCcc----ccCC-CCCcEEECCCCcCCCcCCcCC----CC-CCCCCEEEccCCcccccc----chh
Q 038739          132 LKLLDLRSCGFWGKVPHS----IGNF-TQLQYLHLGSNNFSGDLLGPI----GN-LRSLEAINVAKCNFSGQI----TSS  197 (477)
Q Consensus       132 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~  197 (477)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            666666666665444432    2223 555666666655554333222    11 235555555555554322    222


Q ss_pred             hhcCC-CCCEEeCcCCcCccccchh--hhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCC-----cc
Q 038739          198 LRNLS-QLTALDLAQNSYRGMIELD--VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-----FP  269 (477)
Q Consensus       198 l~~l~-~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-----~p  269 (477)
                      +..++ +|++|++++|.+.+..+..  ..+..++                        ++|++|++++|.++.     ++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~------------------------~~L~~L~Ls~N~i~~~~~~~l~  217 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIP------------------------ASVTSLDLSANLLGLKSYAELA  217 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC------------------------TTCCEEECTTSCGGGSCHHHHH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCC------------------------CCCCEEECCCCCCChhHHHHHH
Confidence            23332 4555555554444332211  0112221                        245555555555543     45


Q ss_pred             hhhhc-CCCcCEEeccCCcccccCCc----cCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecC
Q 038739          270 NFLQN-QHHLRFMDLSDNRIQGKVPK----WLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLAS  344 (477)
Q Consensus       270 ~~l~~-~~~L~~L~Ls~n~i~~~~p~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls  344 (477)
                      ..+.. .++|++|++++|++++..+.    .+.  .+++|+.|++++|.+.+.....                       
T Consensus       218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~-----------------------  272 (362)
T 3goz_A          218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQ-----------------------  272 (362)
T ss_dssp             HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHH-----------------------
T ss_pred             HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHH-----------------------
Confidence            55555 45788888888888765442    222  5677888888887754331100                       


Q ss_pred             CCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739          345 NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ  378 (477)
Q Consensus       345 ~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  378 (477)
                          ...++..+..+++|+.||+++|++.+..+.
T Consensus       273 ----~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          273 ----CKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             ----HHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             ----HHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence                012233455666677777777777655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=2e-25  Score=218.00  Aligned_cols=178  Identities=21%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc----ccCCCCC-CCCEEecccCcCcccCCcccCCC-----CC
Q 038739           14 HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP----ISIGNLS-SLKELDLSQNRFFGELPISMGNL-----GS   83 (477)
Q Consensus        14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~   83 (477)
                      ++++++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677778877777666666668888888888776655    5666777 78888888887776555555543     77


Q ss_pred             CCEEeCcCCCCCCccccc----ccCC-CCccEEEccCCcCcCCCCcccc----C-CCCCCEEEccCCCCcccCC----cc
Q 038739           84 LKVLDLSQNGYFGELPTS----IRNL-FSLEKLDLSFNNFSGEFPWSTG----N-FSSLKLLDLRSCGFWGKVP----HS  149 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~~----~~  149 (477)
                      |++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.++...+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777777777776554443    3333 6777777777777654443322    2 2466666666666653322    22


Q ss_pred             ccCCC-CCcEEECCCCcCCCcCCcCC----CCC-CCCCEEEccCCccc
Q 038739          150 IGNFT-QLQYLHLGSNNFSGDLLGPI----GNL-RSLEAINVAKCNFS  191 (477)
Q Consensus       150 l~~l~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~  191 (477)
                      +..++ +|++|++++|.+++..+..+    ..+ ++|++|++++|.++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            23333 55555555555554333222    222 34555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=8.4e-24  Score=194.04  Aligned_cols=196  Identities=15%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-CCCcccccccCCCCccEEEccC-CcCcCCCCccccCCCCCCEEE
Q 038739           59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEKLDLSF-NNFSGEFPWSTGNFSSLKLLD  136 (477)
Q Consensus        59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  136 (477)
                      +|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55555555555554444455555555555555554 4443334555555555555555 555544444555555555555


Q ss_pred             ccCCCCcccCCccccCCCCCc---EEECCCC-cCCCcCCcCCCCCCCCC-EEEccCCccccccchhhhcCCCCCEEeCcC
Q 038739          137 LRSCGFWGKVPHSIGNFTQLQ---YLHLGSN-NFSGDLLGPIGNLRSLE-AINVAKCNFSGQITSSLRNLSQLTALDLAQ  211 (477)
Q Consensus       137 L~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  211 (477)
                      +++|.+++ +|. +..+++|+   +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            55555543 333 55555555   5555555 55544444455555555 5555555555222223333 5555555555


Q ss_pred             Cc-CccccchhhhhcCC-CCCCEEeCCCCCCccccccCCccCcCcccEEEccCC
Q 038739          212 NS-YRGMIELDVLLTSW-KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC  263 (477)
Q Consensus       212 n~-l~~~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n  263 (477)
                      |+ +.+..+..  +..+ ++|+.|++++|+++.++..    .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~--~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDA--FGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTT--TTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred             CCCcccCCHHH--hhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence            53 55443332  4455 5555555555555433322    2345555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.1e-25  Score=221.93  Aligned_cols=245  Identities=16%  Similarity=0.155  Sum_probs=178.2

Q ss_pred             CccccccCCCCCCEEEcccccCCcccc----ccCCCCCCCCEEecccCc---CcccCCccc-------CCCCCCCEEeCc
Q 038739           25 ELPVSVGNLHSLEELDLSANFLSSEWP----ISIGNLSSLKELDLSQNR---FFGELPISM-------GNLGSLKVLDLS   90 (477)
Q Consensus        25 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~Ls   90 (477)
                      .++..+..+++|++|+|++|.++...+    ..+..+++|++|++++|.   +++.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            355567778888888888888876533    347788888899888864   344455444       678889999999


Q ss_pred             CCCCCC----cccccccCCCCccEEEccCCcCcCCCCcccc----CC---------CCCCEEEccCCCCc-ccCC---cc
Q 038739           91 QNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG----NF---------SSLKLLDLRSCGFW-GKVP---HS  149 (477)
Q Consensus        91 ~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~~~-~~~~---~~  149 (477)
                      +|.+..    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|.++ ..++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            998876    3667788888999999999888643333333    33         88999999999886 3333   35


Q ss_pred             ccCCCCCcEEECCCCcCCC-----cCCcCCCCCCCCCEEEccCCccc----cccchhhhcCCCCCEEeCcCCcCccccch
Q 038739          150 IGNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFS----GQITSSLRNLSQLTALDLAQNSYRGMIEL  220 (477)
Q Consensus       150 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  220 (477)
                      +..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    ..++..+..+++|++|++++|.+.+....
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            6678899999999998873     23336778889999999999886    55677888899999999999988765221


Q ss_pred             --hhhh--cCCCCCCEEeCCCCCCccccc--cCCc--cCcCcccEEEccCCCCCCcc
Q 038739          221 --DVLL--TSWKNLEFLGLSLNRLSVLTK--ATSD--TTSQKLKYIGLRSCNLTKFP  269 (477)
Q Consensus       221 --~~~~--~~~~~L~~L~ls~n~i~~~~~--~~~~--~~~~~L~~L~L~~n~l~~~p  269 (477)
                        ...+  ..+++|+.|++++|.+...+.  .+..  ..+++|++|++++|.++...
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              1123  348899999999997765211  1111  13578999999999986554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.3e-25  Score=221.27  Aligned_cols=239  Identities=21%  Similarity=0.257  Sum_probs=170.8

Q ss_pred             ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCC---CCcccccc-------cCCCCccEEEccC
Q 038739           50 WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGY---FGELPTSI-------RNLFSLEKLDLSF  115 (477)
Q Consensus        50 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~Ls~  115 (477)
                      ++..+..+++|++|++++|.+...    ++..+..+++|++|++++|.+   ++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            445677889999999999999865    334578899999999999744   44455444       7899999999999


Q ss_pred             CcCcC----CCCccccCCCCCCEEEccCCCCcccCCccc----cCC---------CCCcEEECCCCcCCC-cCC---cCC
Q 038739          116 NNFSG----EFPWSTGNFSSLKLLDLRSCGFWGKVPHSI----GNF---------TQLQYLHLGSNNFSG-DLL---GPI  174 (477)
Q Consensus       116 n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l---------~~L~~L~l~~n~l~~-~~~---~~l  174 (477)
                      |.++.    .+|..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|.++. .++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99986    366778899999999999999965444333    334         899999999999973 333   356


Q ss_pred             CCCCCCCEEEccCCcccc-----ccchhhhcCCCCCEEeCcCCcCc----cccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          175 GNLRSLEAINVAKCNFSG-----QITSSLRNLSQLTALDLAQNSYR----GMIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       175 ~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                      ..+++|++|++++|.++.     ..+..+..+++|++|++++|.+.    ...+.  .+..+++|+.|++++|.+...+.
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhhH
Confidence            678999999999999973     23337889999999999999986    22232  36778888888888886654422


Q ss_pred             cCCc-----cCcCcccEEEccCCCCCC-----cchhh-hcCCCcCEEeccCCcccc
Q 038739          246 ATSD-----TTSQKLKYIGLRSCNLTK-----FPNFL-QNQHHLRFMDLSDNRIQG  290 (477)
Q Consensus       246 ~~~~-----~~~~~L~~L~L~~n~l~~-----~p~~l-~~~~~L~~L~Ls~n~i~~  290 (477)
                      ....     ..+++|++|++++|.++.     +|..+ .++++|++|++++|++++
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            2110     113445555555555543     44444 334555555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=8.5e-23  Score=188.76  Aligned_cols=180  Identities=22%  Similarity=0.206  Sum_probs=125.7

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..++++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4567777777777 4554444  577777777777777766677777777777777777776666667777777777777


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      +|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            77776666666777777777777777777555555666777777777777776555556666677777777777776655


Q ss_pred             CcCCCCCCCCCEEEccCCccccc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      +..+..+++|++|++++|.+...
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            55666666666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=4.5e-24  Score=203.80  Aligned_cols=225  Identities=17%  Similarity=0.149  Sum_probs=159.5

Q ss_pred             CCCCEEEcccccCCccccc---cCCCCCCCCEEecccCcCcccCCccc--CCCCCCCEEeCcCCCCCCccc----ccccC
Q 038739           34 HSLEELDLSANFLSSEWPI---SIGNLSSLKELDLSQNRFFGELPISM--GNLGSLKVLDLSQNGYFGELP----TSIRN  104 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~  104 (477)
                      ..++.+.+.++.++...-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4577788877766532111   12234668888888888887777777  788888888888888876544    34456


Q ss_pred             CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc--C--CccccCCCCCcEEECCCCcCCCcCC--c-CCCCC
Q 038739          105 LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK--V--PHSIGNFTQLQYLHLGSNNFSGDLL--G-PIGNL  177 (477)
Q Consensus       105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~l  177 (477)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++....  . .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            78888888888888877777888888888888888876542  1  2334677888888888888863211  1 24567


Q ss_pred             CCCCEEEccCCccccccchhhhcC---CCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCc
Q 038739          178 RSLEAINVAKCNFSGQITSSLRNL---SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK  254 (477)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~  254 (477)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|.++.... .  +  .++|+.|++++|+++.++.   ...+++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~--~--~~~L~~L~Ls~N~l~~~~~---~~~l~~  295 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-G--L--PAKLRVLDLSSNRLNRAPQ---PDELPE  295 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-C--C--CSCCSCEECCSCCCCSCCC---TTSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-h--h--cCCCCEEECCCCcCCCCch---hhhCCC
Confidence            888888888888887766666655   688888888888874432 2  2  3788888888887775533   235678


Q ss_pred             ccEEEccCCCCC
Q 038739          255 LKYIGLRSCNLT  266 (477)
Q Consensus       255 L~~L~L~~n~l~  266 (477)
                      |+.|++++|.++
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            888888888875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=2.7e-23  Score=198.02  Aligned_cols=196  Identities=22%  Similarity=0.294  Sum_probs=128.4

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      +..+++|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|++|++++|++.+.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            44556677777777766642 3 466667777777777766633 32 66677777777777776543  3466677777


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      +|++++|.+++ ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            77777777663 33 26667777777777777654332  6667777777777777765332  6667777777777777


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL  243 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  243 (477)
                      +++..+  +..+++|++|++++|.+.+..+    +..+++|+.|++++|.++..
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEECC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeeecC
Confidence            765433  6677777777777777776553    56677777777777765443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=9.6e-24  Score=201.50  Aligned_cols=226  Identities=21%  Similarity=0.202  Sum_probs=182.5

Q ss_pred             CCCCEEEccCCCCCCCccc---cccCCCCCCEEEcccccCCccccccC--CCCCCCCEEecccCcCcccCC----cccCC
Q 038739           10 SKLLHLDLSLNELQGELPV---SVGNLHSLEELDLSANFLSSEWPISI--GNLSSLKELDLSQNRFFGELP----ISMGN   80 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~   80 (477)
                      ..++.+.+.++.++.....   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4578899998877532111   12345779999999999998888887  899999999999999986544    34567


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCC--C--CccccCCCCCCEEEccCCCCcccC--Cc-cccCC
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE--F--PWSTGNFSSLKLLDLRSCGFWGKV--PH-SIGNF  153 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~L~~n~~~~~~--~~-~l~~l  153 (477)
                      +++|++|++++|++.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++...  +. .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            89999999999999888888999999999999999997642  2  233468899999999999995321  11 35788


Q ss_pred             CCCcEEECCCCcCCCcCCcCCCCC---CCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCC
Q 038739          154 TQLQYLHLGSNNFSGDLLGPIGNL---RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNL  230 (477)
Q Consensus       154 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  230 (477)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++...    +..+++|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L  296 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEV  296 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCc
Confidence            999999999999998877777766   69999999999998 5566553  799999999999997633    5678999


Q ss_pred             CEEeCCCCCCcc
Q 038739          231 EFLGLSLNRLSV  242 (477)
Q Consensus       231 ~~L~ls~n~i~~  242 (477)
                      +.|++++|+++.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999997754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=6.9e-25  Score=211.92  Aligned_cols=251  Identities=18%  Similarity=0.174  Sum_probs=142.2

Q ss_pred             CCEEEcccccCCccccccCCCC--CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEE
Q 038739           36 LEELDLSANFLSSEWPISIGNL--SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLD  112 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~  112 (477)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            555666555544   2334444  5566666666655544333 34456666666666655433 445555666666666


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCC-CCccc-CCccccCCCCCcEEECCCC-cCCCc-CCcCCCCCC-CCCEEEccC
Q 038739          113 LSFNNFSGEFPWSTGNFSSLKLLDLRSC-GFWGK-VPHSIGNFTQLQYLHLGSN-NFSGD-LLGPIGNLR-SLEAINVAK  187 (477)
Q Consensus       113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~~  187 (477)
                      +++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            6666655555555555666666666666 44432 3444556666666666666 55542 344455566 666777766


Q ss_pred             C--ccc-cccchhhhcCCCCCEEeCcCCc-CccccchhhhhcCCCCCCEEeCCCCCCccccccC--CccCcCcccEEEcc
Q 038739          188 C--NFS-GQITSSLRNLSQLTALDLAQNS-YRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT--SDTTSQKLKYIGLR  261 (477)
Q Consensus       188 n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~--~~~~~~~L~~L~L~  261 (477)
                      |  .++ +.++..+..+++|++|++++|. +++.....  +..+++|+.|++++|.  ......  ....+++|++|+++
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECT
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEecc
Confidence            6  343 3445556667777777777776 44333333  5566777777777773  111111  11246678888888


Q ss_pred             CCCCCCcchhhhcC-CCcCEEeccCCcccccCCccCC
Q 038739          262 SCNLTKFPNFLQNQ-HHLRFMDLSDNRIQGKVPKWLL  297 (477)
Q Consensus       262 ~n~l~~~p~~l~~~-~~L~~L~Ls~n~i~~~~p~~~~  297 (477)
                      +| ++.-  .+..+ ..+..|++++|++++..|..+.
T Consensus       281 ~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          281 GI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             Cc-cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence            77 4221  12222 2355566889999988887765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.2e-22  Score=184.92  Aligned_cols=181  Identities=19%  Similarity=0.207  Sum_probs=150.3

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEc
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDL  113 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  113 (477)
                      ...++++++++.++. +|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            456789999988884 554443  58899999999998877778889999999999999998877778888999999999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739          114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      ++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999877777788888999999999988776666778888889999988888877666788888888888888888877


Q ss_pred             cchhhhcCCCCCEEeCcCCcCccc
Q 038739          194 ITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                      .+..+..+++|+.|++++|.+.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            777788888888888888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=9.3e-24  Score=203.97  Aligned_cols=258  Identities=17%  Similarity=0.199  Sum_probs=174.8

Q ss_pred             CCCEEeCcCCCCCCcccccccCC--CCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEE
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNL--FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYL  159 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L  159 (477)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4778888888764   4455555  7888888888888765554 45677888888888777654 56667777777777


Q ss_pred             ECCCCcCCCcCCcCCCCCCCCCEEEccCC-ccccc-cchhhhcCCCCCEEeCcCC-cCccccchhhhhcCCC-CCCEEeC
Q 038739          160 HLGSNNFSGDLLGPIGNLRSLEAINVAKC-NFSGQ-ITSSLRNLSQLTALDLAQN-SYRGMIELDVLLTSWK-NLEFLGL  235 (477)
Q Consensus       160 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~-~L~~L~l  235 (477)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++... ...+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEEe
Confidence            77777776666666666777777777777 55542 4555666777777777777 6554211 11234445 5555555


Q ss_pred             CCCCCccccccCCccCcCcccEEEccCCCC--CCcchhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCeEEecCC
Q 038739          236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNL--TKFPNFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNGFNFSHN  312 (477)
Q Consensus       236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~L~Ls~N  312 (477)
                      ++|.+                       .+  ..+|..+..+++|++|++++|. +++..+..+.  .+++|+.|++++|
T Consensus       203 ~~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~  257 (336)
T 2ast_B          203 SGYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLSLSRC  257 (336)
T ss_dssp             CSCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTC
T ss_pred             CCCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCCEeeCCCC
Confidence            55411                       22  2356667788999999999998 7767777776  7888888888887


Q ss_pred             cccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeec
Q 038739          313 LLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL  392 (477)
Q Consensus       313 ~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~L  392 (477)
                      .  +                               ++......++++++|+.|++++| ++.   ..+..+...+..|++
T Consensus       258 ~--~-------------------------------~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l  300 (336)
T 2ast_B          258 Y--D-------------------------------IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQI  300 (336)
T ss_dssp             T--T-------------------------------CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEE
T ss_pred             C--C-------------------------------CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEE
Confidence            4  1                               11111235778999999999999 432   245555435888899


Q ss_pred             CCCcCCcccCCCCCC
Q 038739          393 QGNNLPLSKGCESGE  407 (477)
Q Consensus       393 s~N~l~~~~p~~~~~  407 (477)
                      ++|++++..|...+.
T Consensus       301 ~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          301 NCSHFTTIARPTIGN  315 (336)
T ss_dssp             SCCCSCCTTCSSCSS
T ss_pred             ecccCccccCCcccc
Confidence            999999988876543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=1.4e-22  Score=193.11  Aligned_cols=191  Identities=23%  Similarity=0.323  Sum_probs=89.0

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            4445555555555442 22 34445555555555555543322  4455555555555555442 12 344455555555


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +++|++++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            555554332 1 24445555555555555542211  4444555555555554433221  4445555555555555543


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                      ..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.+.
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            221  444455555555555554332  1444555555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=1.3e-21  Score=189.93  Aligned_cols=241  Identities=18%  Similarity=0.143  Sum_probs=157.5

