Citrus Sinensis ID: 038754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEFE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccEEcc
Coil and Loop (DISEMBL)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDegrhgidpkiefe
Flexible Loop (DISEMBL)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVdegrhgidpkiefe
Low Complexity Region (SEG)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEFE
Disordered region (IsUnstruct)
***EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG***********
Disordered Region (DISOPRED)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI*****F*
Disordered Region (DISEMBL)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEFE
Disordered Region (DISPRO)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKI*F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGIDPKIEFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
B3DNN5	543	Anaphase-promoting comple	yes	no	0.962	0.139	0.763	1e-28
Q8R349	620	Cell division cycle prote	yes	no	0.759	0.096	0.4	3e-06
Q13042	620	Cell division cycle prote	yes	no	0.746	0.095	0.406	3e-06
Q1ZXE6	865	Anaphase-promoting comple	yes	no	0.746	0.068	0.45	6e-06

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 68/76 (89%)

Query: 3   HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62
            EAIS YERALTL  +SLSTY+GLAYTYHLQ NFSAAI+YYHKALWLKPDDQFCTEML++
Sbjct: 467 REAISYYERALTLSTKSLSTYSGLAYTYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNV 526

Query: 63  ALVDEGRHGIDPKIEF 78
           AL+DE ++G+D K+E 
Sbjct: 527 ALMDECQNGVDSKVEL 542

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML 
Sbjct: 461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 520

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct: 461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum GN=anapc6 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 5   AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64
           A+  Y  +L+LL  + STY+ L +T+HLQ NF  AI YYH++L ++ DD F   +L  AL
Sbjct: 799 ALHYYTMSLSLLPNNPSTYSALGFTHHLQGNFDEAIDYYHQSLSIR-DDTFTNVLLHKAL 857

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
224106275	116	predicted protein [Populus trichocarpa]	1.0	0.681	0.911	6e-34
225461701	545	PREDICTED: anaphase-promoting complex su	0.974	0.141	0.844	5e-31
147782707	79	hypothetical protein VITISV_026997 [Viti	0.974	0.974	0.831	1e-30
356517052	545	PREDICTED: anaphase-promoting complex su	0.987	0.143	0.756	2e-28
449523936	241	PREDICTED: anaphase-promoting complex su	0.974	0.319	0.779	9e-28
255565311	655	cell division cycle, putative [Ricinus c	0.848	0.102	0.895	9e-28
449457307	547	PREDICTED: anaphase-promoting complex su	0.974	0.140	0.779	1e-27
21553517	159	unknown [Arabidopsis thaliana]	0.949	0.471	0.773	4e-27
26451171	143	unknown protein [Arabidopsis thaliana]	0.949	0.524	0.773	5e-27
3834317	521	Similar to CDC16 protein gb|U18291 (CDC1	0.962	0.145	0.763	5e-27

>gi|224106275|ref|XP_002333705.1| predicted protein [Populus trichocarpa] gi|222838031|gb|EEE76396.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 73/79 (92%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           IYHEAIS YERALTL  RSLSTYAGLAYTYHLQDNF+AAIT YHKALWLKPDDQFCTEML
Sbjct: 38  IYHEAISYYERALTLSPRSLSTYAGLAYTYHLQDNFTAAITCYHKALWLKPDDQFCTEML 97

Query: 61  SLALVDEGRHGIDPKIEFE 79
           SLALVDEGR GIDPKIEF 
Sbjct: 98  SLALVDEGRRGIDPKIEFR 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461701|ref|XP_002283201.1| PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera] gi|302142883|emb|CBI20178.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           +YHEAIS YE+ALTL  RSLSTYAGLAYTYHLQDNF AAITYYHKALWLKPDDQFCTEML
Sbjct: 467 MYHEAISFYEKALTLSTRSLSTYAGLAYTYHLQDNFPAAITYYHKALWLKPDDQFCTEML 526

Query: 61  SLALVDEGRHGIDPKIE 77
           +LALVDE R G+DP+ E
Sbjct: 527 TLALVDEARRGLDPRNE 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782707|emb|CAN63864.1| hypothetical protein VITISV_026997 [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 70/77 (90%)

Query: 1  IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
          +YHEAIS Y++ALTL  RSLSTYAGLAYTYHLQDNF AAITYYHKALWLKPDDQFCTEML
Sbjct: 1  MYHEAISFYDKALTLSTRSLSTYAGLAYTYHLQDNFPAAITYYHKALWLKPDDQFCTEML 60

Query: 61 SLALVDEGRHGIDPKIE 77
          +LALVDE R G+DP+ E
Sbjct: 61 TLALVDEARRGLDPRNE 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517052|ref|XP_003527204.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 67/78 (85%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           +Y EAIS YE+AL L  RS+STYAGLAYTYHLQD+F+ AI YYHKALWLKPDDQFCTEML
Sbjct: 467 MYREAISYYEKALALSTRSVSTYAGLAYTYHLQDDFTTAIAYYHKALWLKPDDQFCTEML 526

Query: 61  SLALVDEGRHGIDPKIEF 78
           S AL+DE R G+DP +EF
Sbjct: 527 SWALIDESRRGVDPSLEF 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523936|ref|XP_004168979.1| PREDICTED: anaphase-promoting complex subunit 6-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 69/77 (89%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           +Y EAI  YE+AL L  RSLSTYAGLAYT HLQD+F+AAITYYHKALWLKPDDQFCTEML
Sbjct: 163 MYREAIKYYEKALALSTRSLSTYAGLAYTCHLQDHFTAAITYYHKALWLKPDDQFCTEML 222

Query: 61  SLALVDEGRHGIDPKIE 77
           SLAL+DE ++G+DPK+E
Sbjct: 223 SLALMDECQNGMDPKVE 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565311|ref|XP_002523647.1| cell division cycle, putative [Ricinus communis] gi|223537099|gb|EEF38733.1| cell division cycle, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 63/67 (94%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           +YHEAISCYERAL    RSLSTYAGLAYTYHLQDNF+AAIT+YHKALWLKPDDQFCTEML
Sbjct: 466 MYHEAISCYERALAFSTRSLSTYAGLAYTYHLQDNFTAAITHYHKALWLKPDDQFCTEML 525

Query: 61  SLALVDE 67
           SLALVDE
Sbjct: 526 SLALVDE 532

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457307|ref|XP_004146390.1| PREDICTED: anaphase-promoting complex subunit 6-like [Cucumis sativus]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 69/77 (89%)

Query: 1   IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
           +Y EAI  YE+AL L  RSLSTYAGLAYT HLQD+F+AAITYYHKALWLKPDDQFCTEML
Sbjct: 469 MYREAIKYYEKALALSTRSLSTYAGLAYTCHLQDHFTAAITYYHKALWLKPDDQFCTEML 528

Query: 61  SLALVDEGRHGIDPKIE 77
           SLAL+DE ++G+DPK+E
Sbjct: 529 SLALMDECQNGMDPKVE 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553517|gb|AAM62610.1| unknown [Arabidopsis thaliana]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 68/75 (90%)

Query: 4   EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
           EAIS YERALTL  +SLSTY+GLAYTYHLQ NFSAAI+YYHKALWLKPDDQFCTEML++A
Sbjct: 84  EAISYYERALTLSTKSLSTYSGLAYTYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNVA 143

Query: 64  LVDEGRHGIDPKIEF 78
           L+DE ++G+D K+E 
Sbjct: 144 LMDECQNGVDSKVEL 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451171|dbj|BAC42689.1| unknown protein [Arabidopsis thaliana]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 68/75 (90%)

Query: 4   EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
           EAIS YERALTL  +SLSTY+GLAYTYHLQ NFSAAI+YYHKALWLKPDDQFCTEML++A
Sbjct: 68  EAISYYERALTLSTKSLSTYSGLAYTYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNVA 127

Query: 64  LVDEGRHGIDPKIEF 78
           L+DE ++G+D K+E 
Sbjct: 128 LMDECQNGVDSKVEL 142

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3834317|gb|AAC83033.1| Similar to CDC16 protein gb|U18291 (CDC16Hs) from Homo sapiens [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 68/76 (89%)

Query: 3   HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL 62
            EAIS YERALTL  +SLSTY+GLAYTYHLQ NFSAAI+YYHKALWLKPDDQFCTEML++
Sbjct: 445 REAISYYERALTLSTKSLSTYSGLAYTYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNV 504

Query: 63  ALVDEGRHGIDPKIEF 78
           AL+DE ++G+D K+E 
Sbjct: 505 ALMDECQNGVDSKVEL 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:2037523	543	APC6 "anaphase promoting compl	0.936	0.136	0.783	1.8e-27
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.746	0.094	0.423	1e-07
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.746	0.095	0.406	2.1e-07
UNIPROTKB|Q7Z651	526	CDC16 "CDC16 cell division cyc	0.746	0.112	0.406	3.5e-07
DICTYBASE|DDB_G0286233	865	anapc6 "anaphase promoting com	0.746	0.068	0.45	4.2e-07
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.746	0.095	0.406	4.4e-07
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.746	0.095	0.406	4.4e-07
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.746	0.095	0.406	4.4e-07
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.746	0.095	0.406	4.4e-07
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.746	0.095	0.406	4.4e-07

TAIR|locus:2037523 APC6 "anaphase promoting complex 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 58/74 (78%), Positives = 68/74 (91%)

Query:     4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
             EAIS YERALTL  +SLSTY+GLAYTYHLQ NFSAAI+YYHKALWLKPDDQFCTEML++A
Sbjct:   468 EAISYYERALTLSTKSLSTYSGLAYTYHLQGNFSAAISYYHKALWLKPDDQFCTEMLNVA 527

Query:    64 LVDEGRHGIDPKIE 77
             L+DE ++G+D K+E
Sbjct:   528 LMDECQNGVDSKVE 541

GO:0005634 "nucleus" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF +AI Y+H AL L+ DD F   ML
Sbjct:   462 YEEALEYHRQALVLIPQNASTYSAIGYIHSLMGNFESAIDYFHTALGLRRDDTFSVTML 520

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y +A+  + +AL L+ ++ STY+ + Y + L+ +F +AI Y+H AL LK DD F   ML
Sbjct:   462 YEQALEYHRQALVLIPQNASTYSAIGYVHSLKGDFESAIDYFHTALGLKRDDTFSVTML 520

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q7Z651 CDC16 "CDC16 cell division cycle 16 homolog (S. cerevisiae), isoform CRA_h" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   367 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 425

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0286233 anapc6 "anaphase promoting complex subunit 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%)

Query:     5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64
             A+  Y  +L+LL  + STY+ L +T+HLQ NF  AI YYH++L ++ DD F   +L  AL
Sbjct:   799 ALHYYTMSLSLLPNNPSTYSALGFTHHLQGNFDEAIDYYHQSLSIR-DDTFTNVLLHKAL 857

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007088 "regulation of mitosis" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query:     2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML 60
             Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML
Sbjct:   461 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 519

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3DNN5	CDC16_ARATH	No assigned EC number	0.7631	0.9620	0.1399	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.709.4.1 hypothetical protein (114 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	79
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	8e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.4 bits (95), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 4  EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
          EA+  YE+AL L   +   Y  LA  Y+    +  A+  Y KAL L PD+      L LA
Sbjct: 18 EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77

Query: 64 LVDEGRH 70
              G++
Sbjct: 78 YYKLGKY 84

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.7 bits (88), Expect = 3e-05
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTY-HLQDNFSAAITYYHKAL 47
          Y EAI  YE+AL L   +   Y  LA  Y  L  ++  A+    KAL
Sbjct: 19 YDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 2  YHEAISCYERALTLLNR-------SLSTYAGLAYTYHLQDNFSAAITYYHKAL 47
          Y EA+   E+AL L          +      LA  Y    ++  A+ Y  KAL
Sbjct: 21 YDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKAL 73

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y EA+  YE+AL L   +   Y  L   Y+    +  A+  Y KAL L P+
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 5   AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL 64
           A+S +++ L L   S      LA  Y +  N++ AIT   +AL LKPD+      L+  L
Sbjct: 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679

Query: 65  VDEGR 69
           +   R
Sbjct: 680 LAAKR 684

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 33.2 bits (77), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              L   Y     +  A+ YY KAL L P++
Sbjct: 3  ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.53
PRK15359	144	type III secretion system chaperone protein SscB;	99.53
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.48
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.46
PF13371	73	TPR_9: Tetratricopeptide repeat	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.36
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
PRK11189	296	lipoprotein NlpI; Provisional	99.33
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
KOG1126	638	consensus DNA-binding cell division cycle control	99.23
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.2
PRK12370	553	invasion protein regulator; Provisional	99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.16
PF13428	44	TPR_14: Tetratricopeptide repeat	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.15
PRK12370	553	invasion protein regulator; Provisional	99.13
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	99.12
PF13431	34	TPR_17: Tetratricopeptide repeat	99.11
PRK11189	296	lipoprotein NlpI; Provisional	99.09
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.09
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.06
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.01
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.0
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.99
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.99
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.98
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.94
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
KOG1126	638	consensus DNA-binding cell division cycle control	98.91
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.89
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.85
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.83
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.83
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.81
PRK15331	165	chaperone protein SicA; Provisional	98.81
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.81
PLN02789	320	farnesyltranstransferase	98.8
PLN02789	320	farnesyltranstransferase	98.8
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.77
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.76
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.73
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.71
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.7
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.65
PRK15331	165	chaperone protein SicA; Provisional	98.64
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.62
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.6
PF12688	120	TPR_5: Tetratrico peptide repeat	98.59
KOG2076	895	consensus RNA polymerase III transcription factor	98.58
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.57
KOG4234	271	consensus TPR repeat-containing protein [General f	98.57
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.54
PRK11906	458	transcriptional regulator; Provisional	98.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.53
KOG2076	895	consensus RNA polymerase III transcription factor	98.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.51
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.5
PRK10803	263	tol-pal system protein YbgF; Provisional	98.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.49
PF13512	142	TPR_18: Tetratricopeptide repeat	98.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.48
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.45
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	98.44
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.44
KOG4555	175	consensus TPR repeat-containing protein [Function	98.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.39
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.38
PRK11906	458	transcriptional regulator; Provisional	98.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.35
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	98.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.31
PRK14574	822	hmsH outer membrane protein; Provisional	98.31
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.31
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.3
PRK14574	822	hmsH outer membrane protein; Provisional	98.28
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.27
PRK10941	269	hypothetical protein; Provisional	98.27
KOG2003	840	consensus TPR repeat-containing protein [General f	98.25
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.24
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.24
KOG4234	271	consensus TPR repeat-containing protein [General f	98.21
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.2
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.16
PF13371	73	TPR_9: Tetratricopeptide repeat	98.16
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.15
PF13512	142	TPR_18: Tetratricopeptide repeat	98.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.09
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.08
PF13428	44	TPR_14: Tetratricopeptide repeat	98.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.03
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.01
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.99
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.99
PF13431	34	TPR_17: Tetratricopeptide repeat	97.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.98
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.97
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.95
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.92
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.9
KOG3364	149	consensus Membrane protein involved in organellar	97.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.87
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.87
KOG1129	478	consensus TPR repeat-containing protein [General f	97.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.86
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	97.85
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.79
KOG2003	840	consensus TPR repeat-containing protein [General f	97.78
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.75
KOG1129	478	consensus TPR repeat-containing protein [General f	97.74
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.72
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.68
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.66
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.66
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.66
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.63
PF12688	120	TPR_5: Tetratrico peptide repeat	97.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.55
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.5
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.49
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	97.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.36
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.27
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.26
COG2912	269	Uncharacterized conserved protein [Function unknow	97.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.25
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	97.16
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.16
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	97.11
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.1
KOG2471	696	consensus TPR repeat-containing protein [General f	97.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.07
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.98
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.97
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.95
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.94
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.89
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.85
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.84
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.75
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.74
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	96.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.6
COG4455	273	ImpE Protein of avirulence locus involved in tempe	96.53
KOG4555	175	consensus TPR repeat-containing protein [Function	96.52
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.48
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.45
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.41
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.4
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.39
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	96.36
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.32
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.3
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.24
KOG1310	758	consensus WD40 repeat protein [General function pr	96.23
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.18
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.18
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.1
PLN03077	857	Protein ECB2; Provisional	96.06
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	95.99
PLN03218	1060	maturation of RBCL 1; Provisional	95.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.93
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.7
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.68
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.63
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	95.51
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.47
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.46
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.45
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	95.39
PF04212	69	MIT: MIT (microtubule interacting and transport) d	95.33
PLN03218	1060	maturation of RBCL 1; Provisional	95.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.21
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.17
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.11
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.07
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.07
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	95.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.95
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.91
PLN03077	857	Protein ECB2; Provisional	94.88
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.86
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.86
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.85
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.82
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.74
PRK10941	269	hypothetical protein; Provisional	94.67
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	94.6
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.56
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.51
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	94.5
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.48
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.46
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	94.32
COG3947	361	Response regulator containing CheY-like receiver a	94.26
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.15
PF12854	34	PPR_1: PPR repeat	94.13
KOG1310	758	consensus WD40 repeat protein [General function pr	94.09
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.04
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.03
PRK04841	903	transcriptional regulator MalT; Provisional	94.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.02
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.96
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.69
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	93.63
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	93.5
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.46
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.46
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	93.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.25
PRK04841	903	transcriptional regulator MalT; Provisional	93.16
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.09
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.99
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	92.97
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	92.77
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	92.42
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.33
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	92.31
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.19
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	92.13
cd02656	75	MIT MIT: domain contained within Microtubule Inter	91.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.76
PF14852	35	Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repe	91.5
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	91.44
COG4259	121	Uncharacterized protein conserved in bacteria [Fun	91.42
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.37
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	91.34
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.31
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.29
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.03
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.87
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.87
PF13041	50	PPR_2: PPR repeat family	90.76
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.7
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.69
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.58
KOG2997	366	consensus F-box protein FBX9 [General function pre	90.57
COG3947	361	Response regulator containing CheY-like receiver a	90.5
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.17
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.07
PF12753	404	Nro1: Nuclear pore complex subunit Nro1; InterPro:	89.94
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.83
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.08
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	88.94
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.9
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.83
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	86.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.56
PF15297	353	CKAP2_C: Cytoskeleton-associated protein 2 C-termi	86.45
PF13812	34	PPR_3: Pentatricopeptide repeat domain	86.35
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.24
COG2015	655	Alkyl sulfatase and related hydrolases [Secondary	85.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	85.89
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.47
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	85.26
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.01
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	84.76
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.52
TIGR00985	148	3a0801s04tom mitochondrial import receptor subunit	84.43
KOG1586	288	consensus Protein required for fusion of vesicles	84.21
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	84.14
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.65
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.53
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	82.4
KOG1586	288	consensus Protein required for fusion of vesicles	82.14
KOG2047	835	consensus mRNA splicing factor [RNA processing and	81.82
KOG1585	308	consensus Protein required for fusion of vesicles	81.81
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	81.18
PF13830	324	DUF4192: Domain of unknown function (DUF4192)	80.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.15
COG4941	415	Predicted RNA polymerase sigma factor containing a	80.11

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.56  E-value=2.2e-14  Score=68.03  Aligned_cols=54  Identities=31%  Similarity=0.465  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus        12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            478999999999999999999999999999999999999999999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.53  E-value=3.1e-14  Score=68.16  Aligned_cols=51  Identities=33%  Similarity=0.518  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p   51 (79)
                      ++++|+.+|+++++.+|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus        18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4789999999999999999999999999999999 79999999999999998

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.53  E-value=1.7e-13  Score=74.19  Aligned_cols=68  Identities=21%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+..|++++.++|.++.+|+++|.++...|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            55666666666666666666666666666666666666666666666666666666666666655544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=5.7e-13  Score=72.19  Aligned_cols=67  Identities=18%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+....
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999998888887776654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.48  E-value=3.3e-13  Score=64.34  Aligned_cols=62  Identities=26%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      ++++|+..|++++..+|+++.+++.+|.+|.++|++++|...+++++..+|+++.++..++.
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            47899999999999999999999999999999999999999999999999998877766554

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.46  E-value=1.1e-12  Score=71.71  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|...|+-+...+|.++..|+++|.|+..+|++.+|+.+|.+++.++|++|.+..+.+.++...|+..
T Consensus        50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363         50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC  120 (157)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence            57899999999999999999999999999999999999999999999999999999999998888776643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.45  E-value=1.5e-12  Score=62.78  Aligned_cols=60  Identities=27%  Similarity=0.284  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+.++++++.++|+++..|+.+|.++..+|++.+|+..++++++..|+++.+....
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999998665443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=7.3e-12  Score=74.05  Aligned_cols=70  Identities=27%  Similarity=0.361  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++.|+..++.++.++|++..+|..+|.+|.-+|++.+|+..|+++|.++|++..++.+|..+-....+..
T Consensus       131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            4567777777777777777777777777777777777777777777777777777777766665554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.35  E-value=2.1e-11  Score=74.33  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+..++..+....
T Consensus        52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            455666666666666666666666666666666666666666666666666665555555554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=7.4e-12  Score=74.02  Aligned_cols=69  Identities=25%  Similarity=0.312  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|.+|+..|.++|+++|.++-.|.+.+.+|.++|.++.|++.++.++.+||....++..++.++...|+
T Consensus        96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            589999999999999999999999999999999999999999999999999999999999999887754

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=3e-11  Score=71.99  Aligned_cols=67  Identities=24%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..++.+++.++...|
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  146 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG  146 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            5677778888888888888888888888888888888888888888888888777777776665443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=5.9e-11  Score=63.03  Aligned_cols=69  Identities=23%  Similarity=0.242  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..+++++..+|.++.++..+|.++..+|++++|+.+|++++.++|+++..+..++.++...++
T Consensus        32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence            367788888888888888888888888888888888888888888888888887777777766665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.27  E-value=9.9e-11  Score=71.42  Aligned_cols=69  Identities=22%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.++..++.++...|+
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            588999999999999999999999999999999999999999999999999999999888888877665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=1.4e-10  Score=65.85  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL-VDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~   68 (79)
                      .++++..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++..+..++.++ ...|
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g  122 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG  122 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            467788899999999999999999999999999999999999999999999998888888865 4434

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=2.1e-11  Score=77.77  Aligned_cols=70  Identities=19%  Similarity=0.276  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|..+|+.++..+|++..+||.+|.+|.++++++.|.-.|++|+.++|.+......++..+...++.
T Consensus       470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence            3789999999999999999999999999999999999999999999999999987777777777665544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.20  E-value=4.4e-11  Score=76.93  Aligned_cols=68  Identities=26%  Similarity=0.399  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+.+|.+++++.|..++++.++|..|..+|+.+.|+.+|.+|+.++|....+..+++.+.++.|.
T Consensus       404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn  471 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN  471 (966)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence            45666666666666666666666666666666666666666666666666666666666666665544

>PRK12370 invasion protein regulator; Provisional

Probab=99.19  E-value=2.6e-10  Score=72.82  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  385 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA  385 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            45555555555555555555555555555555555555555555555555555555454444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=4.8e-10  Score=59.50  Aligned_cols=63  Identities=21%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++++|+.+++++++.+|+++..++.+|.++...|++++|+..|+++++++|++.........+
T Consensus        66 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        66 EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999998655444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.17  E-value=5.1e-10  Score=72.07  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..++..++.++...
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence            556666666666666666666666666666666666666666666666666666655555555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2.3e-10  Score=71.35  Aligned_cols=65  Identities=28%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+|+++++++|+...+|..+|.=|..+.+...|+..|++|++++|.|..+|-.++.++.-
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            56777888888888888888888888888888888888888888888888777777777777654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=99.16  E-value=1.6e-10  Score=50.96  Aligned_cols=43  Identities=26%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      |.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4688999999999999999999999999999999999887764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=8.4e-10  Score=62.66  Aligned_cols=66  Identities=23%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTY-HLQDN--FSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..|+++++++|+++.++..+|.++ ...|+  +.+|...++++++++|+++.++..++......
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~  157 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ  157 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence            45566666666666666666666666553 44454  35566666666666666655555555444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.15  E-value=4.2e-10  Score=72.59  Aligned_cols=70  Identities=27%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++-|+..|+++++++|+.+.++.++|.++...|+..+|..+|.++|.+.|.++.++.+++.++...+..+
T Consensus       302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence            4557777777777777777777777777777777777777777777777777777777777776665544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.15  E-value=1.3e-09  Score=52.98  Aligned_cols=69  Identities=35%  Similarity=0.453  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++..|.++.+++.+|.++...+++++|+.++++++.+.|.+...+..++.++...++
T Consensus        15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189          15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            478899999999999999999999999999999999999999999999999998777777766665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.15  E-value=1.4e-10  Score=57.47  Aligned_cols=68  Identities=29%  Similarity=0.391  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|.  +...++.+|.||+++|++++|+..+++ .+.+|.+......++.++...++
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            478999999999999995  567788899999999999999999999 88999888777778888877665

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=9e-10  Score=70.40  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+.
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence            478999999999999999999999999999999999999999999999999987544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=99.12  E-value=1.8e-10  Score=47.99  Aligned_cols=34  Identities=32%  Similarity=0.658  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=99.11  E-value=1.3e-10  Score=48.67  Aligned_cols=33  Identities=33%  Similarity=0.611  Sum_probs=31.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038754            8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAI   40 (79)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~   40 (79)
                      +|+++++++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478999999999999999999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.09  E-value=2e-09  Score=64.23  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF   55 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   55 (79)
                      ++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.
T Consensus       113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            5789999999999999999999999999999999999999999999999999973

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.09  E-value=1.7e-09  Score=72.96  Aligned_cols=68  Identities=19%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+.+|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.++.+++.++...|+
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            56677777777777777777777777777777777777777777777777777666666666665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.09  E-value=1.9e-09  Score=69.50  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|++..++.++|.++..+|++++|+..|++++++.|+++.++..++.++...|+
T Consensus       414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  482 (615)
T TIGR00990       414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK  482 (615)
T ss_pred             CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            578999999999999999999999999999999999999999999999999999888888888877654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=99.09  E-value=5.2e-10  Score=46.40  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +.+|+.+|.++..+|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=3.4e-09  Score=58.48  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..|++++.+.|++   +.++.++|.++...|++++|+..|++++.++|.+...+..++.++...+
T Consensus        50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            4789999999999997763   4599999999999999999999999999999999988878877777544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.5e-09  Score=68.87  Aligned_cols=66  Identities=48%  Similarity=0.734  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++.+|+.++++++.+.|.++.++..+|.+|..+|+++.|+..|.++|.++|++.++...++.++..
T Consensus       470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            378999999999999999999999999999999999999999999999999999999999988877

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.08  E-value=1.8e-09  Score=70.68  Aligned_cols=70  Identities=10%  Similarity=-0.089  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+..+++++..+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..++.++...|+.
T Consensus       135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~  204 (694)
T PRK15179        135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL  204 (694)
T ss_pred             cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            4678888888888888888888888888888888888888888888888888888888888888877654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.1e-09  Score=65.92  Aligned_cols=66  Identities=20%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +|..|+..+.++++++|+++.++|..|.++..+|+++.|+..|+++++++|+|..+...+..+...
T Consensus       272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999777666555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=9.1e-10  Score=52.45  Aligned_cols=50  Identities=28%  Similarity=0.454  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++..|..+|.++...|++++|+.+|+++++++|+++.++.+++.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999999999988876

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.06  E-value=3.8e-09  Score=58.57  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++..|+.   +.++.++|.++...|++++|+.+|++++.++|++...+..++.++...++
T Consensus        50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            5789999999999988764   57999999999999999999999999999999999888888888776654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.06  E-value=5.7e-09  Score=53.86  Aligned_cols=69  Identities=19%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD---QFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..|++++..+|++   +.++..++.++...++
T Consensus        17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence            4788999999999999876   5789999999999999999999999999999986   3556666666665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.06  E-value=3.2e-09  Score=58.22  Aligned_cols=64  Identities=22%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK---PDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~   64 (79)
                      +|++|+.+|.+++.++|++|.++++.|.|+...|+...|...|+.++..-   |.+..........+
T Consensus        84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999886   44444443333333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.05  E-value=6e-09  Score=58.49  Aligned_cols=68  Identities=21%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..++++++.+|.+..++..+|.++..+|++++|+..|++++.++|++..++..++.++...|
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g  113 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG  113 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            46889999999999999999999999999999999999999999999999998877766666655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.01  E-value=3.2e-09  Score=61.92  Aligned_cols=68  Identities=24%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++..|+..++++.++.|+++.+|+.+|.+|.+.|++++|...|.+++++.|+++.+..+++-.+.-.|
T Consensus       115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            47889999999999999999999999999999999999999999999999999988777765544333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.00  E-value=6.7e-09  Score=67.66  Aligned_cols=69  Identities=7%  Similarity=-0.043  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.++..++.++...|+
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~  159 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK  159 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            478899999999999999999999999999999999999999999999999999888888777766554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.5e-09  Score=66.22  Aligned_cols=69  Identities=30%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ...|+..|+++++++|.|..+|+.+|.+|--++.+-=|+-+|++|+.+.|.|+..|..+++++...++.
T Consensus       380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            356888888888888888888888888888888888888888888888888888888888888766543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.5e-09  Score=65.87  Aligned_cols=66  Identities=21%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +|+.|+..|.++++.+|+++.+|.|+|.||.++|.+..|+...+.+++++|++..++..-+.++..
T Consensus       373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~  438 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA  438 (539)
T ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999998666555555443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.99  E-value=5.7e-09  Score=58.28  Aligned_cols=66  Identities=24%  Similarity=0.324  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+.-|++++.++|+...+++++|.+|..++.           |+.|..+|++|+..+|++...+..+.-+.+.+
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap  127 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAP  127 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhH
Confidence            5789999999999999999999999999987765           78899999999999999998877776655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.98  E-value=9e-09  Score=69.56  Aligned_cols=68  Identities=26%  Similarity=0.330  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++++|+ +.++.++|.++.++|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus       591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~  658 (987)
T PRK09782        591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD  658 (987)
T ss_pred             CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            578999999999999996 99999999999999999999999999999999999999999988877655

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.97  E-value=8.2e-09  Score=59.63  Aligned_cols=64  Identities=23%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++..|..-++++++.+|++..+|..++.+|.+.|+.+.|.+.|++|++++|++..+.++++.-+
T Consensus        50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            4567888899999999999999999999999999999999999999999998876666555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.96  E-value=1.5e-08  Score=59.82  Aligned_cols=68  Identities=13%  Similarity=0.086  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~   68 (79)
                      +|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|+++++..|+++   .++..++.++...+
T Consensus       158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            5789999999999999998   58999999999999999999999999999999875   44444555555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.95  E-value=5e-09  Score=65.34  Aligned_cols=49  Identities=20%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTLLNRSLST---YAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +|++|+.+|+++++++|++..+   |+++|.+|..+|++++|+.++++++.+
T Consensus        90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5889999999999999999854   999999999999999999999999997

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=1.6e-09  Score=68.68  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +|++|+.||+.++..+|.+...|+.+|-.+.-..+..+|+..|++|+++.|+...++.+++-.....
T Consensus       445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL  511 (579)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence            4789999999999999999999999999999999999999999999999999987666665554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.94  E-value=1.6e-08  Score=65.94  Aligned_cols=66  Identities=20%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|+..|+++++++|+++.++..+|.++..+|++++|+..+++++.++|+++.++..++.++...|+
T Consensus       268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~  333 (656)
T PRK15174        268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ  333 (656)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            367777777777777777777777777777777777777777777777777766666666655443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=2e-08  Score=62.87  Aligned_cols=70  Identities=24%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +.++|.+.+++++.++|+.+-.+.++|.+|.+.|++.+|+..++..+..+|+++..|..++.++...|..
T Consensus       355 k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         355 KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            4578999999999999999999999999999999999999999999999999999999999999887764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=1.8e-08  Score=66.03  Aligned_cols=71  Identities=7%  Similarity=-0.055  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|..+++.++++.|++..++.+++.++.+.+++++|+.++++++..+|+++.+...++.++...|+.+
T Consensus       101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~  171 (694)
T PRK15179        101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE  171 (694)
T ss_pred             CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence            47899999999999999999999999999999999999999999999999999999999999998887654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=1.2e-09  Score=70.06  Aligned_cols=67  Identities=24%  Similarity=0.296  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++.|+.+|.+++.++|++..+|..+|.=+..+.+++.|+.+|++|+.++|+|..+|..++-++..++
T Consensus       437 h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe  503 (638)
T KOG1126|consen  437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE  503 (638)
T ss_pred             HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence            5566666666666666666666666666666666666666666666666666666666665555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=8.9e-09  Score=64.84  Aligned_cols=68  Identities=28%  Similarity=0.258  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +|++|+.+|..++++.|+.|-.|.|++-||...|++++.++...++|+++|+...+....+.+....|
T Consensus       130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence            48999999999999999999999999999999999999999999999999999866666555555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.89  E-value=1.3e-08  Score=63.48  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHHhhhc
Q 038754           15 LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF---CTEMLSLALVDEGRH   70 (79)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~   70 (79)
                      .+|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..   ++.+++.++...|+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH
Confidence            56889999999999999999999999999999999999985   488888888877653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=4.8e-08  Score=58.08  Aligned_cols=70  Identities=21%  Similarity=0.133  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      +..+.-++.-+..+|+|..-|..+|.+|..+|++..|...|.+++++.|+++..+..++.++-..+...+
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~  208 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQM  208 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcc
Confidence            4556678888999999999999999999999999999999999999999999999999988877665444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.86  E-value=4.1e-08  Score=67.23  Aligned_cols=65  Identities=22%  Similarity=0.252  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+..|+++++++|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+..++.
T Consensus       366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999987776666543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.85  E-value=2.5e-08  Score=58.86  Aligned_cols=69  Identities=32%  Similarity=0.341  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++++...+.++....  +.++..|..+|.++.+.|++++|+.+|+++++++|+++.+...+...+...|+
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~  195 (280)
T PF13429_consen  125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD  195 (280)
T ss_dssp             -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence            3567788888876655  67899999999999999999999999999999999999888777777665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.83  E-value=1.1e-07  Score=53.40  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      +++|...+.++++.+|.++.++..+|.++...|++++|+..+++++.+.|.++..+..+..+
T Consensus       151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666665555554443333333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.83  E-value=8.5e-09  Score=60.82  Aligned_cols=71  Identities=28%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID   73 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~   73 (79)
                      +++...+....+..|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...+++++...|+...-
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence            34445555555555666777888888889999999999999999999999999999999999988876543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.83  E-value=5.3e-08  Score=55.98  Aligned_cols=65  Identities=23%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF---CTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~   65 (79)
                      ++++|+..++++++.+|+++   .+++.+|.++...|++++|+..|+++++.+|+++.   ++..++.++.
T Consensus        48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            47899999999999999876   68899999999999999999999999999998874   4444555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.81  E-value=6.9e-08  Score=49.76  Aligned_cols=58  Identities=10%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      ++++|+.+|+.++...|++   +.+++.+|.++...|++.+|+..+++++...|+++.+..
T Consensus        54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            4789999999999999885   678999999999999999999999999999999886543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.81  E-value=3.6e-08  Score=54.44  Aligned_cols=66  Identities=18%  Similarity=0.059  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++++|...|+-+...+|.++.-|+.+|.|+..+++|+.|+..|-.+..++++||......+.++..
T Consensus        52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            456677777777777777777777777777777777777777777777766666444444444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.81  E-value=6.9e-08  Score=62.91  Aligned_cols=68  Identities=24%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..+++++...|++......++.++...|
T Consensus        37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  104 (899)
T TIGR02917        37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG  104 (899)
T ss_pred             ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCC
Confidence            57899999999999999999999999999999999999999999999999988877666666665544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=98.80  E-value=6.7e-08  Score=58.51  Aligned_cols=67  Identities=7%  Similarity=0.005  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+..+.++++++|++..+|...|.++..+| ++++++.+++++++.+|++..++...+.++...+
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            567888888888888888888888888888887 5688888888888888888877777666665544

>PLN02789 farnesyltranstransferase

Probab=98.80  E-value=8.5e-08  Score=58.08  Aligned_cols=65  Identities=8%  Similarity=0.159  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++.++.++++.+|++..+|...|.++..+|++++|+.++.++++++|+|..++.....++...
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            56788889999999999999999999999999999999999999999999998888877776654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.78  E-value=1.9e-08  Score=41.62  Aligned_cols=33  Identities=33%  Similarity=0.649  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      .+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999953

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.77  E-value=1.1e-07  Score=65.14  Aligned_cols=68  Identities=24%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|+++++.+|+++.++.++|.+|...|++++|+..|++++...|+++.++..++.++...|
T Consensus       618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g  685 (1157)
T PRK11447        618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG  685 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence            47889999999999999999999999999999999999999999999999998877776666665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=4.6e-08  Score=63.75  Aligned_cols=71  Identities=25%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +|.++...++..++++|-....|+++|.|..+.+++..|..+|..++.++|++..+|+++..++...+++.
T Consensus       500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~  570 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK  570 (777)
T ss_pred             hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence            47899999999999999999999999999999999999999999999999999999999999988877653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=3.9e-08  Score=62.05  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      .+....|.++.+++|.++++|+..|.+++-++++++|+..|++++.++|.+..++..+..+.=
T Consensus       377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY  439 (606)
T ss_pred             HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence            456678999999999999999999999999999999999999999999999866655554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.76  E-value=1.6e-07  Score=62.17  Aligned_cols=65  Identities=12%  Similarity=-0.118  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++......+.+..
T Consensus       374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999755544444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.76  E-value=1.7e-07  Score=61.15  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.++...++
T Consensus       751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence            356777778888888888888888888888888888888888888888888888777777666655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=2.4e-07  Score=51.36  Aligned_cols=54  Identities=28%  Similarity=0.488  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN--------------FSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+++++++..|+++.++..+|.++...|+              +.+|+.++++++.++|++.
T Consensus        87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            47899999999999999999999999999999988              6889999999999999874

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.75  E-value=7.8e-08  Score=61.41  Aligned_cols=54  Identities=26%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF   55 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   55 (79)
                      ++++|...+++++.++| ++.+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            57899999999999999 5899999999999999999999999999999999883

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.74  E-value=1.8e-07  Score=61.95  Aligned_cols=63  Identities=21%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +++|+..++++++..|+++. +..+|.++...|++.+|+..|+++++++|+++.++..++.++.
T Consensus        99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049         99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45566666666666666666 6666666666666666666666666666666655555555544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.73  E-value=9.8e-08  Score=64.20  Aligned_cols=66  Identities=18%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +|+++++...++++.+|++..++..+|.++..++. .++|...|-.+.+++|++..+|..+...+..
T Consensus        17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen   17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            58999999999999999999999999999999999 9999999999999999999999999998876

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.72  E-value=1.3e-07  Score=57.99  Aligned_cols=70  Identities=24%  Similarity=0.235  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +.+|+..+.+++..+|++..++...+.+|.....|+.||..|++|+..+++|..+...+..+..-..+.+
T Consensus       323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999999999888776554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.71  E-value=2.6e-08  Score=48.44  Aligned_cols=50  Identities=32%  Similarity=0.504  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            1 IYHEAISCYERALTLL---N-R---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ++++|+.+|++++++.   + +   -..++.++|.++..+|++++|+.++++++++.
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5789999999999762   2 2   26789999999999999999999999999863

...

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.70  E-value=4e-07  Score=41.61  Aligned_cols=47  Identities=17%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++.+|..++++|+|..|..+.+.+|+++|+|..+.......-...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999998876554444433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.70  E-value=1.5e-07  Score=61.66  Aligned_cols=69  Identities=20%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT--YYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +.+|...|..++.++|+++.....+|.++...|+..-|..  ....++++||.++.+|..++.++...|+.
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence            5688888999999999999999999999999998888888  88999999999999999999888887764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.69  E-value=1.5e-07  Score=54.58  Aligned_cols=64  Identities=19%  Similarity=0.104  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--KPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~   65 (79)
                      .+.|.+.|++++.++|++.++++|+|..+..+|++++|+.+|++|+..  .|..+..+.+++-+-.
T Consensus        85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063          85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence            355677777777777777777777777777777777777777777764  2333444555544444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.69  E-value=3.1e-07  Score=56.01  Aligned_cols=65  Identities=15%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~   66 (79)
                      +++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+. .++..+..++..
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777778777777777777653 333444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=1.6e-07  Score=45.41  Aligned_cols=52  Identities=35%  Similarity=0.523  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++++|+.++++++...|.+..++..+|.++...|+++.|...+.+++..+|+
T Consensus        49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            3678999999999999999999999999999999999999999999998874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.67  E-value=4.1e-07  Score=53.22  Aligned_cols=54  Identities=17%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTY---AGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|++|+..|++++...|.++.+-   +.+|.+|++++++.+|+..+++.++++|+++
T Consensus        47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            57899999999999999987654   8999999999999999999999999999997

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.65  E-value=1.5e-07  Score=44.26  Aligned_cols=47  Identities=28%  Similarity=0.338  Sum_probs=42.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +.+|..++..|++++|+..|+++++.+|+++.++..++.++...|+.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~   47 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY   47 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence            46899999999999999999999999999999999999998877653

>PRK15331 chaperone protein SicA; Provisional

Probab=98.64  E-value=3.8e-07  Score=50.44  Aligned_cols=65  Identities=15%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +|++|+..|..+..++++||...+..|.||..+|+...|+.+|+.++. .|.+......-...+..
T Consensus        86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~  150 (165)
T PRK15331         86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEA  150 (165)
T ss_pred             HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999 67777555544444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.62  E-value=3.6e-07  Score=59.14  Aligned_cols=68  Identities=21%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      -++|..+.+..++.++.+.-+|..+|.++....+|++|+.||+.|+.++|+|...+..++-....+++
T Consensus        57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd  124 (700)
T KOG1156|consen   57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD  124 (700)
T ss_pred             hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            46888999999999999999999999999999999999999999999999999777777666655544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.61  E-value=7.5e-07  Score=49.96  Aligned_cols=70  Identities=14%  Similarity=0.037  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      |+.|.+.++..+..+|.+++.+++.|.++..+.+          +++|+.=|+.||.|+|+...+.-.++.++...+...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5788999999999999999999999999987755          456788899999999999999989999988877644

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.60  E-value=6.1e-07  Score=55.60  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++++..+++.++.+|+++..+..+|.++...+++.+|...|++++++.|++..+ ..++.++...|+.
T Consensus       309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~  377 (398)
T PRK10747        309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP  377 (398)
T ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence            35788999999999999999999999999999999999999999999999998753 3677777766654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.59  E-value=2.4e-06  Score=45.21  Aligned_cols=69  Identities=30%  Similarity=0.289  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD---DQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~   69 (79)
                      +.++|+..|++++....+.   ..++..+|.++..+|++++|+..+++++.-.|+   +......+..++...|+
T Consensus        16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence            4689999999999987655   578999999999999999999999999999888   55555556666665554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.58  E-value=3.9e-07  Score=60.53  Aligned_cols=71  Identities=24%  Similarity=0.281  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++.+|+.++..++...+. +...|+.+|.||..+|.++.|+.+|++++.+.|++..++..+..++...|+.+
T Consensus       429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E  500 (895)
T KOG2076|consen  429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE  500 (895)
T ss_pred             cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence            478899999999888774 46899999999999999999999999999999999999999999888877643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=5.4e-07  Score=57.58  Aligned_cols=67  Identities=22%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +.+|.-+|+.+++.+|.+..+|..||.+....++-..||..++++++++|+|..++..|+-.+...|
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            5678889999999999999999999999999999999999999999999999988777766555544

>TIGR00540 hemY_coli hemY protein

Probab=98.57  E-value=8.8e-07  Score=55.03  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSL--STYAGLAYTYHLQDNFSAAITYYH--KALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ...++..+++.++.+|+++  ..+..+|.++++.|++++|..+|+  .+++.+|++.... .++.++...|+.
T Consensus       315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~  386 (409)
T TIGR00540       315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK  386 (409)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence            4568888999999999999  889999999999999999999999  6888999887644 788888776653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.57  E-value=1e-06  Score=53.27  Aligned_cols=54  Identities=19%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|.++
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            468899999999999999999999999999999999999999999999987543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=5.8e-07  Score=51.61  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM   59 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   59 (79)
                      ++.|+..+.++++++|.+-.++-..+.+|.++..+++|+..|.+.+.++|....++..
T Consensus       150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  150 WESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            5678888888888888888888888888888888888888888888888877644433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=1.2e-06  Score=55.19  Aligned_cols=70  Identities=20%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +++|+..++..+...|+|+..+...+.++...++..+|.+.+++++.++|+.+..+.+++.++...|+..
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence            5789999999999999999999999999999999999999999999999999999999999998877654

>PRK11906 transcriptional regulator; Provisional

Probab=98.53  E-value=1.5e-06  Score=54.65  Aligned_cols=62  Identities=10%  Similarity=-0.020  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      .+|.+..+++++++|.|+.+++.+|.+....++++.|+..|++|+.++|+.+.++...+...
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            46777777888888888888888888877777888888888888888888776665555433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.53  E-value=8.5e-07  Score=51.00  Aligned_cols=57  Identities=18%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLS---TYAGLAYTYHLQ--------DNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ++++|+..++++++..|+++.   +++.+|.++...        |++++|+..|++++..+|++..+.
T Consensus        85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302        85 DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            578999999999999998876   799999999887        889999999999999999997554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.53  E-value=1.6e-06  Score=57.79  Aligned_cols=68  Identities=19%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|...+.++++.+|.++.+|+.+|.+|-.+|+..++..++-.|--++|++...|..+++.....|
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            47899999999999999999999999999999999999999998888999999888888877776655

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=5.7e-07  Score=52.58  Aligned_cols=65  Identities=25%  Similarity=0.300  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +|..|+.+|.+++.++|..+..|.+.+.|+++..+++.+.....++++++|+...+...++....
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999998877776666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.50  E-value=2.1e-06  Score=52.40  Aligned_cols=67  Identities=27%  Similarity=0.259  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSL-----STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+..++++++.+|.+.     ..+..+|.++..+|++++|+..|+++++++|++..++..++.++...|
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  228 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG  228 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence            4556666666665555432     234455666666666666666666666666666555555555544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.50  E-value=2.8e-06  Score=50.31  Aligned_cols=57  Identities=7%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ++++|+..|+++++..|+   .+++++.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus       195 ~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        195 KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            578999999999998887   489999999999999999999999999999999988544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.49  E-value=2.1e-07  Score=45.93  Aligned_cols=45  Identities=27%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      +|++|+.++++ .+.++.++..++.+|.|+.++|++++|+..++++
T Consensus        40 ~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   40 KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            37889999999 8889999999999999999999999999999875

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.48  E-value=5.4e-06  Score=44.97  Aligned_cols=54  Identities=30%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|.+|+..|+.+....|.   ...+-..+|.+|++.+++..|+..+++.++++|+|+
T Consensus        25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            478999999999998886   468999999999999999999999999999999998

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.5e-06  Score=50.33  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      .++...++++++++|.+..+.+.+|..++.+|+|.+|+..++..++..|-+......++.
T Consensus       210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            456677777777777777777777777777788888777777777776655433434433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.48  E-value=4.1e-07  Score=37.08  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++.+|.++.+.|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.9e-06  Score=54.83  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +|.+|+..-.+.++++|+=+..|+..|.++.-+|+|++|+..|.+.|+.+|+++....++..+.
T Consensus        51 ~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   51 SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            3667777777788888888888899999999999999999999999999999988888777766

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.45  E-value=4.5e-06  Score=52.00  Aligned_cols=68  Identities=19%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      .+|+..+.++++..|.+...+...+..+...++++.|+...++++.+.|++...|..++.++...++-
T Consensus       217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            57899999999999999999999999999999999999999999999999999999999998877653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.45  E-value=5.8e-07  Score=37.80  Aligned_cols=28  Identities=36%  Similarity=0.597  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +|.++|.+|..+|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999996654

>smart00028 TPR Tetratricopeptide repeats

Probab=98.44  E-value=6.2e-07  Score=35.45  Aligned_cols=33  Identities=30%  Similarity=0.563  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      .+++.+|.++...++++.|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=4.2e-06  Score=49.36  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|+..+...++.-+.|.++|..++.+|...|+|..|.-||++++-+.|-++.....+++++=..|.
T Consensus       138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            566666666777788899999999999999999999999999999999999888888887766553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.43  E-value=5.3e-06  Score=44.84  Aligned_cols=53  Identities=28%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +.+.|++.|.+++.+.|..+.+|++.+.++..+|+.++|+..+++++++..+.
T Consensus        58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            46789999999999999999999999999999999999999999999996544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.42  E-value=6.8e-06  Score=45.33  Aligned_cols=54  Identities=22%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYH-------LQDNFS-------AAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+++++++++|.....+.++|.++.       ..|+++       +|+..|++++..+|.+.
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            4789999999999999999999999999999       777766       66777777888888665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.42  E-value=6.8e-06  Score=46.82  Aligned_cols=54  Identities=30%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|.+|+..|++++...|.+   +.+.+.+|.++++.|++..|+..|++.++..|+++
T Consensus        20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen   20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            5789999999999998875   68999999999999999999999999999999987