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC-cccCCCCCCCE-EeCc
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKV-LDLS   90 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls   90 (477)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            67888888888 666555  3678899999998887666778888999999999988765444 46778888765 5566


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC-CCCcccCCccccCCC-CCcEEECCCCcCCC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS-CGFWGKVPHSIGNFT-QLQYLHLGSNNFSG  168 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~  168 (477)
                      +|+++...|+.|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            7888777778888888888888888888866555666666777777765 345444444555553 46777777777764


Q ss_pred             cCCcCCCCCCCCCEEEccC-CccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739          169 DLLGPIGNLRSLEAINVAK-CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT  247 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~  247 (477)
                      ..+..+ ...+|+++++++ |.++...+..|..+++|++|++++|+++...+     ..+.+|+.|.+.++         
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~---------  233 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARST---------  233 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTC---------
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccC---------
Confidence            433333 345667777664 44443333455666666666666666554432     12333333333332         


Q ss_pred             CccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCc
Q 038739          248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNR  287 (477)
Q Consensus       248 ~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~  287 (477)
                                     +.++.+|. +..+++|+.++++++.
T Consensus       234 ---------------~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          234 ---------------YNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             ---------------TTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             ---------------CCcCcCCC-chhCcChhhCcCCCCc
Confidence                           22355553 5667777777776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-21  Score=173.52  Aligned_cols=181  Identities=21%  Similarity=0.169  Sum_probs=150.1

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            67888888887 445433  468999999999998777777889999999999999998666667888999999999999


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG  172 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  172 (477)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            9987766778889999999999999987666678889999999999999887766678888999999999987653    


Q ss_pred             CCCCCCCCCEEEccCCccccccchhhhcCCC
Q 038739          173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQ  203 (477)
Q Consensus       173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  203 (477)
                         .+++|+.|+++.|.+++.+|..++.++.
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence               4567888899999999888887776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2e-21  Score=174.15  Aligned_cols=169  Identities=24%  Similarity=0.202  Sum_probs=149.9

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      +|..+  .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+
T Consensus        22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence            45444  4689999999999998777788999999999999999998777778999999999999999997777778999


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL  161 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  161 (477)
                      ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+       .+++|++|++
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~  172 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE  172 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence            999999999999987777778999999999999999997777778999999999999997743       4578999999


Q ss_pred             CCCcCCCcCCcCCCCCCC
Q 038739          162 GSNNFSGDLLGPIGNLRS  179 (477)
Q Consensus       162 ~~n~l~~~~~~~l~~l~~  179 (477)
                      +.|.+++.+|..++.++.
T Consensus       173 ~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHCTTTBBCTTSSBCT
T ss_pred             HHHhCCceeeccCccccC
Confidence            999999999988877665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=1.8e-21  Score=188.98  Aligned_cols=229  Identities=20%  Similarity=0.111  Sum_probs=177.9

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc-ccCCCCCCCCE-EecccCcCcccCCccc
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-ISIGNLSSLKE-LDLSQNRFFGELPISM   78 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~n~l~~~~~~~~   78 (477)
                      +||..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++.|+++...|..|
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence            367766  3689999999999996666789999999999999999876555 57899999876 5667799998888999


Q ss_pred             CCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC-CcCcCCCCccccCCC-CCCEEEccCCCCcccCCccccCCCCC
Q 038739           79 GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF-NNFSGEFPWSTGNFS-SLKLLDLRSCGFWGKVPHSIGNFTQL  156 (477)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L  156 (477)
                      ..+++|++|++++|++....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++.. +.......+|
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L  179 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQL  179 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEE
T ss_pred             hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-Chhhccccch
Confidence            9999999999999999877666777778899999966 567655555666664 688999999999654 4444456789


Q ss_pred             cEEECCC-CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739          157 QYLHLGS-NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL  235 (477)
Q Consensus       157 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l  235 (477)
                      +++++.+ |.++...+..|..+++|++|++++|+++...+..   +.+|+.|.+.++.--...|   .+..+++|+.+++
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP---~l~~l~~L~~l~l  253 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP---TLEKLVALMEASL  253 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---CTTTCCSCCEEEC
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---CchhCcChhhCcC
Confidence            9999985 6677655567899999999999999998554443   5567777665553322222   1566777888877


Q ss_pred             CCC
Q 038739          236 SLN  238 (477)
Q Consensus       236 s~n  238 (477)
                      +++
T Consensus       254 ~~~  256 (350)
T 4ay9_X          254 TYP  256 (350)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=3.4e-20  Score=189.54  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             ceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739          339 ITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS  384 (477)
Q Consensus       339 ~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~  384 (477)
                      +.|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            66666666666 5788888899999999999999999998887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=7.9e-20  Score=186.86  Aligned_cols=183  Identities=23%  Similarity=0.275  Sum_probs=146.7

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      +|++|++++|.+++ +|..+  +++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999986 66555  378999999999998 455   457899999999999986 666 654  89999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL  170 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  170 (477)
                      +|++++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            999876 555   67899999999999985 665   56889999999999876 666 65  88999999999988 45


Q ss_pred             CcCCCCCCCC-------CEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh
Q 038739          171 LGPIGNLRSL-------EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD  221 (477)
Q Consensus       171 ~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  221 (477)
                      |. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            55 543  67       99999999998 56777777999999999999988766544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=9e-20  Score=164.73  Aligned_cols=152  Identities=24%  Similarity=0.246  Sum_probs=92.7

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      +.++++++.++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666666 4444333  46666777666666655556666666666666666666555666666666666666666


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      +++...+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            665444445566666666666666666555555666666666666666655554445555555555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=2.8e-20  Score=175.59  Aligned_cols=173  Identities=24%  Similarity=0.292  Sum_probs=116.7

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      +..+++|++|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|++++ + ..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            44566777777777776644 2 36667777777777777764333  6677777777777777654 2 2366777777


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      +|++++|++++ + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus       116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            77777777764 2 3566677777777777777554  456777777777777777775443  6677777777777777


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCcc
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      +++. + .+..+++|+.|++++|.+..
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            7643 3 36777777777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=163.60  Aligned_cols=152  Identities=21%  Similarity=0.183  Sum_probs=92.3

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc-ccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      +++++++|.++ .+|..+.  +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46667776666 3444332  345667777776665533 3456666666666666666655555666666666666666


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      |++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6666555555666666666666666666555555666666666666666665555555555555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=7.9e-20  Score=172.49  Aligned_cols=186  Identities=22%  Similarity=0.267  Sum_probs=114.0

Q ss_pred             EEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcC
Q 038739           39 LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF  118 (477)
Q Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  118 (477)
                      +.+..+.+++..  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            344444444332  23456667777777776653 22 35666677777777776654433  66667777777777766


Q ss_pred             cCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh
Q 038739          119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL  198 (477)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  198 (477)
                      ++ ++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +
T Consensus       103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            63 22 366667777777777766543  3466666777777777766653  456666677777777776665433  6


Q ss_pred             hcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcc
Q 038739          199 RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV  242 (477)
Q Consensus       199 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~  242 (477)
                      ..+++|+.|++++|.+.+...    +..+++|+.|++++|++..
T Consensus       175 ~~l~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCccCEEECCCCcCCCChh----hccCCCCCEEECcCCcccC
Confidence            666777777777776665432    5566677777777665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=8.1e-20  Score=178.00  Aligned_cols=177  Identities=23%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccC-CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMG-NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      +++++++++++. +|..+.  +.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            344555544442 232221  2345555555555444444444 455555555555555444444455555555555555


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCC---CCCCCCCEEEccCCcccc
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI---GNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~  192 (477)
                      |++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+++..+..+   ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            55554444445555555555555555555445555555555555555555554333333   346666777777776665


Q ss_pred             ccchhhhcCCC--CCEEeCcCCcCcc
Q 038739          193 QITSSLRNLSQ--LTALDLAQNSYRG  216 (477)
Q Consensus       193 ~~~~~l~~l~~--L~~L~L~~n~l~~  216 (477)
                      ..+..+..++.  ++.|++++|.+..
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cCHHHhhhccHhhcceEEecCCCccC
Confidence            55556666665  3667777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.3e-19  Score=160.75  Aligned_cols=151  Identities=21%  Similarity=0.204  Sum_probs=75.2

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      +.++.+++.++ .+|..+.  ++|++|++++|++++..|..|..+++|++|++++|++....+..|..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44555555554 3333222  45555555555555555555555555555555555554333344455555555555555


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      ++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            554444444455555555555555555 44444444455555555555444333334444444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.1e-19  Score=187.69  Aligned_cols=171  Identities=25%  Similarity=0.314  Sum_probs=98.7

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      .+++|++|++++|.+.. ++ .+..+++|++|+|++|++.+..+  +..+++|++|+|++|.+.+ ++ .+..+++|++|
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            45566666666666653 23 35666666666666666665433  5566666666666666653 22 45566666666


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      +|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            6666666432  3355566666666666666533  355566666666666666654433  556666666666666665


Q ss_pred             CcCCcCCCCCCCCCEEEccCCcccc
Q 038739          168 GDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       168 ~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      +.  ..+..+++|+.|++++|.+.+
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcC
Confidence            42  235556666666666665553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=5.7e-19  Score=159.45  Aligned_cols=152  Identities=22%  Similarity=0.221  Sum_probs=110.2

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN  116 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  116 (477)
                      +.++++++.++. +|..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            577788877774 444333  57888888888887666667777888888888888887766777888888888888888


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccc
Q 038739          117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      .++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            887555555677777777777777777666677777777777777777777666556666666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=2.8e-19  Score=174.20  Aligned_cols=176  Identities=23%  Similarity=0.132  Sum_probs=128.4

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      +.++++++.++ .+|..+.  +.+++|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57778887777 4554443  4577888888888776666676 788888888888888766667778888888888888


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccc---cCCCCCcEEECCCCcCCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI---GNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~  168 (477)
                      |+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+   ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88776666677788888888888888877667777788888888888888765444444   457788888888888876


Q ss_pred             cCCcCCCCCCC--CCEEEccCCccc
Q 038739          169 DLLGPIGNLRS--LEAINVAKCNFS  191 (477)
Q Consensus       169 ~~~~~l~~l~~--L~~L~l~~n~l~  191 (477)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            55555666665  367888887775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=6.2e-19  Score=159.20  Aligned_cols=153  Identities=22%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC-cccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      +++++++|.++. +|..+.  +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            467777777764 444332  345677777777765533 3466677777777777777665555666777777777777


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      |++++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            77765555556666666666666666666656666666666666666666665555556666666666666665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=2.3e-19  Score=159.20  Aligned_cols=154  Identities=14%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             cCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739           31 GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK  110 (477)
Q Consensus        31 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  110 (477)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44555666666666665 233 4555666666666666443  2234555666666666666665555555666666666


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcc
Q 038739          111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF  190 (477)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  190 (477)
                      |++++|++++..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++. + .+..+++|++|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            6666666665555556666666666666665223333 456666666666666666542 2 456666677777766665


Q ss_pred             c
Q 038739          191 S  191 (477)
Q Consensus       191 ~  191 (477)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=3.3e-19  Score=184.18  Aligned_cols=190  Identities=22%  Similarity=0.274  Sum_probs=146.8

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      +..+.++.+.+.+..+  +..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+  +..+++|++|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4445566666664333  56778888899998888754 3 57888899999999998875444  78888899999999


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL  171 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  171 (477)
                      |.+.+ + ..+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++..+
T Consensus        97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            88865 3 368888889999998888884 3 3577888888888888888664  567888888888888888886555


Q ss_pred             cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739          172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                        +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence              77888888888888888753  3577888888888888887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3e-18  Score=155.76  Aligned_cols=153  Identities=22%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      -+.++.++++++. +|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4567777777763 443332  6777888888877776677777777788888888777655555667777777777777


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                      |++++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            7777655556677777777777777775 556666777777777777777766555556666666666666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=4.1e-19  Score=157.57  Aligned_cols=153  Identities=16%  Similarity=0.251  Sum_probs=105.2

Q ss_pred             CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCE
Q 038739           55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKL  134 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  134 (477)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            55667777777777776 444 56677777777777776532  245677777777777777777666667777777777


Q ss_pred             EEccCCCCcccCCccccCCCCCcEEECCCCc-CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739          135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN-FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS  213 (477)
Q Consensus       135 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  213 (477)
                      |++++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            7777777766666677777777777777776 543 33 566777777777777777642 2 56677777777777776


Q ss_pred             Cc
Q 038739          214 YR  215 (477)
Q Consensus       214 l~  215 (477)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=5.7e-19  Score=164.01  Aligned_cols=168  Identities=21%  Similarity=0.301  Sum_probs=92.3

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +.+++.++++++.+++ ++ .+..+++|++|++++|+++.. + .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            3445555666666653 22 455666666666666666532 3 45666666666666666653322  56666666666


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +++|++++ ++. +.. ++|++|++++|++++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++
T Consensus        92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            66666643 222 222 566666666666653 22 355555666666666655433 2 35555555555555555554


Q ss_pred             cCCcCCCCCCCCCEEEccCCccc
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      .  ..+..+++|+.|++++|.++
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEE
T ss_pred             h--HHhccCCCCCEEeCCCCccc
Confidence            3  34445555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.1e-18  Score=161.98  Aligned_cols=170  Identities=20%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             CCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739           32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL  111 (477)
Q Consensus        32 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  111 (477)
                      .+.+++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3456677788888887543  5778888888888888887 444 67788888888888888865543  7888888888


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccc
Q 038739          112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       112 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      ++++|++++ +|.. .. ++|++|++++|.+++.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.++
T Consensus        91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            888888874 4432 22 7777888877777553  3466777777777777777653 2 4566666777777776666


Q ss_pred             cccchhhhcCCCCCEEeCcCCcCcc
Q 038739          192 GQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       192 ~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      +.  ..+..+++|+.|++++|.+.+
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccC
Confidence            44  445566666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1.2e-20  Score=193.72  Aligned_cols=198  Identities=15%  Similarity=0.151  Sum_probs=115.1

Q ss_pred             cCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-------------CcccCCcccCCCCCCCEEe-CcCCCCCC
Q 038739           31 GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-------------FFGELPISMGNLGSLKVLD-LSQNGYFG   96 (477)
Q Consensus        31 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~~   96 (477)
                      ..+++|+.|+|++|+++ .+|..++++++|++|++++|.             ..+..|..++.+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            34455555555555554 344455555555555554432             2334444455555555555 33332210


Q ss_pred             cccc------cccC--CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           97 ELPT------SIRN--LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        97 ~~~~------~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                       ++.      .+..  ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence             000      0000  1246777777777764 554 667777777777777775 566677777777777777777775


Q ss_pred             cCCcCCCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEeCcCCcCccccchh-hhhcCCCCCCEEeC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALDLAQNSYRGMIELD-VLLTSWKNLEFLGL  235 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~l  235 (477)
                       +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+.++.. .....+++|+.|++
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             34 6677777777777777777655 677777777777777777777655422 12344677777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=3e-18  Score=164.69  Aligned_cols=220  Identities=11%  Similarity=0.075  Sum_probs=119.1

Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCC----CcccCCccccCCCCC
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG----FWGKVPHSIGNFTQL  156 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~l~~l~~L  156 (477)
                      +++|+.|++.+ .++...+.+|.+|++|+++++++|.+....+..|..+.++..+....+.    .......+|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66666666665 5544444556666666666666665554455555555544444443311    111122234444444


Q ss_pred             c-EEECCCCcC-CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEe
Q 038739          157 Q-YLHLGSNNF-SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLG  234 (477)
Q Consensus       157 ~-~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  234 (477)
                      + .+.+..... .......-....+++.+.+.++-...........+++|+.+++++|.+..+....  |..+++|+.++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~  256 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT--FAQKKYLLKIK  256 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT--TTTCTTCCEEE
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh--hhCCCCCCEEE
Confidence            4 333322110 0000000012334445554443221111111223777888888877777665554  77777888888


Q ss_pred             CCCCCCccccccCCccCcCccc-EEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEE
Q 038739          235 LSLNRLSVLTKATSDTTSQKLK-YIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFN  308 (477)
Q Consensus       235 ls~n~i~~~~~~~~~~~~~~L~-~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~  308 (477)
                      +.+| +..++...+. .+.+|+ .+++.+ .++.++ .+|.+|++|+.+++++|+++...+..|.  .+++|+.++
T Consensus       257 l~~n-i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly  327 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIY  327 (329)
T ss_dssp             CCTT-CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEE
T ss_pred             CCcc-cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhc
Confidence            8776 5555554433 456677 777777 666664 6677788888888877777766666666  677777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4e-17  Score=144.00  Aligned_cols=129  Identities=26%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccc-cCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPI-SIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      ++++++++.++ .+|..+..  +|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56777777765 45544432  667777777776655443 366666677777777766666666666666666666666


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG  144 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  144 (477)
                      |++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            66666555556666666666666666666556666666666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.2e-20  Score=189.77  Aligned_cols=196  Identities=17%  Similarity=0.174  Sum_probs=106.4

Q ss_pred             CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-------------CCCcccccccCCCCccEEE-ccCCcCcC
Q 038739           55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-------------YFGELPTSIRNLFSLEKLD-LSFNNFSG  120 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~  120 (477)
                      ..+++|+.|+|++|+++ .+|..++++++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            44566666666666665 556666666666666665443             3344455555555555555 34332210


Q ss_pred             CCCc------ccc--CCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739          121 EFPW------STG--NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG  192 (477)
Q Consensus       121 ~~~~------~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  192 (477)
                       ++.      .+.  ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence             000      000  01236666666666644 344 666666666666666666 455566666666666666666664


Q ss_pred             ccchhhhcCCCCCEEeCcCCcCcccc-chhhhhcCCCCCCEEeCCCCCCccccccCCcc--CcCcccEEE
Q 038739          193 QITSSLRNLSQLTALDLAQNSYRGMI-ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT--TSQKLKYIG  259 (477)
Q Consensus       193 ~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~  259 (477)
                       +| .+..+++|+.|++++|.+++.. +..  +..+++|+.|++++|.++..+......  .+++|+.|+
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             34 5666666666666666666554 333  556666666666666554443322211  345565554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=2.1e-17  Score=142.48  Aligned_cols=131  Identities=26%  Similarity=0.209  Sum_probs=63.5

Q ss_pred             CCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739           10 SKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus        10 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 34444445555555555555555443  3445555555555555555543444444455555555


Q ss_pred             CcCCCCCCcc-cccccCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEccCCCC
Q 038739           89 LSQNGYFGEL-PTSIRNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus        89 Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~~  142 (477)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555553321 1344445555555555555543222   2344444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.5e-17  Score=159.84  Aligned_cols=242  Identities=14%  Similarity=0.075  Sum_probs=144.3

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCC--------CCCCCEEecccCcCcccCCcccCC
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGN--------LSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +++|++|||++|.+... ...-..++.++.+.+..|.+   .+.+|.+        +++|++|++.+ .++...+.+|.+
T Consensus        48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEe-cCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence            78899999999998711 10111122234444444422   2244555        66777777766 555555556666


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcC----cCCCCccccCCCCC------------------------
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF----SGEFPWSTGNFSSL------------------------  132 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L------------------------  132 (477)
                      +++|+.+++++|.+....+.+|..+.++.++....+..    .......|.++..|                        
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR  202 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence            77777777776666555555666666666665544221    11112223233333                        


Q ss_pred             --CEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCC-EEeC
Q 038739          133 --KLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT-ALDL  209 (477)
Q Consensus       133 --~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L  209 (477)
                        +.+.+.++-...........+++|+.+++++|.++......|.+|++|+.+++.+| ++.....+|.++++|+ .+++
T Consensus       203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred             ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence              33333332111111011123678888888888887777777888888888888877 6656667788888888 8888