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.42  E-value=7.3e-07  Score=54.76  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +.+|+..|..+++.+|++..+++..|.+|..+|+...|+..+.+++++-|++..++...+.++...|+
T Consensus        54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence            56889999999999999999999999999999999999999999999999998887777777666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=3.4e-06  Score=50.61  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +.+|...|++..+..+.++..++.++.|+..+|++++|...+++++..+|+++.+..++..+....|..
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            568889999988888889999999999999999999999999999999999998877777666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=4.2e-06  Score=49.46  Aligned_cols=70  Identities=17%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~   70 (79)
                      +|..|...|..-++.-|++   +.++|-||.+++.+|++++|...|..+.+-.|+++   .++..++..+.+.++.
T Consensus       156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~  231 (262)
T COG1729         156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT  231 (262)
T ss_pred             CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence            4788999999999999875   68999999999999999999999999999998886   5566667776666554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.38  E-value=6.8e-06  Score=48.32  Aligned_cols=71  Identities=23%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +++.|...|.+++++.|.++.+..|+|..|...|+++.|...+..+....+.+..+..++..+....|+..
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence            46789999999999999999999999999999999999999999999999999988888888877766543

>PRK11906 transcriptional regulator; Provisional

Probab=98.38  E-value=2.3e-06  Score=53.82  Aligned_cols=53  Identities=19%  Similarity=0.109  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++.|...|++++.++|+++.+|+..|++....|+.++|+...+++++++|.-.
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            57899999999999999999999999999999999999999999999999654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.36  E-value=7.8e-06  Score=52.49  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+.++++...|..++.+...|.++.+.|++.+|..+++.|-.+|+.|-+.-......+...|
T Consensus       209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            47899999999999999999999999999999999999999999999999999866555555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.35  E-value=2.1e-06  Score=58.17  Aligned_cols=65  Identities=22%  Similarity=0.325  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +.+|+..|+.+++.+|.|..+|..+|.+|...|++..|++.|.++..++|.+.......+-...+
T Consensus       578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999998655444433333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=98.33  E-value=2.6e-05  Score=39.31  Aligned_cols=65  Identities=17%  Similarity=0.085  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhh
Q 038754            5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGR   69 (79)
Q Consensus         5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~   69 (79)
                      .+..+++.+..+|+++.+.+.+|..+...|++++|+..+-.+++.+|+.  -.++..+-.+....|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567899999999999999999999999999999999999999999866  4566666666655543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=7e-06  Score=55.47  Aligned_cols=64  Identities=11%  Similarity=0.075  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      .++.++-..+-..+++..+++.+|.||-++|+.++|...|+++++++|+|+.+..+++-.+...
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            4556666666667888899999999999999999999999999999999999999988877764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=8.7e-06  Score=50.43  Aligned_cols=70  Identities=27%  Similarity=0.293  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNR---------------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +|..|...|++++..-..               -..++.|++.|+.++++|..|+..+.++|.++|+|..+....+.++.
T Consensus       223 k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l  302 (397)
T KOG0543|consen  223 KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL  302 (397)
T ss_pred             hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence            366777777777664431               14689999999999999999999999999999999988877777777


Q ss_pred             Hhhhc
Q 038754           66 DEGRH   70 (79)
Q Consensus        66 ~~~~~   70 (79)
                      ..++.
T Consensus       303 ~~~e~  307 (397)
T KOG0543|consen  303 ALGEY  307 (397)
T ss_pred             hhccH
Confidence            66553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.31  E-value=8.6e-06  Score=54.75  Aligned_cols=53  Identities=11%  Similarity=0.076  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|++.
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~  170 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ  170 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence            44555555555555555555555555555555555555555555555555533

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=5.5e-06  Score=50.42  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~   71 (79)
                      +++.|+..+.++++.+|+...+-..+|.++...|+|..|++.++.+++.||... .+...+..++...|+..
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            367899999999999999999999999999999999999999999999999875 66677788887776643

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.30  E-value=1.5e-06  Score=53.45  Aligned_cols=63  Identities=24%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      +|++|+.||.+.+..+|+++-.+.+.+.+|+++..+..|...+..|+.+|-....++...+.+
T Consensus       112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999886655444443333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.28  E-value=1.7e-05  Score=53.36  Aligned_cols=67  Identities=13%  Similarity=-0.051  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..+++.+...|.++.++..+|.++...|++..|...++.+..++|++..+....+.+....
T Consensus       431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l  497 (822)
T PRK14574        431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL  497 (822)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence            4688999999999999999999999999999999999999999999999999987766665555544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.27  E-value=5.2e-06  Score=55.92  Aligned_cols=68  Identities=16%  Similarity=0.239  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +|++|..+|.++++.++++ ...++.+|..|.+.|+.+.|+.+|+++++..|++...+.-++..+...+
T Consensus       322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            5789999999999999988 8889999999999999999999999999999999988888888877654

>PRK10941 hypothetical protein; Provisional

Probab=98.27  E-value=2.9e-05  Score=46.27  Aligned_cols=57  Identities=14%  Similarity=0.038  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +++.|+.+.+.++.+.|+++.-+.-.|.+|.++|++..|...++..++.-|+++.+.
T Consensus       196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            478999999999999999999999999999999999999999999999999998544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=1.1e-05  Score=51.37  Aligned_cols=69  Identities=23%  Similarity=0.310  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      .++|+.+|-+.-.+--++..++..++.+|-.+.+..+|++++.++..+-|++|.....+++++...|.+
T Consensus       540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk  608 (840)
T KOG2003|consen  540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK  608 (840)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence            567777777776666777888888888888888888888888888888888888888888888776654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.24  E-value=1e-05  Score=53.51  Aligned_cols=71  Identities=24%  Similarity=0.218  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID   73 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~   73 (79)
                      ++|..|+.++-.+.|-.+..|+..|.++...|...+|...|..++.+||+++..+..++.++...|...+.
T Consensus       667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la  737 (799)
T KOG4162|consen  667 DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA  737 (799)
T ss_pred             hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence            46777899999999999999999999999999999999999999999999999999999999999866554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.24  E-value=3.3e-05  Score=48.04  Aligned_cols=68  Identities=18%  Similarity=0.042  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSL-STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++.|..++.++.+.+|++. ......+..+...|+++.|...+++.++.+|+++.+...+..++...+
T Consensus       133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g  201 (398)
T PRK10747        133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG  201 (398)
T ss_pred             CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            46678888888888888764 333344778888888888888888888888888877666666655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=2.4e-05  Score=45.13  Aligned_cols=67  Identities=25%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +|.+|..-|..++.+.|.-     .-+|.+.|.++.+++.++.|+..+.+++.++|....+....+.++...
T Consensus       110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            4789999999999999964     468899999999999999999999999999999886666655555543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.7e-05  Score=49.85  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +.+++..+++.+...|+ ...+..+|.++..++.+.+|+..|..|+++||++..+...+...-+..
T Consensus       454 ~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  454 TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            56788888888887765 578899999999999999999999999999999998877776655443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.20  E-value=3.5e-06  Score=40.84  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCCH---HHHHHHHHHHHHhhh
Q 038754           17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL----KPDDQ---FCTEMLSLALVDEGR   69 (79)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~---~~~~~l~~~~~~~~~   69 (79)
                      |+-..+++++|.+|..+|++++|+.+|++++.+    .++++   .++.+++.++...|+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~   61 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence            334678999999999999999999999999976    22332   455667777766654

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.20  E-value=6.4e-06  Score=38.78  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=36.3

Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           30 YHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +...|++++|+..|++++..+|++..++..++.++...|+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~   41 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY   41 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence            35789999999999999999999999999999999887654

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.18  E-value=4e-05  Score=41.40  Aligned_cols=51  Identities=24%  Similarity=0.093  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            3 HEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ..+...++..++..|++   ..+.+.+|.+++..|++++|...|+.++...|++
T Consensus        28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~   81 (145)
T PF09976_consen   28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP   81 (145)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence            34444555555555555   4455556666666666666666666666555444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.17  E-value=1.9e-05  Score=47.78  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           14 TLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ..+|..+..+..+|.++..+|++++|+..+++++.++|+++.+...++.++...|+
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            45566667777888999999999999999999999999999888888887776554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.16  E-value=9.6e-05  Score=39.92  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|...|+.++...|+.   +.+...+|.++...|++++|+..++. +.-.+-.+.+....++++...|+.
T Consensus        63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   63 DYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCH
Confidence            5789999999999988665   56889999999999999999999966 333344456777788888877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.16  E-value=8.1e-06  Score=38.96  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           27 AYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        27 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ..+|...++++.|+.++++++.++|+++..+...+.++...|+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~   45 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY   45 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH
Confidence            56789999999999999999999999998888888888776653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.1e-05  Score=50.51  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      +.+|-++|..+|.++|++    ..+|.++|.+..++|+.++|+...+.+++|||.-..+....+
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra  328 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA  328 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence            566777777888887764    456777777777778877777777777777776654433333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.10  E-value=3.6e-05  Score=41.82  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN---------------FSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      ++++|+..+++-++++|.++   .+++..|.+++.+..               ...|+..|+++++..|++..+..
T Consensus        62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            47899999999999999874   789999999999987               88999999999999999885543

>TIGR00540 hemY_coli hemY protein

Probab=98.09  E-value=9.1e-05  Score=46.20  Aligned_cols=65  Identities=17%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSL-STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|+++.+...+..++..
T Consensus       134 ~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       134 EARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445555555555555443 3333345555555555555555555555555555444444444433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.08  E-value=8.7e-06  Score=53.58  Aligned_cols=67  Identities=19%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++.|..+|..++.++|++..+|+|++.+|.+.++..+|...+.+|++.+-++...|.++..+..+.
T Consensus       534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv  600 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV  600 (777)
T ss_pred             hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence            4678999999999999999999999999999999999999999999999977765555554444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.08  E-value=8.2e-06  Score=35.63  Aligned_cols=28  Identities=29%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAY   28 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~   28 (79)
                      ++++|+.+|+++++.+|+++.+|..+|.
T Consensus        16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   16 QPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            5789999999999999999999999885

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.03  E-value=8.2e-05  Score=47.95  Aligned_cols=67  Identities=19%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..+.+.-..-.+....+-..|.++.++|++++|...|...+..+|+|...+..+..++.-.
T Consensus        19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen   19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence            4678899888888888888999999999999999999999999999999999999888888887433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=5e-05  Score=47.83  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++..|+.+-.++++.+|.+..++...|.++...+++.+|+-.|+.|..+.|..-.++..+-+.+...+
T Consensus       315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999999999888887777666544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.8e-05  Score=49.06  Aligned_cols=52  Identities=21%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +.+|.++|.++..++|....+|..+|..|.-.|+.++|+.+|..|-++-|+.
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence            4566777777777777777777777777777777777777777776666644

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.99  E-value=4e-06  Score=52.84  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      |+.|+..|.++++++|+.+..+.+.+.++.+.+++..|+....++++++|+..
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~   72 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI   72 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence            44455555555555555555455555555555555555555555555554443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.99  E-value=1e-05  Score=33.61  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             HHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754           42 YYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus        42 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +|+++++++|+++.++.+++.++...|+..
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~   30 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYE   30 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence            489999999999999999999999877643

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.98  E-value=4.2e-05  Score=44.65  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      -|.-.|.+++.+.|+-|.+++-+|.-+...|+++.|.+.|..++++||+...+..
T Consensus        83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence            3555678888888888888888888888888888888888888888887764443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.97  E-value=3.5e-05  Score=47.04  Aligned_cols=58  Identities=19%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM   59 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   59 (79)
                      .++|...|..++.+.|+++.++..+|...-..++.-+|=.+|-+|+.++|.|..+..+
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            5789999999999999999999999999999999999999999999999999855443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.97  E-value=3.3e-05  Score=48.22  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +++.|+.+.++++++.|++..+|+.++.+|..+|+++.|+..+.-+--..+.+.
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k  302 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDK  302 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccc
Confidence            478999999999999999999999999999999999999987775555444443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.97  E-value=0.00013  Score=47.05  Aligned_cols=67  Identities=18%  Similarity=0.097  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            3 HEAISCYERALTL--LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         3 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ..+.....+++.+  +|.++.++..+|..+...|++++|...+++++.++| +..++..++.++...|+.
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~  469 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN  469 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH
Confidence            3455555665554  777889999999999999999999999999999999 477888888888877653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=1.1e-05  Score=50.51  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +|..|+..+..+++..|++...|.+.+.++...+++++|...+++.++++|+++..+
T Consensus        64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~  120 (486)
T KOG0550|consen   64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ  120 (486)
T ss_pred             hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence            478899999999999999999999999999999999999999999999999987433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.95  E-value=3.7e-05  Score=32.62  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ..++.++|.+|..+|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999986

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.92  E-value=0.00018  Score=44.76  Aligned_cols=69  Identities=19%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ..+-+...++.++.+|++|..++.+|..+++.+.+.+|..+++.+++..|+.. .+..+++++...|+..
T Consensus       310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~  378 (400)
T COG3071         310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE  378 (400)
T ss_pred             chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence            34556778889999999999999999999999999999999999999998654 3456788877776543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=4.9e-05  Score=45.67  Aligned_cols=60  Identities=22%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF-SAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      +|++|...+.+++..+|+++.++.|+..+...+|+. +.+.+...+....+|++++....-
T Consensus       216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            589999999999999999999999999999999999 556677788788999999766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.90  E-value=0.00012  Score=47.91  Aligned_cols=63  Identities=22%  Similarity=0.342  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      +|++|+.||+.|+.++|++...|.-++..-.++++++.....-.+.+++.|+....|..++.+
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs  152 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA  152 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999987555444433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.87  E-value=0.00025  Score=38.40  Aligned_cols=67  Identities=19%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH---HHHHHHHhh
Q 038754            2 YHEAISCYERALT-LLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM---LSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~   68 (79)
                      ..+++.++..+++ -+|. .-.+.+-++..+++.++|+.++.+.+..++..|+|..+...   +.+.+...|
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkeg  122 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEG  122 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcc
Confidence            4678889999997 4443 46788889999999999999999999999999999977644   344444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.87  E-value=2e-05  Score=53.29  Aligned_cols=67  Identities=21%  Similarity=0.247  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--KPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~   68 (79)
                      +.+|..+|.++.+.-.+.+++|.|+|.||..+|+|..|++.|+.+++-  ..+++.+...|+.+.-..+
T Consensus       662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~  730 (1018)
T KOG2002|consen  662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG  730 (1018)
T ss_pred             chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence            344555555554444445566666666666666666666666666643  2234455555555554443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.87  E-value=4.3e-05  Score=48.37  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGID   73 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~   73 (79)
                      ++..|+..+.++++++|....+|+..|.+....+++.+|+..|+....+.|+++.+...+..+-.-..+...+
T Consensus        53 ~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe  125 (476)
T KOG0376|consen   53 SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE  125 (476)
T ss_pred             hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999999999999999999998888876666555444433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=2.2e-05  Score=48.19  Aligned_cols=47  Identities=15%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +-|+.+|++++...-.+|..+.|+|.|.+..++++-++..|++++..
T Consensus       341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST  387 (478)
T ss_pred             HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence            34555555555555555555555555555555555555555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.86  E-value=0.00017  Score=38.79  Aligned_cols=48  Identities=25%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++++|+..+++++..+|.+-.++..+-.+|..+|+...|+..|++..+
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            367788888888888888888888888888888888888888877744

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=97.85  E-value=0.00025  Score=41.72  Aligned_cols=62  Identities=24%  Similarity=0.236  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      |..+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++-...-++.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997766668888888888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00026  Score=43.48  Aligned_cols=59  Identities=22%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM   59 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   59 (79)
                      +|..|...|.+.++..-.+    ..+|+|.+-|.+.+|+|+.|+....++++++|++..++..
T Consensus        96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            4788999999999877554    5688999999999999999999999999999999854433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.80  E-value=8.4e-05  Score=43.61  Aligned_cols=56  Identities=25%  Similarity=0.237  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   56 (79)
                      +.+.+.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+...
T Consensus        10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976          10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            45678899999999999999999999999999999999999999999999987633

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.79  E-value=0.001  Score=36.86  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++...+..+--+.|+.+..-..-|+.+...|++.+|+..++.+..-.|..+.+...++.++...++
T Consensus        26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            56778888888889999999999999999999999999999999999999999888888888776554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=4.5e-05  Score=44.54  Aligned_cols=59  Identities=12%  Similarity=0.056  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM   59 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   59 (79)
                      +|+.|.+.|..+++++|..-.++.|.|..++--|++.-|.+.+.+--+-||+||+...+
T Consensus       114 ~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW  172 (297)
T COG4785         114 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW  172 (297)
T ss_pred             cchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence            47889999999999999999999999999999999999999999999999999955433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00023  Score=45.66  Aligned_cols=65  Identities=20%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ..+|++++.++..+-|++|..+..+|.+|-+-|+..+|++++-...+.-|.+.....+++..+.+
T Consensus       574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid  638 (840)
T KOG2003|consen  574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID  638 (840)
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence            56899999999999999999999999999999998888888888888888887666666555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00071  Score=40.27  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      .+-|..|+......-|.++..-...|..+-.+|.+++|+++|+..+.-||.|.-.+..---++...|+
T Consensus        68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence            34577777777777788888888888888888888888888888888888887666554444444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=7e-05  Score=46.11  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      +++|+.+|+.+++.+|.+.++.-.+|.-|+.-++++-|+.+|++.+++.-.++....+++-+
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC  367 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC  367 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence            34555555555555555555555555555555555555555555555555555444444433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.00023  Score=43.49  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   56 (79)
                      +|.+|+.++..-.+.+|.+...+..+|.||+...++..|-.||++.-.+.|.-...
T Consensus        25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY   80 (459)
T KOG4340|consen   25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY   80 (459)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence            47889999999999999999999999999999999999999999999999976633

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.68  E-value=0.00036  Score=41.25  Aligned_cols=54  Identities=26%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|.+|...|+.+...+|.+   ..+...++.++++.+++++|+...++-+++.|+++
T Consensus        49 n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          49 NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            5789999999999999865   57899999999999999999999999999999987

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.66  E-value=0.00044  Score=45.90  Aligned_cols=67  Identities=18%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      .++|+.+++++++.-|+....|..+|.++.++++.+.|...|...++.-|..+..|..+.++-...|
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999888877777665554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.66  E-value=0.00084  Score=39.46  Aligned_cols=68  Identities=18%  Similarity=0.002  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHccCCCCH---HH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQD---------------N---FSAAITYYHKALWLKPDDQ---FC   56 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~---~~   56 (79)
                      ++++|+..+++.++..|++   +.+++.+|.++...+               +   ...|+..|+..++..|+..   .+
T Consensus        84 ~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A  163 (243)
T PRK10866         84 DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA  163 (243)
T ss_pred             CHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            5789999999999999986   578999998875554               1   2468899999999999987   33


Q ss_pred             HHHHHHHHHHhh
Q 038754           57 TEMLSLALVDEG   68 (79)
Q Consensus        57 ~~~l~~~~~~~~   68 (79)
                      ...+..+....+
T Consensus       164 ~~rl~~l~~~la  175 (243)
T PRK10866        164 TKRLVFLKDRLA  175 (243)
T ss_pred             HHHHHHHHHHHH
Confidence            343444444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.00094  Score=39.97  Aligned_cols=68  Identities=15%  Similarity=0.070  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +.+|.-+|++.-+.-|..+..+...+.|...++++++|...++.+|.-++++|.+..++.-+....|.
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            46777888888887788899999999999999999999999999999999999777776555554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.63  E-value=0.00055  Score=44.15  Aligned_cols=68  Identities=21%  Similarity=0.231  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL--------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQ---FCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~   64 (79)
                      +|++|+..|..+++.        +|.-......+|.+|..++++.+|+..|++|+.+     .++|+   .+..+|+.++
T Consensus       214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly  293 (508)
T KOG1840|consen  214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY  293 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            588999999999998        5555566667999999999999999999999987     35666   4445555555


Q ss_pred             HHhh
Q 038754           65 VDEG   68 (79)
Q Consensus        65 ~~~~   68 (79)
                      -..|
T Consensus       294 ~~~G  297 (508)
T KOG1840|consen  294 YKQG  297 (508)
T ss_pred             hccC
Confidence            4433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.61  E-value=0.00091  Score=35.42  Aligned_cols=48  Identities=23%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            1 IYHEAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++++|+..+++.+...|+   +..+...++.++...|++++|+.++-.++.
T Consensus        53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            578999999999999898   888889999999999999999999988775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=0.0017  Score=38.73  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ++++|...|..+++..|++   |++++.+|.+...+|+.+.|...|+++++..|+...+.
T Consensus       193 ~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         193 DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            4788999999999988765   79999999999999999999999999999999987554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.55  E-value=0.00037  Score=47.52  Aligned_cols=48  Identities=23%  Similarity=0.263  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ++++|...|+++++.+|+++.+++++|..|... +.++|+.++.+|+..
T Consensus       131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999876

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.50  E-value=0.0025  Score=35.02  Aligned_cols=69  Identities=13%  Similarity=0.043  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++.++...+..+--+.|+.+..-..-|+++...|++.+|+..++....-.+..+.+...+..++...++
T Consensus        25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            356777788888888999999999999999999999999999999999998888888788777776554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.001  Score=40.87  Aligned_cols=69  Identities=20%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+...++..++.+..     +..+..++..+....+++.|+..+.+|++-+|+...+-..++++....|+
T Consensus       156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~  229 (389)
T COG2956         156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD  229 (389)
T ss_pred             HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence            4789999999999998865     56778888888899999999999999999999998777777777665554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.49  E-value=0.0038  Score=33.51  Aligned_cols=51  Identities=27%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ..+...++..+...|+++.|+..+++++.++|.+..++..+..++...|+.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH
Confidence            457777888899999999999999999999999998888888888777654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.49  E-value=0.00083  Score=38.33  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHH---HHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFC---TEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~---~~~l~~~   63 (79)
                      ++++|+..+++.++..|+++   .+++.+|.+++.+..           ..+|+..|+..+...|+++.+   ...+..+
T Consensus        57 ~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen   57 DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             -HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH
Confidence            57899999999999999874   689999999876543           347999999999999999733   3344444


Q ss_pred             HHHh
Q 038754           64 LVDE   67 (79)
Q Consensus        64 ~~~~   67 (79)
                      ....
T Consensus       137 ~~~l  140 (203)
T PF13525_consen  137 RNRL  140 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=97.46  E-value=0.00089  Score=28.11  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITY--YHKALWLKPDD   53 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~p~~   53 (79)
                      ++.++.+|..+..+|++++|+..  |.-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            35688899999999999999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.37  E-value=0.00042  Score=44.68  Aligned_cols=50  Identities=36%  Similarity=0.454  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            1 IYHEAISCYERALTLL--------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ++.+|+..|.+++++-        |.-..++.++|.+|...|++++|..++++|+.|.
T Consensus       256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            4788999999988753        4456899999999999999999999999999884

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.00059  Score=41.06  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|..|...+.+++..+|.++.+.++.|.|...+|+..+|++..+.++.++|.+.
T Consensus       267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            466788899999999999999999999999999999999999999999999876

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.32  E-value=0.0012  Score=43.48  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      .+|-..+.+++.++...|..++.+|.+|..+.+.+.|++.+++|++++|+++.+...+
T Consensus       659 ~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  659 LDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             ccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence            3567778888999988899999999999999999999999999999999999776554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0004  Score=41.00  Aligned_cols=48  Identities=19%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |+.....++++++++|+...+++.+|.+......+++|+..++++..+
T Consensus        60 ~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   60 WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            667788899999999999999999999999999999999999999765

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.27  E-value=3.6e-05  Score=47.14  Aligned_cols=53  Identities=25%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +++|+..|..+++++|.....+...+.++.++++...|+..|..++.++|+..
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            57788889999999999999999999999999999999999999999999775

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0037  Score=37.39  Aligned_cols=53  Identities=21%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      |-++++.++.+++.+|++..+++..|.+....=+..+|...+.++|+++|.-.
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            55788889999999999999999999999999999999999999999999754

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0032  Score=37.63  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..+...+..-|+++.+-
T Consensus       196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            367899999999999999999999999999999999999999999999999988443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.25  E-value=0.0047  Score=36.99  Aligned_cols=64  Identities=16%  Similarity=0.059  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHL-QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +.|..+|.++.+..+....+|...|..-+. .++.+.|...|+.+++.-|.+...+..+.+-+..
T Consensus        18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen   18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455566666665444556666666666445 3444446666666666666666555444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=97.16  E-value=0.00087  Score=25.91  Aligned_cols=24  Identities=17%  Similarity=0.027  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYH   44 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~   44 (79)
                      .+.+.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            567899999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0014  Score=40.39  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   56 (79)
                      +|..|+..++++++++|.+..+++.-+.|++.+.++.+|..+++..+.++-....+
T Consensus       134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            36789999999999999999999999999999999999999999998887555433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.11  E-value=0.0012  Score=28.04  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      .++..+|.+-...++|++|+..|++++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.0084  Score=37.73  Aligned_cols=64  Identities=22%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      |++|+..|.+++.-+|......-.++.||+++.=++-+.+.+.--++.-|+.+++........-
T Consensus       167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f  230 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF  230 (557)
T ss_pred             HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence            6899999999999999998899999999999999999998888889999999988766655443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.0058  Score=39.70  Aligned_cols=50  Identities=12%  Similarity=0.031  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++...+|+.|..|...|++-.|.+||.+++..-..+|..|..++.+..-.
T Consensus       333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998888887665543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.07  E-value=0.011  Score=35.42  Aligned_cols=53  Identities=13%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      .+.|..+|+.+++.-|.+...|..+...+...|+.+.|...|++++..-|...
T Consensus        52 ~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   52 PKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            34599999999999999999999999999999999999999999998877655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0067  Score=36.31  Aligned_cols=63  Identities=14%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL--------LNRS----------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      +|.+|...|+.++..        .|.+          ...+.|++.|+...|+|-++++.....|..+|++..++...++
T Consensus       193 ~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRak  272 (329)
T KOG0545|consen  193 RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAK  272 (329)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            356666666666542        3544          4588999999999999999999999999999999866655444


Q ss_pred             H
Q 038754           63 A   63 (79)
Q Consensus        63 ~   63 (79)
                      +
T Consensus       273 A  273 (329)
T KOG0545|consen  273 A  273 (329)
T ss_pred             H
Confidence            4

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.97  E-value=0.0071  Score=40.55  Aligned_cols=69  Identities=17%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++.|..+|.++....|. ..+|+..+.+...++..++|+..++.+++..|+++..+.+++......+...
T Consensus       634 ~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  634 LERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE  702 (913)
T ss_pred             HHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence            56677777777666554 5778888888888999999999999999999999988888888887766544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.009  Score=38.71  Aligned_cols=54  Identities=13%  Similarity=0.062  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~   56 (79)
                      .+--..|.+++..+|++++.|..-|...+..+. .+.|...+.++|+.+|+++..
T Consensus       122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L  176 (568)
T KOG2396|consen  122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL  176 (568)
T ss_pred             hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence            344567889999999999999988888777776 888999999999999999833

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.94  E-value=0.0047  Score=38.66  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      |..|...|..++.++.....+|...|.+...+|...+|...++.+|.+.|.+......+
T Consensus       147 FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  147 FAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999987544433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.89  E-value=0.023  Score=32.96  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            2 YHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +..|+..|.++++....      ...+.+.+|.+..+.|++++|+.+|.+++.....+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            35788999999987743      36789999999999999999999999999765433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.85  E-value=0.015  Score=29.29  Aligned_cols=51  Identities=20%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHHHhhCC----CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLN----RS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +|..|++.+.+.+....    ..     ..++.++|.++...|++++|+..++.++++-.
T Consensus        13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45667666555555432    22     46788899999999999999999999998843

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.012  Score=35.37  Aligned_cols=58  Identities=21%  Similarity=0.133  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT-YYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~   58 (79)
                      +|++|...++.++..++++|.++.|+-.+-..+|...++.. ...+....+|.+++...
T Consensus       222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH  280 (299)
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence            68999999999999999999999999999999999877654 46677788999996653

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.014  Score=39.09  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +|..++++|...+.--|+|      .....+++.||..+.+.+.|.+.++.|-+.+|++++....+-......+
T Consensus       369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~  442 (872)
T KOG4814|consen  369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED  442 (872)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence            4778889999888877654      5678899999999999999999999999999999988777665554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.75  E-value=0.0015  Score=26.43  Aligned_cols=19  Identities=42%  Similarity=0.581  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC
Q 038754            1 IYHEAISCYERALTLLNRS   19 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~   19 (79)
                      ++++|+.+|+++++++|++
T Consensus        16 ~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen   16 DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHHHSTTH
T ss_pred             CchHHHHHHHHHHHHCcCC
Confidence            4789999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.74  E-value=0.0026  Score=25.55  Aligned_cols=19  Identities=42%  Similarity=0.581  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHhhCCCC
Q 038754            1 IYHEAISCYERALTLLNRS   19 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~   19 (79)
                      ++++|+.+|+++++++|++
T Consensus        16 ~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen   16 NYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             -HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=96.67  E-value=0.027  Score=30.70  Aligned_cols=62  Identities=15%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754           10 ERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      .+.+++- ...+.....+...+..|++..|....+.++..+|+|..++....+++...+....
T Consensus        61 ~~~v~l~-GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   61 KRYVELA-GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            3344443 2356777888889999999999999999999999999999999999998887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.60  E-value=0.0085  Score=35.82  Aligned_cols=50  Identities=24%  Similarity=0.260  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            1 IYHEAISCYERALTLLN--RS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ++++|+.+|+++++.-.  ++    ..++..+|.++..+|+|.+|+..|+++....
T Consensus       130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            47889999999988642  22    4688899999999999999999999998753

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=96.53  E-value=0.036  Score=32.75  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   56 (79)
                      ..+++...+.-++.+|.+......+-..+.-.|+++.|...++-+-.+.|++..-
T Consensus        17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~   71 (273)
T COG4455          17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG   71 (273)
T ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence            5788999999999999999999999999999999999999999999999988633

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.52  E-value=0.05  Score=29.83  Aligned_cols=52  Identities=23%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      .++|+..+.+++++..+.    +.++...|.+|..+|+.+.|...|+.+-++...+
T Consensus        93 ~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen   93 DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            578999999999998654    6788999999999999999999999887775544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.48  E-value=0.038  Score=32.03  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +..|...+++..+-+|.  +|+.+..+|.+|..+|.+.+|...|+.++...|+.. +...+...+..+|
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg  207 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG  207 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence            34566667777777764  577777788888888888888888888888887654 2333444444444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.45  E-value=0.094  Score=32.15  Aligned_cols=59  Identities=15%  Similarity=0.010  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      +.-+.++++|++.+|++...+..+-.+..+..+.+....-+++++..+|+++..|..+-
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL  106 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYL  106 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999886555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.44  E-value=0.026  Score=37.65  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ...|..+...+...|+++.|...+++.+.+.|++...+..+.+.+...
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            455666666666666777777777777777776654444444444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.035  Score=35.09  Aligned_cols=53  Identities=23%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRS-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      |..|+..++-.+..+... ...-.-+|.|++++|+|++|...|.-+..-+..+.
T Consensus        38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~   91 (557)
T KOG3785|consen   38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA   91 (557)
T ss_pred             chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc
Confidence            445555555544443321 12333356777777777777777777766443333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.40  E-value=0.041  Score=35.82  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVD   66 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~   66 (79)
                      ..+...+|.|..++|+.++|++.++..++..|.  +..++.++..++..
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe  307 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE  307 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence            456678999999999999999999999988774  33455555555544

The molecular function of this protein is uncertain.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.39  E-value=0.058  Score=29.13  Aligned_cols=51  Identities=35%  Similarity=0.539  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            2 YHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++.++..+.+++...+. ....+..++.++...+++..|+..+..++...|.
T Consensus       183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            45566666666666666 5666666666666666667777777777666665

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=96.36  E-value=0.061  Score=30.41  Aligned_cols=54  Identities=24%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +..+.+.++.++..| ++..+.+++.++..+|+.++|.....++..+-|.+.+..
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~  181 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAA  181 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHH
Confidence            345566777777777 589999999999999999999999999999999555433

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.32  E-value=0.066  Score=36.94  Aligned_cols=50  Identities=22%  Similarity=0.185  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++|..+++..-...++|-..+-.+-.||..+++.++|..+|++++..+|+
T Consensus        60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            44555555444455555555666666666666666666666666666665

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.048  Score=34.61  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF--SAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++-+.+...+++.+|++..+|+.+.+++.+.+..  ..-++..++++++||.+.-+|..-.-++
T Consensus        92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~  155 (421)
T KOG0529|consen   92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVV  155 (421)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence            4567788999999999999999999999877764  7788899999999999875554433333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.24  E-value=0.075  Score=30.84  Aligned_cols=68  Identities=24%  Similarity=0.362  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALT-LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~   69 (79)
                      +.+|...|++++. +-.+++..+..++.+.+..+++..|...+++..+.+|..  |..+..++.++...|.
T Consensus       105 ~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~  175 (251)
T COG4700         105 YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK  175 (251)
T ss_pred             hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence            4455555555543 233556666666666666666666666666666665532  2334444555544443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.23  E-value=0.033  Score=36.73  Aligned_cols=67  Identities=27%  Similarity=0.220  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD---NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ..++..|.+++...|+...++.+.+.++.+.+   +.-.|+.....|++++|....++..+.+++...++
T Consensus       391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR  460 (758)
T ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence            35667777777777877777777777776554   34447777777888888877777777777766554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.21  E-value=0.011  Score=36.62  Aligned_cols=55  Identities=13%  Similarity=0.107  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAG-LAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      .+--..|.++++.+|.+.+.|.. -+.=+...++++.+...|.++++.+|++|..|
T Consensus       124 ~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         124 GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             HHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            34456788999999999999976 44447889999999999999999999999444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.18  E-value=0.065  Score=35.82  Aligned_cols=48  Identities=13%  Similarity=0.023  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ++.|...++++++++|++...|..++.+|.+.|++++|.+.++...+.
T Consensus       510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            567888899999999999999999999999999999999999877654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.18  E-value=0.088  Score=34.13  Aligned_cols=49  Identities=18%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      |.++.-+..=..+..| ++.++..+|.|...+.+|.+|-.++   ..+.|++.
T Consensus       478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l---~~LP~n~~  526 (549)
T PF07079_consen  478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL---QKLPPNER  526 (549)
T ss_pred             HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH---HhCCCchh
Confidence            4555556666778888 8999999999999999999999988   56667544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.13  E-value=0.074  Score=36.72  Aligned_cols=69  Identities=16%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      +.+|+..+.+.++..|+.+.+.-.-|..+.++|+.++|..+++..-...++|-.....+..++.+.++.
T Consensus        25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence            678999999999999999999999999999999999999888777777888887777888888776653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.10  E-value=0.087  Score=28.42  Aligned_cols=49  Identities=33%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHccCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAY-TYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      ..++..+..++...+.+.......+. ++...|++..|+..|.+++..+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            44555555555555554444444444 55566666666666666655544

>PLN03077 Protein ECB2; Provisional

Probab=96.06  E-value=0.07  Score=36.47  Aligned_cols=44  Identities=11%  Similarity=0.193  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLN--RSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      +++|..+|+.+.+..+  .+...|..+..++.+.|+.++|...+++
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3455555555543221  1234455555555555555555554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=95.99  E-value=0.044  Score=23.99  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           23 YAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        23 ~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .+.+|.+|..+|+.+.|...++.++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.94  E-value=0.18  Score=35.77  Aligned_cols=46  Identities=11%  Similarity=0.126  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            3 HEAISCYERALTLL-NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         3 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++|...|+++.+.+ +.++..|..+...|.+.|++++|+..|.+..+
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34444444444433 22334444444444444444444444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.073  Score=35.33  Aligned_cols=50  Identities=18%  Similarity=0.119  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      .++|+.++.   .+++.+..++...|.+++++|+|++|...|++.++.+-++.
T Consensus        95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            456666665   56677788999999999999999999999999999887665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.12  Score=32.54  Aligned_cols=63  Identities=14%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             HHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            7 SCYERALTL-LNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         7 ~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ..+++++-. +++-   ..++..++.++...|-+++|...-+++++++|.+.++.-...+++.-.++
T Consensus       158 ~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r  224 (491)
T KOG2610|consen  158 NAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR  224 (491)
T ss_pred             hHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence            344555544 4443   56777788889999999999999999999999999887777777765554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.70  E-value=0.092  Score=33.86  Aligned_cols=50  Identities=26%  Similarity=0.372  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            2 YHEAISCYERALTLLNR----SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      .++|+..+++++.....    ...+++.+|+++.-++++++|..+|.+.++.+.
T Consensus       283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            44555555555432211    234555555555555555555555555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.70  E-value=0.22  Score=29.83  Aligned_cols=54  Identities=19%  Similarity=0.107  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHhhCCC------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNR------S-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +|++|+..|+++....-.      + ...++..+.|+...||+..|...+++....+|++.
T Consensus       170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            588999999999875422      1 24567788999999999999999999999999775

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.68  E-value=0.014  Score=36.27  Aligned_cols=51  Identities=24%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      +..|+..|..++.++|++..-+-..|.+...+|++.+|...++.+++++=+
T Consensus       164 p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  164 PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             CchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            457889999999999999999999999999999999999999999999743

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.64  E-value=0.11  Score=25.73  Aligned_cols=40  Identities=13%  Similarity=0.301  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHH---HHHHcCCHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAY---TYHLQDNFSAAITY   42 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~   42 (79)
                      .+|+..++++++..++.+..+..+|.   +|...|+|++++.+
T Consensus        23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665555444443333   34455555555544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.07  Score=32.57  Aligned_cols=45  Identities=18%  Similarity=0.048  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      ++.+|...+..++...|.+..+...++.||...|+++.|...+..
T Consensus       149 ~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         149 DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            467888999999999999999999999999999999887776654

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.51  E-value=0.047  Score=26.70  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .|+.+..++++.+               ..|++++|+.+|..++.
T Consensus         5 ~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           5 DAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence            5666666666665               56777777777776665

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.094  Score=32.55  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .|+.|+.-|+.+++...-+|..-++++.++++.+++..|++.....+.
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            378899999999999999999999999999999999999887665554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.46  E-value=0.16  Score=33.25  Aligned_cols=58  Identities=10%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      .-+..|+.++..-+.|+..|..+.....+.+.+.+.-..|.+++..+|+++..|...+
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA  146 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA  146 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh
Confidence            3456789999999999999999988888888899999999999999999996655443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.45  E-value=0.16  Score=26.65  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++-+|+++.+..+..++++.   ..+..-|.++..+..           .-.++++|.++..+.|..+.....+++-
T Consensus        11 nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen   11 NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            46789999999999988765   677888888866554           3458999999999999886544444433

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.39  E-value=0.13  Score=25.14  Aligned_cols=36  Identities=25%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHccCCCCH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYH-------KALWLKPDDQ   54 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------~al~~~p~~~   54 (79)
                      .|..+..++++.+               +.|++.+|+.+|+       +++...|+++
T Consensus         5 ~A~~~a~~AVe~D---------------~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           5 MARKYAINAVKAE---------------KEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            4555555555554               5556555555555       5555688887

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=95.33  E-value=0.062  Score=25.46  Aligned_cols=20  Identities=20%  Similarity=0.335  Sum_probs=13.0

Q ss_pred             HHHcCCHHHHHHHHHHHHcc
Q 038754           30 YHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~~   49 (79)
                      +-..|++++|+.+|.+++..
T Consensus        15 ~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen   15 ADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            33567777777777766653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.25  E-value=0.51  Score=33.62  Aligned_cols=49  Identities=10%  Similarity=-0.019  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            2 YHEAISCYERALTLL---NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      +++|..++.++....   ..+...|..+-.+|.+.|++++|...|+...+.+
T Consensus       558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            445556665554421   1234555555566666666666666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.21  E-value=0.13  Score=32.48  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYER-ALTLLNRSLSTYAGLAYTYHL---------QDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +.++|+..+.. .....+.+++.+..+|.+|..         ....++|+.+|.+++.++|+..
T Consensus       197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            35789999988 556667899999999999853         2236779999999999997553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.21  E-value=0.099  Score=23.76  Aligned_cols=29  Identities=10%  Similarity=0.013  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYT   29 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   29 (79)
                      +|.+|..+++.+++.+|++..+......+
T Consensus        16 ~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen   16 EYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             -HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            58899999999999999998887765444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.17  E-value=0.21  Score=32.31  Aligned_cols=49  Identities=20%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      .+.|..++....+.-|+++-.++..|..+...|+.++|+..|++++...
T Consensus       249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q  297 (468)
T PF10300_consen  249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ  297 (468)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch
Confidence            4678889999999999999999999999999999999999999999543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.11  E-value=0.075  Score=27.88  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      .-|+.+|++++.+.|..+..++.+|.-+--...|+++..-.+++|.+.
T Consensus        61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            357899999999999999999999988777777888888888888763

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.07  E-value=0.22  Score=32.78  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF   55 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   55 (79)
                      +..|...|++++..+..+...|..++.+-.+..+...|...+++|+.+-|.--.
T Consensus        89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq  142 (677)
T KOG1915|consen   89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ  142 (677)
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence            567889999999999999999999999999999999999999999999986553

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.031  Score=34.82  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            9 YERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ...+++.++....+++..+..+....++++|++++..+....|++......+..+..
T Consensus       298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            334555677788999999999999999999999999999999999866555544443

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.00  E-value=0.086  Score=25.76  Aligned_cols=33  Identities=24%  Similarity=0.144  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      .++|+.++.++++.+               ..|++++|+.+|.++++.
T Consensus         3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~   35 (75)
T cd02680           3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence            456677777776555               568899999999888864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.95  E-value=0.21  Score=34.99  Aligned_cols=52  Identities=17%  Similarity=0.140  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +.+|+.-|++. ...|.-|.-|...|.+|..+|++.+-+++|.-|++..|++|
T Consensus       535 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        535 FTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            56677777754 44566678888899999999999999999999999999998

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.93  E-value=0.18  Score=31.55  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           11 RALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ..++.+|-+.+++..++.++..+|++..|.+..++||-
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf   68 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF   68 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567799999999999999999999999999999974

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.91  E-value=0.23  Score=30.18  Aligned_cols=48  Identities=25%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ++.++..+.+.+..+|.+-..|..+=..|.+.|+...|+..|++.-+.
T Consensus       169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            567778888999999999899999989999999999999999887763

>PLN03077 Protein ECB2; Provisional

Probab=94.88  E-value=0.14  Score=35.07  Aligned_cols=45  Identities=9%  Similarity=0.051  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +..|..+-.++...++.+.+....+++++++|++...+..+...+
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            334444444444444444444444455555554444444443333

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.86  E-value=0.088  Score=20.37  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAY   28 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~   28 (79)
                      ++.+...|+++++..|.++..|..++.
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            456677777777777777777766554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.86  E-value=0.58  Score=29.77  Aligned_cols=65  Identities=15%  Similarity=0.066  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++.+-.++.++-+..++ ........+......|++..|..-..+++...|.++.+......++..
T Consensus       134 ~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~  199 (400)
T COG3071         134 EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR  199 (400)
T ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence            44555555666555332 344555566666666666666666666666666666555444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.85  E-value=0.14  Score=34.08  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      +|++|+....+++...|++..++..--.+..+.++|++|+...++-.
T Consensus        27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~   73 (652)
T KOG2376|consen   27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG   73 (652)
T ss_pred             HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence            47889999999999999999999999999999999999986554444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.82  E-value=0.037  Score=35.62  Aligned_cols=49  Identities=22%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +|++|+...+.-+.+...      .-.++.++|+|+.-.|+++.|++.|++++.+
T Consensus       210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            466777776666665532      2468889999999999999999999887765

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.74  E-value=0.54  Score=28.89  Aligned_cols=58  Identities=10%  Similarity=-0.046  Sum_probs=43.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            7 SCYERALTLLNRSLSTYAGLAYTYHLQDN------------FSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      .-+.+.++.+|+|..+|..+...--..-.            .+.-+..|++||+-+|++...+..+-...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~   75 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEG   75 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45788999999999999999876544432            34567889999999999886555544433

>PRK10941 hypothetical protein; Provisional

Probab=94.67  E-value=0.33  Score=29.29  Aligned_cols=47  Identities=13%  Similarity=0.113  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ..+.++=.+|...++++.|+.+.+..+.++|+++.-+.-.+-++...
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL  228 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL  228 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45677888899999999999999999999999995555455444443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.60  E-value=0.11  Score=25.41  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHccCCCCH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYY-------HKALWLKPDDQ   54 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-------~~al~~~p~~~   54 (79)
                      ..|+.+..++++.+               ..|++.+|+.+|       ..+++..|++.
T Consensus         4 ~~a~~l~~~Ave~D---------------~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~   47 (77)
T cd02683           4 LAAKEVLKRAVELD---------------QEGRFQEALVCYQEGIDLLMQVLKGTKDEA   47 (77)
T ss_pred             HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence            45666666666655               445555555555       45555677654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.56  E-value=0.14  Score=32.55  Aligned_cols=49  Identities=20%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTLLNR----------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |+++|+.+..++.++...          ...+++.++.++..+|+..+|+++.+.+.++
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            456777777777665532          2456778888888888888888888888876

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.51  E-value=0.35  Score=30.24  Aligned_cols=41  Identities=17%  Similarity=0.092  Sum_probs=33.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754           25 GLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus        25 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +.+.-..+.|+.+.|+..|++|+.++|+++.+...++.-..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E  161 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE  161 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH
Confidence            34445678999999999999999999999977766665443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.50  E-value=0.15  Score=25.13  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=16.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           25 GLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        25 ~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +.|..+-..|+.++|+.+|++++..
T Consensus        13 ~kaL~~dE~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679          13 SKALRADEWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHhhhhhcCCHHHHHHHHHHHHHH
Confidence            3344444567777777777777753

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.64  Score=28.57  Aligned_cols=60  Identities=17%  Similarity=-0.011  Sum_probs=45.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHh
Q 038754            8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDE   67 (79)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~   67 (79)
                      .+.+.+..+|++..+-+.+|..+...|+.+.|...+-..++.|-+.  ..++..+-..+.-.
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~  285 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF  285 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence            4566778899999999999999999999999999988888775432  34455555444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.46  E-value=0.2  Score=32.89  Aligned_cols=50  Identities=12%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      ++....+|.+-++-+|.++.+|..+|..-..+|+.+.|...|+-|+....
T Consensus       453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            56677888999999999999999999999999999999999998887654

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=94.32  E-value=0.67  Score=28.17  Aligned_cols=65  Identities=11%  Similarity=0.020  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            5 AISCYERALTLLNRSLSTYAGLAYTYHLQDN----------------------FSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      ....++.=++..|++..++..+|..+....-                      .+.|...+.+++.++|+...+...+..
T Consensus        62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~  141 (277)
T PF13226_consen   62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN  141 (277)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            4455666677889999999999988775433                      556888999999999999988877776


Q ss_pred             HHHHhhh
Q 038754           63 ALVDEGR   69 (79)
Q Consensus        63 ~~~~~~~   69 (79)
                      +....|+
T Consensus       142 ~s~~fge  148 (277)
T PF13226_consen  142 ISAYFGE  148 (277)
T ss_pred             HHhhcCC
Confidence            6655544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.26  E-value=0.35  Score=29.88  Aligned_cols=49  Identities=22%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ..++..+..|...|.+.+|+.+.++++.++|=+...+..+...+...|+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD  328 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD  328 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence            4555667778999999999999999999999887777777777776665

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.25  E-value=0.31  Score=24.09  Aligned_cols=45  Identities=16%  Similarity=0.055  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      .....|.-++..++..+|+..++++++..++.+..+..++.+...
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA   52 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQA   52 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence            345567777899999999999999999998887666555555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.15  E-value=0.88  Score=28.85  Aligned_cols=54  Identities=9%  Similarity=-0.095  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           17 NRSLSTYAGLAYTYHL---QDNFSAAITYYHK-ALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        17 ~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++.+...+.+|.++.+   .|+.++|+..+.. .....+.++..+..++.++++.-..
T Consensus       176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~  233 (374)
T PF13281_consen  176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE  233 (374)
T ss_pred             hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence            4567888899999999   9999999999999 5566778888888899998887443

>PF12854 PPR_1: PPR repeat

Probab=94.13  E-value=0.17  Score=20.56  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      .+...|..+-..|-+.|+.++|++.+++
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3567888889999999999999998864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.09  E-value=0.12  Score=34.30  Aligned_cols=52  Identities=17%  Similarity=0.017  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      -.|+..+..+++++|....+|+.++.++..++++.+|+.+-..+.-..|.+.
T Consensus       428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            3578888999999999999999999999999999999998877777777554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.04  E-value=0.65  Score=26.98  Aligned_cols=33  Identities=15%  Similarity=-0.037  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      .--..|.++...|+..+|...|++++..+++++
T Consensus       161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         161 VAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            356689999999999999999999999985544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.03  E-value=0.53  Score=25.91  Aligned_cols=45  Identities=13%  Similarity=-0.037  Sum_probs=31.8

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            6 ISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ...+....+.+..+|..+..+|.+|.+.|+.+++-..+.+|.+..
T Consensus       106 dki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen  106 DKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            344555555566789999999999999999999999999987654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.02  E-value=0.24  Score=33.92  Aligned_cols=53  Identities=21%  Similarity=0.011  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLN------RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++|+..+++++....      ....++..+|.++...|+.++|...+.+++.+....
T Consensus       706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            36788888888887632      234678899999999999999999999999986543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.02  E-value=0.37  Score=35.31  Aligned_cols=51  Identities=20%  Similarity=0.080  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      +++|.++++..++.-...+..|..+|..++.+++-+.|...+.+||+.-|.
T Consensus      1546 ~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            567888888888888788889999999988888888888889999988887

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.96  E-value=0.16  Score=19.59  Aligned_cols=29  Identities=17%  Similarity=0.028  Sum_probs=24.0