Q ss_pred             cCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEc
Q 038739          210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGL  260 (477)
Q Consensus       210 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L  260 (477)
                      .+ .+..+.+..  |..|++|+.+++++|.++.++...+. .+++|+.++.
T Consensus       282 ~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~-~~~~L~~ly~  328 (329)
T 3sb4_A          282 PA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFG-NGVPSKLIYK  328 (329)
T ss_dssp             CT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTC-TTCCCCEEEC
T ss_pred             cc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhc-CCcchhhhcc
Confidence            77 565555444  78888888888888877777665544 3567777653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=1.6e-18  Score=183.40  Aligned_cols=191  Identities=20%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCE-----EEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEE-----LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      +.++.|+|.+|.+.. .+..+.....|..     ++++.|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            456777887777764 3333322222222     222333333 44566777788888888888776 566666677888


Q ss_pred             CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739           85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN  164 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  164 (477)
                      ++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            88888888776 67777777888888888888877 66777777888888888888774 56767777888888888888


Q ss_pred             cCCCcCCcCCCCCCC-CCEEEccCCccccccchhhhcCCCCCEEeCcCC
Q 038739          165 NFSGDLLGPIGNLRS-LEAINVAKCNFSGQITSSLRNLSQLTALDLAQN  212 (477)
Q Consensus       165 ~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  212 (477)
                      .+++.+|..+..+.. ...+++++|.+++.+|.      .|+.|+++.|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            877766655543221 12356777777665554      3445555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=2.6e-18  Score=181.89  Aligned_cols=194  Identities=23%  Similarity=0.226  Sum_probs=123.0

Q ss_pred             CCEEEccCCCCCC---------CccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739           12 LLHLDLSLNELQG---------ELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG   82 (477)
Q Consensus        12 L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   82 (477)
                      |+.++|+.+.|.+         ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.++
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  270 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS  270 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred             hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence            4455555554443         45778999999999999999998 56666779999999999999998 8899999999


Q ss_pred             CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCC-CcEEEC
Q 038739           83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ-LQYLHL  161 (477)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l  161 (477)
                      +|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+.. +..+++
T Consensus       271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l  348 (727)
T 4b8c_D          271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL  348 (727)
T ss_dssp             TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence            9999999999997 77999999999999999999998 78888999999999999999999888877754422 234788


Q ss_pred             CCCcCCCcCCcCCCCCCCCCEEEccCC--------ccccccchhhhcCCCCCEEeCcCCcCc
Q 038739          162 GSNNFSGDLLGPIGNLRSLEAINVAKC--------NFSGQITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                      ++|.+++.+|.      .|+.|+++.|        .+.+..+..+..+..+....+++|.+.
T Consensus       349 ~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          349 RDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             ccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            99999887665      4556666666        233333334445555566666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=1.7e-17  Score=140.01  Aligned_cols=126  Identities=26%  Similarity=0.212  Sum_probs=62.7

Q ss_pred             CCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739           10 SKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus        10 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554 44454555555555555555555543  3455555555555555555543444444455555555


Q ss_pred             CcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEc
Q 038739           89 LSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDL  137 (477)
Q Consensus        89 Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L  137 (477)
                      +++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555432 22444455555555555555543322   23444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.8e-16  Score=139.80  Aligned_cols=128  Identities=25%  Similarity=0.233  Sum_probs=76.3

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCc-ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      +++++++|+++ .+|..+.  .+|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56667666665 3443332  2666666666666544433 356666666666666666655566666666666666666


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      |++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            6666555555556666666666666665555555555555555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=5.5e-17  Score=139.90  Aligned_cols=133  Identities=24%  Similarity=0.196  Sum_probs=89.6

Q ss_pred             CCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739           33 LHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL  111 (477)
Q Consensus        33 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  111 (477)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            367777777777776 55666667777777777777777644  566777777777777777766566666667777777


Q ss_pred             EccCCcCcCCC-CccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECCCCcCC
Q 038739          112 DLSFNNFSGEF-PWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       112 ~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~  167 (477)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            77777776421 1456666677777777776654433   35666666666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=2e-15  Score=148.32  Aligned_cols=265  Identities=11%  Similarity=0.057  Sum_probs=199.8

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            46677777765 3555566678775 7999998776 776767788885 699999976 56656677889999999999


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +++|+++.....+|. +.+|+.+.+..+ ++......|.++++|+.+++..+ +......+|.+ .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            998888655555666 689999999854 66566778889999999999864 55555567777 789999994 45666


Q ss_pred             cCCcCCCCCCCCCEEEccCCccc-----cccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFS-----GQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL  243 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~  243 (477)
                      ....+|..|++|+.+++.++.+.     ......|.+|++|+.+++.+ .+..+....  |.+|++|+.+++..+ ++.+
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL--LGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT--TTTCCSCCEEEECTT-CCEE
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh--hcCCCCccEEEECcc-ccEE
Confidence            66778899999999999887664     35567888999999999984 466555444  888999999999655 5666


Q ss_pred             cccCCccCcCcccEEEccCCCCCCcc-hhhhcCC-CcCEEeccCCccc
Q 038739          244 TKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQH-HLRFMDLSDNRIQ  289 (477)
Q Consensus       244 ~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~-~L~~L~Ls~n~i~  289 (477)
                      +...+. .+ +|+.+++.+|.+..++ ..+..++ +++.|.+..+.+.
T Consensus       338 ~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          338 NFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            555544 35 8999999999887664 4566664 7888988877654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=4.8e-17  Score=137.30  Aligned_cols=128  Identities=23%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             CCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739           33 LHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL  111 (477)
Q Consensus        33 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  111 (477)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777777777776 56666667777777777777777644  566777777777777777766566666667777777


Q ss_pred             EccCCcCcCC-CCccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECC
Q 038739          112 DLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLG  162 (477)
Q Consensus       112 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~  162 (477)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777642 23556666667777777666655443   355666666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=5.7e-15  Score=145.12  Aligned_cols=268  Identities=9%  Similarity=0.078  Sum_probs=212.3

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      +..+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+++.. .+......+|.+|++|+
T Consensus       109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            344578999999764 676777889886 7999999876 665667788885 799999986 67666668899999999


Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739          110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN  189 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  189 (477)
                      .+++++|.++......|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            999999999855555565 689999999854 66667788999999999999875 55566667777 789999995 45


Q ss_pred             cccccchhhhcCCCCCEEeCcCCcCc-----cccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCC
Q 038739          190 FSGQITSSLRNLSQLTALDLAQNSYR-----GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN  264 (477)
Q Consensus       190 l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  264 (477)
                      ++.....+|.+|++|+.+++.++.+.     .....  .|..|++|+.+++.. .+..++...+. .+.+|+.+.+.++ 
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~~I~~~aF~-~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIRILGQGLLG-GNRKVTQLTIPAN-  333 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCCEECTTTTT-TCCSCCEEEECTT-
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceEEEhhhhhc-CCCCccEEEECcc-
Confidence            66566789999999999999988765     23333  489999999999994 46766665543 5779999999654 


Q ss_pred             CCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCC-CCCeEEecCCccc
Q 038739          265 LTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ-NLNGFNFSHNLLT  315 (477)
Q Consensus       265 l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~-~L~~L~Ls~N~l~  315 (477)
                      ++.++ .+|.+| +|+.+++++|.+.......|.  .++ .++.|.+..+.+.
T Consensus       334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~--~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY--GFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC--CSCTTCCEEEECGGGHH
T ss_pred             ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc--CCCCCccEEEeCHHHHH
Confidence            77774 678889 999999999988866666665  564 7899999887765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=6.3e-16  Score=136.33  Aligned_cols=126  Identities=27%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      ++++++++.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45555655555 3343332  35555555555555 33445555555555555555555444455555555555555555


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCC
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~  142 (477)
                      ++++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55544444555555555555555555533333444444555555544444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=9e-16  Score=133.44  Aligned_cols=130  Identities=22%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      .+.++++++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456777777666 334332  25677777777777665555566667777777777766655555566666667777766


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG  144 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  144 (477)
                      |++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66665555556666666666666666664444444556666666666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=133.79  Aligned_cols=126  Identities=26%  Similarity=0.303  Sum_probs=71.1

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN  116 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  116 (477)
                      +++++++|.++. +|..+.  ++|++|++++|.++ .+|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            456666666653 333322  45666666666665 45555666666666666666665555555666666666666666


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739          117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      ++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            66655555555555555555555555444434455555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=3.7e-15  Score=129.52  Aligned_cols=129  Identities=24%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      .+.+++++++++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3556666666553 23222  24566666666666544444455566666666666665544444455555555555555


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5555444444445555555555555554333333344444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=6.2e-16  Score=134.33  Aligned_cols=131  Identities=21%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             CCCCCCCCEEEccCCCCCCCccccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            6 LGNLSKLLHLDLSLNELQGELPVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      +.++++|++|++++|.++. ++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4456666666666666663 332 33333 666666666666643  456666666666666666664433334566666


Q ss_pred             CEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCcc----ccCCCCCCEEEccCCCC
Q 038739           85 KVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWS----TGNFSSLKLLDLRSCGF  142 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~~  142 (477)
                      ++|++++|++. .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+.|++++|..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            66666666663 3333  5556666666666666665 33332    45555555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=3.5e-14  Score=139.77  Aligned_cols=153  Identities=10%  Similarity=-0.063  Sum_probs=62.6

Q ss_pred             ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739           28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS  107 (477)
Q Consensus        28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  107 (477)
                      .+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +......+|.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            34555555555555432 44344445555555555555433 33233344555555555444332 22222233333332


Q ss_pred             ccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccC
Q 038739          108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK  187 (477)
Q Consensus       108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  187 (477)
                      ++.......  .......|.++++|+.+.+.++. ......+|.++.+|+.+.+..+ ++......+.++..|+.+.+..
T Consensus       142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             SEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence            222221111  11222344444455555544321 1222334444445555544433 2222333444444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=1.6e-15  Score=131.66  Aligned_cols=108  Identities=21%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCC-CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNL-SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSL  108 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  108 (477)
                      +.++++|++|++++|+++.. +. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            45566666666666666633 32 3333 3666666666666543  455556666666666666544333334555555


Q ss_pred             cEEEccCCcCcCCCCc--cccCCCCCCEEEccCCCC
Q 038739          109 EKLDLSFNNFSGEFPW--STGNFSSLKLLDLRSCGF  142 (477)
Q Consensus       109 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~~  142 (477)
                      ++|++++|.++ .+|.  .+..+++|+.|++++|.+
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence            55555555554 3332  344444455555544444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=6.1e-18  Score=150.11  Aligned_cols=134  Identities=21%  Similarity=0.221  Sum_probs=84.0

Q ss_pred             CCCCCCEEEccCCCCCCCccc------cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            8 NLSKLLHLDLSLNELQGELPV------SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      ..+.++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            345566666666666665554      66777777777777777765 44 6666777777777777766 455555556


Q ss_pred             CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccC
Q 038739           82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV  146 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~  146 (477)
                      ++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            677777777776654 33 45666667777777766663211 24555666666666666654443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=4e-13  Score=132.25  Aligned_cols=317  Identities=9%  Similarity=0.020  Sum_probs=141.5

Q ss_pred             CCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcc
Q 038739           46 LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS  125 (477)
Q Consensus        46 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  125 (477)
                      ++.+...+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ +.......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            33344455666666666666432 44344455666666666666543 33333345555666665555433 22233334


Q ss_pred             ccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCC
Q 038739          126 TGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT  205 (477)
Q Consensus       126 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  205 (477)
                      |.++..++......  .......+|.++++|+.+.+..+. .......|..+.+|+.+.+..+ ++......+.++..|+
T Consensus       136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            44443222222221  112223455566666666665432 2233445555666666665544 3323344555555665


Q ss_pred             EEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccC
Q 038739          206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSD  285 (477)
Q Consensus       206 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~  285 (477)
                      .+.+..+...- ..   ......+|+.+.+... +..++...+ ..+..++.+.+..+...--...+..+..++.+....
T Consensus       212 ~i~~~~~~~~i-~~---~~~~~~~l~~i~ip~~-~~~i~~~~f-~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          212 NMEFPNSLYYL-GD---FALSKTGVKNIIIPDS-FTELGKSVF-YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             BCCCCTTCCEE-CT---TTTTTCCCCEEEECTT-CCEECSSTT-TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred             eeecCCCceEe-eh---hhcccCCCceEEECCC-ceecccccc-cccccceeEEcCCCcceeeccccccccccceeccCc
Confidence            55554443211 00   1222345555555432 122222111 134455555555443221223445555555555544


Q ss_pred             CcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeE
Q 038739          286 NRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESL  365 (477)
Q Consensus       286 n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~L  365 (477)
                      +.+.+   ..+.  .+.+|+.+.+..+ ++.+....          .....+|+.+++.++ ++..-...|.++++|+.+
T Consensus       286 ~~i~~---~~F~--~~~~L~~i~l~~~-i~~I~~~a----------F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          286 VIVPE---KTFY--GCSSLTEVKLLDS-VKFIGEEA----------FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             SEECT---TTTT--TCTTCCEEEECTT-CCEECTTT----------TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred             eeecc---cccc--ccccccccccccc-cceechhh----------hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence            43221   1222  4555555555432 22221111          122334555554322 333334455566666666


Q ss_pred             eCCCCcCcccCCchhhhcccccceeecCC
Q 038739          366 VLSHNNLSGLLPQCLGNFSDELLVLDLQG  394 (477)
Q Consensus       366 dLs~N~l~~~~p~~l~~l~~~L~~L~Ls~  394 (477)
                      ++..+ ++..-..+|.... +|+.+++..
T Consensus       349 ~lp~~-l~~I~~~aF~~C~-~L~~i~lp~  375 (394)
T 4fs7_A          349 NFPLS-LRKIGANAFQGCI-NLKKVELPK  375 (394)
T ss_dssp             CCCTT-CCEECTTTBTTCT-TCCEEEEEG
T ss_pred             EECcc-ccEehHHHhhCCC-CCCEEEECC
Confidence            66554 4433344555555 566665543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=7.8e-14  Score=120.20  Aligned_cols=105  Identities=24%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   91 (477)
                      .+++++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            355666666665 3443332  5566666666666655555555666666666666665544444455555555555555


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCc
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFS  119 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  119 (477)
                      |++++..+..|..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555444444555555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.5e-13  Score=118.76  Aligned_cols=104  Identities=21%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45555555554 3343332  45555555555555554555555555555555555555433333445555555555555


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCc
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFS  119 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~  119 (477)
                      ++++..+..|..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            554333333444555555555555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=6.7e-17  Score=143.35  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739           77 SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL  156 (477)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  156 (477)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            33444444444444444432 23 3444444444444444444 333333334444444444444433 22 34444455


Q ss_pred             cEEECCCCcCCCcCC-cCCCCCCCCCEEEccCCccccccch----------hhhcCCCCCEEe
Q 038739          157 QYLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSGQITS----------SLRNLSQLTALD  208 (477)
Q Consensus       157 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~L~  208 (477)
                      ++|++++|.+++... ..+..+++|++|++++|.+++..|.          .+..+++|+.|+
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            555555555543211 2344455555555555555433322          245555666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.5e-13  Score=116.04  Aligned_cols=105  Identities=24%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739           36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF  115 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  115 (477)
                      .+++++++|.++. +|..+  .++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3566666666653 33333  25566666666666655555566666666666666666555444555666666666666


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCCCc
Q 038739          116 NNFSGEFPWSTGNFSSLKLLDLRSCGFW  143 (477)
Q Consensus       116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~  143 (477)
                      |++++..+..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665444444555555555555555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.46  E-value=1.4e-11  Score=121.03  Aligned_cols=294  Identities=11%  Similarity=0.060  Sum_probs=169.6

Q ss_pred             ccCCCCC-CCCEEEccCCCCCCCccccccCCCCCCEEEccccc---CCccccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739            4 SSLGNLS-KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF---LSSEWPISIGNLSSLKELDLSQNRFFGELPISMG   79 (477)
Q Consensus         4 ~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   79 (477)
                      .+|.+++ .|+.+.+-.+ ++.....+|.+|.+|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ ++.....+|.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            3567774 5888888754 665667788889999999888763   66555677888888888887655 4445566788


Q ss_pred             CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEE
Q 038739           80 NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYL  159 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  159 (477)
                      .+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++......|. ...|+.+.+..+- ......+|..+.+++..
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTI  210 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred             hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccccee
Confidence            8888998888754 33444567888888888888765 3423334444 3678888876542 23344566677777766


Q ss_pred             ECCCCcCCCcCCcC-------------CCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcC
Q 038739          160 HLGSNNFSGDLLGP-------------IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS  226 (477)
Q Consensus       160 ~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  226 (477)
                      ....+.........             +.....+..+.+.. .++.....+|.++..|+.+.+..+.. .....  .+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~--aF~~  286 (394)
T 4gt6_A          211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTG--AFMN  286 (394)
T ss_dssp             EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTT--TTTT
T ss_pred             cccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCc--cccc
Confidence            65544322110000             01112233333322 12222334566666666666654432 12222  2556


Q ss_pred             CCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCC
Q 038739          227 WKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLN  305 (477)
Q Consensus       227 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~  305 (477)
                      +++|+.+.+.. .+..++...+. .+.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+ ++......|.  .|.+|+
T Consensus       287 c~~L~~i~l~~-~i~~I~~~aF~-~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~  360 (394)
T 4gt6_A          287 CPALQDIEFSS-RITELPESVFA-GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS--NCTALN  360 (394)
T ss_dssp             CTTCCEEECCT-TCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT--TCTTCC
T ss_pred             ccccccccCCC-cccccCceeec-CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh--CCCCCC
Confidence            66666666643 23334333322 3556666666543 44443 45666666666666543 4423333444  566666


Q ss_pred             eEEecCCc
Q 038739          306 GFNFSHNL  313 (477)
Q Consensus       306 ~L~Ls~N~  313 (477)
                      .+++.++.
T Consensus       361 ~i~~~~~~  368 (394)
T 4gt6_A          361 NIEYSGSR  368 (394)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCce
Confidence            66666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=6.8e-13  Score=114.64  Aligned_cols=103  Identities=20%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN  116 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  116 (477)
                      +.+++++|+++ .+|..+.  ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666654 3333332  55566666666655555555555555555555555555444444455555555555555


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCCC
Q 038739          117 NFSGEFPWSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus       117 ~l~~~~~~~~~~l~~L~~L~L~~n~~  142 (477)
                      ++++..+..+..+++|++|++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            55533333344555555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=5.1e-11  Score=117.14  Aligned_cols=317  Identities=11%  Similarity=0.069  Sum_probs=178.1

Q ss_pred             cccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCc---CcccCCcccCCCCCCCEEeCcCCCCCCcccccc
Q 038739           27 PVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR---FFGELPISMGNLGSLKVLDLSQNGYFGELPTSI  102 (477)
Q Consensus        27 ~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  102 (477)
                      ..+|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|.   ++..-..+|.++.+|+.+.+..+ ++.....+|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            44577774 5888888764 666677788888899988887763   55445567888888888877654 444445677


Q ss_pred             cCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCE
Q 038739          103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA  182 (477)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  182 (477)
                      ..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +......+|.. ..|+.+.+..+-. ......+..+..++.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~  209 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALST  209 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccce
Confidence            88888888888654 33355567778888888888654 33333445543 5688888765432 244556777777777