Q ss_pred             CCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754           34 DNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus        34 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      |+.+.+...|++++...|.++..+..+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56788999999999999988877766554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.79  E-value=0.41  Score=29.00  Aligned_cols=51  Identities=24%  Similarity=0.124  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHccCCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF-----------------SAAITYYHKALWLKPD   52 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~A~~~~~~al~~~p~   52 (79)
                      +++++..|..+++.+|....+|+.+|..+...=+.                 ..|+..|-+++.+.|+
T Consensus       274 ~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  274 SDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            45667777777777777777777777766543111                 2367777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.69  E-value=0.37  Score=27.94  Aligned_cols=51  Identities=18%  Similarity=0.076  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhhh
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD----QFCTEMLSLALVDEGR   69 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~   69 (79)
                      +++...+.+|..|. .-+...++..+.++|.+.+.+    +.+...++.+....++
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            57899999987765 778999999999999986644    4666666666665544

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=93.63  E-value=0.45  Score=29.61  Aligned_cols=43  Identities=26%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      -+|+.+++.+++.+|.++.....+..+|..+|-...|...|..
T Consensus       200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            4688889999999999999999999999999999999998843

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.50  E-value=0.29  Score=23.63  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++|+.++.++++.+               ..|++++|+.+|.+++.
T Consensus         4 ~~A~~l~~~Av~~D---------------~~g~y~eA~~~Y~~aie   34 (75)
T cd02678           4 QKAIELVKKAIEED---------------NAGNYEEALRLYQHALE   34 (75)
T ss_pred             HHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHH
Confidence            45566666665544               55666666666655554

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=0.31  Score=30.80  Aligned_cols=45  Identities=16%  Similarity=0.136  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      |++|....++++++++.++=+....+.++...+++.++.++..+.
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            678999999999999999888888999998999988888776554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=0.46  Score=29.12  Aligned_cols=56  Identities=14%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            2 YHEAISCYERALTLL------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      .+.|..+|+.+-+..      ...-.++.+.+.+|.-.+++.+|-..|.+.+..||+++.+-
T Consensus       228 ~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  228 IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence            345556666333222      23567888899999999999999999999999999998443

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.34  E-value=0.3  Score=23.71  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ..+|+.+..++++.+               ..|++++|+.+|..++.
T Consensus         3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale   34 (75)
T cd02684           3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ   34 (75)
T ss_pred             HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence            356666677766555               44666666666665554

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.28  E-value=0.81  Score=27.47  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHhhC-CCC-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTLL-NRS-------LSTYAGLAYTYHLQD-NFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~   49 (79)
                      +++.|..++.++-... ..+       +..+++.|......+ +++.|..++++++.+
T Consensus         8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            4667888888877655 222       468899999999999 999999999999988

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.25  E-value=0.68  Score=26.10  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ..++..+|..|.+.|+.+.|+++|.++.....+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~   68 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS   68 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence            468889999999999999999999998876433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.16  E-value=1.1  Score=30.84  Aligned_cols=50  Identities=18%  Similarity=0.095  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ++++|...++++++..+..     ..++..+|.++...|++++|...+++++...
T Consensus       467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~  521 (903)
T PRK04841        467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA  521 (903)
T ss_pred             CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4678888888888754432     2456778888999999999999999998763

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.09  E-value=1  Score=29.42  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC-CHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLN------RSLSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPD-DQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+.++.+-+.+..      ....+++.+|.+|...|..+.|+.+.++.+++     ||. -..++.++.+.....|.
T Consensus       291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            5677887777666542      35678888999999999999999988888876     332 23567777777777766


Q ss_pred             cCC
Q 038754           70 HGI   72 (79)
Q Consensus        70 ~~~   72 (79)
                      ...
T Consensus       371 ~ds  373 (639)
T KOG1130|consen  371 EDS  373 (639)
T ss_pred             Ccc
Confidence            544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.99  E-value=0.71  Score=28.96  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD-DQFCTEMLSLAL   64 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~   64 (79)
                      ..+++.....+.+.|.++.|+++.+-.+.+||. ||.....+.+.+
T Consensus       103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~  148 (360)
T PF04910_consen  103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY  148 (360)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            346677777888999999999999999999998 885554444443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=92.97  E-value=0.4  Score=23.05  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=10.4

Q ss_pred             HHHcCCHHHHHHHHHHHHc
Q 038754           30 YHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~   48 (79)
                      +-..|++++|+.+|..++.
T Consensus        18 ~d~~g~~~eAl~~Y~~a~e   36 (77)
T smart00745       18 ADEAGDYEEALELYKKAIE   36 (77)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            3345666666655555543

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.77  E-value=0.34  Score=23.60  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .+|...+.++++.+               ..|++++|..+|..++.
T Consensus         4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~   34 (75)
T cd02677           4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVD   34 (75)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHH
Confidence            56777777776665               33666666666655554

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=92.42  E-value=0.31  Score=18.58  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .|..+-.+|.+.|++++|...|++-.+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            356677889999999999999987654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.33  E-value=1.1  Score=26.91  Aligned_cols=40  Identities=18%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ..+..|++-|......|++.+|+..|+.+....|..+...
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~   71 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSE   71 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccH
Confidence            3678999999999999999999999999999999888443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.31  E-value=1.6  Score=26.70  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +.|+.....++.++|.+..+|...-.++..++ +..+-+.++...+.-+|.|...|-.......-.+
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~  126 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG  126 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence            45777777777777777777776666664443 4556677777777777777766655555555444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.19  E-value=1.7  Score=26.55  Aligned_cols=51  Identities=22%  Similarity=0.141  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ...++..++..+...|+++.++..+++.+.++|-+...+..+-.++...|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~  202 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR  202 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence            467888899999999999999999999999999998777776666655544

>smart00671 SEL1 Sel1-like repeats

Probab=92.13  E-value=0.39  Score=19.09  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHccC
Q 038754           21 STYAGLAYTYHLQ----DNFSAAITYYHKALWLK   50 (79)
Q Consensus        21 ~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~   50 (79)
                      .+.+.+|.+|..-    .+...|+.+|+++.+..
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence            4667788887532    37888999999887643

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.83  E-value=0.73  Score=22.08  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=10.0

Q ss_pred             HcCCHHHHHHHHHHHHc
Q 038754           32 LQDNFSAAITYYHKALW   48 (79)
Q Consensus        32 ~~~~~~~A~~~~~~al~   48 (79)
                      ..|++++|+.+|..++.
T Consensus        18 ~~g~~~~Al~~Y~~a~e   34 (75)
T cd02656          18 EDGNYEEALELYKEALD   34 (75)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            44666666666655554

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.76  E-value=1.4  Score=29.18  Aligned_cols=46  Identities=15%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      +.++|++.++..++..|.  .-.++.++-.++...+.|.++...+.+=
T Consensus       274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            357899999999998875  5679999999999999999998887663

The molecular function of this protein is uncertain.

>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A

Probab=91.50  E-value=0.54  Score=19.47  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHccCC
Q 038754           20 LSTYAGLAYTYHLQDNFS---AAITYYHKALWLKP   51 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~---~A~~~~~~al~~~p   51 (79)
                      +.+.+++|+++.+.....   +.+..++..++.+|
T Consensus         1 ~qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p   35 (35)
T PF14852_consen    1 PQTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP   35 (35)
T ss_dssp             -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred             CcchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence            356788999998888764   47778877776654

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=91.44  E-value=0.52  Score=19.12  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHccC
Q 038754           20 LSTYAGLA--YTYHLQD-----NFSAAITYYHKALWLK   50 (79)
Q Consensus        20 ~~~~~~~~--~~~~~~~-----~~~~A~~~~~~al~~~   50 (79)
                      +.+.+.+|  .+|..-.     ++..|+.+|+++.+.+
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g   38 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG   38 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence            45677788  5444333     3788999999887653

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.42  E-value=0.89  Score=23.73  Aligned_cols=43  Identities=16%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      --|..+-.+|..|...|+.+.|++.|+.--.+-|.....+..+
T Consensus        70 vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL  112 (121)
T COG4259          70 VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL  112 (121)
T ss_pred             CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence            3578889999999999999999999999999999887555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.37  E-value=1.9  Score=29.36  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHhhh
Q 038754            8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ--FCTEMLSLALVDEGR   69 (79)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~   69 (79)
                      .....++.+|.++..+...+......|+..+|+.|+..++-..|.+.  .+...++.++.+.|.
T Consensus       201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~  264 (886)
T KOG4507|consen  201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF  264 (886)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc
Confidence            45667778888888887776666889999999999999999988765  445556777766654

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=91.34  E-value=1  Score=24.00  Aligned_cols=40  Identities=15%  Similarity=0.142  Sum_probs=31.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754           24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus        24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ..+|..+...|++.+|..+|-+|+..-|++.....-+...
T Consensus        67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~t  106 (121)
T PF02064_consen   67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQKT  106 (121)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence            4578889999999999999999999999877555444443

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.31  E-value=1.4  Score=23.85  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNR------------SLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |++|..-|+++++....            +..++-.++.++..+|+|++++..-.++|..
T Consensus        25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            67788888888887643            3568888899999999999988888877753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.29  E-value=2.1  Score=28.02  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      .-..+..||.++++++.|+....+++-++|..+
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            456788999999999999999999999999887

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.03  E-value=2.2  Score=26.51  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      .++|+.-|++++++.+..    ..++-.+-.++++++++.+.+..|.+.+..
T Consensus        43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY   94 (440)
T KOG1464|consen   43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY   94 (440)
T ss_pred             HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            578999999999999864    246666777889999999999999888754

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.87  E-value=2.2  Score=25.40  Aligned_cols=63  Identities=22%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDD-QFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~   66 (79)
                      ..+|..+|+.+  .+..++.+.+++|..|..    ..+..+|..+|+++....... ..+...++..+..
T Consensus        93 ~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~  160 (292)
T COG0790          93 KTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS  160 (292)
T ss_pred             HHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Confidence            46788888844  445678899999999876    448999999999999886544 2334455554443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.87  E-value=2.5  Score=25.96  Aligned_cols=66  Identities=6%  Similarity=-0.043  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFS-AAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      .+=+.++.++++-+|++..+|...-.+....|++. .-+...+..+..+..|.-+|....-++...+
T Consensus        95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~  161 (318)
T KOG0530|consen   95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK  161 (318)
T ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence            45577888999999999999999999989999888 7888899999999888877877777766554

>PF13041 PPR_2: PPR repeat family

Probab=90.76  E-value=0.78  Score=19.94  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      +...|..+-..|.+.|++++|.+.|++-.+..
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g   33 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG   33 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence            35677788888999999999999999988653

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.70  E-value=1.6  Score=23.59  Aligned_cols=47  Identities=13%  Similarity=0.015  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            3 HEAISCYERALTLLNRSLS----TYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +.|+.+|.+-=+++.+...    +-++.|.++..+|+.++|+..|+.+-+.
T Consensus        79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4567777777778877654    4467888999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.69  E-value=1.9  Score=24.21  Aligned_cols=50  Identities=12%  Similarity=-0.149  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +|.+|+..++.+.+..|..+.+--.++.|++.++++.-=.. -..++...+
T Consensus        59 ~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~  108 (160)
T PF09613_consen   59 DWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRY-ADEVLESGA  108 (160)
T ss_pred             CHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCC
Confidence            58899999999999999999999999999999999876432 344555554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.58  E-value=3.1  Score=27.04  Aligned_cols=53  Identities=13%  Similarity=-0.033  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ...|.....+++++.|+...+-..-+..+++.|+..++-..++.+.+..|-..
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence            45677888899999999988888899999999999999999999999998554

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=90.57  E-value=1.1  Score=28.04  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      +.+++.-|...-+.|..-+|+..|+.|+++.|+-.....
T Consensus        19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r   57 (366)
T KOG2997|consen   19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR   57 (366)
T ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence            445566666667889999999999999999997665544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.50  E-value=1.2  Score=27.65  Aligned_cols=44  Identities=32%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      +.+|..+.+++++++|-+-..+..+-..+...|+--.++..|++
T Consensus       295 ~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         295 PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            67899999999999999999999999999999998888777654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.42  E-value=2.5  Score=25.20  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p   51 (79)
                      .|+.+|.++-...  ++.+.+.+|.+|..    ..++.+|..+|.++-....
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            4555555554444  45555555555533    3355556666655555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.17  E-value=0.77  Score=29.42  Aligned_cols=48  Identities=21%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            3 HEAISCYERALTLL------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         3 ~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      .+|.++++++.++.      +-.......+|.+|...|+.+.|..-|+.|...-
T Consensus       223 gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  223 GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            46788888887764      2356788899999999999999999999998764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.07  E-value=0.35  Score=30.88  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .+...++..|.+|..+++|.+|++.|...+.
T Consensus       162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  162 CHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             hheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999998875

>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []

Probab=89.94  E-value=0.85  Score=29.13  Aligned_cols=46  Identities=17%  Similarity=0.128  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN------------FSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~   49 (79)
                      +..|+.+++++..  .++|..|..+|.++..+|+            |.+|..++.+|=..
T Consensus       334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a  391 (404)
T PF12753_consen  334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA  391 (404)
T ss_dssp             HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence            3578888888866  5678899999999888776            55556555555443

In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.83  E-value=4.4  Score=27.41  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHccCCCCHHHHHHH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYY-HKALWLKPDDQFCTEML   60 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~l   60 (79)
                      .+.-..+.++..+|.++.+..++|.++...|....+...+ +.+....|++......+
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          85 LAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             hHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            4455667788888888889998888877666666555444 44888888887665555

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.08  E-value=5.7  Score=29.80  Aligned_cols=46  Identities=9%  Similarity=0.098  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      +...|.-.+...|.-.+.|..+...-.+.|+..-+...|++++.+.
T Consensus      1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            3344555555555555555555555555555555555555555443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=88.94  E-value=0.83  Score=17.60  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           23 YAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        23 ~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |..+-..|.+.|++++|...|.+..+.
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            556667889999999999999887653

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.90  E-value=2.7  Score=23.42  Aligned_cols=41  Identities=17%  Similarity=0.067  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAIT   41 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~   41 (79)
                      +|.+|+..++.+.+..+..+.+.-.++.|++-.||..-=..
T Consensus        59 ~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~   99 (153)
T TIGR02561        59 NYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH   99 (153)
T ss_pred             CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence            48899999999999999999999999999999999877543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.83  E-value=3.3  Score=25.14  Aligned_cols=49  Identities=16%  Similarity=0.040  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754           20 LSTYAGLAYTYHLQ------DNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus        20 ~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ..++..+|.....+      +..++++..|..+++++|+...++..++......-
T Consensus       252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~  306 (352)
T PF02259_consen  252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL  306 (352)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence            45777778777777      88999999999999999999877777776666543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=86.87  E-value=2.6  Score=28.32  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            4 EAISCYERALTLL-----NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         4 ~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .++.+|.+++...     ..+...|..+|-.|++.+++.+|+..|-.+-.
T Consensus       297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~  346 (618)
T PF05053_consen  297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD  346 (618)
T ss_dssp             -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666543     34567788899999999999999999887754

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.56  E-value=6.6  Score=26.17  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD---NFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~   49 (79)
                      +..|+.++.++-+.+  ++.+.+.+|.+|..-.   ++..|..+|..|-+.
T Consensus       309 ~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~  357 (552)
T KOG1550|consen  309 YEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA  357 (552)
T ss_pred             HHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence            345666666665554  4556666666665544   455666666666554

>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus

Probab=86.45  E-value=6.3  Score=24.97  Aligned_cols=62  Identities=13%  Similarity=0.062  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHH
Q 038754            4 EAISCYERALTLLNR---SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALV   65 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~   65 (79)
                      +.+..+...++.=|+   .+..|..++.++...|.+++.+..|++|+....... ..+..+.+.+.
T Consensus       121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~  186 (353)
T PF15297_consen  121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK  186 (353)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            445556666666664   467899999999999999999999999999998865 22333444444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=86.35  E-value=1.3  Score=17.11  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .|..+-.++.+.|+++.|...|+.-.+
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567777889999999999999887654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.24  E-value=2.5  Score=23.15  Aligned_cols=38  Identities=11%  Similarity=-0.149  Sum_probs=28.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA   38 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   38 (79)
                      ++.-|..+.+.++..+|++..+....+.+|.++|.-.+
T Consensus        85 d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   85 DYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             -HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            35678889999999999999999999998887776544

>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=85.95  E-value=5.8  Score=26.55  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ....+|.--+..|+|+-+.....+++--+|+|..++...++++...|-..
T Consensus       454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa  503 (655)
T COG2015         454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA  503 (655)
T ss_pred             HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence            34556677789999999999999999999999999999999998877543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=85.89  E-value=5.2  Score=27.04  Aligned_cols=45  Identities=11%  Similarity=0.199  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      ++....|++.+..-|.++.+|......-....+|+.....|.++|
T Consensus        36 ~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   36 DKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555554444444

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.47  E-value=4.9  Score=27.29  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPD-DQFCTEMLSLAL   64 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~   64 (79)
                      +++..-..+.+.|.++.|.++++-.++++|. ||.+...+.+.+
T Consensus       344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~  387 (665)
T KOG2422|consen  344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY  387 (665)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence            3333344456889999999999999999998 886665555444

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=85.26  E-value=1.6  Score=17.06  Aligned_cols=26  Identities=12%  Similarity=0.134  Sum_probs=14.8

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHH
Q 038754            6 ISCYERALTLLNRSLSTYAGLAYTYH   31 (79)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~   31 (79)
                      +.+...++..+|.+..+|..+-.+..
T Consensus         3 l~~~~~~l~~~pknys~W~yR~~ll~   28 (31)
T PF01239_consen    3 LEFTKKALEKDPKNYSAWNYRRWLLK   28 (31)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccccHHHHHHHHHH
Confidence            44555666666666666665554443

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.01  E-value=3.4  Score=24.79  Aligned_cols=26  Identities=15%  Similarity=0.013  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYY   43 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~   43 (79)
                      .+|..+..+|..|.+-+++.+|..+|
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            58999999999999999999999777

; PDB: 3LKU_E 2WPV_G.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.76  E-value=6.2  Score=27.46  Aligned_cols=58  Identities=21%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      +|.+++.-+.-++...|....++...+.+|...+..+-|++........+|+++.+..
T Consensus       108 ~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e  165 (748)
T KOG4151|consen  108 EYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE  165 (748)
T ss_pred             chhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence            3567777788888999999999999999999999999999998888899999864443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.52  E-value=7.9  Score=25.80  Aligned_cols=64  Identities=20%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL-----LNRSLSTYAGLAYTYHLQD-----NFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++.|+.++..+...     ....+.+.+.+|.+|.+..     ++..|+.+|.++-.+...+.  ...++.+...
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a--~~~lg~~~~~  337 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA--QYLLGVLYET  337 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH--HHHHHHHHHc
Confidence            467888888888761     1126678889999998854     67889999999998875544  4455555443

>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit

Probab=84.43  E-value=4.2  Score=22.56  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=31.4

Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754           24 AGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus        24 ~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      -.+|..+...| +..++..+|-+|+..-|++.....-+..
T Consensus        94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~  133 (148)
T TIGR00985        94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ  133 (148)
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            35788899999 9999999999999999987755544443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.21  E-value=7.2  Score=23.70  Aligned_cols=67  Identities=16%  Similarity=0.026  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH--HHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT--EMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~   68 (79)
                      |.+|+..|+++.+..-+++       .-++..|.|+.-..+.-.+...+++-..++|.+...+  ..+.+++....
T Consensus       170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie  245 (288)
T KOG1586|consen  170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE  245 (288)
T ss_pred             HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence            6788888888877665543       4556678888888999999999999999999876333  34455544443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=84.14  E-value=4.7  Score=21.47  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754            4 EAISCYERALT--LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus         4 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      ++...|..+..  +....+..|-..|..+...|++.+|...|+.++
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            34455555444  445678888889999999999999999988765

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.65  E-value=12  Score=25.17  Aligned_cols=36  Identities=17%  Similarity=0.024  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHccCCCCH
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYH--------KALWLKPDDQ   54 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~--------~al~~~p~~~   54 (79)
                      .+..++..|..+...|+.+.|...|.        .+...++.+.
T Consensus       403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            48899999999999999999999998        4445555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.53  E-value=7.9  Score=22.93  Aligned_cols=33  Identities=12%  Similarity=0.025  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ..+...+|.-|+..|++++|...|+.+....-.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~  210 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR  210 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            456678999999999999999999999765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=82.40  E-value=4.3  Score=21.08  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .-+..++..|...|.+++|++.+.+...
T Consensus        40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   40 GKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            4578899999999999999999988877

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.14  E-value=9  Score=23.31  Aligned_cols=54  Identities=20%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+|+.+-+--..      .-.++..-+..-..+++|..|+..|+++..-.-+++
T Consensus       129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            356777777777553321      124555556666789999999999999988777766

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=81.82  E-value=5.2  Score=27.67  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +.-...|++++++.-..|..-.|+|..+-...-++++.+.|++.+.+-|
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            4556778999999988999999999999888899999999999998854

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.81  E-value=9.6  Score=23.38  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=14.0

Q ss_pred             HHHcCCHHHHHHHHHHHHccC
Q 038754           30 YHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ....-++++|++.|++++.+-
T Consensus       120 ~lenv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  120 ALENVKPDDALQLYQRALAVV  140 (308)
T ss_pred             HhhcCCHHHHHHHHHHHHHHH
Confidence            345666777777777777653

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=81.18  E-value=3.5  Score=17.88  Aligned_cols=32  Identities=13%  Similarity=-0.100  Sum_probs=27.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 038754            8 CYERALTLLNRSLSTYAGLAYTYHLQDNFSAA   39 (79)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A   39 (79)
                      .|..++-.+|++...+..++..+...|+...|
T Consensus         4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra   35 (42)
T TIGR02996         4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA   35 (42)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence            46678889999999999999999999999654

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>PF13830 DUF4192: Domain of unknown function (DUF4192)

Probab=80.38  E-value=11  Score=23.24  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            3 HEAISCYERALTLLNRS--LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      ..+...+..+.+.-|..  +.++..+|.+.+..|+-..|-..++.++..+|++.++.
T Consensus       255 ~~a~~lw~~~~r~~~~~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~la~  311 (324)
T PF13830_consen  255 QAAERLWRALARRLPGPWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHSLAQ  311 (324)
T ss_pred             hHHHHHHHHHHHhcCCccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCcHHH
Confidence            35666677777776654  67888999999999999999999999999999987554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.15  E-value=4.1  Score=26.46  Aligned_cols=31  Identities=23%  Similarity=0.101  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      +++..|..+|.....+|+++-|..+|+++-.
T Consensus       345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            5789999999999999999999999988644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=80.11  E-value=13  Score=23.82  Aligned_cols=39  Identities=15%  Similarity=-0.041  Sum_probs=33.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +-..+...|..+.++|+..+|...|++++.+.++.....
T Consensus       364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~  402 (415)
T COG4941         364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA  402 (415)
T ss_pred             ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence            456778889999999999999999999999998876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
3hym_B	330	Insights Into Anaphase Promoting Complex Tpr Subdom		1e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-04
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-04

>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F    L 
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLG 311

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P++    + L 
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Query: 62 LALVDEG 68
           A   +G
Sbjct: 85 NAKQKQG 91

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P++    + L 
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 62  LALVDEG 68
            A   +G
Sbjct: 119 NAKQKQG 125

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          Y EAI  Y++AL L  RS   +  L   Y+ Q ++  AI YY KAL L P        L 
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 62 LALVDEGRHGIDPKIEF 78
           A   +G +  D  IE+
Sbjct: 77 NAYYKQGDY--DEAIEY 91

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P++    + L 
Sbjct: 59  YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Query: 62  LALVDEG 68
            A   +G
Sbjct: 119 NAKQKQG 125

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP 51
          Y EAI  Y++AL L  RS   +  L   Y+ Q ++  AI YY KAL L P
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +AI  Y++AL L   + S +  L   Y+ Q ++  AI YY KAL L P++
Sbjct: 25 YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	9e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	5e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-04

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.5 bits (163), Expect = 5e-15
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y EA+  + +AL L+ ++ STY+ + Y + L  NF  A+ Y+H AL L+ DD F   ML 
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 62  LALVDEGRH 70
             +      
Sbjct: 312 HCIEMYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + +A++ Y  A  L+         +   Y L +N   A  ++ +AL + P+D
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 8/50 (16%), Positives = 16/50 (32%)

Query: 4   EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
            A     +A TL       +    +++ ++     A+  Y  A  L    
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 2   YHEAISCYERALTLLNRSL---------STYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           +  A   +  AL  +                  L +       ++ A+ Y+ +AL L P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 53  D 53
           +
Sbjct: 269 N 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 21/67 (31%)

Query: 4  EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
           + +    ++  L  +L     LA  ++   +F          +   P    C  +    
Sbjct: 6  PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 64 LVDEGRH 70
          LV+  + 
Sbjct: 66 LVELNKA 72