Q ss_pred             EEccCCccccccchhh-------------hcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          183 INVAKCNFSGQITSSL-------------RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       183 L~l~~n~l~~~~~~~l-------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                      ...............+             .....+..+.+... +......  .|..+..|+.+.+..+. ..++...+ 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~--aF~~c~~L~~i~lp~~~-~~I~~~aF-  284 (394)
T 4gt6_A          210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETH--AFDSCAYLASVKMPDSV-VSIGTGAF-  284 (394)
T ss_dssp             EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTT--TTTTCSSCCEEECCTTC-CEECTTTT-
T ss_pred             ecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccc--eeeecccccEEeccccc-ceecCccc-
Confidence            7665543321110001             11122333333221 1111111  26666777777775542 22222222 


Q ss_pred             cCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          250 TTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                      ..+..|+.+.+. +.++.++ .+|.+|.+|+.+++..+ ++......|.  .|.+|+.+.+..+                
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~--~C~~L~~i~ip~s----------------  344 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA--GCEQLERIAIPSS----------------  344 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEECTT----------------
T ss_pred             ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh--CCCCCCEEEECcc----------------
Confidence            145566666664 3445554 45666666777666543 3333333444  5666666666432                


Q ss_pred             CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL  397 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l  397 (477)
                                         ++..-...|.++++|+.+++.++....   ..+.... .|+.+.+..|.+
T Consensus       345 -------------------v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~-~L~~i~i~~~~~  390 (394)
T 4gt6_A          345 -------------------VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS-GLQNLPVAPGSI  390 (394)
T ss_dssp             -------------------CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC-CC----------
T ss_pred             -------------------cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC-CCCEEEeCCCCE
Confidence                               222224567788888888888775431   2344444 677776665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=1.8e-14  Score=140.16  Aligned_cols=167  Identities=19%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             CCCCEEEcccccCCccccccC----C-CCCCCCEEecccCcCcccCCccc-CCCCCCCEEeCcCCCCCCcccccc-----
Q 038739           34 HSLEELDLSANFLSSEWPISI----G-NLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI-----  102 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l-----  102 (477)
                      ++|++|++++|.++......+    . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            466777777777664333222    2 22567777777777653322222 234567777777777754333332     


Q ss_pred             cCCCCccEEEccCCcCcCC----CCccccCCCCCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCCCc----C
Q 038739          103 RNLFSLEKLDLSFNNFSGE----FPWSTGNFSSLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFSGD----L  170 (477)
Q Consensus       103 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~  170 (477)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+...    ++..+...++|++|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2456777777777777532    333345667777888877777543    234556667788888888887653    2


Q ss_pred             CcCCCCCCCCCEEEccCCccccccchhhhc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQITSSLRN  200 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  200 (477)
                      ...+...++|++|++++|.+++.....+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            233445677888888888887655555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=4.5e-14  Score=137.34  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             CCCCEEecccCcCcccCCccc----C-CCCCCCEEeCcCCCCCCcccccc-cCCCCccEEEccCCcCcCCCCccc-----
Q 038739           58 SSLKELDLSQNRFFGELPISM----G-NLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWST-----  126 (477)
Q Consensus        58 ~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~-----  126 (477)
                      ++|++|++++|.++......+    . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            455666666665543222221    1 12456666666665533222111 123355555555555542222121     


Q ss_pred             cCCCCCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCC
Q 038739          127 GNFSSLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       127 ~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      ...++|++|+|++|.++..    ++..+..+++|++|++++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            1234455555555554321    1222234444555555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=8.3e-12  Score=120.57  Aligned_cols=104  Identities=21%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             CEEEccCC-CCCCCccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           13 LHLDLSLN-ELQGELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        13 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34577776 676 4565 77777777777775 77776666677777777777777777777777777777777777777


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCc
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFS  119 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  119 (477)
                      +|++++..+..|..++ |++|++++|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777655555555444 777777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=2.1e-11  Score=117.75  Aligned_cols=94  Identities=22%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             CCCccCCCCCCCCEEEccC-CCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739            1 RIPSSLGNLSKLLHLDLSL-NELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMG   79 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   79 (477)
                      +||. |..+++|++|+|++ |.|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            4788 99999999999996 999988888999999999999999999999999999999999999999999976666666


Q ss_pred             CCCCCCEEeCcCCCCCC
Q 038739           80 NLGSLKVLDLSQNGYFG   96 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~   96 (477)
                      .++ |++|++.+|.+..
T Consensus       102 ~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCC-CCEEECCSSCCCC
T ss_pred             cCC-ceEEEeeCCCccC
Confidence            665 9999999999864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.17  E-value=6.2e-09  Score=101.57  Aligned_cols=286  Identities=7%  Similarity=0.021  Sum_probs=126.2

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL   87 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   87 (477)
                      ...+|+.+.+.. .++.....+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.....+|... +|+.+
T Consensus        44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred             cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence            334455555542 233333444555555555555432 443444445554 3555544332 222223333332 45555


Q ss_pred             eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc------------cCCccccCCCC
Q 038739           88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG------------KVPHSIGNFTQ  155 (477)
Q Consensus        88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------~~~~~l~~l~~  155 (477)
                      ++..+ ++.....+|.++ +|+.+.+..+ ++......+..+..++...+..+....            .....+.....
T Consensus       119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
T 4h09_A          119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT  195 (379)
T ss_dssp             ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred             cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence            55443 212222233332 3444443322 222333344455555555544322110            01112223333


Q ss_pred             CcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739          156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL  235 (477)
Q Consensus       156 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l  235 (477)
                      +..+.+.... .......+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++......  +..+.+|+.+.+
T Consensus       196 ~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a--F~~~~~l~~i~l  270 (379)
T 4h09_A          196 GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL--LQNCTALKTLNF  270 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT--TTTCTTCCEEEE
T ss_pred             ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc--cceeehhccccc
Confidence            4444333221 1122334445555666655433 22233445556666666666543 33222222  555666666666


Q ss_pred             CCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecC
Q 038739          236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSH  311 (477)
Q Consensus       236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~  311 (477)
                      ..+ +..++...+ ..+.+|+.+.+.++.++.++ .+|.+|.+|+.++|..+ ++......|.  .|.+|+.+.+..
T Consensus       271 ~~~-i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~  342 (379)
T 4h09_A          271 YAK-VKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK  342 (379)
T ss_dssp             CCC-CSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred             ccc-ceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence            543 233322222 13556666666666665554 45566666666666543 3323333444  556666655543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=1.3e-08  Score=99.21  Aligned_cols=278  Identities=13%  Similarity=0.041  Sum_probs=190.4

Q ss_pred             ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739            4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS   83 (477)
Q Consensus         4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   83 (477)
                      .+|.+|++|+.+++..+ ++.....+|.++ +|+.+.+..+ ++.+...+|... +|+.+.+..+- +.....+|.++ +
T Consensus        63 ~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~  136 (379)
T 4h09_A           63 ANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-S  136 (379)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-C
T ss_pred             HHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-e
Confidence            46899999999999754 665666788887 6888888654 555555667665 79999997653 32444556554 6


Q ss_pred             CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC------------CCCccccCCCCCCEEEccCCCCcccCCcccc
Q 038739           84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG------------EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG  151 (477)
Q Consensus        84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~  151 (477)
                      |+.+.+..+ ++......|..+.+++.+.+..+....            .....+.....+..+.+.... .......+.
T Consensus       137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~  214 (379)
T 4h09_A          137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFS  214 (379)
T ss_dssp             CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTT
T ss_pred             eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccc
Confidence            777666543 444445677888888888876543321            122234455666666665432 233445677


Q ss_pred             CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCC
Q 038739          152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLE  231 (477)
Q Consensus       152 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  231 (477)
                      .+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +......  .|..+.+|+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~--aF~~c~~L~  289 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL--LCSGCSNLT  289 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT--TTTTCTTCC
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc--ccccccccc
Confidence            7888888888754 44455567788899999998765 55455677888999999988654 4433333  388899999


Q ss_pred             EEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCC
Q 038739          232 FLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLL  297 (477)
Q Consensus       232 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~  297 (477)
                      .+.+.++.++.++...+. .+.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+ ++......|.
T Consensus       290 ~i~l~~~~i~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFM-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             EEEECCTTCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             cccccccccceehhhhhc-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            999988877777766554 4678999999754 67775 57889999999988755 5433344443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.07  E-value=8e-11  Score=113.53  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             CCCCEEEccCCCCCC-Cc-------cccccCCCCCCEEEcccccCC---------ccccccCCCCCCCCEEecccCcCcc
Q 038739           10 SKLLHLDLSLNELQG-EL-------PVSVGNLHSLEELDLSANFLS---------SEWPISIGNLSSLKELDLSQNRFFG   72 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~-~~-------~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~   72 (477)
                      +.++.|.+......+ ..       ..+...+++|+.|.+......         +.+...+..+|+|+.|++++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            345666666544331 11       223445667777777554221         112233455666666666665211 


Q ss_pred             cCCcccCCCCCCCEEeCcCCCCCCccccccc--CCCCccEEEcc
Q 038739           73 ELPISMGNLGSLKVLDLSQNGYFGELPTSIR--NLFSLEKLDLS  114 (477)
Q Consensus        73 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls  114 (477)
                      .++. +. +++|++|++..|.+.......+.  .+++|++|+|+
T Consensus       186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            1222 22 56666666666655432222222  45666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=5.5e-11  Score=114.67  Aligned_cols=187  Identities=16%  Similarity=0.186  Sum_probs=111.3

Q ss_pred             cCCCCCCCCEEEccCCCCC---------CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC
Q 038739            5 SLGNLSKLLHLDLSLNELQ---------GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP   75 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   75 (477)
                      ++.++++|+.|.+.+....         +.+...+..+|+|+.|+|++|.-. .++. +. +++|++|++..+.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence            4556789999999765331         124455678899999999988322 2232 43 7899999999988764433


Q ss_pred             cccC--CCCCCCEEeCcCC--CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccc-
Q 038739           76 ISMG--NLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-  150 (477)
Q Consensus        76 ~~~~--~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-  150 (477)
                      ..+.  .+++|++|+|+.+  ...+..  .+..+   .          ..+.  ...+++|++|++.+|.+....+..+ 
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l---~----------~~l~--~~~~p~Lr~L~L~~~~i~~~~~~~la  273 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF---R----------PLFS--KDRFPNLKWLGIVDAEEQNVVVEMFL  273 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT---G----------GGSC--TTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred             HHHHHccCCCCcEEEEeccccccccch--hHHHH---H----------HHHh--cCCCCCcCEEeCCCCCCchHHHHHHH
Confidence            3343  7899999998642  211110  01000   0          0000  0134566666666665543222222 


Q ss_pred             --cCCCCCcEEECCCCcCCCc----CCcCCCCCCCCCEEEccCCccccccchhhhc-CCCCCEEeCcCCc
Q 038739          151 --GNFTQLQYLHLGSNNFSGD----LLGPIGNLRSLEAINVAKCNFSGQITSSLRN-LSQLTALDLAQNS  213 (477)
Q Consensus       151 --~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~  213 (477)
                        ..+++|++|+|+.|.+++.    ++..+..+++|+.|+++.|.++......+.. +  ...++++.++
T Consensus       274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence              2456777777777777653    2233345678888888888777554444543 2  4567887776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.6e-09  Score=94.23  Aligned_cols=116  Identities=16%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             ccccCCCCCCEEEcccc-cCCcc----ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc-
Q 038739           28 VSVGNLHSLEELDLSAN-FLSSE----WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE-   97 (477)
Q Consensus        28 ~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-   97 (477)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566777888888877 77642    234456667788888888877532    233444557788888888877543 


Q ss_pred             ---ccccccCCCCccEEEc--cCCcCcCC----CCccccCCCCCCEEEccCCCCc
Q 038739           98 ---LPTSIRNLFSLEKLDL--SFNNFSGE----FPWSTGNFSSLKLLDLRSCGFW  143 (477)
Q Consensus        98 ---~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~  143 (477)
                         +...+...++|++|++  ++|.+...    +...+...+.|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3455666777888888  77777643    2334455677888888888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.52  E-value=7.2e-08  Score=83.76  Aligned_cols=19  Identities=11%  Similarity=0.051  Sum_probs=9.5

Q ss_pred             hhhcCCCcCEEeccCCccc
Q 038739          271 FLQNQHHLRFMDLSDNRIQ  289 (477)
Q Consensus       271 ~l~~~~~L~~L~Ls~n~i~  289 (477)
                      .+...++|++|+|++|.+.
T Consensus       146 ~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          146 MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEeccCCCCC
Confidence            3444455555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=1e-08  Score=93.73  Aligned_cols=82  Identities=32%  Similarity=0.380  Sum_probs=52.6

Q ss_pred             CCCCCCCEEecccCcCcc--cCCcccCCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCc-------
Q 038739           55 GNLSSLKELDLSQNRFFG--ELPISMGNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPW-------  124 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------  124 (477)
                      .++++|++|+|++|++++  .++..+..+++|++|+|++|++.+. ..+.+..+ +|++|+|++|.+.+.+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            456777777777777765  3345556677777777777777654 11223333 778888888877765552       


Q ss_pred             cccCCCCCCEEEc
Q 038739          125 STGNFSSLKLLDL  137 (477)
Q Consensus       125 ~~~~l~~L~~L~L  137 (477)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3556777777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=1.6e-07  Score=85.93  Aligned_cols=103  Identities=25%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCCCCE--EEccCCCCC---CCccccccCCCCCCEEEcccccCCcc--ccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            9 LSKLLH--LDLSLNELQ---GELPVSVGNLHSLEELDLSANFLSSE--WPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         9 l~~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      .+.|+.  ++++.|...   ..++....++++|++|+|++|++++.  ++..+..+++|+.|+|++|++.+.  ..+..+
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l  217 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI  217 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence            334444  566666432   11222225688999999999999873  345667889999999999998754  233333


Q ss_pred             C--CCCEEeCcCCCCCCccc-------ccccCCCCccEEEc
Q 038739           82 G--SLKVLDLSQNGYFGELP-------TSIRNLFSLEKLDL  113 (477)
Q Consensus        82 ~--~L~~L~Ls~n~l~~~~~-------~~l~~l~~L~~L~L  113 (477)
                      .  +|++|+|++|.+.+.+|       ..+..+++|+.||=
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            3  89999999999876554       24677888988864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.4e-07  Score=80.12  Aligned_cols=84  Identities=13%  Similarity=0.081  Sum_probs=50.1

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCCC----CCCCEEeCcCCC-CCCcccccccCCCC
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGNL----GSLKVLDLSQNG-YFGELPTSIRNLFS  107 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~  107 (477)
                      .+|++||+++|.++...-..+..+++|++|+|++|. +++.--..++.+    ++|++|++++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            456777777776665544556667777777777764 443322334433    357777777764 54433344566677


Q ss_pred             ccEEEccCCc
Q 038739          108 LEKLDLSFNN  117 (477)
Q Consensus       108 L~~L~Ls~n~  117 (477)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=3.2e-07  Score=77.83  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=55.4

Q ss_pred             CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-CCCcccccccCC----CCccEEEccCCc-CcCCCCccccCCCC
Q 038739           58 SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-YFGELPTSIRNL----FSLEKLDLSFNN-FSGEFPWSTGNFSS  131 (477)
Q Consensus        58 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  131 (477)
                      .+|++||+++|.++..--..+..+++|++|+|++|. +++.--..++.+    ++|++|++++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467888888877765555566777888888888774 543333344443    367888887764 65443345666778


Q ss_pred             CCEEEccCCC
Q 038739          132 LKLLDLRSCG  141 (477)
Q Consensus       132 L~~L~L~~n~  141 (477)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=0.00012  Score=63.18  Aligned_cols=18  Identities=11%  Similarity=0.041  Sum_probs=9.4

Q ss_pred             hhhhcCCCcCEEeccCCc
Q 038739          270 NFLQNQHHLRFMDLSDNR  287 (477)
Q Consensus       270 ~~l~~~~~L~~L~Ls~n~  287 (477)
                      ..+..-++|+.|+++.|.
T Consensus       151 ~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          151 MAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCCcCeEeccCCC
Confidence            344445556666655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.43  E-value=4.2e-05  Score=66.09  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=69.3

Q ss_pred             ccCCCCCCEEEcccc-cCCcc----ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc---
Q 038739           30 VGNLHSLEELDLSAN-FLSSE----WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE---   97 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~---   97 (477)
                      +.+-+.|++|+|++| +|...    +..++..-+.|+.|+|++|.+...    +.+.+..-+.|++|+|+.|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345567788888775 66532    334456667788888888877633    223334556788888888877543   


Q ss_pred             -ccccccCCCCccEEEccCCc---CcC----CCCccccCCCCCCEEEccCCCC
Q 038739           98 -LPTSIRNLFSLEKLDLSFNN---FSG----EFPWSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus        98 -~~~~l~~l~~L~~L~Ls~n~---l~~----~~~~~~~~l~~L~~L~L~~n~~  142 (477)
                       +.+++..-+.|++|+|++|.   +..    .+...+..-+.|+.|+++.+..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             33445556678888887543   221    1223444557788888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.00087  Score=53.90  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=16.8

Q ss_pred             ccceeecCCCcCccCCChhhhccCCCCeEeCCCCcC
Q 038739          337 GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNL  372 (477)
Q Consensus       337 ~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l  372 (477)
                      +++.|++++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344444444444433333444444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.0034  Score=50.39  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             cEEEccCCCCC--CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccc
Q 038739          256 KYIGLRSCNLT--KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT  315 (477)
Q Consensus       256 ~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~  315 (477)
                      ..++.+++.++  .+|..+  .++|++|+|++|+|+...+..|.  .+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence            36777777777  777532  34688888888888855555554  6788888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 58/291 (19%), Positives = 91/291 (31%), Gaps = 14/291 (4%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
            L  +  S   L     +          LDL  N+          NL +L  L L  N  
Sbjct: 11  HLRVVQCSDLGLEK---VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
               P +   L  LE+L LS N               L++ +         V + +    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
            +  L       SG   G    ++ L  I +A  N +   T        LT L L  N  
Sbjct: 128 VV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKI 183

Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN 274
             +      L    NL  LGLS           S   +  L+ + L +  L K P  L +
Sbjct: 184 TKVDAAS--LKGLNNLAKLGLS-FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 275 QHHLRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGFDQHP 321
             +++ + L +N I          P       + +G +   N +  ++  P
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 9/269 (3%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           ++P  L        LDL  N++         NL +L  L L  N +S   P +   L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
           + L LS+N+           L  L+V +         +   +  +  +E L  +    SG
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 121 EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
               +      L  + +             G    L  LHL  N  +      +  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 181 EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240
             + ++  + S     SL N   L  L     +   ++++   L   K ++ + L  N +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELH---LNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFP 269
           S +            K       +L   P
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 9e-13
 Identities = 43/291 (14%), Positives = 83/291 (28%), Gaps = 43/291 (14%)

Query: 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166
               LDL  N  +        N  +L  L L +       P +     +L+ L+L  N  
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
                     L+ L          +    S    L+Q+  ++L  N  +     +     
Sbjct: 92  KELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 227 WKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDN 286
            K L ++ ++   ++ + +                                L  + L  N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP---------------------------SLTELHLDGN 181

Query: 287 RIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNN 346
           +I       L    + NL     S N ++  D                 P       +NN
Sbjct: 182 KITKVDAASL--KGLNNLAKLGLSFNSISAVDNGS----------LANTPHLRELHLNNN 229

Query: 347 SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
            L  ++P  + +   ++ + L +NN+S +                  G +L
Sbjct: 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 4e-14
 Identities = 66/395 (16%), Positives = 132/395 (33%), Gaps = 38/395 (9%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            L++ +   L    +   +  +  +L  +  L      + S     +  L++L +++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
           N+     P+   NL  L  + ++ N      P +               N +G   ++  
Sbjct: 76  NQLTDITPL--KNLTKLVDILMNNNQIADITPLAN------------LTNLTGLTLFNNQ 121