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 35.0 bits (81), Expect = 7e-04
 Identities = 6/52 (11%), Positives = 12/52 (23%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          +          +       S       T    +  +      HK + L P +
Sbjct: 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 6/53 (11%), Positives = 14/53 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
              A   + +AL++          +         +  A  ++  AL       
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y  AI    + L L     + +  +A  Y  +     AIT+ H++L + P++   +++L 
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591

Query: 62  LALVD 66
            AL +
Sbjct: 592 RALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 13/52 (25%), Positives = 18/52 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + +AIS Y  A  L   +   Y  L   +    N   A  Y   +  L   D
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA   + ++ T+  +    + G A+++ ++     AI+ Y  A  L    
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 2   YHEAISCYERALTLLNRSLS-------TYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              AI+ ++ AL L+ ++ S       T+A L + Y     + AAI   ++ L L  +D
Sbjct: 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 11/69 (15%), Positives = 22/69 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
                  Y  ++  L +S       A T  ++  F   +    K L + P +     +  
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346

Query: 62  LALVDEGRH 70
            +L + G  
Sbjct: 347 ASLHESGEK 355

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 10/69 (14%), Positives = 21/69 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
            ++        +        T+  +   Y   +  S A  Y+ K+  + P         +
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 62  LALVDEGRH 70
            +   EG H
Sbjct: 415 HSFAIEGEH 423

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 5/52 (9%), Positives = 17/52 (32%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + + ++   + L +   +L  Y     + H     +      +  +   P+ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 9/63 (14%), Positives = 17/63 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A    + +  L          L      + +   AI ++  AL L    Q   +  +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 62  LAL 64
              
Sbjct: 517 ATW 519

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.6 bits (116), Expect = 3e-09
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 2  YHEAISCYERALTL---LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58
            +A+  YE+A+            Y GL  T+     +  A       +   P+ Q    
Sbjct: 6  EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65

Query: 59 MLSLALVDEGRH 70
            ++ L + GR+
Sbjct: 66 FYAMVLYNLGRY 77

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 6/52 (11%), Positives = 14/52 (26%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +A +     +       +     A   +    +   +    K +    DD
Sbjct: 43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
            EA+  Y +AL +     + ++ LA     Q     A+ +Y +A+ + P        + 
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 62 LALVDEGRH 70
            L +    
Sbjct: 85 NTLKEMQDV 93

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 13/69 (18%), Positives = 25/69 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA+  Y+ A+ +       Y+ +  T     +   A+  Y +A+ + P        L+
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 62  LALVDEGRH 70
               D G  
Sbjct: 119 SIHKDSGNI 127

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A+ CY RA+ +       ++ LA  +    N   AI  Y  AL LKPD       L+
Sbjct: 93  VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

Query: 62  LALVDEGRH 70
             L      
Sbjct: 153 HCLQIVCDW 161

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 23 YAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH 70
             LA     Q N   A+  Y KAL + P+       L+  L  +G+ 
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQ-DNFSAAITYYHKALWLKPDDQFCTEML 60
             +A+  YE+ L L   +L+    L   Y+L  +     +   +K L      Q+     
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 61  SLALVDEGRH 70
            L+ +   R+
Sbjct: 164 GLSKLFTTRY 173

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 4/52 (7%), Positives = 12/52 (23%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             + +    + L+   +          +      +  A     K +   P  
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y +A   Y+  L     ++      A     +     A+  Y K L L+ D+
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 2   YHEAISCYERALTL----------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHK 45
             +A+S + + + L                   S      LA  Y    N+  A  +Y +
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 46  ALWLKPDDQFCTEMLSLALVDEGRH 70
            L   P++  C E  +   V  G+ 
Sbjct: 80  LLQKAPNNVDCLEACAEMQVCRGQE 104

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 2   YHEAISCYERALTLLNRSLST--------YAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              A   YE+ + +     +            +AY Y +  +   A   +   L L P +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254

Query: 54  QFCTEMLSLALVDEGRH 70
           +   + L + L     H
Sbjct: 255 KKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           +  AI   E+ +         +  L   Y+    +  A + + K L LKP+ 
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              AI  Y+ A+      L  Y  +   ++ + NF  AI Y  K +     D
Sbjct: 90  DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 3/72 (4%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITY---YHKALWLKPDDQFCTE 58
          Y EAI  + +       S   Y   A  Y+    +  A      Y   +          E
Sbjct: 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 59 MLSLALVDEGRH 70
               L+ +G+ 
Sbjct: 79 YYGKILMKKGQD 90

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN---FSAAITYYHKALWLKPDD 53
           Y +A S + + L L       Y   A     QD       A  YY K + +    
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 20/69 (28%), Positives = 27/69 (39%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA  CY  AL L      +   LA     Q N   A+  Y KAL + P+       L+
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 62  LALVDEGRH 70
             L  +G+ 
Sbjct: 347 SVLQQQGKL 355

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA+  Y +AL +     + ++ LA     Q     A+ +Y +A+ + P  
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 20/69 (28%), Positives = 23/69 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EAI  Y  AL L    +  Y  LA       +   A+  Y  AL   PD       L 
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 62  LALVDEGRH 70
             L   GR 
Sbjct: 143 NLLKALGRL 151

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 17/69 (24%), Positives = 25/69 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              AI  Y RA+ L       Y  LA     + + + A   Y+ AL L P        L+
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 62  LALVDEGRH 70
               ++G  
Sbjct: 313 NIKREQGNI 321

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 5e-07
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA +CY +A+         ++ L   ++ Q     AI ++ KA+ L P+ 
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           +  A++ Y RAL+L       +  LA  Y+ Q     AI  Y +A+ L+P  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 18/69 (26%), Positives = 27/69 (39%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              AI  +E+A+TL    L  Y  L         F  A+  Y +AL L P+       L+
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 62  LALVDEGRH 70
               ++G  
Sbjct: 245 CVYYEQGLI 253

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 24/69 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              +      A+         Y+ L   Y  +     AI +Y  AL LKPD       L+
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 62  LALVDEGRH 70
            ALV  G  
Sbjct: 109 AALVAAGDM 117

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 12/69 (17%), Positives = 18/69 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A+  Y  AL          + L            A   Y KA+  +P+       L 
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 62  LALVDEGRH 70
                +G  
Sbjct: 177 CVFNAQGEI 185

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 3e-06
 Identities = 6/69 (8%), Positives = 16/69 (23%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          +  A     +       +      L+  +        +  +   A+   P        L 
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 62 LALVDEGRH 70
              + G+ 
Sbjct: 75 NVYKERGQL 83

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 7e-08
 Identities = 10/69 (14%), Positives = 20/69 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y +A   ++    L +     + GL         +  AI  Y     +   +       +
Sbjct: 37  YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96

Query: 62  LALVDEGRH 70
             L+  G  
Sbjct: 97  ECLLQXGEL 105

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 12/51 (23%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y  AI  Y     +           A         + A +    A  L  +
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 8/69 (11%), Positives = 17/69 (24%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
                       + + +L     LA+  +    +  A   +     L   D      L 
Sbjct: 3  LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62

Query: 62 LALVDEGRH 70
                G++
Sbjct: 63 ACRQAMGQY 71

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 10/71 (14%), Positives = 18/71 (25%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              +     A+    +    +  LA       + +A      + L L P        L 
Sbjct: 5  GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 62 LALVDEGRHGI 72
               + RH  
Sbjct: 65 RVRWTQQRHAE 75

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           + EA    ++A             L +         AA   Y +A  L P++ + T  L 
Sbjct: 73  HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

Query: 62  LAL 64
              
Sbjct: 133 NWR 135

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 19/69 (27%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
                   +R L L        A L      Q   + A     +A    P+       L 
Sbjct: 39  TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98

Query: 62  LALVDEGRH 70
            AL D G+ 
Sbjct: 99  HALEDAGQA 107

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           + EA +  E+A  L  RS     GLA     Q++   AIT + ++  L    +   + ++
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 62  LA 63
            A
Sbjct: 491 FA 492

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 13/69 (18%), Positives = 27/69 (39%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y +A   +++A  L   ++  Y  LA   + ++ F    T + +A    P+        +
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 62  LALVDEGRH 70
             L D+   
Sbjct: 380 EILTDKNDF 388

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             E  + +++AL L + + S Y        +  N+  A   + KA  L P++
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 7/52 (13%), Positives = 18/52 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + +  + +  A      +       A     +++F  A+  Y  A+ L+   
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              A    ++A+ L    +++Y  +A     +++ +    Y+ KAL L  ++
Sbjct: 253 PLGAHEDIKKAIEL-FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +AI  Y  AL L       Y+ L+  Y    +    +    KAL LKPD 
Sbjct: 22 YDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 8/53 (15%), Positives = 16/53 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           + E +        L  +   +         L+++   A     KA+ L P   
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYH---------LQDNFSAAITYYHKALWLKPD 52
           + +A+  Y+ A+ L N+    Y G+A               +NF  A     KA  L P 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 53  DQFCTEMLSLALVDEGRH 70
            +     L+   + +   
Sbjct: 448 SEQAKIGLAQMKLQQEDI 465

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 35.1 bits (81), Expect = 9e-04
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHK-ALWLKPDDQFCTEML 60
             + +    +AL L           A        F+ A+      +L    +D     ML
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 61  SLALVDEGRHGIDPKIE 77
              L  +    +  K  
Sbjct: 115 ERNLNKQAMSKLKEKFG 131

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 21/69 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA   +E            +  L  T    +    AI   + A  L P D      L+
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 62  LALVDEGRH 70
           ++  +E   
Sbjct: 93  VSHTNEHNA 101

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
              AI     A  L  + ++ +A LA ++  + N +AA+      L  +P 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             +AIS  + A  L N +   +  ++  Y+   +   +++   + L L  D + C     
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 62  LA 63
             
Sbjct: 253 QV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EAI      L +   +++     A  Y +++ +  AI  Y  A     +DQ   E L 
Sbjct: 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 62  LALVDEGR 69
            A     +
Sbjct: 371 KAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 23/69 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y  AI+  ++ L +           A  +  +     AI+    A  LK D+      +S
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218

Query: 62  LALVDEGRH 70
                 G H
Sbjct: 219 TLYYQLGDH 227

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
            +A+S +  A+     +   Y   A  +       AA+    K + LK D 
Sbjct: 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 7/52 (13%), Positives = 14/52 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              A+    + + L     +      +    Q     A   + K L   P +
Sbjct: 76  SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2   YHEAISCYERALTL----LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y +A S YE  +         ++ +   + + +   +    AI    + L ++PD+
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 328

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 15/84 (17%)

Query: 2   YHEAISCYERALTL---------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKA 46
             EA   +++ L                  +  +      A       +++AAI +  K 
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 47  LWLKPDDQFCTEMLSLALVDEGRH 70
           L +   D    E+ +   + EG  
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEP 193

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EAI      L +   +++     A  Y +++ +  AI  Y  A     +DQ   E L 
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 62  LALVDEGR 69
            A     +
Sbjct: 348 KAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 10/62 (16%), Positives = 24/62 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             +AIS  + A  L + +   +  ++  Y+   +   +++   + L L  D + C     
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 62  LA 63
             
Sbjct: 230 QV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 23/69 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y  AI+  ++ L +           A  +  +     AI+    A  LK D+      +S
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 62  LALVDEGRH 70
                 G H
Sbjct: 196 TLYYQLGDH 204

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
            +A+S +  A+     +   Y   A  +       AA+    K + LK D 
Sbjct: 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2   YHEAISCYERALTL----LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y +A S YE  +         ++ +   + + +   +    AI    + L ++PD+
Sbjct: 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 8/53 (15%), Positives = 15/53 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
              A+    + + L     +      +    Q     A   + K L   P +Q
Sbjct: 53  SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 15/84 (17%)

Query: 2   YHEAISCYERALTL---------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKA 46
             EA   +++ L                     +      A       +++AAIT+  K 
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

Query: 47  LWLKPDDQFCTEMLSLALVDEGRH 70
           L +   D    E+ +   + EG  
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEP 170

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 13/69 (18%), Positives = 27/69 (39%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y  A   +++A +L   ++  Y  LA   + Q  F+ +  ++++     P         +
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 62  LALVDEGRH 70
             L D G  
Sbjct: 386 EILTDRGDF 394

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           ++ AI    +A  L  RS     GLA      +    AI  +  +  L        +  +
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

Query: 62  LA 63
            A
Sbjct: 504 FA 505

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             E    +++A+ L      TY      Y +  ++  A   + KA  L P++
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 15/52 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + E+ + +                 A     + +F  AI  Y  A  L+   
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          ++EAI  Y+ A+ L       Y+ ++  Y    +    I +  KAL +KPD 
Sbjct: 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 2  YHEAISCYERALTLLNRSLSTYAG----LAYTYHLQDNFSAAITYYHKALWLKPDDQFCT 57
          +        +   L       YA         +    NF+ AI YY  A+ L P++    
Sbjct: 3  HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62

Query: 58 EMLSLALVDEGRH 70
            +S   +  G  
Sbjct: 63 SNISACYISTGDL 75

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           YH  +S       L   +          + L++N   A     +++ L P   
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             +A    + ++ L + + ++Y  LA T   ++N      ++ KA+ L P+ 
Sbjct: 259 LLDAQVLLQESINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 2   YHEAISCYERALTL--------LNR--------SLSTYAGLAYTYHLQDNFSAAITYYHK 45
           +  AI  Y+ A  L        +           L+  +    T   ++ F+AAI    K
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453

Query: 46  ALWLKPDDQFCTEMLSLALVDEGRH 70
           A  L P  +     L+   +   + 
Sbjct: 454 ACELDPRSEQAKIGLAQLKLQMEKI 478

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
              AI     A  L  + ++ +A LA ++  + N +AA+      L  +P 
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y E  +    AL +       +A L   Y+L +N+ +A     +A+ L+PDD
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y  A +   RA+ L       +  L  T    +    A+  Y++AL + P  
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 21/69 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA   +E            +  L  T    +    AI   + A  L P D      L+
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

Query: 62  LALVDEGRH 70
           ++  +E   
Sbjct: 97  VSHTNEHNA 105

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA+  Y RAL +    +     +A +Y     +  A     +A++++   
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 15/67 (22%)

Query: 2   YHEAISCYERALTL---------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKA 46
            + A++     L                 ++          + +   + +    T  H A
Sbjct: 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164

Query: 47  LWLKPDD 53
           L + P+D
Sbjct: 165 LEMNPND 171

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 4e-07
 Identities = 14/67 (20%), Positives = 21/67 (31%)

Query: 4  EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA 63
                E  L     ++     L  TY   + F AA+ +   AL   P      + L   
Sbjct: 3  AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 64 LVDEGRH 70
          L  +G  
Sbjct: 63 LQGQGDR 69

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 35.0 bits (81), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 14/51 (27%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
          +  A+     AL         +  L  T   Q + + A   +   L     
Sbjct: 35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.2 bits (102), Expect = 5e-07
 Identities = 7/69 (10%), Positives = 20/69 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           + +A   ++    L +     + GL         +  A+  Y     +  ++       +
Sbjct: 34  WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93

Query: 62  LALVDEGRH 70
              +  G  
Sbjct: 94  ECHLQLGDL 102

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.9 bits (96), Expect = 3e-06
 Identities = 7/52 (13%), Positives = 15/52 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y +A+  Y     +           A  +    +   A + ++ A  L    
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.8 bits (102), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y EAI  Y++AL L  RS   +  L   Y+ Q ++  AI YY KAL L P 
Sbjct: 51  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 3e-06
 Identities = 22/52 (42%), Positives = 28/52 (53%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y EAI  Y++AL L  RS   +  L   Y+ Q ++  AI YY KAL L P  
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.4 bits (96), Expect = 5e-06
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y EAI  Y++AL L  RS   +  L   Y+ Q ++  AI YY KAL L P 
Sbjct: 85  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 7e-07
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             +A +  ++AL L   +    + LA  Y        A+  Y KAL   P D       +
Sbjct: 134 RDKAEASLKQALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

Query: 62  LALVDEGRH 70
            AL+ +G+ 
Sbjct: 193 SALLLKGKA 201

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 5e-06
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y  A++ +ERAL    +       LA T       + A+      +   P  
Sbjct: 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 17/51 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
             +A+S  + A  +  R    +      Y L      A     +AL L+  
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 8e-07
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A++ Y++AL L + + + Y G    Y +++ +  A   + KAL    ++     ML 
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

Query: 62  LALVDEGRH 70
             LV   + 
Sbjct: 133 TVLVKLEQP 141

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 13/69 (18%), Positives = 22/69 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA+S +             +     TY  ++N   A+    KA+ ++PD         
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

Query: 62  LALVDEGRH 70
           L       H
Sbjct: 235 LLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +A   + +A+         Y   A      +    A+ +Y KAL L    
Sbjct: 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              A+   +RA+ L                 +     A++ +       P  
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 8e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y EA   +E+AL     +   +  L       +    A+ Y  +A+ L  +D
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 7/71 (9%), Positives = 18/71 (25%), Gaps = 4/71 (5%)

Query: 4  EAISCYERALTLLNRSLSTYAGLAYTY----HLQDNFSAAITYYHKALWLKPDDQFCTEM 59
           +   +  +  L+ R     +              ++  A   + KA+    +D      
Sbjct: 3  SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 60 LSLALVDEGRH 70
           +  L      
Sbjct: 63 FANLLSSVNEL 73

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             +A     +AL +   S   +A LA  +  +     A   Y KAL     +
Sbjct: 53  TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             +A   +E++L L     S    +A   + +  +  A  YY         +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 2   YHEAISCYERAL-TLLNRSLS-TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59
           Y EA      A    L    S  +  L          + A  Y+ K+L L  +       
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180

Query: 60  LSLALVDEGRH 70
           ++  L  E  +
Sbjct: 181 MADLLYKEREY 191

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 7/51 (13%), Positives = 16/51 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y  A   Y+       ++  +         + ++   A +Y  +   L P 
Sbjct: 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.6 bits (102), Expect = 9e-07
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 4   EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           E+       + L   S   Y  L   Y ++     A   Y  A  L+P   
Sbjct: 295 ESYQAINTGIDL-EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA   +         ++    GLA  Y +++ F  A   Y  A  L  +D
Sbjct: 52  IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 6/54 (11%), Positives = 13/54 (24%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55
           + +A   Y  A  L     +                 A   +   +    D++ 
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
              AI   +R L L   +L     LA +Y    +   A       +   P 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           ++ AI  +  ALT+     S +  L  T    D    A+  Y +AL ++P 
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
               I   E A+         +  L  T    +N  AAI    + L L+P++      L+
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140

Query: 62  LALVDEGRH 70
           ++  +    
Sbjct: 141 VSYTNTSHQ 149

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA+  Y RAL +    + +   L  +      +  A++ +  AL L+   
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2   YHEAISCYERALTLLNRSL--STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
                  Y  A       +      GL   +HL   F+ AI  ++ AL ++P+D
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +A +  E AL    ++   +   A  Y        A   + +AL +KPD 
Sbjct: 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS 75

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           +  A +  +R+L    +    +  LA T  L      A  Y+ K        Q   + L 
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLL 186

Query: 62  LALVDEGRHG 71
           L        G
Sbjct: 187 LGWKIAKALG 196

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 2   YHEAISCYERAL--TLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEM 59
             E+++ +++AL                     Q  F  A  Y  ++L  +P      + 
Sbjct: 93  PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 60  LSLALVDEGRH 70
           L+   +  G+ 
Sbjct: 153 LARTKMLAGQL 163

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.7 bits (99), Expect = 1e-06
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 2/56 (3%)

Query: 2   YHEAISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55
           Y EA+ CY   + ++    +   +A  A      +              L+     
Sbjct: 56  YEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55
          Y E+I  +E+A+ L       +       +  + +  A+  Y+  + +  D+  
Sbjct: 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
              AIS   R L L   + +    LA ++  +     A       L   P 
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y +A+ C+  AL++       +  L  T    +    A+  Y +AL L+P  
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 9e-06
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A+  +E A+    + +  +  L  T    +    AI+   + L LKPD+Q     L+
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139

Query: 62  LALVDEGRH 70
           ++  +E   
Sbjct: 140 VSFTNESLQ 148

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   YHEAISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + E    +  A+ L   +       GL   ++L   +  A+  +  AL ++P+D
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA++ Y RAL L    + +   L  +         A+ ++ +AL ++   
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
              A++  ++A    +      + LA  + L D +  A  Y+ K    +   
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF---SAAITYYHKALWLKPDDQFCTE 58
              A  C+E+AL    ++    +GLA   +  DN+     AI    +A+ L PD+Q+   
Sbjct: 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213

Query: 59  MLSLALVDEGRHG 71
           +L+L L      G
Sbjct: 214 LLALKLHKMREEG 226

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 13/52 (25%), Positives = 16/52 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             E     E AL             A  Y  +D    AI    KAL   P++
Sbjct: 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 9/52 (17%), Positives = 15/52 (28%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
                   ER+L     ++     L  TY     +  A+    K     P +
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           Y  A+    +       + +    L         F  AI  +  AL L+P++
Sbjct: 92  YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           + EAI  ++ AL L       +  +A++Y        A+ ++ KA  L    
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 15/52 (28%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y +A+   E+        +     L   Y              ++L   PD+
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 15/69 (21%), Positives = 23/69 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              A + + +AL +       +  L        NF AA   +   L L P   +      
Sbjct: 59  RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 62  LALVDEGRH 70
           +AL   GR 
Sbjct: 119 IALYYGGRD 127

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
                +      +L      T   L   Y    +  +A   +  A+     +
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 10/70 (14%), Positives = 17/70 (24%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           +  A   ++  L L       +       +       A           P+D F +  L 
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152

Query: 62  LALVDEGRHG 71
           LA        
Sbjct: 153 LAEQKLDEKQ 162

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)

Query: 2  YHEAISCYERALTLLNRSLSTYAG----LAYTYHLQDNFSAAITYYHKALWLKPDD 53
              ++  E+ L     +    A         Y      + A   + +AL ++PD 
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 76

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          + EAI  Y +A  L ++ ++     A   + +  +  AI+  + A+    + +   +++S
Sbjct: 21 FDEAIEHYNKAWEL-HKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79

Query: 62 LALVDEGRH 70
           +    G  
Sbjct: 80 KSFARIGNA 88

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 9e-06
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           +  A+  Y   +         Y+  A       +F  AI   +KA+   P+ 
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 38.7 bits (91), Expect = 4e-05
 Identities = 8/53 (15%), Positives = 18/53 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           + EAI+   +A+      +  Y   A        +++A+     A     +  
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 37.5 bits (88), Expect = 9e-05
 Identities = 6/52 (11%), Positives = 16/52 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             + +   E    +              Y  + ++  A+  Y + +   P+D
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 8/53 (15%), Positives = 16/53 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           Y  AIS    A+       + Y  ++ ++    N    +    K +       
Sbjct: 54  YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 5/52 (9%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
            +  +   ++ +    +SL+ +   A       N    +       ++ P+ 
Sbjct: 88  AYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK 138

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 2   YHEAISCYERALTLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKAL 47
               ++ ++ A+      L    + Y+ L   Y    +++ A+ Y+   L
Sbjct: 64  CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 7e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y++A+  ++  LTL  +S+        +   L  T  +   F  A     + L
Sbjct: 102 YNKAMQYHKHDLTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 7e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           + +A   Y+R L L    L        +   L  TY L   F+ AI Y+++ L
Sbjct: 279 FEDAAEHYKRTLAL-AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           ++ AI  + R L +  + L            L   +        A+ Y  + L
Sbjct: 319 FNTAIEYHNRHLAI-AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           +  AI  ++  L +  R            + L  ++     F  A  +Y + L
Sbjct: 239 FQAAIEHHQERLRI-AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
              A+  Y+  L L  R L            L  TY+L  +F AAI ++ + L
Sbjct: 199 LTRAVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 6/59 (10%)

Query: 2  YHEAISCYERALTLLNRSL------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
               + ++      + S          A          +  A + ++  A+    +D 
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.7 bits (94), Expect = 4e-06
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
          Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P+
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A         +     +    +A  L P  
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 8e-06
 Identities = 6/52 (11%), Positives = 14/52 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A         +     +    +A  L P+ 
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L    +   A         +     +    +A  L P+ 
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 7/69 (10%), Positives = 14/69 (20%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
               +    +A  L    +   A         +   A +    +A  L P+         
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 62  LALVDEGRH 70
                    
Sbjct: 182 GGKQALETV 190

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 7/53 (13%), Positives = 16/53 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
               +    +A  L  + +   A         ++  A ++    AL    +D 
Sbjct: 428 VQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A         +     +    +A  L P  
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 6/52 (11%), Positives = 12/52 (23%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L    +   A         +     +    +A  L P  
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 6/52 (11%), Positives = 14/52 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A  +      +     +    +A  L P  
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 6/69 (8%), Positives = 12/69 (17%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
               +    +A  L    +   A         +     +    +A  L P          
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 62  LALVDEGRH 70
                    