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
                 L +L +        ++I + + L  L        G+ +  +  L +L  +    
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 188 CNFSGQITSSLR-NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246
            + +     S+   L+ L +L    N    +  L        NL+ L L+ N+L  +   
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLG----ILTNLDELSLNGNQLKDI--- 234

Query: 247 TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNG 306
            +  +   L  + L +  ++           L  + L  N+I    P   L         
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 307 FNFSHNLLTGFDQHPVV---LPGNK--GPLPVPPPGTITYL-ASNNSLTGEIPSWICNLN 360
            N   ++    +   +    L  N      PV     +  L  +NN ++    S + NL 
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN 395
            +  L   HN +S L P  L N +  +  L L   
Sbjct: 352 NINWLSAGHNQISDLTP--LANLT-RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 7e-13
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 28/157 (17%)

Query: 3   PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS--------- 53
             +L +L+ L  LDL+ N++    P+S   L  L EL L AN +S+  P++         
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 54  -----------IGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI 102
                      I NL +L  L L  N      P+   +L  L+ L  + N       +S+
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSL 347

Query: 103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS 139
            NL ++  L    N  S   P    N + +  L L  
Sbjct: 348 ANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 5e-11
 Identities = 66/346 (19%), Positives = 123/346 (35%), Gaps = 59/346 (17%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPI----------- 52
             +  L+ L  ++ S N+L    P  + NL  L ++ ++ N ++   P+           
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 53  -------------------------SIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
                                    +I ++S+L  L   Q   FG     +  L +L  L
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 88  DLSQNGY-FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV 146
           +            + +  L +LE L  + N  S   P      ++L  L L         
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-- 233

Query: 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTA 206
             ++ + T L  L L +N  S   L P+  L  L  + +     S      L  L+ LT 
Sbjct: 234 IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNIS--PLAGLTALTN 289

Query: 207 LDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266
           L+L +N    +  +  L    KNL +L L  N +S ++  +S     KL+ +   +  ++
Sbjct: 290 LELNENQLEDISPISNL----KNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKVS 342

Query: 267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
              + L N  ++ ++    N+I    P      N+  +     +  
Sbjct: 343 DVSS-LANLTNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 37/251 (14%), Positives = 73/251 (29%), Gaps = 14/251 (5%)

Query: 149 SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALD 208
           S  +  Q+  L           +  +  L +L  IN +    +    + L+NL++L  + 
Sbjct: 39  SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 94

Query: 209 LAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF 268
           +  N    +  L  L        F     +   +      +        I     +++  
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI----SDISAL 150

Query: 269 PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328
                 Q       ++D +    +          N          LT  +          
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 329 GPLPVPPPGTITYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDEL 387
              P+     +  L+ + N L       + +L  L  L L++N +S L P        +L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKL 265

Query: 388 LVLDLQGNNLP 398
             L L  N + 
Sbjct: 266 TELKLGANQIS 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 49/278 (17%), Positives = 89/278 (32%), Gaps = 28/278 (10%)

Query: 34  HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG 93
            + + + L  N +S     S     +L  L L  N        +   L  L+ LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 94  YFGEL-PTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGN 152
               + P +   L  L  L L         P      ++L+ L L+          +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212
              L +L L  N  S         L SL+ + + +   +     + R+L +L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272
           +   +    +     + L++L L+ N                        C       +L
Sbjct: 212 NLSALPTEAL--APLRALQYLRLNDNPWVC-------------------DCRARPLWAWL 250

Query: 273 QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFS 310
           Q          S + +   +P+ L   +++ L   +  
Sbjct: 251 QK------FRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 8e-11
 Identities = 42/190 (22%), Positives = 63/190 (33%), Gaps = 4/190 (2%)

Query: 27  PVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV 86
           P +   L  L  L L    L    P     L++L+ L L  N        +  +LG+L  
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 87  LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV 146
           L L  N        + R L SL++L L  N  +   P +  +   L  L L +       
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTA 206
             ++     LQYL L  N +  D          L+    +       +   L        
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD---L 273

Query: 207 LDLAQNSYRG 216
             LA N  +G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 9e-09
 Identities = 40/245 (16%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 97  ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKV---------- 146
            +P  I    + +++ L  N  S     S     +L +L L S                 
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 147 ---------------PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS 191
                          P +     +L  LHL          G    L +L+ + +      
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 192 GQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT 251
                + R+L  LT L L  N    + E         +L+ L L  NR++ +        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 252 SQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSH 311
            + +      +         L     L+++ L+DN            P    L  F  S 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR---ARPLWAWLQKFRGSS 257

Query: 312 NLLTG 316
           + +  
Sbjct: 258 SEVPC 262

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 4/158 (2%)

Query: 11  KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRF 70
            L +L L  N LQ     +  +L +L  L L  N +SS    +   L SL  L L QNR 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 71  FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS 130
               P +  +LG L  L L  N        ++  L +L+ L L+ N +  +   +   ++
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWA 248

Query: 131 SLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168
            L+     S      +P  +          L +N+  G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 3/141 (2%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
              +  +L  L HL L  N +      +   LHSL+ L L  N ++   P +  +L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 62  ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            L L  N        ++  L +L+ L L+ N +  +   +      L+K   S +     
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCS 263

Query: 122 FPWSTGN--FSSLKLLDLRSC 140
            P          L   DL+ C
Sbjct: 264 LPQRLAGRDLKRLAANDLQGC 284

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 59/276 (21%), Positives = 92/276 (33%), Gaps = 20/276 (7%)

Query: 125 STGNFSSLKLLDLRSCGFWGK--VPHSIGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLE 181
           +      +  LDL          +P S+ N   L +L++G   N  G +   I  L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 182 AINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241
            + +   N SG I   L  +  L  LD + N+  G +     ++S  NL  +    NR+S
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS--ISSLPNLVGITFDGNRIS 162

Query: 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
                +  + S+    + +    LT          +L F+DLS N ++G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNI 361
                   +                                  NN + G +P  +  L  
Sbjct: 223 TQKIHLAKNSLAFDLGKVGL-------------SKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 362 LESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
           L SL +S NNL G +PQ  GN      V     N  
Sbjct: 270 LHSLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 4e-11
 Identities = 62/298 (20%), Positives = 103/298 (34%), Gaps = 16/298 (5%)

Query: 29  SVGNLHSLEELDLSANFLSSEWP----ISIGNLSSLKELDLSQNRFFGELPI--SMGNLG 82
            +GN  +L     + +  +  W      +      +  LDLS        PI  S+ NL 
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 83  SLKVLDLSQNGYF-GELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG 141
            L  L +       G +P +I  L  L  L ++  N SG  P       +L  LD     
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 142 FWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL 201
             G +P SI +   L  +    N  SG +    G+   L        N            
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR 261
             L  +DL++N   G   +                L + S+         S+ L  + LR
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIH----LAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 262 SCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN-LLTGF 317
           +  +    P  L     L  +++S N + G++P+     N+Q  +   +++N  L G 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 58/259 (22%), Positives = 87/259 (33%), Gaps = 51/259 (19%)

Query: 4   SSLGNLSKLLHLDLSLNELQG--ELPVSVGNLHSLEELDLSAN-FLSSEWPISIGNLSSL 60
            +     ++ +LDLS   L     +P S+ NL  L  L +     L    P +I  L+ L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 61  KELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG 120
             L ++     G +P  +  + +L  LD S N   G LP SI +L +L  +    N  SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 121 EFPWSTGNFSSLKL---------------------------------------------- 134
             P S G+FS L                                                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 135 -LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193
                +          +G    L  L L +N   G L   +  L+ L ++NV+  N  G+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 194 ITSSLRNLSQLTALDLAQN 212
           I     NL +      A N
Sbjct: 284 I-PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 14  HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
            LDL  N + G LP  +  L  L  L++S N L  E P   GNL        + N+    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 74  LPIS 77
            P+ 
Sbjct: 307 SPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 64  DLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP 123
           DL  NR +G LP  +  L  L  L++S N   GE+P    NL   +    + N      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPIS 53
           +P  L  L  L  L++S N L GE+P   GNL   +    + N      P+ 
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 7/211 (3%)

Query: 5   SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELD 64
            +  ++  L ++     L   LP  +        L LS N L +    ++   + L +L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 65  LSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW 124
           L +           G L  L  LDLS N              +L  LD+SFN  +     
Sbjct: 62  LDRAELTK--LQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 125 STGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAIN 184
           +      L+ L L+        P  +    +L+ L L +NN +    G +  L +L+ + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 185 VAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215
           + + +    I         L    L  N + 
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 45/406 (11%), Positives = 89/406 (21%), Gaps = 20/406 (4%)

Query: 12  LLHLDLSLNELQGE-LPVSVGNLHSLEELDLSANFLSSEWPISIG----NLSSLKELDLS 66
           +  LD+   EL        +  L   + + L    L+      I        +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 67  QNRFFGELPISMG-----NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
            N         +          ++ L L      G     + +           +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE 181
              +        LLD +      ++ +   +    + L              + N    E
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 182 AINVAKCNFSGQITSSLRNLSQLTA------LDLAQNSYRGMIELDVLLTSWKNLEFLGL 235
           A     C         L  L   +                    L  L      L  +G+
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW 295
           +     +L  ++   T    +                  +         +          
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 296 LLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEI-PS 354
                       +      +                       I+     ++   E+   
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 355 WICNLNILESLVLSHNNLSGLLPQCLGNF---SDELLVLDLQGNNL 397
                ++L  L L+  ++S      L      +  L  LDL  N L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 59  SLKELDLSQNRFFGE-LPISMGNLGSLKVLDLSQNG----YFGELPTSIRNLFSLEKLDL 113
            ++ LD+             +  L   +V+ L   G       ++ +++R   +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 114 SFNNFSGEFPWSTG-----NFSSLKLLDLRSCGFW 143
             N                    ++ L L++C   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 8   NLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANFLSSEWPISIG-----NLS 58
             S L  L L+  ++       L  ++   HSL ELDLS N L     + +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 59  SLKELDLSQNRFFGELPISMGNLG----SLKVL 87
            L++L L    +  E+   +  L     SL+V+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 107 SLEKLDLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGF----WGKVPHSIGNFTQLQYLHL 161
            ++ LD+     S   +          +++ L  CG        +  ++     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193
            SN      +  +       +  + K +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 48  SEWPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGELPTSI- 102
                     S L+ L L+           L  ++    SL+ LDLS N         + 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 103 ----RNLFSLEKLDLSFNNFSGEFP 123
               +    LE+L L    +S E  
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 229 NLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDL 283
           +++ L +    LS    A      Q+ + + L  C LT        + L+    L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 284 SDNRIQGKVPKWLLD 298
             N +       +L 
Sbjct: 63  RSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 1  RIPSSLGNLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANFLSSEWPISIG- 55
          R    L  L +   + L    L       +  ++    +L EL+L +N L       +  
Sbjct: 18 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77

Query: 56 ----NLSSLKELDLSQNRFF 71
                  +++L L      
Sbjct: 78 GLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 122 FPWSTGNFSSLKLLDLRSCGFWGKVPHSIG----NFTQLQYLHLGSNNFSGDLLGPIG-- 175
                   S L++L L  C        S+         L+ L L +N      +  +   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 176 ---NLRSLEAINVAKCNFSGQITSSLRNLSQ 203
                  LE + +    +S ++   L+ L +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 78  MGNLGSLKVLDLSQNGYFGE----LPTSIRNLFSLEKLDLSFNNFSGEFPWS-----TGN 128
                 L+VL L+           L  ++    SL +LDLS N                 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 129 FSSLKLLDLRSCGFWGKVPHSI 150
              L+ L L    +  ++   +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRL 446

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 42/288 (14%), Positives = 90/288 (31%), Gaps = 44/288 (15%)

Query: 14  HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
            LDL+   L  ++   + +   +       +F+         +   ++ +DLS +     
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVS 61

Query: 74  -LPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL 132
            L   +     L+ L L        +  ++    +L +L+LS  +   EF   T   S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 133 KLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG------------------------ 168
           +L +L     +      +          +   N SG                        
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 169 ---------DLLGPIGNLRSLEAINVAKCNF-SGQITSSLRNLSQLTALDLAQNSYRGMI 218
                    D       L  L+ +++++C     +    L  +  L  L +      G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV-----FGIV 236

Query: 219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266
               L    + L  L ++ +  + + + T    ++K + I    C LT
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTIARPT--IGNKKNQEIWGIKCRLT 282

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 41  LSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPT 100
              N  S+E         SL+EL++S N+   ELP        L+ L  S N +  E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP---ALPPRLERLIASFN-HLAEVPE 321

Query: 101 SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKL 134
             +N   L++L + +N    EFP    +   L++
Sbjct: 322 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 53/315 (16%), Positives = 87/315 (27%), Gaps = 17/315 (5%)

Query: 83  SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
               L+L+  G    LP    +L   E L  S N+ + E P    +  SL + +      
Sbjct: 39  QAHELELNNLG-LSSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
               P           L       +   L  I    +              I +    L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS 262
           +L  L           + + L         L   +   ++L +         L  I   +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 263 CNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV 322
             L   P+   +   L   D     +             +N+               +  
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL---PPNLYYLN 270

Query: 323 VLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 382
                   L   PP       SNN L  E+P+    L   E L+ S N+L+  +P+   N
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAE-VPELPQN 325

Query: 383 FSDELLVLDLQGNNL 397
               L  L ++ N L
Sbjct: 326 ----LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 14  HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE 73
                LN    E+        SLEEL++S N L    P        L+ L  S N    E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNH-LAE 318

Query: 74  LPISMGNLGSLKVLDLSQNG--YFGELPTSIRNL 105
           +P    N   LK L +  N    F ++P S+ +L
Sbjct: 319 VPELPQN---LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 188 CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247
              S +I S       L  L+++ N      +L  L      LE L  S N L+ + +  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNN------KLIELPALPPRLERLIASFNHLAEVPE-- 321

Query: 248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRF 280
                Q LK + +    L +FP+  ++   LR 
Sbjct: 322 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 59/350 (16%), Positives = 95/350 (27%), Gaps = 42/350 (12%)

Query: 35  SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
              EL+L+   LSS  P    +L   + L  S N    ELP       SLK L +  N  
Sbjct: 39  QAHELELNNLGLSS-LPELPPHL---ESLVASCNS-LTELP---ELPQSLKSLLVDNNNL 90

Query: 95  FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
                 ++ +L  L +     NN   + P    +     +    +             F 
Sbjct: 91  K-----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
                 L       +L              +   N S +    L    +           
Sbjct: 146 AAGNNQLEELPELQNLPFL---------TAIYADNNSLKKLPDLPLSLESIVAGNNILEE 196

Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN 274
              ++    LT+      L  +L  L    +A +   +       L         +    
Sbjct: 197 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 256

Query: 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVP 334
                                 L     +L   N S+N L                LP  
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--------------LPAL 302

Query: 335 PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LPQCLGN 382
           PP     +AS N L  E+P    N   L+ L + +N L     +P+ + +
Sbjct: 303 PPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 50/320 (15%), Positives = 84/320 (26%), Gaps = 22/320 (6%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69
            +   L+L+   L   LP    +L   E L  S N L +E P    +L SL   + +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSL-TELPELPQSLKSLLVDNNNLKA 92

Query: 70  FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNL------FSLEKLDLSFNNFSGEFP 123
                P+      S   L+             I                L F        
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 124 WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
                  +L  L                  +    +   +       L  +  L ++ A 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 184 NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243
           N           S      +   L       + +  LDV    +  L  L  +L  L+  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 244 TKATSDTTSQ--KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNM 301
           +            L+ + + +  L + P        L  +  S N +        +    
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELP 323

Query: 302 QNLNGFNFSHNLLTGFDQHP 321
           QNL   +  +N L  F   P
Sbjct: 324 QNLKQLHVEYNPLREFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
            +P+    L +   L  S N L  E+P       +L++L +  N L   +P    ++  L
Sbjct: 298 ELPALPPRLER---LIASFNHLA-EVP---ELPQNLKQLHVEYNPLRE-FPDIPESVEDL 349

Query: 61  K 61
           +
Sbjct: 350 R 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 22/216 (10%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            L+  + +    + +     V+  +L  +  L      +++   +    L++L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPT--------------SIRNLFSLEKLDL 113
           N+     P+      +   L  +       +                +     +      
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGP 173
                  +    +       L  L            + N ++L  L    N  S   + P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190

Query: 174 IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDL 209
           + +L +L  +++     S    S L N S L  + L
Sbjct: 191 LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232
           P   L +   I   K N +  +T    +L  +T L         +  +  L     NL  
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYL----NNLIG 67

Query: 233 LGLSLNRLSVLTKATS--DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG 290
           L L  N+++ L    +    T  +L    L++ +       ++              + G
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 291 KVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG 350
                +L  ++  +   +    L             +            T  A +N ++ 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 351 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL 392
             P  + +L  L  + L +N +S + P  L N S  L ++ L
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 31  GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90
            NL  L  L    N +S      + +L +L E+ L  N+     P++  N  +L ++ L+
Sbjct: 170 ANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDL 65
           L NLSKL  L    N++    P+   +L +L E+ L  N +S      + N S+L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

Query: 66  S 66
           +
Sbjct: 225 T 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 28/196 (14%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
             ++ +  +L    +     V+   L+S++++  + + + S   I    L ++ +L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 68  NRFFGELPIS------------------MGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109
           N+     P++                         K+  LS           + +L  LE
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD 169
            L L  N  +     S                        +   T+LQ L+L  N+ S  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTL----SLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 192

Query: 170 LLGPIGNLRSLEAINV 185
            L  +  L++L+ + +
Sbjct: 193 -LRALAGLKNLDVLEL 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 34/329 (10%), Positives = 86/329 (26%), Gaps = 37/329 (11%)

Query: 83  SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE----FPWSTGNFSSLKLLDLR 138
           SLK+  ++       +   +    S++++ LS N    E       +  +   L++ +  
Sbjct: 9   SLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
                      + +        L                  L  + ++   F       L
Sbjct: 68  DIFTG-----RVKDEIPEALRLLLQALL---------KCPKLHTVRLSDNAFGPTAQEPL 113

Query: 199 RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYI 258
            +             +   +         + L+ L ++    +     +      +L+  
Sbjct: 114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 173

Query: 259 GLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD 318
            ++           +     R +        G  P+ +    ++ L        L    +
Sbjct: 174 SMKEWA--------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 225

Query: 319 QHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWI------CNLNILESLVLSHNNL 372
               +            P       ++  L+    + +           L++L L +N +
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 285

Query: 373 SG----LLPQCLGNFSDELLVLDLQGNNL 397
                  L   +     +LL L+L GN  
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 44/321 (13%), Positives = 80/321 (24%), Gaps = 17/321 (5%)

Query: 10  SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIG----NLSSLKELDL 65
            K L LD    E +  +   +    S++E+ LS N + +E    +     +   L+  + 
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 66  SQN---RFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEF 122
           S     R   E+P ++  L    +     +                    LS +      
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 123 PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182
                         +        V     N   L+ +  G N                 A
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-------NGSMKEWA 179

Query: 183 INVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV 242
                      +      +       L         EL VL         LG S   +++
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 243 LTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWL---LDP 299
            +             +  R                L+ + L  N I+    + L   +D 
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 300 NMQNLNGFNFSHNLLTGFDQH 320
            M +L     + N  +  D  
Sbjct: 300 KMPDLLFLELNGNRFSEEDDV 320

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 31  GNLHSLEELDLSANFLSSEWPISI-----GNLSSLKELDLSQNRFFGELPISMGNLGSLK 85
                L+ L L  N +  +   ++       +  L  L+L+ NR F E    +  +  + 
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREV- 327

Query: 86  VLDLSQNGYFGEL 98
                  G   EL
Sbjct: 328 -FSTRGRGELDEL 339

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 16/200 (8%)

Query: 8   NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67
            L++ +   L    +     VS  +L  +  L      + S   +    L++L +++ S 
Sbjct: 16  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 68  NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG 127
           N+     P+         +++ +Q      L                   F+ +      
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTG--------LTLFNNQITDIDP 123

Query: 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187
             +   L  L           ++   T LQ L+  SN  +   L P+ NL +LE ++++ 
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISS 181

Query: 188 CNFSGQITSSLRNLSQLTAL 207
              S    S L  L+ L +L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 6e-06
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 15  LDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL 74
           L L+  +L   +   +  L  +  LDLS N L +  P ++  L  L+ L  S N      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN-- 57

Query: 75  PISMGNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEKLDLSFNNFSGE 121
              + NL  L+ L L  N          + +   L  L+L  N+   E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 85  KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144
           +VL L+       +   +  L  +  LDLS N      P          L  L++     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNAL 55

Query: 145 KVPHSIGNFTQLQYLHLGSNNF-SGDLLGPIGNLRSLEAINVAKCNFSG------QITSS 197
           +    + N  +LQ L L +N       + P+ +   L  +N+   +         ++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 198 LRNLSQL 204
           L ++S +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 2   IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLK 61
           +   L  L  + HLDLS N L+   P ++  L  LE L  S N    E    + NL  L+
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGVANLPRLQ 68

Query: 62  ELDLSQNRFFG-ELPISMGNLGSLKVLDLSQN------GYFGELPTSIRNLFSL 108
           EL L  NR         + +   L +L+L  N      G    L   + ++ S+
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 15/120 (12%)

Query: 256 KYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315
           + + L   +LT   + L+    +  +DLS NR++   P       ++ L   + +   + 
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 316 GFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 375
           G    P                    L +N          + +   L  L L  N+L   
Sbjct: 60  GVANLP--------------RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 7/132 (5%)

Query: 32  NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
           N     ELDL    +          L     +D S N            L  LK L ++ 
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNN 72

Query: 92  NGYFGELPTSIRNLFSLEKLDLSFNNFSG----EFPWSTGNFSSLKLLDLRSCGFWGKVP 147
           N          + L  L +L L+ N+       +   S  + + L +L            
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 148 HSIGNFTQLQYL 159
           + I    Q++ L
Sbjct: 133 YVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 15/143 (10%)

Query: 4   SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKEL 63
           +   N  +   LDL   ++   +      L   + +D S N +          L  LK L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 64  DLSQNRFFGELPISM--------GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115
            ++ NR                   L +  +++L        L +               
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL----RNPV 124

Query: 116 NNFSGEFPWSTGNFSSLKLLDLR 138
            N      +       +++LD +
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 9/148 (6%)

Query: 41  LSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPT 100
           L+A  +         N    +ELDL   +    +      L     +D S N    +L  
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLD- 57

Query: 101 SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF----WGKVPHSIGNFTQL 156
               L  L+ L ++ N               L  L L +             S+ + T L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 157 QYLHLGSNNFSGDLLGPIGNLRSLEAIN 184
             L     N     L  I  +  +  ++
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 1   RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL 60
           ++   +          L L  L+      +   +    L+  ++  ++   I   N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 61  KELDLSQNRF--FGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
             L+LS NR     ++   +    +LK+L+LS N    E          LE+L L  N+ 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 119 SGEFP 123
           S  F 
Sbjct: 128 SDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 59  SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
           S + LDL   R   +L           VL+   +     L     N+  L  L+LS N  
Sbjct: 23  SQQALDLKGLRSDPDL----VAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRL 77

Query: 119 SG--EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167
               +         +LK+L+L       +         +L+ L L  N+ S
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 31  GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP 75
                   LD+S   + S     + NL  L+       +   +LP
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 53  SIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPT 100
                S    LD+S+ R        + NL  L+           +LPT
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=4.6e-29  Score=243.28  Aligned_cols=341  Identities=23%  Similarity=0.297  Sum_probs=199.4

Q ss_pred             CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739            9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      +.+|++|+++++.|+. + +.+..+++|++|++++|++++..+  ++++++|++|++++|++.+..  .++++++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccccccccc
Confidence            4566777777776663 2 245666677777777777665432  666777777777777665332  256667777777


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      ++++.+++..+  ......+.......|.+....+................     .....+...+.........|... 
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-  188 (384)
T d2omza2         117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS-  188 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc-
Confidence            76666644322  23344555555555544322111111111111111110     11122333344444444444332 


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                       .......+++++.+++++|.+++..+  ...+++|++|++++|.++....    +..+++|+.+++++|.+...+.   
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---  258 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP---  258 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcch----hhcccccchhccccCccCCCCc---
Confidence             22334556666677777766664433  3455667777777776655432    4556667777777765554432   


Q ss_pred             ccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739          249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK  328 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~  328 (477)
                      ...+++|++|+++++.++.++. +..++.++.+++++|++.+. + .+.  .+++++.|++++|++++..+         
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~-~-~~~--~~~~l~~L~ls~n~l~~l~~---------  324 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI-S-PIS--NLKNLTYLTLYFNNISDISP---------  324 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC-G-GGG--GCTTCSEEECCSSCCSCCGG---------
T ss_pred             ccccccCCEeeccCcccCCCCc-cccccccccccccccccccc-c-ccc--hhcccCeEECCCCCCCCCcc---------
Confidence            2234567777777777766653 55666777777777776642 2 233  56677777777777765421         


Q ss_pred             CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCC
Q 038739          329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN  395 (477)
Q Consensus       329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N  395 (477)
                         ...+++|+.|++++|++++ ++ .+.++++|++||+++|++++..|  +.+++ +|++|+|++|
T Consensus       325 ---l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~-~L~~L~L~~N  383 (384)
T d2omza2         325 ---VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQ  383 (384)
T ss_dssp             ---GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCT-TCSEEECCCE
T ss_pred             ---cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCC-CCCEeeCCCC
Confidence               1235667777777777764 34 68899999999999999997655  78898 9999999988

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.9e-29  Score=237.99  Aligned_cols=247  Identities=26%  Similarity=0.400  Sum_probs=138.2

Q ss_pred             CCCEEEcccccCCc--cccccCCCCCCCCEEeccc-CcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739           35 SLEELDLSANFLSS--EWPISIGNLSSLKELDLSQ-NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL  111 (477)
Q Consensus        35 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  111 (477)
                      ++++|+|+++.+.+  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|++++|++.+..+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45555555555554  2345555555555555554 45555555555555555555555555555555555555555555


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC-cEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcc
Q 038739          112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL-QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF  190 (477)
Q Consensus       112 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  190 (477)
                      ++++|.+.+.+|..+.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++                      
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~----------------------  188 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----------------------  188 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----------------------
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccc----------------------
Confidence            555555555555555555555555555555555555544444443 444444444444                      


Q ss_pred             ccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC-Ccc
Q 038739          191 SGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KFP  269 (477)
Q Consensus       191 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~-~~p  269 (477)
                        ..+..+..+.. ..++++++...+..+..  +..+++++.+++++|.+..  ..+....+++|+.|++++|+++ .+|
T Consensus       189 --~~~~~~~~l~~-~~l~l~~~~~~~~~~~~--~~~~~~l~~l~~~~~~l~~--~~~~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         189 --KIPPTFANLNL-AFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             --ECCGGGGGCCC-SEEECCSSEEEECCGGG--CCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred             --ccccccccccc-ccccccccccccccccc--ccccccccccccccccccc--cccccccccccccccCccCeecccCC
Confidence              44444443322 23444444444443332  3444445555555443221  1111223456777777777774 678


Q ss_pred             hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCc
Q 038739          270 NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL  313 (477)
Q Consensus       270 ~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~  313 (477)
                      ..+..+++|++|+|++|+++|.+|.. .  .+++|+.+++++|+
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~~-~--~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSS
T ss_pred             hHHhCCCCCCEEECcCCcccccCCCc-c--cCCCCCHHHhCCCc
Confidence            88888888888888888888888853 3  67788888888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.1e-29  Score=236.93  Aligned_cols=248  Identities=27%  Similarity=0.367  Sum_probs=213.2

Q ss_pred             CCCCEEEccCCCCCC--CccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCE
Q 038739           10 SKLLHLDLSLNELQG--ELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV   86 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   86 (477)
                      .++++|+|+++.+.+  .+|..++++++|++|+|++ |+++|.+|..++++++|++|++++|++.+..+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999999987  4788999999999999987 7899899999999999999999999999888988999999999


Q ss_pred             EeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCC-CEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739           87 LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL-KLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN  165 (477)
Q Consensus        87 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  165 (477)
                      +++++|.+.+.+|..+.++++|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++.+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999999999999999999999999999999999999888776 889999999999988888877554 79999999


Q ss_pred             CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739          166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK  245 (477)
Q Consensus       166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  245 (477)
                      ..+.++..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++..|..  +..+++|++|++++|+++  +.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~--l~~L~~L~~L~Ls~N~l~--g~  283 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLC--GE  283 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEE--EE
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChH--HhCCCCCCEEECcCCccc--cc
Confidence            999899999999999999999999987655 5788899999999999999888766  788888998888888543  33


Q ss_pred             cCCccCcCcccEEEccCC
Q 038739          246 ATSDTTSQKLKYIGLRSC  263 (477)
Q Consensus       246 ~~~~~~~~~L~~L~L~~n  263 (477)
                      +|....+++|+.+++++|
T Consensus       284 iP~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         284 IPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCCSTTGGGSCGGGTCSS
T ss_pred             CCCcccCCCCCHHHhCCC
Confidence            332223334444444444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=6.2e-27  Score=228.05  Aligned_cols=324  Identities=22%  Similarity=0.278  Sum_probs=228.2

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      .+..+++|++|++++|+|++..  .++++++|++|++++|++.+..+  ++.+++|+.|+++++.+++..+  ......+
T Consensus        61 gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~  134 (384)
T d2omza2          61 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL  134 (384)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--cccccccccccccccccccccc--ccccccc
Confidence            5778999999999999999654  39999999999999999987543  8999999999999999875433  3455677


Q ss_pred             CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739           85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN  164 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  164 (477)
                      ..+....+.+....+..................     ...+.............+..  .....+..+++++.+++++|
T Consensus       135 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n  207 (384)
T d2omza2         135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN  207 (384)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccch-----hhhhcccccccccccccccc--ccccccccccccceeeccCC
Confidence            888887777654433332222222232222222     12344445555555555543  23345667778888888888


Q ss_pred             cCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739          165 NFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT  244 (477)
Q Consensus       165 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~  244 (477)
                      .+++..+  ...+++|++|++++|.++..  ..+..+++|+.+++++|.+.+..+    +..+++|++|+++++.+....
T Consensus       208 ~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~~~l~~~~  279 (384)
T d2omza2         208 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS  279 (384)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG
T ss_pred             ccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc----ccccccCCEeeccCcccCCCC
Confidence            7776443  35567788888888877642  356777888888888888776654    566788888888888665544


Q ss_pred             ccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCccc
Q 038739          245 KATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL  324 (477)
Q Consensus       245 ~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l  324 (477)
                      .   ...++.++.+.++.|.++.++ .+..+++++.|++++|++++..+  +.  .+++|+.|++++|++++...     
T Consensus       280 ~---~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~--l~--~l~~L~~L~L~~n~l~~l~~-----  346 (384)
T d2omza2         280 P---LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VS--SLTKLQRLFFANNKVSDVSS-----  346 (384)
T ss_dssp             G---GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG--GG--GCTTCCEEECCSSCCCCCGG-----
T ss_pred             c---ccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc--cc--cCCCCCEEECCCCCCCCChh-----
Confidence            3   224567788888888887664 36778888888888888876432  33  67888888888888875421     


Q ss_pred             CCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCc
Q 038739          325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNN  371 (477)
Q Consensus       325 ~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~  371 (477)
                             ...+++|++|++++|++++..|  +.++++|+.|+|++|.
T Consensus       347 -------l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         347 -------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             -------GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             -------HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence                   1235678888888888886554  8899999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.4e-25  Score=209.95  Aligned_cols=266  Identities=20%  Similarity=0.202  Sum_probs=208.7

Q ss_pred             CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      ..+.+|-++.+++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4677888888888 5565553  689999999999987666678899999999999999887778888999999999999


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCc--ccCCccccCCCCCcEEECCCCcCCC
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW--GKVPHSIGNFTQLQYLHLGSNNFSG  168 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~  168 (477)
                      +|+++. +|..+  ...++.|++++|.+.+..+..+.....+..++...+...  ...+..+..+++|+.+++++|.++.
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            998854 44432  357888999999888666666777778888888776542  3345567788899999999988874


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739          169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS  248 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  248 (477)
                       ++..  .+++|++|++++|..++..+..+..++.+++|++++|.+.+..+..  +..+++|++|++++|.++.++..  
T Consensus       165 -l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~--~~~l~~L~~L~L~~N~L~~lp~~--  237 (305)
T d1xkua_         165 -IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGG--  237 (305)
T ss_dssp             -CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCSSCCTT--
T ss_pred             -cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc--ccccccceeeecccccccccccc--
Confidence             3333  2578999999999888888888888999999999999988876654  77889999999999987766432  


Q ss_pred             ccCcCcccEEEccCCCCCCcch-------hhhcCCCcCEEeccCCccc
Q 038739          249 DTTSQKLKYIGLRSCNLTKFPN-------FLQNQHHLRFMDLSDNRIQ  289 (477)
Q Consensus       249 ~~~~~~L~~L~L~~n~l~~~p~-------~l~~~~~L~~L~Ls~n~i~  289 (477)
                      ...+++|++|++++|+|+.++.       ......+|+.|+|++|++.
T Consensus       238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            2357789999999999987753       2345678999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.9e-25  Score=209.32  Aligned_cols=246  Identities=18%  Similarity=0.215  Sum_probs=120.7

Q ss_pred             CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEcc
Q 038739          107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA  186 (477)
Q Consensus       107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  186 (477)
                      ++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++.. +..+  ...++.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccch--hhhhhhhhcc
Confidence            344444444444422223344444444444444444443344444444444444444444422 2111  2344555555


Q ss_pred             CCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC
Q 038739          187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT  266 (477)
Q Consensus       187 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~  266 (477)
                      +|.+.+..+..+.....+..++...+...........+..+++|+.+++++|.+..++..    .+++|++|++++|...
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~----~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKIT  184 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----CCTTCSEEECTTSCCC
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc----cCCccCEEECCCCcCC
Confidence            555554444444455555555555554333222222344455555555555544332211    2345555555555553


Q ss_pred             Cc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCC
Q 038739          267 KF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASN  345 (477)
Q Consensus       267 ~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~  345 (477)
                      .. +..+..++.+++|++++|++.+..+.++.  .+++|++|+|++|+++                              
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~--~l~~L~~L~L~~N~L~------------------------------  232 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLV------------------------------  232 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSSCCS------------------------------
T ss_pred             CCChhHhhcccccccccccccccccccccccc--ccccceeeeccccccc------------------------------
Confidence            32 34455556666666666666655555544  5555555555555443                              


Q ss_pred             CcCccCCChhhhccCCCCeEeCCCCcCcccCCchh------hhcccccceeecCCCcC
Q 038739          346 NSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL------GNFSDELLVLDLQGNNL  397 (477)
Q Consensus       346 n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l------~~l~~~L~~L~Ls~N~l  397 (477)
                           .+|.+|..+++|++|+|++|+|+..-...|      ...+ +|+.|+|++|++
T Consensus       233 -----~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~-~L~~L~L~~N~~  284 (305)
T d1xkua_         233 -----KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA-SYSGVSLFSNPV  284 (305)
T ss_dssp             -----SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC-CCSEEECCSSSS
T ss_pred             -----ccccccccccCCCEEECCCCccCccChhhccCcchhcccC-CCCEEECCCCcC
Confidence                 345566666777777777777663322222      2334 667777777766

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=208.10  Aligned_cols=223  Identities=21%  Similarity=0.191  Sum_probs=188.1

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc-C
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS-Q   91 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~   91 (477)
                      ..++.++++++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..+..+..++.++.. .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            45677888887 5665543  578999999999987777789999999999999999988888888888899988775 4


Q ss_pred             CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739           92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL  171 (477)
Q Consensus        92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  171 (477)
                      +.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            55666667788999999999999999886677778888899999999999987777788888999999999999988878


Q ss_pred             cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739          172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL  240 (477)
Q Consensus       172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i  240 (477)
                      ..+.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..  +..+++|++|++++|.+
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc--cccccccCEEEecCCCC
Confidence            88889999999999999998888889999999999999999998877655  78888999999998854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.2e-25  Score=204.33  Aligned_cols=215  Identities=22%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecc-cCcCcccCCcccCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLS-QNRFFGELPISMGN   80 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~   80 (477)
                      +|..+.  +.+++|+|++|+|+...+.+|.++++|++|++++|++....+..+..++.++.++.. .+.+....+..|.+
T Consensus        26 iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            566554  578999999999997777789999999999999999998888889999999999875 55666666888999


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH  160 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  160 (477)
                      +++|++|++++|.+....+..+....+|+.+++++|.+++..+..+..+++|++|++++|.+.+..+.+|.++++|++++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            99999999999999777777888999999999999999977778899999999999999999888888999999999999


Q ss_pred             CCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739          161 LGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI  218 (477)
Q Consensus       161 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  218 (477)
                      +++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+...-
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            9999999988999999999999999999999988899999999999999999987543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=193.18  Aligned_cols=203  Identities=23%  Similarity=0.245  Sum_probs=168.7

Q ss_pred             CCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCE
Q 038739            7 GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV   86 (477)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   86 (477)
                      .+...+.++|.++++++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|+|++|+++. ++ .++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence            45667788899999998 5676554  579999999999998777889999999999999999873 44 4578899999


Q ss_pred             EeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739           87 LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus        87 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      |++++|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            9999999854 466788899999999999998877777788888999999999988777777778888899999999998


Q ss_pred             CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739          167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG  216 (477)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  216 (477)
                      ++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|.+..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8877777888888899999888887 667777778888888888887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.2e-23  Score=187.92  Aligned_cols=185  Identities=23%  Similarity=0.168  Sum_probs=166.6

Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739            1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN   80 (477)
Q Consensus         1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   80 (477)
                      +||+.+.  +++++|+|++|.|++..+..|.++++|++|+|++|+++.. + .++.+++|++|++++|+++ ..+..+..
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~   98 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccccccc-cccccccc
Confidence            3676664  5899999999999977778899999999999999999854 3 4688999999999999998 56778899


Q ss_pred             CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739           81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH  160 (477)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  160 (477)
                      +++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++..+..|..+++|++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            99999999999999888888889999999999999999977777888899999999999999988888899999999999


Q ss_pred             CCCCcCCCcCCcCCCCCCCCCEEEccCCccc
Q 038739          161 LGSNNFSGDLLGPIGNLRSLEAINVAKCNFS  191 (477)
Q Consensus       161 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  191 (477)
                      |++|+++ .+|..+..+++|+.|++++|.+.
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999 67777888999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.89  E-value=1.9e-20  Score=179.23  Aligned_cols=303  Identities=25%  Similarity=0.266  Sum_probs=172.1

Q ss_pred             CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739           10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL   89 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   89 (477)
                      .++++|||+++.++ .+|+.   .++|++|++++|+++ .+|..   +.+|++|++++|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            35788888888887 45642   467888888888887 44543   356888888888776 33321   145888888