Sbjct: 216 GGKQALETV 224

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A         +     +    +A  L P  
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 6/52 (11%), Positives = 14/52 (26%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L  + +   A         +     +    +A  L P+ 
Sbjct: 88  VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 4e-06
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
           Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P+
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.1 bits (95), Expect = 6e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          Y EAI  Y++AL L   +   +  L   Y+ Q ++  AI YY KAL L P++
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 2  YHEAISCYERALTLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKAL 47
              +S +E A+ +    L    + Y+ L   Y    +++ A+ Y+H  L
Sbjct: 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +A+  +   LTL  R++            L  T  +  NF  AI    + L
Sbjct: 59  YAKALEYHHHDLTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           +  A   Y++ L L  R L        +   L  TY L  ++  AI Y+ K L
Sbjct: 239 FETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +AI  + + L +  + L            L   Y    N   A+ +  K L
Sbjct: 279 YEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
              A+  YE  L+L   +L         +  L  T++L  NF  A+  + + L
Sbjct: 159 LQAAVDLYEENLSL-VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           + +A+  +E+ L +  +           Y+ L   Y     F  A  YY K L
Sbjct: 199 FRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 5e-06
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 2  YHEAISCYERALTLLNRSLST-YAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             A+   E  L          Y  +   Y    ++  A+  Y  A+ L PD 
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 39.6 bits (93), Expect = 8e-06
 Identities = 11/63 (17%), Positives = 32/63 (50%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          + +A   Y++A+ L   +++ Y   A  Y  +  F+  + +  KA+ +  + +   ++++
Sbjct: 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83

Query: 62 LAL 64
           A+
Sbjct: 84 KAM 86

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 34.9 bits (81), Expect = 6e-04
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 2   YHEAISCYERALTL-------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
           + E +   E+A+ +               +     +  Q++ S A+ ++H++L    D +
Sbjct: 58  FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 2  YHEAISCYERALTLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKAL 47
              +S +E A+ +    L    + Y+ L   Y    +++ A+ Y+H  L
Sbjct: 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
              A+  YE  L+L   +L         +  L  T++L  NF  A+  + + L
Sbjct: 163 LQAAVDFYEENLSL-VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +A+  +   LTL  R++            L  T  +  NF  AI    + L
Sbjct: 63  YAKALEYHHHDLTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           +  A   Y++ L L  R L        +   L  TY L  ++  AI Y+ K L
Sbjct: 243 FETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +AI  + + L +  + L            L   Y    N   A+ +  K L
Sbjct: 283 YEKAIDYHLKHLAI-AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           + +A+  +E+ L +  +           Y+ L   Y     F  A  YY K L
Sbjct: 203 FRDAVIAHEQRLLI-AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 2   YHEAISCYERALTLL----NRSLS---TYAGLAYTYHLQDNFSAAITYYHKAL 47
           +  A  C+     LL       L+       +A       + + A   Y K+L
Sbjct: 82  WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 2   YHEAISCYERALTLL----NRSL--STYAGLAYTYHLQDNFSAAITYYHKAL 47
              A   YE++L       ++      + GL      + N   A  ++ +A 
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 8/53 (15%)

Query: 2  YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
          + EA + ++       +              +     +  N+ AA   + +  
Sbjct: 42 FDEARASFQALQQQ-AQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 2  YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
          Y  A+   ++AL  L ++         +    LA  Y  Q+ +  A    + AL
Sbjct: 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +A +    AL +  ++L        +T   LA  Y  +  +  A     +AL
Sbjct: 85  YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y E    Y+RAL +    L         T   LA  Y  Q  F  A T Y + L
Sbjct: 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 9/58 (15%)

Query: 2   YHEAISCYERALTLLNRS---------LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50
           + +A + Y+  LT  +              +         +       ++     W K
Sbjct: 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y EA    +RAL +  + L             LA     Q  +     YY +AL
Sbjct: 127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 2   YHEAISCYERALTLLNRSLS---TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE 58
             +A+S Y +A  +  ++ S    +   A  +  ++++  A+  + +A  L P      +
Sbjct: 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296

Query: 59  MLSLALVDEGRH 70
                L    R 
Sbjct: 297 REQQLLEFLSRL 308

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
             EA     +A+ L    +  +  L   Y  + + ++A T +  AL    + 
Sbjct: 119 SPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK 170

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 37.7 bits (87), Expect = 9e-05
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 10/61 (16%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQ---------DNFSAAITYYHKALWLKPD 52
              A +C+  ALT   ++  +   L+                +   ++     A+ +   
Sbjct: 153 VTSAHTCFSGALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211

Query: 53  D 53
           D
Sbjct: 212 D 212

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFS-AAITYYHKALWLKPDD 53
             + +   E  L                 ++  ++S  A     KA+ L+P+ 
Sbjct: 84  MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           +  A   Y++ L L  R L        +   L  TY L  ++  AI Y+ K L
Sbjct: 65  FETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 2  YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
          + +A+  +E+ L +  +           Y+ L   Y     F  A  YY K L
Sbjct: 25 FRDAVIAHEQRLLI-AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 37.9 bits (89), Expect = 5e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 2   YHEAISCYERALTLLNRSL-------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y +AI  + + L +  + L            L   Y    N   A+ +  K L
Sbjct: 105 YEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 2  YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
             A+   ++AL  L ++         +    LA  Y  Q+ +  A    + AL
Sbjct: 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 9/58 (15%)

Query: 2   YHEAISCYERALTLLNRS---------LSTYAGLAYTYHLQDNFSAAITYYHKALWLK 50
           Y +A + Y+  LT  +              +         +D    +  Y     W K
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y EA      AL +  ++L        +T   LA  Y  +  +  A     +AL
Sbjct: 59  YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
             E    Y RAL +    L         T   LA  Y  Q  +  A T Y + L
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y EA    +RAL +  + L             LA     Q        YY +AL
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 10/54 (18%)

Query: 2   YHEAISCYERALTLLNRSL--------STYAGLAYTYHLQDNFSAAITYYHKAL 47
             ++    E       ++         +T   L   Y  Q    AA T    A 
Sbjct: 228 RRDSAPYGEYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.2 bits (87), Expect = 5e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
             A++ +E  +      + TY  L   Y   D    AI  Y + + +  +
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 37.7 bits (88), Expect = 5e-05
 Identities = 8/51 (15%), Positives = 22/51 (43%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
          +  A+  Y++A  L   +++     A  Y  + +++       KA+ +  +
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN---FSAAITYYHKALWLKPDDQFCTE 58
           Y  ++  Y +AL L   +   YA LA   + Q +    +       KAL L  ++     
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 59  MLSLALVDEGRH 70
           +L+     +  +
Sbjct: 120 LLASDAFMQANY 131

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 9/51 (17%), Positives = 24/51 (47%)

Query: 4  EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ 54
            +   +  +    ++   +A L   Y  Q+++S ++  Y +AL L+ ++ 
Sbjct: 28 AQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 4   EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
           +  +  ++AL L +  ++    LA    +Q N++ AI  + K + L    
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           Y  A+   ERA+ +       Y  +       +    A+ YY KAL L PD++     L 
Sbjct: 62  YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

Query: 62  LA 63
           +A
Sbjct: 122 IA 123

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 34.5 bits (80), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
          +  A+  Y +A+ L   +   +   A  Y    N++ A+    +A+ + P 
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 35.9 bits (82), Expect = 4e-04
 Identities = 11/68 (16%), Positives = 21/68 (30%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             +A   ++      + +L    G A  +  Q  + AA     +AL            L 
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241

Query: 62  LALVDEGR 69
           +     G+
Sbjct: 242 VLSQHLGK 249

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 7/52 (13%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
               +    +A  L    +   A         +     +    +A  L PD 
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 4/52 (7%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 2   YHEAISCYERALTLLNRSLS------TYAGLAYTYHLQDNFSAAITYYHKAL 47
           + EA +  ++  ++     +                 + ++ AA     ++ 
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF 55
             EA   + R++         Y      Y+  + +  AI    +AL     +Q 
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 2   YHEAISCYERALTLLNRSL------STYAGLAYTYHLQDNFSAAITYYHKAL 47
           Y  AI  +++A + L            +  ++ +Y+       ++ Y  +A 
Sbjct: 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.52
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.51
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.47
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.36
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.29
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.28
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.27
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.23
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.21
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.2
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.2
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.19
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.1
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.1
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.03
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.01
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.01
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.01
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.98
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.96
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.87
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.82
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.81
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.77
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.76
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.74
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.72
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.7
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.69
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.64
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.53
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.51
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.49
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.47
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.42
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.41
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.32
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.27
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.23
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.2
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.16
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.15
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.13
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.0
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.97
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.74
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.7
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.36
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.29
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.12
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.1
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.63
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.43
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.34
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.99
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	94.98
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	94.9
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	94.59
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	94.55
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.78
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	93.25
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.1
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	92.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.54
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.49
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	92.32
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	92.21
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.98
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	91.84
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	91.37
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.55
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	89.55
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.67
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.59
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	88.14
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	86.83
3eab_A	89	Spastin; spastin, MIT, ESCRT, alternative splicing	85.48
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	85.24
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	84.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.28
2yhe_A	668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	84.08
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.59
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	80.75
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	80.21

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=3.4e-16  Score=84.41  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++.+++.++...|+.
T Consensus        51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A           51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence            5789999999999999999999999999999999999999999999999999999999999999887753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.68  E-value=1.1e-15  Score=79.88  Aligned_cols=69  Identities=16%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE   96 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC
Confidence            478888888888888888888888888888888888888888888888888888888888888877654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.66  E-value=2.2e-15  Score=80.58  Aligned_cols=70  Identities=17%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++...++.
T Consensus        46 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           46 EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            5889999999999999999999999999999999999999999999999999999999999998877653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.65  E-value=2e-15  Score=78.92  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++
T Consensus        62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999999998888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.63  E-value=9.1e-15  Score=75.84  Aligned_cols=70  Identities=19%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.++...|+.
T Consensus        32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            4789999999999999999999999999999999999999999999999999999999998888877653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.1e-14  Score=74.11  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A           19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999999999999999999999999998888888877654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.60  E-value=1.6e-14  Score=77.18  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus        36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~  104 (148)
T 2vgx_A           36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE  104 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            578899999999999999999999999999999999999999999999999999888888888877665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=2.2e-14  Score=75.77  Aligned_cols=69  Identities=10%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus        33 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999999999999999999999999888888888877665

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.59  E-value=9.6e-14  Score=69.72  Aligned_cols=71  Identities=21%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD------QFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.++|++      ..++..++.++...|...
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (111)
T 2l6j_A           19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ   95 (111)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence            57899999999999999999999999999999999999999999999999999      777888888888877543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=4.8e-15  Score=77.40  Aligned_cols=67  Identities=16%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-------HHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF-------CTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~   67 (79)
                      +|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..       ++..++.++...
T Consensus        23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~   96 (127)
T 4gcn_A           23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ   96 (127)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999999999999999999999987652       344455554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.58  E-value=8.4e-14  Score=67.81  Aligned_cols=67  Identities=33%  Similarity=0.478  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+|+++++.+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...
T Consensus        24 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999999999988887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.56  E-value=8.2e-14  Score=74.84  Aligned_cols=69  Identities=22%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++...++
T Consensus        26 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD   94 (164)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence            477888888888888888888888888888888888888888888888888888888888877776554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.3e-13  Score=76.81  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.++..++.++...+
T Consensus        69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999988888765443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=9.9e-14  Score=75.50  Aligned_cols=70  Identities=29%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHH----
Q 038754            1 IYHEAISCYERALTLLNR-------SLS-----TYAGLAYTYHLQDNFSAAITYYHKALWL-------KPDDQFCT----   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~----   57 (79)
                      +|++|+..|+++++++|+       +..     +|+++|.++..+|++++|+.+|++++.+       +|++..++    
T Consensus        26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~  105 (159)
T 2hr2_A           26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  105 (159)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence            589999999999999999       544     9999999999999999999999999999       99999999    


Q ss_pred             HHHHHHHHHhhhc
Q 038754           58 EMLSLALVDEGRH   70 (79)
Q Consensus        58 ~~l~~~~~~~~~~   70 (79)
                      .+.+.++...++.
T Consensus       106 ~~rG~aL~~lgr~  118 (159)
T 2hr2_A          106 YSRALALDGLGRG  118 (159)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HhHHHHHHHCCCH
Confidence            9999988877653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=6.9e-14  Score=76.05  Aligned_cols=63  Identities=22%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-----------NFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +++|+..|+++++++|+++.+|+++|.+|..+|           ++++|+.+|++|++++|++...+..+..+-
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            569999999999999999999999999999885           899999999999999999997776665443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.52  E-value=3.5e-13  Score=66.89  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH--HHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLS-TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT--EMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~   67 (79)
                      ++++|+..|+++++.+|+++. +++.+|.+|..+|++++|+.+|+++++++|+++.++  ..+..++...
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~   84 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNFY   84 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            578999999999999999999 999999999999999999999999999999998777  6666666543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.52  E-value=4.2e-13  Score=69.65  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   92 (137)
T 3q49_B           24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   92 (137)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999999999999999999999888888888877654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=3.2e-13  Score=72.40  Aligned_cols=70  Identities=11%  Similarity=-0.022  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+..++++++++|+++.+|+.+|.+|..+|++++|+.+|++++.++|+++ .+...+..+.......
T Consensus        78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999998 6677777766655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.51  E-value=8.4e-14  Score=74.39  Aligned_cols=69  Identities=20%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITY-YHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++.+|... ++++++++|+++.++...+.++...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            578999999999999999999999999999999999887765 599999999999999888888776554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.50  E-value=2.6e-14  Score=73.28  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTL---LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|++++++   +|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++...|
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence            34555555555555   35555555555555555566655655565555555555555555555554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=7.1e-13  Score=74.27  Aligned_cols=67  Identities=22%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++...
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A           20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999999999999999999998888776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.49  E-value=2.4e-13  Score=73.91  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNF----------SAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      |++|+..++++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++..++..++.++...|.
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            78999999999999999999999999999999875          599999999999999999999999999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=2.8e-13  Score=75.50  Aligned_cols=70  Identities=23%  Similarity=0.339  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAG----------------LAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.+|+++++.+|+++.+++.                +|.+|..+|++++|+..|+++++++|+++.++..++.++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   98 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ   98 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            5789999999999999999999999                999999999999999999999999999999999999998


Q ss_pred             HHhhhc
Q 038754           65 VDEGRH   70 (79)
Q Consensus        65 ~~~~~~   70 (79)
                      ...|+.
T Consensus        99 ~~~g~~  104 (208)
T 3urz_A           99 VCRGQE  104 (208)
T ss_dssp             HHHTCH
T ss_pred             HHcCCH
Confidence            877653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.47  E-value=6.2e-13  Score=67.70  Aligned_cols=67  Identities=21%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      .+|+..|+++++.+|+++.+++.+|.+|...|++++|+.+|++++.++|++..++..++.++...|+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   68 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD   68 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC
Confidence            3578888888899998889999999999999999999999999999999888888888887776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.47  E-value=4e-13  Score=71.72  Aligned_cols=63  Identities=14%  Similarity=-0.051  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++........+
T Consensus        70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A           70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV  132 (148)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence            578999999999999999999999999999999999999999999999999887554443333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=3.8e-13  Score=72.09  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL------------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      +|++|+..|++++++                  +|.++.+++++|.+|..+|++++|+..+++++.++|+++.++..++.
T Consensus        26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  105 (162)
T 3rkv_A           26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK  105 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            578999999999999                  77778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 038754           63 ALVDEGR   69 (79)
Q Consensus        63 ~~~~~~~   69 (79)
                      ++...|+
T Consensus       106 ~~~~~g~  112 (162)
T 3rkv_A          106 ARIAAWK  112 (162)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhc
Confidence            8887765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=6.4e-13  Score=85.79  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++.+++.++...|+
T Consensus        24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            355666666666666666666666666666666666666666666666666666666666666555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=8.2e-13  Score=68.06  Aligned_cols=66  Identities=14%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK------PDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~   66 (79)
                      ++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++      |+++.++..+..+...
T Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999      9999888888777654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=7.8e-13  Score=71.20  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+++
T Consensus        85 ~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            588999999999999999999999999999999999999999999999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=2.1e-12  Score=64.36  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++.+|.++.+++.+|.++..+|++++|+.+|+++++++|+  +..++..++.++...
T Consensus        21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999  998888888887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.44  E-value=6.6e-13  Score=80.40  Aligned_cols=67  Identities=6%  Similarity=0.030  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++.++|++..++.+++.++...|
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence            4444444444444444444444444444444444444444444444444444444444444444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=2.6e-12  Score=69.63  Aligned_cols=69  Identities=25%  Similarity=0.294  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++.|...+.++++++|.++.++..+|.+|..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A           88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL  156 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence            467788888888888898888899999999999999999999999999999888888888888877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.44  E-value=4.5e-12  Score=64.52  Aligned_cols=67  Identities=25%  Similarity=0.365  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.++.++++.+|+++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...+
T Consensus        62 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           62 YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            4555555666666666555666666666666666666666666666666655555555555555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=1.3e-12  Score=84.45  Aligned_cols=67  Identities=28%  Similarity=0.255  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++.+++.++...+
T Consensus        93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence            3444444444444444444444444444444444544544455555444444444444444444433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.44  E-value=1e-12  Score=73.60  Aligned_cols=69  Identities=16%  Similarity=0.105  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQ-----------DNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++++|+++.+++++|.++..+           |++++|+..|+++++++|+++.++..++.++...|+
T Consensus        54 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           54 LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            356677777777777777777777777777777           777777777777777777777666666666655443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=4.1e-12  Score=63.71  Aligned_cols=69  Identities=23%  Similarity=0.221  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++.++|+++.++..++.++...++
T Consensus        19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            467788888888888888888888888888888888888888888888888887777777777665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.43  E-value=2.7e-12  Score=76.24  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++...++.
T Consensus       211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999998888888887766543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=3.7e-12  Score=65.40  Aligned_cols=68  Identities=21%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSL---STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD---QFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..|+++++..|+++   .+++.+|.++..+|++++|+..|++++..+|++   +.++..++.++...|
T Consensus        17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g   90 (129)
T 2xev_A           17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG   90 (129)
T ss_dssp             CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence            35677777777777777766   677777777777777777777777777777776   555666666655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.42  E-value=4e-12  Score=70.01  Aligned_cols=71  Identities=15%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|+.+++++++++|+++.+++.+|.+|..+|++++|+.+|++++.++|+++.++..++.+....++..
T Consensus       103 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999988888887765543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.42  E-value=8.8e-13  Score=69.52  Aligned_cols=60  Identities=12%  Similarity=0.016  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|+++......
T Consensus        67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            578999999999999999999999999999999999999999999999999887444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=3e-12  Score=65.59  Aligned_cols=67  Identities=19%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|+++++.+|.++.+++.+|.++...|++++|+.+|+++++++|+++.++..++.++...+
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~   98 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK   98 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence            4556666666666666666666666666666666666666666666666666655555555554433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.41  E-value=3.4e-12  Score=63.98  Aligned_cols=71  Identities=18%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|+  +......+...+...+...
T Consensus        22 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~~~~   94 (100)
T 3ma5_A           22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE   94 (100)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHccccc
Confidence            5789999999999999999999999999999999999999999999999773  4555666676666555433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=4.5e-12  Score=64.84  Aligned_cols=60  Identities=10%  Similarity=0.051  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+.+|+++++++|+++.+++++|.++..+|++++|+..|++++.++|+++......
T Consensus        42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999998665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=4.2e-12  Score=76.91  Aligned_cols=70  Identities=7%  Similarity=-0.032  Sum_probs=66.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+..|+++++++|+++.+|+++|.++..+|+ +++|+.+|++++.++|++..++..++.++...|+.
T Consensus       112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~  182 (382)
T 2h6f_A          112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP  182 (382)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence            47899999999999999999999999999999997 99999999999999999999999999999887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.40  E-value=2.1e-12  Score=69.27  Aligned_cols=67  Identities=12%  Similarity=0.009  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF--CTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~   67 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.  ....+..+....
T Consensus        60 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  128 (164)
T 3sz7_A           60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI  128 (164)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999875  344444444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=7.5e-12  Score=67.82  Aligned_cols=68  Identities=21%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+.+++..+|+++.++..++......+
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (184)
T 3vtx_A           20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID   87 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence            58899999999999999999999999999999999999999999999999999988877777666544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=4.1e-12  Score=65.12  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+++++++.+|.++.+++.+|.++...|++++|+.+|++++.++|++..++..++.++...+
T Consensus        65 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999999999999999999999988888888877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.40  E-value=5.8e-12  Score=73.10  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++...|+
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   87 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999999999999999999999999999888888877654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=1.5e-11  Score=61.66  Aligned_cols=64  Identities=17%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+.
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            4789999999999999999999999999999999999999999999999999998888777664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.39  E-value=1.3e-11  Score=62.76  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++.++|+++.++..++.++...++
T Consensus        27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence            478999999999999999999999999999999999999999999999999999888888888776554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.39  E-value=2e-13  Score=74.33  Aligned_cols=60  Identities=13%  Similarity=0.050  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHhh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTL-------LNRSLSTY----AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      +|++|+.+|++++++       +|+++.+|    +++|.++..+|++++|+.+|+++++++|++......+
T Consensus        72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            588999999999999       99999999    9999999999999999999999999999987443333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=4.8e-12  Score=73.86  Aligned_cols=69  Identities=16%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++..|+++.+++++|.++..+|++++|+..|++++.++|+++.++.+++.++...|+
T Consensus       181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            368999999999999999999999999999999999999999999999999999999999888877665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.39  E-value=1.1e-11  Score=65.66  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+..|+++++.+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++..
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.38  E-value=1.9e-11  Score=61.71  Aligned_cols=65  Identities=34%  Similarity=0.475  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+..++++++..|.++.+++.+|.++...|++++|+.++++++.++|+++.++..++.++..
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            45555666666666665556666666666666666666666666666666555555555544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=1.1e-11  Score=69.21  Aligned_cols=68  Identities=19%  Similarity=0.065  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLN-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..|+++++++| .++.+++++|.++..+|++++|+.+|+++++++|+++.++..++.++...+
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   90 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMK   90 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc
Confidence            35666666666666666 666666666666666666666666666666666666666666666655544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.36  E-value=1.2e-11  Score=73.45  Aligned_cols=69  Identities=25%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+.+|+++++++|.+               ..+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++.
T Consensus       162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  241 (336)
T 1p5q_A          162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  241 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            5789999999999999998               6999999999999999999999999999999999999999998887


Q ss_pred             Hhhh
Q 038754           66 DEGR   69 (79)
Q Consensus        66 ~~~~   69 (79)
                      ..++
T Consensus       242 ~~g~  245 (336)
T 1p5q_A          242 AVND  245 (336)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            7664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-11  Score=64.18  Aligned_cols=66  Identities=23%  Similarity=0.074  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+.+|+++++.+|++   ..+++.+|.+|...|++++|+.+|++++.++|+++.++..++.++...
T Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  112 (148)
T 2dba_A           44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL  112 (148)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence            445555555555555554   555555555555555555555555555555555555444444444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.36  E-value=7.3e-12  Score=77.00  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++...++
T Consensus       332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999888777777766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-11  Score=63.80  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.+++++++.+|+++.+++.+|.++..+|++++|+.+|++++.++|+++.++..+..+.
T Consensus        80 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999998887777664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.34  E-value=1.9e-11  Score=67.25  Aligned_cols=69  Identities=25%  Similarity=0.224  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL----------------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.+|++++++.|.++                .+++++|.+|..+|++++|+.++++++.++|+++.++..++.++
T Consensus        53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  132 (198)
T 2fbn_A           53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  132 (198)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            57899999999999999887                89999999999999999999999999999999999998888888


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...++
T Consensus       133 ~~~~~  137 (198)
T 2fbn_A          133 MYFGF  137 (198)
T ss_dssp             HHHTC
T ss_pred             HHccc
Confidence            77654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=1.9e-11  Score=73.68  Aligned_cols=69  Identities=14%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.+....++
T Consensus       288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999888888887776554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.34  E-value=3.4e-11  Score=61.74  Aligned_cols=64  Identities=6%  Similarity=-0.057  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+..|+++++.+|++   +.+++.+|.++..+|++++|+..|++++...|+++.+......+.
T Consensus        54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           54 NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5789999999999999999   999999999999999999999999999999999987665554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=1.9e-11  Score=68.28  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH-------HHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC-------TEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~   67 (79)
                      ++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|+++..       +..++.+....
T Consensus        57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~  130 (228)
T 4i17_A           57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA  130 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999944       55555554443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.33  E-value=2e-11  Score=62.04  Aligned_cols=69  Identities=19%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|.++.+++.+|.+|..+|++++|+..|++++.++|+  +......+...+...++
T Consensus        34 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999999999999999999999884  45555566666655543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.33  E-value=4.9e-11  Score=60.14  Aligned_cols=67  Identities=33%  Similarity=0.478  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++.++|+++.++..++.+....
T Consensus        58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999999999999999998888877654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=2.5e-11  Score=75.08  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.++...++
T Consensus        21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            356677777777777777777777777777777777777777777777777776666666666655443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.32  E-value=5e-12  Score=65.39  Aligned_cols=54  Identities=22%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++.
T Consensus        66 ~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            478999999999999999999999999999999999999999999999999865