Q ss_pred             cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc
Q 038739           90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD  169 (477)
Q Consensus        90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  169 (477)
                      ++|.+. .+|. ++.+++|++|+++++.+.. .+..   ...+..+.+..+...  ....+..++.++.+++++|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            888875 3443 5677888888888877763 2322   355667777655442  234566677778888877776532


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                      . .   .....+.+....+.+. .++ .+..++.|+.+++++|......      ....++..+.+.++.+......   
T Consensus       178 ~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~------~~~~~l~~~~~~~~~~~~~~~~---  242 (353)
T d1jl5a_         178 P-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLPEL---  242 (353)
T ss_dssp             C-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCSCCCCC---
T ss_pred             c-c---cccccccccccccccc-ccc-cccccccccccccccccccccc------cccccccccccccccccccccc---
Confidence            1 1   1223445555555443 222 2456677777777777654322      2235566666666644332221   


Q ss_pred             cCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCC
Q 038739          250 TTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKG  329 (477)
Q Consensus       250 ~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~  329 (477)
                        ...+...++..+.+..++..   .......++..+.+.+. +.     .+++|++|++++|+++.             
T Consensus       243 --~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~~-~~-----~~~~L~~L~Ls~N~l~~-------------  298 (353)
T d1jl5a_         243 --PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSL-CD-----LPPSLEELNVSNNKLIE-------------  298 (353)
T ss_dssp             --CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEE-CC-----CCTTCCEEECCSSCCSC-------------
T ss_pred             --cccccccccccccccccccc---cchhcccccccCccccc-cc-----cCCCCCEEECCCCccCc-------------
Confidence              23455555555544333211   12344555555555422 11     34566666666666652             


Q ss_pred             CCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739          330 PLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP  377 (477)
Q Consensus       330 ~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  377 (477)
                       +|..+++|+.|++++|+++ .+|+.   +++|++|+|++|+++ .+|
T Consensus       299 -lp~~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         299 -LPALPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             -CCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             -cccccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence             2333455555555555555 34432   344556666666655 344

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=1.7e-19  Score=172.53  Aligned_cols=304  Identities=28%  Similarity=0.279  Sum_probs=206.1

Q ss_pred             CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEc
Q 038739           34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDL  113 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  113 (477)
                      .++++|+|+++.++. +|+.   +++|++|++++|+++ .+|..+   .+|+.|++++|+++. +++ +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            468899999999884 5643   578999999999988 667553   578999999998753 332 1  136899999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739          114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ  193 (477)
Q Consensus       114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  193 (477)
                      ++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+....  ...+..++.++.++++.|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence            999887 5563 57788999999988877433 22   23567777777665543  34566778888888888876532


Q ss_pred             cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhh
Q 038739          194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQ  273 (477)
Q Consensus       194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~  273 (477)
                      ..    .....+.+...++.+.....    ...++.++.+++++|.....+.     ...++..+.+.++.+...+..  
T Consensus       178 ~~----~~~~~~~l~~~~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~--  242 (353)
T d1jl5a_         178 PD----LPLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPEL--  242 (353)
T ss_dssp             CC----CCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCCC--
T ss_pred             cc----cccccccccccccccccccc----cccccccccccccccccccccc-----ccccccccccccccccccccc--
Confidence            21    22334566666655543322    4567778888888775443322     234577777777777555432  


Q ss_pred             cCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCC
Q 038739          274 NQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIP  353 (477)
Q Consensus       274 ~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p  353 (477)
                       ...+...++..+.+.+.. .     -.......++..+.+.+.              +..+++|++|++++|+++ .+|
T Consensus       243 -~~~l~~~~~~~~~~~~l~-~-----l~~~~~~~~~~~~~~~~~--------------~~~~~~L~~L~Ls~N~l~-~lp  300 (353)
T d1jl5a_         243 -PQSLTFLDVSENIFSGLS-E-----LPPNLYYLNASSNEIRSL--------------CDLPPSLEELNVSNNKLI-ELP  300 (353)
T ss_dssp             -CTTCCEEECCSSCCSEES-C-----CCTTCCEEECCSSCCSEE--------------CCCCTTCCEEECCSSCCS-CCC
T ss_pred             -cccccccccccccccccc-c-----ccchhcccccccCccccc--------------cccCCCCCEEECCCCccC-ccc
Confidence             345666666666554321 1     113344566666666543              445789999999999999 577


Q ss_pred             hhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCC
Q 038739          354 SWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC  403 (477)
Q Consensus       354 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~  403 (477)
                      ..   +++|+.|+|++|+|+ .+|..   ++ +|++|++++|+++ .+|.
T Consensus       301 ~~---~~~L~~L~L~~N~L~-~l~~~---~~-~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         301 AL---PPRLERLIASFNHLA-EVPEL---PQ-NLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CC---CTTCCEEECCSSCCS-CCCCC---CT-TCCEEECCSSCCS-SCCC
T ss_pred             cc---cCCCCEEECCCCcCC-ccccc---cC-CCCEEECcCCcCC-CCCc
Confidence            53   678999999999998 67753   34 8999999999986 5553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.1e-23  Score=203.87  Aligned_cols=387  Identities=16%  Similarity=0.108  Sum_probs=230.2

Q ss_pred             CCCCEEEccCCCCCCCc-cccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCccc----CCcccC-
Q 038739           10 SKLLHLDLSLNELQGEL-PVSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFGE----LPISMG-   79 (477)
Q Consensus        10 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~-   79 (477)
                      ++|++||++++++++.. ...+..++++++|+|++|.++..    ++.++..+++|++|||++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998642 33456789999999999998842    345578899999999999998632    222332 


Q ss_pred             CCCCCCEEeCcCCCCCCc----ccccccCCCCccEEEccCCcCcCCCCcc----c-cCCCCCCEEEccCCCCcccC----
Q 038739           80 NLGSLKVLDLSQNGYFGE----LPTSIRNLFSLEKLDLSFNNFSGEFPWS----T-GNFSSLKLLDLRSCGFWGKV----  146 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~-~~l~~L~~L~L~~n~~~~~~----  146 (477)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......    + ....................    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            345899999999998754    3456788999999999999886321111    1 11223334444433321111    


Q ss_pred             CccccCCCCCcEEECCCCcCCCcCCc----CC-CCCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCccc
Q 038739          147 PHSIGNFTQLQYLHLGSNNFSGDLLG----PI-GNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRGM  217 (477)
Q Consensus       147 ~~~l~~l~~L~~L~l~~n~l~~~~~~----~l-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~  217 (477)
                      ...+.....++.++++.+........    .+ ........+++..+.+...    ....+...+.++.+++++|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            11233456677777777654421100    01 1123455666666655422    123345567777777777765432


Q ss_pred             c---chhhhhcCCCCCCEEeCCCCCCccccccCCc---cCcCcccEEEccCCCCCCc-----chhh-hcCCCcCEEeccC
Q 038739          218 I---ELDVLLTSWKNLEFLGLSLNRLSVLTKATSD---TTSQKLKYIGLRSCNLTKF-----PNFL-QNQHHLRFMDLSD  285 (477)
Q Consensus       218 ~---~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~---~~~~~L~~L~L~~n~l~~~-----p~~l-~~~~~L~~L~Ls~  285 (477)
                      .   ...........++.+++++|.+.........   ...+.++.+++++|.++..     ...+ .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence            1   1111244566777777777755433321111   1355677777777776421     1111 2345677888887


Q ss_pred             CcccccCCccCCc--ccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccC----CChhhhcc
Q 038739          286 NRIQGKVPKWLLD--PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE----IPSWICNL  359 (477)
Q Consensus       286 n~i~~~~p~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~----~p~~~~~l  359 (477)
                      |.+++.....+..  ...++|++|+|++|++++.....+     ...+....+.|++|++++|.+++.    +++.+..+
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l-----~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  396 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL-----CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  396 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH-----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchh-----hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence            7776543222210  144677888888877753210000     000111234577888888888743    44556678


Q ss_pred             CCCCeEeCCCCcCcccCCchh----hhcccccceeecCCCcCCccc
Q 038739          360 NILESLVLSHNNLSGLLPQCL----GNFSDELLVLDLQGNNLPLSK  401 (477)
Q Consensus       360 ~~L~~LdLs~N~l~~~~p~~l----~~l~~~L~~L~Ls~N~l~~~~  401 (477)
                      ++|++|||++|+++......+    ......|++|++.+|.++...
T Consensus       397 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            999999999999986544333    222226899999999886543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.4e-19  Score=160.65  Aligned_cols=204  Identities=22%  Similarity=0.310  Sum_probs=138.1

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      ..++++.+.+++..  .++.+.+|++|++.+|+++..  ..+..+++|++|++++|++++..  .+..+++|+++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence            34456666666433  356677788888888887754  34777888888888888876433  3777788888888888


Q ss_pred             CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739           93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG  172 (477)
Q Consensus        93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  172 (477)
                      .++. + ..+..+++|++++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+.+..  
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--  167 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--
T ss_pred             cccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--
Confidence            7753 2 3467778888888887776532  2355567777777777766433  23566677778888777776432  


Q ss_pred             CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCC
Q 038739          173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS  236 (477)
Q Consensus       173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls  236 (477)
                      .+.++++|++|++++|++++. + .+..+++|++|++++|++++..+    +..+++|+.|+++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc----cccCCCCCEEEee
Confidence            366777777777777777642 2 36677777777777777766543    5667777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=5.9e-19  Score=158.10  Aligned_cols=189  Identities=23%  Similarity=0.320  Sum_probs=159.7

Q ss_pred             CCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCE
Q 038739            7 GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV   86 (477)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   86 (477)
                      +++.+|++|++.+|.|+. ++ .+..+++|++|++++|++++..+  +..+++|+++++++|.++ .+ ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cc-ccccccccccc
Confidence            457899999999999985 43 58999999999999999987644  899999999999999987 33 36889999999


Q ss_pred             EeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739           87 LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF  166 (477)
Q Consensus        87 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  166 (477)
                      ++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+...  ..++++++|++|++++|++
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            99999987544  4467788999999999988743  3467889999999999988543  3488999999999999999


Q ss_pred             CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcC
Q 038739          167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ  211 (477)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  211 (477)
                      ++. + .+..+++|++|++++|++++..  .+.++++|+.|++++
T Consensus       186 ~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            863 3 4788999999999999998643  388999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-21  Score=193.01  Aligned_cols=360  Identities=18%  Similarity=0.137  Sum_probs=239.4

Q ss_pred             CCCCEEEcccccCCccc-cccCCCCCCCCEEecccCcCcc----cCCcccCCCCCCCEEeCcCCCCCCc----cccccc-
Q 038739           34 HSLEELDLSANFLSSEW-PISIGNLSSLKELDLSQNRFFG----ELPISMGNLGSLKVLDLSQNGYFGE----LPTSIR-  103 (477)
Q Consensus        34 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~-  103 (477)
                      .+|++||+++|++++.. ...+..++++++|+|++|.++.    .+...+..+++|++|||++|+++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998642 3345678999999999999873    2345567899999999999998532    222332 


Q ss_pred             CCCCccEEEccCCcCcCC----CCccccCCCCCCEEEccCCCCcccCCccc----c-CCCCCcEEECCCCcCCCcC----
Q 038739          104 NLFSLEKLDLSFNNFSGE----FPWSTGNFSSLKLLDLRSCGFWGKVPHSI----G-NFTQLQYLHLGSNNFSGDL----  170 (477)
Q Consensus       104 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~----  170 (477)
                      ...+|++|++++|+++..    ++..+..+++|++|++++|.+.......+    . ..............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            335899999999998743    34567788999999999998854322211    1 2223444555444332211    


Q ss_pred             CcCCCCCCCCCEEEccCCcccccc----chhh-hcCCCCCEEeCcCCcCcccc--chhhhhcCCCCCCEEeCCCCCCccc
Q 038739          171 LGPIGNLRSLEAINVAKCNFSGQI----TSSL-RNLSQLTALDLAQNSYRGMI--ELDVLLTSWKNLEFLGLSLNRLSVL  243 (477)
Q Consensus       171 ~~~l~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~i~~~  243 (477)
                      ...+.....++.++++.+......    ...+ ........+++..+.+....  .....+...+.++.+++++|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            112334577889999988765321    1122 23346778888888665332  1222355678999999999965332


Q ss_pred             cccC----CccCcCcccEEEccCCCCCCc-----chhhhcCCCcCEEeccCCcccccCCccCCc---ccCCCCCeEEecC
Q 038739          244 TKAT----SDTTSQKLKYIGLRSCNLTKF-----PNFLQNQHHLRFMDLSDNRIQGKVPKWLLD---PNMQNLNGFNFSH  311 (477)
Q Consensus       244 ~~~~----~~~~~~~L~~L~L~~n~l~~~-----p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~---~~l~~L~~L~Ls~  311 (477)
                      ....    .......++.+++++|.+...     ...+...+.++.+++++|.+.+.....+..   .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence            2111    111456899999999998533     245677899999999999987543322210   1346899999999


Q ss_pred             CcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCC----Chhhh-ccCCCCeEeCCCCcCccc----CCchhhh
Q 038739          312 NLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEI----PSWIC-NLNILESLVLSHNNLSGL----LPQCLGN  382 (477)
Q Consensus       312 N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~----p~~~~-~l~~L~~LdLs~N~l~~~----~p~~l~~  382 (477)
                      |.++......+      +......++|+.|++++|.+++..    +..+. ..+.|++|+|++|+|++.    +++.+..
T Consensus       322 ~~l~~~~~~~l------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  395 (460)
T d1z7xw1         322 CSFTAACCSHF------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  395 (460)
T ss_dssp             SCCBGGGHHHH------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhc------ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc
Confidence            98875321110      001122457999999999998643    33333 357799999999999854    4455667


Q ss_pred             cccccceeecCCCcCCcc
Q 038739          383 FSDELLVLDLQGNNLPLS  400 (477)
Q Consensus       383 l~~~L~~L~Ls~N~l~~~  400 (477)
                      .+ +|++|++++|+++..
T Consensus       396 ~~-~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         396 NH-SLRELDLSNNCLGDA  412 (460)
T ss_dssp             CC-CCCEEECCSSSCCHH
T ss_pred             CC-CCCEEECCCCcCCHH
Confidence            77 999999999999653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.1e-19  Score=159.65  Aligned_cols=202  Identities=15%  Similarity=0.107  Sum_probs=133.2

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCccc-CCcccCCCCCCCEEeCcC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE-LPISMGNLGSLKVLDLSQ   91 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~   91 (477)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+... .+..|..+++++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            67888888887 5665443  5788899998888866666788888899999988887653 345677888888888764


Q ss_pred             -CCCCCcccccccCCCCccEEEccCCcCcCCCCc-cccCCCCCCEEEccCCCCcccCCccccCCC-CCcEEECCCCcCCC
Q 038739           92 -NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLRSCGFWGKVPHSIGNFT-QLQYLHLGSNNFSG  168 (477)
Q Consensus        92 -n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~  168 (477)
                       |++....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             566666667788888888888888887633221 223344444555555566554445555544 67777777777765


Q ss_pred             cCCcCCCCCCCCCEE-EccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739          169 DLLGPIGNLRSLEAI-NVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI  218 (477)
Q Consensus       169 ~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  218 (477)
                      .....+ ...+++.+ ++++|+++...+..|.++++|++|++++|+++...
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            433333 33444444 45556666444455666777777777777666443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.2e-19  Score=159.61  Aligned_cols=205  Identities=21%  Similarity=0.145  Sum_probs=158.3

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccc-cccCCCCCCCCEEeccc-CcCcccCCcccC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW-PISIGNLSSLKELDLSQ-NRFFGELPISMG   79 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~   79 (477)
                      +|+.+.  +++++|++++|.|+...+.+|.++++|++|++++|.+...+ +.+|.++++++++++.. |.+....+..|.
T Consensus        23 iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          23 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccc
Confidence            566553  58999999999999666678999999999999999987654 45688999999999875 677777788899


Q ss_pred             CCCCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccCCC-CCCEEEccCCCCcccCCccccCCCCCc
Q 038739           80 NLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS-SLKLLDLRSCGFWGKVPHSIGNFTQLQ  157 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~  157 (477)
                      ++++|+++++++|++....+ ..+..+..+..+..+++.+....+..+..++ .++.|++++|.++...+..+ ..++++
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~  179 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLD  179 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEE
T ss_pred             ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhh
Confidence            99999999999999865432 2344566677777788888766566666654 78899999999976544444 455655


Q ss_pred             EE-ECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeC
Q 038739          158 YL-HLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDL  209 (477)
Q Consensus       158 ~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  209 (477)
                      .+ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++
T Consensus       180 ~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            55 57888898766667899999999999999998655556666666655544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=5.3e-18  Score=149.73  Aligned_cols=181  Identities=23%  Similarity=0.304  Sum_probs=134.7

Q ss_pred             EEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCC
Q 038739           15 LDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY   94 (477)
Q Consensus        15 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   94 (477)
                      ..+..+.+++.++.  ..+.+|++|++++|.+++..  .+..+++|++|++++|++++. + .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccc
Confidence            34555666544432  34667888888888887542  377888888888888888743 3 367888888888888888


Q ss_pred             CCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCC
Q 038739           95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI  174 (477)
Q Consensus        95 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  174 (477)
                      ++ ++ .+..+++|+.|++++|.+. .+ ..+..++.++.+++++|.++..  ..+..+++|+++++++|++++..  .+
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l  174 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PL  174 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cc-cc-ccccccccccccccccccc-cc-cccccccccccccccccccccc--ccccccccccccccccccccccc--cc
Confidence            64 33 5788888888888888876 23 3577788888888888887542  45677888999999998887532  37


Q ss_pred             CCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcC
Q 038739          175 GNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ  211 (477)
Q Consensus       175 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  211 (477)
                      .++++|++|++++|++++ ++ .+.++++|++|+|++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            788889999999998874 34 588888999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.2e-17  Score=146.05  Aligned_cols=178  Identities=22%  Similarity=0.294  Sum_probs=134.1

Q ss_pred             EEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC
Q 038739           14 HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG   93 (477)
Q Consensus        14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~   93 (477)
                      .+.++.+.+++.+.  ...++++++|++++|.++..  ..++.+++|++|++++|++++..  .++++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccc
Confidence            44566666665433  34567888899988888753  34778888999999988887543  37888889999998888


Q ss_pred             CCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcC
Q 038739           94 YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGP  173 (477)
Q Consensus        94 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  173 (477)
                      +... + .+.++++|++|++++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|.+++.  ..
T Consensus        96 ~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~  167 (199)
T d2omxa2          96 IADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KP  167 (199)
T ss_dssp             CCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GG
T ss_pred             cccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--cc
Confidence            7543 2 478888899999988887632  347778889999998888743 3 3578888999999999988753  24


Q ss_pred             CCCCCCCCEEEccCCccccccchhhhcCCCCCEE
Q 038739          174 IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTAL  207 (477)
Q Consensus       174 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  207 (477)
                      +.++++|++|++++|++++ ++ .++++++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7788899999999998875 33 57788888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-17  Score=146.28  Aligned_cols=178  Identities=22%  Similarity=0.287  Sum_probs=129.2

Q ss_pred             EEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCc
Q 038739           38 ELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN  117 (477)
Q Consensus        38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  117 (477)
                      .+.++.+.+++..+  ...++++++|++++|.++. + +.+..+++|++|++++|++++..  .++++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccc
Confidence            34556666665433  3456788888888888763 3 34677888888888888886543  27888888888888888


Q ss_pred             CcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchh
Q 038739          118 FSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSS  197 (477)
Q Consensus       118 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  197 (477)
                      +. .++ .+.+++.|+.|++++|.....  ..+..+++|+.|++++|.+..  ...+..+++|+.|++++|++++..  .
T Consensus        96 ~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--~  167 (199)
T d2omxa2          96 IA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--P  167 (199)
T ss_dssp             CC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--G
T ss_pred             cc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--c
Confidence            76 333 477888888888888877543  346778888888888888764  235777888888888888887532  4


Q ss_pred             hhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEE
Q 038739          198 LRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL  233 (477)
Q Consensus       198 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  233 (477)
                      +.++++|++|++++|++++..+    +..+++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~~----l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDISV----LAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCCcc----ccCCCCCCcC
Confidence            7788888888888888876432    5677777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.9e-18  Score=148.96  Aligned_cols=181  Identities=22%  Similarity=0.272  Sum_probs=134.1

Q ss_pred             EEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcC
Q 038739           39 LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF  118 (477)
Q Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  118 (477)
                      .++..+.+++.++.  ..+.+|++|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            35556666654432  3466788888888888643 2 4677888888888888886543  367888888888888888


Q ss_pred             cCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh
Q 038739          119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL  198 (477)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  198 (477)
                      ++ ++ .+..+++|+.|++++|.+..  ...+..+++++.+++++|.+++  +..+..+++|+++++++|++++..  .+
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l  174 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PL  174 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cc-cc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cc
Confidence            73 44 57778888888888887743  2457788888888888888875  334667888888888888887532  37


Q ss_pred             hcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCC
Q 038739          199 RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL  237 (477)
Q Consensus       199 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~  237 (477)
                      .++++|++|++++|.++....    +..+++|++|++++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCCChh----hcCCCCCCEEEccC
Confidence            788888888888888876432    67788888888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.9e-18  Score=150.38  Aligned_cols=130  Identities=26%  Similarity=0.242  Sum_probs=91.1

Q ss_pred             CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCcc-ccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739           12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE-WPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS   90 (477)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   90 (477)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            456777777777 5555443  5677777777777653 34556777777777777777776667777777777777777


Q ss_pred             CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc
Q 038739           91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG  144 (477)
Q Consensus        91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  144 (477)
                      +|++....+++|.++++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            777766666677777777777777777776666667777777777777776643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.5e-18  Score=147.40  Aligned_cols=129  Identities=24%  Similarity=0.214  Sum_probs=84.7

Q ss_pred             CCEEEcccccCCccccccCCCCCCCCEEecccCcCcc-cCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739           36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS  114 (477)
Q Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  114 (477)
                      .++++.++++++. +|..+.  +++++|+|++|++++ ..+..|.++++|++|++++|++....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3567777777763 444332  467777777777754 334556667777777777777766666667777777777777


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739          115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS  167 (477)
Q Consensus       115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  167 (477)
                      +|+++...+..|.++++|++|+|++|.+++..+.+|..+++|++|++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77777655666666777777777777766666666666666666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-17  Score=153.77  Aligned_cols=193  Identities=17%  Similarity=0.204  Sum_probs=102.5

Q ss_pred             CCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCC-CccccccC-CccC
Q 038739          174 IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR-LSVLTKAT-SDTT  251 (477)
Q Consensus       174 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~-~~~~  251 (477)
                      +..+++|++|++++|.+++.....+..+++|++|+++++.-.+..........+++|++|+++++. ++..+... ....
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            334444555555544444444444445555555555553211111111123345555555555541 11111000 0012


Q ss_pred             cCcccEEEccCCC--CC--CcchhhhcCCCcCEEeccCC-cccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCC
Q 038739          252 SQKLKYIGLRSCN--LT--KFPNFLQNQHHLRFMDLSDN-RIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPG  326 (477)
Q Consensus       252 ~~~L~~L~L~~n~--l~--~~p~~l~~~~~L~~L~Ls~n-~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  326 (477)
                      ++.|+.|+++++.  ++  .+......+++|++|++++| .+++..+..+.  .+++|++|++++|.             
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~--~~~~L~~L~L~~C~-------------  211 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLSLSRCY-------------  211 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTCT-------------
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc--ccCcCCEEECCCCC-------------
Confidence            3456666666542  32  23344567889999999886 46766666666  67888888888752             


Q ss_pred             CCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739          327 NKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES  405 (477)
Q Consensus       327 n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~  405 (477)
                                          .+++.....++++++|+.|+++++ ++.   ..+..+...+..|.+..++++...+...
T Consensus       212 --------------------~i~~~~l~~L~~~~~L~~L~l~~~-~~d---~~l~~l~~~lp~L~i~~~~ls~~~~~~~  266 (284)
T d2astb2         212 --------------------DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTI  266 (284)
T ss_dssp             --------------------TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             --------------------CCChHHHHHHhcCCCCCEEeeeCC-CCH---HHHHHHHHhCccccccCccCCCCCCCcc
Confidence                                223333456778899999999987 432   2222222244456677788876655443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=146.52  Aligned_cols=181  Identities=18%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             CCCCEEEccCCCCccc-CCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC-ccccc-cchhhhcCCCCCE
Q 038739          130 SSLKLLDLRSCGFWGK-VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC-NFSGQ-ITSSLRNLSQLTA  206 (477)
Q Consensus       130 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~  206 (477)
                      .+|++|++++|.++.. +...+..+++|++|+++++.+++..+..+..+++|++|++++| .+++. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3444555544443322 1223344455555555555444444444444555555555553 23321 1122334556666


Q ss_pred             EeCcCCc-CccccchhhhhcCCCCCCEEeCCCCC--CccccccCCccCcCcccEEEccCCC-CC-CcchhhhcCCCcCEE
Q 038739          207 LDLAQNS-YRGMIELDVLLTSWKNLEFLGLSLNR--LSVLTKATSDTTSQKLKYIGLRSCN-LT-KFPNFLQNQHHLRFM  281 (477)
Q Consensus       207 L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~--i~~~~~~~~~~~~~~L~~L~L~~n~-l~-~~p~~l~~~~~L~~L  281 (477)
                      |+++++. ++...........+++|+.|+++++.  ++..+.......+++|++|++++|. ++ .....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            6665542 22111111112234556666665531  1111111111135566666666653 33 233556677888888


Q ss_pred             eccCC-cccccCCccCCcccCCCCCeEEecCC
Q 038739          282 DLSDN-RIQGKVPKWLLDPNMQNLNGFNFSHN  312 (477)
Q Consensus       282 ~Ls~n-~i~~~~p~~~~~~~l~~L~~L~Ls~N  312 (477)
                      ++++| .+++.....+.  .+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~--~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELG--EIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGG--GCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHh--cCCCCCEEeeeCC
Confidence            88885 56665555555  6777888877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=132.44  Aligned_cols=128  Identities=20%  Similarity=0.116  Sum_probs=77.9

Q ss_pred             cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739            5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL   84 (477)
Q Consensus         5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L   84 (477)
                      .+.++.++++|+|++|+|+ .++..+..+++|++|++++|+++..  +.+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3456667777777777776 3354556667777777777777643  246667777777777777764444445566777


Q ss_pred             CEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCc----cccCCCCCCEEE
Q 038739           85 KVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPW----STGNFSSLKLLD  136 (477)
Q Consensus        85 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~  136 (477)
                      ++|++++|++..... ..+..+++|++|++++|.++ ..|.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            777777776643211 34566666666666666665 2221    244455555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=6.7e-17  Score=153.99  Aligned_cols=242  Identities=17%  Similarity=0.137  Sum_probs=155.1

Q ss_pred             ccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCccc----------CCcccCCCCCCCEEeCcCCC
Q 038739           28 VSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFGE----------LPISMGNLGSLKVLDLSQNG   93 (477)
Q Consensus        28 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls~n~   93 (477)
                      ..+.....|++|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|++|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455667788888887776542    223456677788888877654311          12334567788888888887


Q ss_pred             CCCc----ccccccCCCCccEEEccCCcCcCCCCc-------------cccCCCCCCEEEccCCCCccc----CCccccC
Q 038739           94 YFGE----LPTSIRNLFSLEKLDLSFNNFSGEFPW-------------STGNFSSLKLLDLRSCGFWGK----VPHSIGN  152 (477)
Q Consensus        94 l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~~~~~----~~~~l~~  152 (477)
                      +...    +...+..+++|++|++++|.+......             .....+.|+.+++++|.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            7553    233445667888888888876421100             112456788888888877532    2233556


Q ss_pred             CCCCcEEECCCCcCCCc-----CCcCCCCCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCccccch--h
Q 038739          153 FTQLQYLHLGSNNFSGD-----LLGPIGNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRGMIEL--D  221 (477)
Q Consensus       153 l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~--~  221 (477)
                      ++.|+.|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+.+....  .
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            77888888888887642     234466778888999988887643    345567888899999999888643221  1


Q ss_pred             hhhc--CCCCCCEEeCCCCCCccccccCCcc----CcCcccEEEccCCCCCCcc
Q 038739          222 VLLT--SWKNLEFLGLSLNRLSVLTKATSDT----TSQKLKYIGLRSCNLTKFP  269 (477)
Q Consensus       222 ~~~~--~~~~L~~L~ls~n~i~~~~~~~~~~----~~~~L~~L~L~~n~l~~~p  269 (477)
                      ..+.  ..+.|++|++++|.|...+......    ..+.|+.|++++|.+..-.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            1222  3467889999998765433222111    3567899999999886543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=2.6e-16  Score=149.87  Aligned_cols=240  Identities=21%  Similarity=0.233  Sum_probs=164.8

Q ss_pred             ccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc----------ccccccCCCCccEEEccCCc
Q 038739           52 ISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE----------LPTSIRNLFSLEKLDLSFNN  117 (477)
Q Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~Ls~n~  117 (477)
                      ..+.....|++|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3456678899999999887532    334567788999999988754321          12345667889999999998


Q ss_pred             CcCC----CCccccCCCCCCEEEccCCCCcccCCcc-------------ccCCCCCcEEECCCCcCCCcC----CcCCCC
Q 038739          118 FSGE----FPWSTGNFSSLKLLDLRSCGFWGKVPHS-------------IGNFTQLQYLHLGSNNFSGDL----LGPIGN  176 (477)
Q Consensus       118 l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~~----~~~l~~  176 (477)
                      +...    +...+..+++|++|++++|.+.......             ....+.|+.+++++|.++...    ...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            8653    2233456788999999988774321111             135678899999998876432    223456


Q ss_pred             CCCCCEEEccCCccccc-----cchhhhcCCCCCEEeCcCCcCccc--cchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739          177 LRSLEAINVAKCNFSGQ-----ITSSLRNLSQLTALDLAQNSYRGM--IELDVLLTSWKNLEFLGLSLNRLSVLTKATSD  249 (477)
Q Consensus       177 l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  249 (477)
                      ++.|++|++++|.+...     +...+..+++|+.|++++|.+...  ......+..+++|++|++++|.|...+.....
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            78899999999988642     234567788999999999987543  22223467788999999999977654332221


Q ss_pred             -----cCcCcccEEEccCCCCCC-----cchhhh-cCCCcCEEeccCCccccc
Q 038739          250 -----TTSQKLKYIGLRSCNLTK-----FPNFLQ-NQHHLRFMDLSDNRIQGK  291 (477)
Q Consensus       250 -----~~~~~L~~L~L~~n~l~~-----~p~~l~-~~~~L~~L~Ls~n~i~~~  291 (477)
                           ...+.|++|++++|.++.     +...+. ++++|++|++++|++...
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                 134579999999998853     334453 578899999999988743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.3e-15  Score=118.05  Aligned_cols=102  Identities=26%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739           13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN   92 (477)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n   92 (477)
                      |+|+|++|+++ .++ .+..+++|++|++++|+++. +|..+..+++|++|++++|.++. +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            56777777776 334 36777777777777777763 45567777777777777777763 33 4677777777777777


Q ss_pred             CCCCcc-cccccCCCCccEEEccCCcCc
Q 038739           93 GYFGEL-PTSIRNLFSLEKLDLSFNNFS  119 (477)
Q Consensus        93 ~l~~~~-~~~l~~l~~L~~L~Ls~n~l~  119 (477)
                      ++.... ...+..+++|++|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            775432 245666777777777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=127.37  Aligned_cols=110  Identities=21%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739           30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE  109 (477)
Q Consensus        30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  109 (477)
                      |.++.++++|+|++|+|+.+ +..+..+++|++|++++|+++. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            45556666666666666643 4444556666666666666652 2 2355666666666666666544333445556666


Q ss_pred             EEEccCCcCcCCCC-ccccCCCCCCEEEccCCCC
Q 038739          110 KLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus       110 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~  142 (477)
                      +|++++|+++.... ..+..+++|++|++++|.+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCcc
Confidence            66666666552111 2344455555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.7e-14  Score=115.08  Aligned_cols=102  Identities=27%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739           37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN  116 (477)
Q Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  116 (477)
                      |+|++++|+++.. + .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            5677777777643 3 3677777777777777776 4566677777777777777777543 3 4677777777777777


Q ss_pred             cCcCCC-CccccCCCCCCEEEccCCCCc
Q 038739          117 NFSGEF-PWSTGNFSSLKLLDLRSCGFW  143 (477)
Q Consensus       117 ~l~~~~-~~~~~~l~~L~~L~L~~n~~~  143 (477)
                      +++... ...+..+++|++|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            776332 134556666666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.9e-15  Score=131.30  Aligned_cols=127  Identities=19%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             CCCEEEccCC--CCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739           11 KLLHLDLSLN--ELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD   88 (477)
Q Consensus        11 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   88 (477)
                      .++.++++..  .+. .++..+..+++|++|+|++|+|+.. + .+..+++|++|++++|.++ .++..+..+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3455555543  232 4455666777777777777777643 2 3666777777777777765 3444444445677777


Q ss_pred             CcCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCc
Q 038739           89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFW  143 (477)
Q Consensus        89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~  143 (477)
                      +++|+++..  +.+..+++|++|++++|+++.... ..+..+++|++|++++|++.
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777766532  235556667777777666653211 24555666666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=1.1e-15  Score=132.89  Aligned_cols=117  Identities=25%  Similarity=0.271  Sum_probs=96.2

Q ss_pred             CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739            2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL   81 (477)
Q Consensus         2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   81 (477)
                      +|.+++.+++|++|+|++|.|+. ++ .+..+++|++|++++|.++. ++..+..+++|++|++++|+++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            44678889999999999999984 44 58899999999999999984 454555567899999999999843  357788


Q ss_pred             CCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCC
Q 038739           82 GSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFP  123 (477)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~  123 (477)
                      ++|++|++++|+++.... ..+..+++|++|++++|++....+
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            999999999999965422 468999999999999999864433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.3e-12  Score=105.20  Aligned_cols=109  Identities=18%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccc-cCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCE
Q 038739            8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSAN-FLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV   86 (477)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   86 (477)
                      .+...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+++...+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3444556666666665 44555666666666666544 365555556666666666666666666555566666666666


Q ss_pred             EeCcCCCCCCcccccccCCCCccEEEccCCcC
Q 038739           87 LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF  118 (477)
Q Consensus        87 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  118 (477)
                      |+|++|+++...+..|.. .+|++|+|++|.+
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCcc
Confidence            666666665333333332 2466666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-11  Score=101.95  Aligned_cols=109  Identities=21%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             CCCCCCEEEcccccCCccccccCCCCCCCCEEecccC-cCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739           32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN-RFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK  110 (477)
Q Consensus        32 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  110 (477)
                      .+...+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+++...+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3444566777777666 34556677777777777655 366555566777777777777777776666667777777777


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEccCCCC
Q 038739          111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF  142 (477)
Q Consensus       111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~  142 (477)
                      |+|++|+++. +|........|++|+|++|.+
T Consensus        85 L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALES-LSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSC-CCSTTTCSCCCCEEECCSSCC
T ss_pred             eeccCCCCcc-cChhhhccccccccccCCCcc
Confidence            7777777773 333333334566777776665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.4e-09  Score=88.89  Aligned_cols=81  Identities=22%  Similarity=0.183  Sum_probs=35.6

Q ss_pred             CCCCCCEEeCcCCCCCCc--ccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCC-------ccc
Q 038739           80 NLGSLKVLDLSQNGYFGE--LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP-------HSI  150 (477)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-------~~l  150 (477)
                      .+++|++|++++|+++..  ++..+..+++|+.|++++|.++...+-.......|+.|++++|++.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            344555555555554332  12233444555555555555542211112223345555555555543322       123


Q ss_pred             cCCCCCcEEE
Q 038739          151 GNFTQLQYLH  160 (477)
Q Consensus       151 ~~l~~L~~L~  160 (477)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4556666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.5e-09  Score=88.80  Aligned_cols=66  Identities=30%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CCCCCCCEEecccCcCcccC--CcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC
Q 038739           55 GNLSSLKELDLSQNRFFGEL--PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG  120 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  120 (477)
                      ..+++|++|+|++|+++...  +..+..+++|++|++++|.+....+-.+....+|++|++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            44555555556555555321  2233445555555555555543322122233345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=9.7e-07  Score=73.04  Aligned_cols=86  Identities=19%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             CCCCCCEEEccCC-CCCCC----ccccccCCCCCCEEEcccccCCccc----cccCCCCCCCCEEecccCcCccc----C
Q 038739            8 NLSKLLHLDLSLN-ELQGE----LPVSVGNLHSLEELDLSANFLSSEW----PISIGNLSSLKELDLSQNRFFGE----L   74 (477)
Q Consensus         8 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~   74 (477)
                      +.++|++|+|+++ .++..    +...+...++|++|+|++|.+....    ...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455555555543 23321    1223444455555555555554221    12223344455555555544321    1


Q ss_pred             CcccCCCCCCCEEeCcCCC
Q 038739           75 PISMGNLGSLKVLDLSQNG   93 (477)
Q Consensus        75 ~~~~~~l~~L~~L~Ls~n~   93 (477)
                      ...+...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            1223344444555544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=9.5e-06  Score=66.83  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CCCCcEEECCCC-cCCCc----CCcCCCCCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCc
Q 038739          153 FTQLQYLHLGSN-NFSGD----LLGPIGNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYR  215 (477)
Q Consensus       153 l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  215 (477)
                      .++|++|+|+++ .++..    +...+...+.|++|++++|.+...    +...+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            345555555542 23321    112233344455555555544321    1223333444555555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.55  E-value=9.1e-06  Score=66.90  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=36.9

Q ss_pred             CCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc----ccccccCCCCccEEEcc--CCcCcC----
Q 038739           55 GNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE----LPTSIRNLFSLEKLDLS--FNNFSG----  120 (477)
Q Consensus        55 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls--~n~l~~----  120 (477)
                      ...++|++|++++|.+...    +...+...+.++.+++++|.+...    +...+...++|+.++|+  +|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3444555555555544321    112223344555555555554322    12334444555544332  333321    


Q ss_pred             CCCccccCCCCCCEEEccCC
Q 038739          121 EFPWSTGNFSSLKLLDLRSC  140 (477)
Q Consensus       121 ~~~~~~~~l~~L~~L~L~~n  140 (477)
                      .+...+...+.|++|+++.+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence            12223334555666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=0.00012  Score=59.91  Aligned_cols=18  Identities=17%  Similarity=0.178  Sum_probs=10.4

Q ss_pred             hhhhcCCCcCEEeccCCc
Q 038739          270 NFLQNQHHLRFMDLSDNR  287 (477)
Q Consensus       270 ~~l~~~~~L~~L~Ls~n~  287 (477)
                      ..+...++|+.|+++.+.
T Consensus       126 ~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEeCcCCC
Confidence            445556666666665543