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=5.5e-11  Score=62.94  Aligned_cols=63  Identities=22%  Similarity=0.231  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++++|+.+++++++.+|.++.+++.+|.++..+|++++|+.+|++++.++|+++.++..++.+
T Consensus        62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999998776555444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.32  E-value=3e-11  Score=68.36  Aligned_cols=69  Identities=22%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++...|+
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  126 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  126 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence            467788888888888888888888888888888888888888888888888888777777777766543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=1.6e-11  Score=78.56  Aligned_cols=72  Identities=11%  Similarity=-0.039  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      ++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++.+++.++...|+...
T Consensus       448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            478999999999999999999999999999999999999999999999999999999999999988776543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.30  E-value=2.7e-11  Score=74.52  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +|++|+..|+++++++|.+               ..+|+++|.||.++|++++|+.+|++++.++|++..++..++.++.
T Consensus       283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~  362 (457)
T 1kt0_A          283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  362 (457)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            5789999999999999998               7999999999999999999999999999999999999999998887


Q ss_pred             Hhhh
Q 038754           66 DEGR   69 (79)
Q Consensus        66 ~~~~   69 (79)
                      ..++
T Consensus       363 ~~g~  366 (457)
T 1kt0_A          363 LMNE  366 (457)
T ss_dssp             HTTC
T ss_pred             HccC
Confidence            7654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.30  E-value=4.4e-11  Score=65.90  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----------------HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ----------------FCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~   64 (79)
                      ++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|++.                .++..++.++
T Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (213)
T 1hh8_A           52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY  131 (213)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999888766                7777777777


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       132 ~~~g~  136 (213)
T 1hh8_A          132 AKKEE  136 (213)
T ss_dssp             HHTTC
T ss_pred             HHccC
Confidence            66553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=4.8e-11  Score=70.30  Aligned_cols=69  Identities=23%  Similarity=0.289  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.+|+++|.+|...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA  296 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            467778888888888888888888888888888888888888888888888877777777777766554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=5.9e-11  Score=66.42  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+++++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus       154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            478899999999999999999999999999999999999999999999999999888888888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=2.3e-11  Score=61.91  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD-------QFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.++.++++.+|.++.+++.+|.++...|++++|+.+|++++.++|++       ..++..++.++...++
T Consensus        19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   94 (131)
T 1elr_A           19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK   94 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc
Confidence            47899999999999999999999999999999999999999999999998877       7777777777766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.29  E-value=5.3e-11  Score=70.11  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.+++.+|.+|..+|++++|+..|++++.++|+++.++..++.++...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  148 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH  148 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence            578999999999999999999999999999999999999999999999999999999999988877664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.29  E-value=6.3e-11  Score=64.25  Aligned_cols=67  Identities=13%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhhc
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGRH   70 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~   70 (79)
                      +|+..++++++.+|+++.+++++|.++...|++++|+..|+++++++|++  +.++..++.++...|+.
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            47889999999999999999999999999999999999999999999986  56888899888887764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.29  E-value=1.5e-11  Score=63.69  Aligned_cols=67  Identities=19%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD-----DQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++.++|+     +..+...+..+....
T Consensus        58 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999998     666666666655443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=4.1e-11  Score=59.90  Aligned_cols=53  Identities=19%  Similarity=0.070  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      .++|...++++++++|+++.+++.+|..++..|+|++|+..|++++..+|.++
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            47899999999999999999999999999999999999999999999999854

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.28  E-value=9.3e-11  Score=68.13  Aligned_cols=69  Identities=22%  Similarity=0.145  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+++++++.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+..+....++
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999888888877766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.28  E-value=4.8e-11  Score=64.41  Aligned_cols=59  Identities=24%  Similarity=0.320  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYT-YHLQDNF--SAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      ++|+.+|+++++++|+++.++..+|.+ +...|++  ++|+.+|++++.++|+++.++..++
T Consensus        61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  122 (177)
T 2e2e_A           61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA  122 (177)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            333444444444444444444444443 3333333  4444444444444444333333333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.27  E-value=3.8e-11  Score=74.00  Aligned_cols=68  Identities=16%  Similarity=0.080  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLN---RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+.+|+++++++|   .++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++...++
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999   9999999999999999999999999999999999999888888887776654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.26  E-value=1.9e-11  Score=66.01  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA-LVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~   69 (79)
                      +++|+..++++++.+|.++.+++.+|.+|...|++++|+.+|++++.++|+++.++..++.+ +...++
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~   94 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ   94 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence            56788999999999999999999999999999999999999999999999999998888888 555444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.25  E-value=4.1e-11  Score=73.24  Aligned_cols=69  Identities=25%  Similarity=0.289  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++.++|+++.++..++.++...|+
T Consensus        40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  108 (537)
T 3fp2_A           40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN  108 (537)
T ss_dssp             CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999999999999999999999999998888888877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.25  E-value=4.5e-11  Score=59.81  Aligned_cols=55  Identities=20%  Similarity=0.001  Sum_probs=49.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           15 LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      .+|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.++..++.++...|+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~   56 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR   56 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999999999999999999999999887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.24  E-value=1.6e-10  Score=67.10  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK   86 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999999999999999999999999888888888877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.24  E-value=1.8e-10  Score=67.56  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...|+
T Consensus       232 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            356777777777777777777777777777777777777777777777777777666666666665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=1.3e-10  Score=72.47  Aligned_cols=66  Identities=20%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++...
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  104 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA  104 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            455555555555555555555555555555555555555555555555555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.23  E-value=1.8e-11  Score=72.75  Aligned_cols=65  Identities=20%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..+..+..
T Consensus       245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999988877776643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.23  E-value=1.7e-10  Score=67.63  Aligned_cols=69  Identities=22%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...|+
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  147 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  147 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999999999999999999999999999888888877654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.23  E-value=3e-10  Score=57.43  Aligned_cols=61  Identities=26%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            1 IYHEAISCYERALTLL-------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      +|..|+.+|+.+++..       +..+.++..+|.+++++|+++.|+..++++++++|+++.+..++.
T Consensus        20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            5789999999999964       356889999999999999999999999999999999998866655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.23  E-value=9.7e-11  Score=63.26  Aligned_cols=65  Identities=17%  Similarity=0.097  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLL-N-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +.+++..++.+++.+ | +..+++|++|..++++|+|++|..+++++++++|+|..+..........
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            468999999999999 7 5689999999999999999999999999999999999887664443333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.22  E-value=5.4e-11  Score=71.67  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALT----------------LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+..|+++++                .+|.++.+++++|.+|.++|++++|+.+|+++++++|+++.++..++.++
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  317 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            57899999999999                78888999999999999999999999999999999999999999999888


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...++
T Consensus       318 ~~~g~  322 (370)
T 1ihg_A          318 QGLKE  322 (370)
T ss_dssp             HHTTC
T ss_pred             HHccC
Confidence            77654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=3.3e-10  Score=60.44  Aligned_cols=66  Identities=15%  Similarity=0.185  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++.++|+++.++..++.++...
T Consensus        92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM  157 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence            455555555555555555555566666666666666666666666665555555555555544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=8.4e-11  Score=69.83  Aligned_cols=67  Identities=30%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..++..++.++...|
T Consensus       287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            4555666666666666666666666666666666666666666666666655555555555554433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=3e-10  Score=57.67  Aligned_cols=64  Identities=38%  Similarity=0.488  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +++|+.+++++++..|.++.+++.+|.++...|++++|+..+++++...|.++.++..++.++.
T Consensus        51 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  114 (136)
T 2fo7_A           51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY  114 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555444444444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.21  E-value=1.1e-10  Score=72.23  Aligned_cols=63  Identities=22%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++++|+..++++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.+
T Consensus        55 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999888777776

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.21  E-value=1.3e-10  Score=67.49  Aligned_cols=68  Identities=12%  Similarity=0.035  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhhhc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD--QFCTEMLSLALVDEGRH   70 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~   70 (79)
                      .+|+..++++++.+|+++.+++++|.++...|++++|+..|+++++++|++  ..++..++.++...|+.
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            468889999999999999999999999999999999999999999999998  78899999999887753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.21  E-value=7.4e-11  Score=68.06  Aligned_cols=70  Identities=36%  Similarity=0.576  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH-Hhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV-DEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~   70 (79)
                      ++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++. ..|+.
T Consensus       251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            47899999999999999999999999999999999999999999999999999999999998884 33433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.21  E-value=4.7e-11  Score=70.97  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSL-----------------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++++|+.+|+++++..|++.                 .+++++|.+|..+|++++|+.+|++++.++|++..++..++.+
T Consensus       194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            47899999999999999887                 4999999999999999999999999999999999999999988


Q ss_pred             HHHhhh
Q 038754           64 LVDEGR   69 (79)
Q Consensus        64 ~~~~~~   69 (79)
                      +...++
T Consensus       274 ~~~~g~  279 (338)
T 2if4_A          274 KAELGQ  279 (338)
T ss_dssp             HHTTTC
T ss_pred             HHHcCC
Confidence            877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.20  E-value=1.9e-10  Score=58.42  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRS-------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+++++++..|.+       +.+++.+|.++...|++++|+.+|++++.++| ++.....+..+....++
T Consensus        53 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            5789999999999999887       99999999999999999999999999999999 57777777777766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.20  E-value=4.9e-10  Score=56.84  Aligned_cols=69  Identities=36%  Similarity=0.475  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|.++.+++.+|.++...|++++|+..+++++..+|+++.++..++.++...++
T Consensus        16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A           16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999999999999999999888878777765543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=2.3e-10  Score=65.06  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~   66 (79)
                      ++++|+..|+++++..|++   +.+++.+|.+|..+|++++|+..|++++++.|+++   .++..++.++..
T Consensus        30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            5789999999999999999   99999999999999999999999999999999764   556666666655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.20  E-value=4.8e-10  Score=59.77  Aligned_cols=68  Identities=19%  Similarity=0.148  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++.++|+++.++..++.++...+
T Consensus        57 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            46778888888888888888888888888888888888888888888888888777777776666544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=3.7e-10  Score=67.07  Aligned_cols=68  Identities=26%  Similarity=0.251  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|...++++++.+|.++.+|+.+|.++...|++++|+..|++++.++|++..++..++.++...|+
T Consensus        49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  116 (388)
T 1w3b_A           49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD  116 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence            56677777777777777777777777777777777777777777777777777777677666665544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.19  E-value=4.1e-10  Score=61.84  Aligned_cols=67  Identities=21%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++.+|+++.++..+|.++...|++++|+..|++++.++|++..++..++.++...
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            4678888888888888888888888888888888888888888888888888887777777776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.18  E-value=3.7e-10  Score=70.48  Aligned_cols=67  Identities=18%  Similarity=0.023  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.++...
T Consensus        72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999999998888888776

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.18  E-value=5.1e-10  Score=67.25  Aligned_cols=69  Identities=22%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.+....++
T Consensus       310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            478899999999999999999999999999999999999999999999999999888888766555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.18  E-value=9.1e-11  Score=72.34  Aligned_cols=69  Identities=10%  Similarity=-0.070  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQ--------DNFSAAITYYHKALWLKP---DDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+        |++++|+.+|+++++++|   +++.++..++.++...|+
T Consensus       194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~  273 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence            368999999999999999999999999999999        999999999999999999   999999999998887665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.17  E-value=4.8e-10  Score=67.36  Aligned_cols=69  Identities=19%  Similarity=0.127  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|+
T Consensus        41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            478899999999999999999999999999999999999999999999999999888888888776654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.17  E-value=7.7e-10  Score=61.54  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++|+..++++++..|.++.++..+|.++...|++++|+..+++++.++|+++.++..++.++
T Consensus       108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444443333333333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=5.2e-11  Score=76.20  Aligned_cols=68  Identities=21%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++ +.+|+++++++|++..++.+++.++...|+
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~  549 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD  549 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC
Confidence            46778888888888888888888888888888888888 888888888888888777777777766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.16  E-value=2.6e-10  Score=64.57  Aligned_cols=61  Identities=23%  Similarity=0.225  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      ++++|+.+|+++++.+|.++.++..+|.+|..+|++++|+.+|++++.++|+++.++..++
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            3567777777777777777777777777777777777777777777777777776666666

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.16  E-value=7.7e-10  Score=63.70  Aligned_cols=68  Identities=18%  Similarity=0.182  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus       187 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            35666777777777777777777777777777777777777777777777776666666666555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.15  E-value=9e-10  Score=61.26  Aligned_cols=68  Identities=24%  Similarity=0.317  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+++++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...+
T Consensus        72 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  139 (243)
T 2q7f_A           72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE  139 (243)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            46778888888888888888888888888888888888888888888888888777777776666544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=5.7e-10  Score=67.73  Aligned_cols=68  Identities=28%  Similarity=0.289  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+| ++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        21 ~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   88 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK   88 (514)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence            57899999999999998 689999999999999999999999999999999999888888888777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.15  E-value=8.8e-10  Score=63.47  Aligned_cols=69  Identities=19%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...|+
T Consensus        36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999999999999999999999999888888887766543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.14  E-value=5.7e-10  Score=62.61  Aligned_cols=66  Identities=20%  Similarity=0.089  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++.++|++..++..++.++...
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  118 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ  118 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666666666666666666666666666665555555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=6.6e-10  Score=62.29  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF---CTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~   66 (79)
                      ++++|+..|+++++..|.+   +.+++.+|.+|..+|++++|+..|+++++++|+++.   ++..++.++..
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            5789999999999999987   479999999999999999999999999999999874   55666666554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.12  E-value=9.6e-10  Score=63.37  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..++++++.+|+++.+++.+|.++...| ++++|+..|++++.++|+++.++..++.++...
T Consensus        72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  138 (330)
T 3hym_B           72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE  138 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence            445555555555555555555555555555555 555555555555555555555555555544443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.11  E-value=4e-10  Score=63.00  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK------PDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~   63 (79)
                      ++++|+.+++++++.+|+++.++..+|.++..+|++++|+..|+++++++      |++..++..+..+
T Consensus       188 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999      9888777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=8.4e-10  Score=64.39  Aligned_cols=60  Identities=13%  Similarity=0.024  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA-AITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+..++++++++|+++.+++++|.++...|++.+ +..+++++++++|+++.+....
T Consensus       215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            57899999999999999999999999999999999987 5688999999999999777553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.10  E-value=2.5e-09  Score=59.99  Aligned_cols=67  Identities=13%  Similarity=-0.027  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++..+|++..++..++.++...|
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE  223 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence            5666677777777777777777777777777777777777777777777766665555555554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.10  E-value=1.4e-09  Score=63.43  Aligned_cols=67  Identities=19%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALT-LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF-CTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~   68 (79)
                      +++|+..|+++++ ++|++..+|..+|.++...|++++|...|+++++++|+++. ++..++..+...|
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence            3789999999999 79999999999999999999999999999999999999875 7877777766554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.10  E-value=7.4e-10  Score=68.64  Aligned_cols=65  Identities=25%  Similarity=0.379  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..++.++.
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999999999988877653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.10  E-value=1.7e-09  Score=59.35  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            3 HEAISCYERALT--LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         3 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++|+.+++++++  ..|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.+
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            334444444444  2233334444444444444444444444444444444444333333333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.09  E-value=1.7e-09  Score=61.09  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      ++++|+.+|+++++++|.++.+++.+|.+|...|++++|+..|+++++++|+++....
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence            5789999999999999999999999999999999999999999999999999984443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.08  E-value=1e-09  Score=60.42  Aligned_cols=66  Identities=6%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|++++  +| ++.+++++|.+|...|++++|+..|++++.++|+++.++..++.++...++
T Consensus        21 ~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           21 DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            4788999999885  33 789999999999999999999999999999999999999889888877654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.08  E-value=4.7e-10  Score=55.62  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQ-DNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+++++++.+|.  ++.+++.+|.++... |++++|+.++++++..+|+++
T Consensus        55 ~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           55 RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            478999999999999999  999999999999999 999999999999999999763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=8.8e-10  Score=64.04  Aligned_cols=54  Identities=19%  Similarity=0.049  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|++.
T Consensus       132 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          132 NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            578999999999999999999999999999999999999888777766666443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=1.6e-10  Score=62.66  Aligned_cols=59  Identities=10%  Similarity=-0.039  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++.++| ++.....+
T Consensus        21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~   79 (176)
T 2r5s_A           21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI   79 (176)
T ss_dssp             CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence            578999999999999999999999999999999999999999999999999 77554433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.05  E-value=1.5e-09  Score=61.71  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTY-----------------AGLAYTYHLQDNFSAAITYYHKALWLKPDD---QFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l   60 (79)
                      ++++|+..|+++++..|+++.+.                 +.+|.+|...|++++|+..|+++++..|++   +.++..+
T Consensus       112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l  191 (261)
T 3qky_A          112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGA  191 (261)
T ss_dssp             HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            36899999999999999987666                 888999999999999999999999999985   4577777


Q ss_pred             HHHHHHhhhc
Q 038754           61 SLALVDEGRH   70 (79)
Q Consensus        61 ~~~~~~~~~~   70 (79)
                      +.++...|..
T Consensus       192 ~~~~~~~g~~  201 (261)
T 3qky_A          192 MRAYIAYAEQ  201 (261)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHhccc
Confidence            8777766443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.03  E-value=2.5e-09  Score=65.38  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+++++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.++..++.++..
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.01  E-value=2.3e-09  Score=55.62  Aligned_cols=51  Identities=20%  Similarity=0.185  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      .+.++.++|.++++.|++++|+.+|+++++++|+++.++.+++.++...|+
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~   57 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK   57 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh
Confidence            467889999999999999999999999999999999999999998887664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.01  E-value=4.1e-09  Score=63.79  Aligned_cols=65  Identities=20%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.++++++..+|.++.++.++|.+|...|++++|+..|+++++++|++..++..++.++..
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999888888777654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.01  E-value=2.2e-09  Score=60.71  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+..++++++ .|.+    ..++..+|.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus        53 ~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  122 (272)
T 3u4t_A           53 YDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG  122 (272)
T ss_dssp             HHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence            4555555555555 2222    2335556666666666666666666666666655555555555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.98  E-value=4.1e-09  Score=59.07  Aligned_cols=69  Identities=17%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTY-----------------AGLAYTYHLQDNFSAAITYYHKALWLKPDDQ---FCTEMLS   61 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~   61 (79)
                      +++|+..|+++++..|+++.++                 +.+|.+|...|++.+|+..|+++++..|+++   .++..++
T Consensus       112 ~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~  191 (225)
T 2yhc_A          112 ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLME  191 (225)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHH
Confidence            6789999999999999987655                 6789999999999999999999999999987   4566777


Q ss_pred             HHHHHhhhc
Q 038754           62 LALVDEGRH   70 (79)
Q Consensus        62 ~~~~~~~~~   70 (79)
                      .++...|+.
T Consensus       192 ~~~~~~g~~  200 (225)
T 2yhc_A          192 NAYRQMQMN  200 (225)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHcCCc
Confidence            777766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.96  E-value=9.6e-10  Score=63.77  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..++++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++
T Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            578999999999999999999999999999999999999999999999999763

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.96  E-value=8.4e-09  Score=63.94  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      ++|+.+|+++++.+|.+..+|+.+|.+|.+.|++++|+..|++++.++|++..++..++.
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  449 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM  449 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444333333333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.93  E-value=4.4e-09  Score=61.05  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-------HHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF-------CTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~   67 (79)
                      ++++|+.+|++++++.|.+      ..++.++|.++..+|++++|+.+|++++.+.|++..       ++..++.++...
T Consensus       133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  212 (292)
T 1qqe_A          133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA  212 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc
Confidence            4789999999999998754      578999999999999999999999999999998753       345555555544


Q ss_pred             h
Q 038754           68 G   68 (79)
Q Consensus        68 ~   68 (79)
                      |
T Consensus       213 g  213 (292)
T 1qqe_A          213 T  213 (292)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=1.2e-08  Score=59.53  Aligned_cols=67  Identities=13%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHL-------QDNF-------SAAITYYHKALW-LKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++|+..|+++++.+|+++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..++..++..+...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            578899999999999999999999999874       5885       899999999999 7999999998888887765


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      |+
T Consensus       113 ~~  114 (308)
T 2ond_A          113 MK  114 (308)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.89  E-value=1.1e-08  Score=62.18  Aligned_cols=63  Identities=25%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +++|+..++++++.+|+++.++..+|.+|...|++++|+..|++++.++|+++.++..+....
T Consensus       431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999997776554333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.87  E-value=5.5e-09  Score=63.25  Aligned_cols=67  Identities=27%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL---QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++|+.+|+++++++|+++.++..+|.++..   .++.++|+..|+++++++|+++.++..++..+...+
T Consensus       154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~  223 (472)
T 4g1t_A          154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR  223 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            6899999999999999999999999988654   567788999999999999999988877776655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.84  E-value=6.7e-09  Score=58.50  Aligned_cols=69  Identities=23%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL--------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--------KPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.+++++++.        +|....++.++|.+|..+|++++|+.+|++++.+        +|....++..++.++
T Consensus       100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            578999999999998        4667899999999999999999999999999999        665566777777777


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       180 ~~~g~  184 (283)
T 3edt_B          180 LKQGK  184 (283)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            76654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.83  E-value=4.3e-08  Score=62.06  Aligned_cols=67  Identities=10%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD--NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +++++.+++++++.+|++..+|+..++++...+  ++++++.++.++++++|.+.-+|...+.++...+
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            566777777777777777777777777777777  5577777777777777777777766666665544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.82  E-value=2.8e-08  Score=52.15  Aligned_cols=64  Identities=17%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLL-N-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         3 ~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      .+++..++.+++.+ | ..-+++|.+|..+++.|+|..|..+++.+|++.|+|..+.......-..
T Consensus        55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            56889999999987 4 5678999999999999999999999999999999999887554444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.2e-08  Score=49.70  Aligned_cols=51  Identities=14%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...|+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   53 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE   53 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999999988877664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.81  E-value=1.2e-08  Score=59.24  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQ-DNFSAAITYYHKALWLKPDD------QFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+|++++++.+..      ..++.++|.+|... |++++|+.+|++++.+.|++      ..++..++.++...
T Consensus        92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A           92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            5789999999999998753      56899999999996 99999999999999998854      34556667766655


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      |+
T Consensus       172 g~  173 (292)
T 1qqe_A          172 GQ  173 (292)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=1.6e-07  Score=50.15  Aligned_cols=71  Identities=10%  Similarity=0.033  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH---HHHHHHhhhcCC
Q 038754            2 YHEAISCYERALTLLN-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML---SLALVDEGRHGI   72 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~   72 (79)
                      ..+++.+++.+++.+| ..-+++|.+|..++++|+|.+|..+.+.+|++.|+|..+....   .+.+...|-.++
T Consensus        58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kdGliG~  132 (144)
T 1y8m_A           58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGV  132 (144)
T ss_dssp             HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhchhhh
Confidence            3578999999999988 4678999999999999999999999999999999998776553   444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.77  E-value=3.8e-08  Score=47.29  Aligned_cols=52  Identities=31%  Similarity=0.426  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      .++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...++
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~   58 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD   58 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999999999999999999888888888876554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.76  E-value=9.1e-08  Score=56.68  Aligned_cols=66  Identities=6%  Similarity=-0.046  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTY----HLQ---DNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++++.++..++..+|++..+|+..+.++    ...   +++.+++.++.+++.++|.+..++...+.++...
T Consensus        85 ~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l  157 (306)
T 3dra_A           85 LYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF  157 (306)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            34455555555555555555555555555    444   4455555555555555555555554444444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.75  E-value=4.1e-08  Score=58.43  Aligned_cols=69  Identities=19%  Similarity=0.303  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKALWL------KPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++    .+++.+|.+|...|++++|+.+|++++.+      +|....++..++.++...|+
T Consensus        63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  141 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR  141 (411)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence            57899999999999999987    58999999999999999999999999988      45555666667776665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.74  E-value=6.1e-08  Score=54.01  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++++|+.+|+++.+.++.  ++.+++++|.+|..    .+++++|+.+|++++.+ |.++.++..++.++..
T Consensus       104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            456777777777777763  47777777777777    77777777777777777 5556666667666653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.74  E-value=1.1e-07  Score=56.40  Aligned_cols=68  Identities=7%  Similarity=0.006  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFS--AAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++++.++.++++.+|++..+|+..+.++...|.++  +++.++++++.++|.|.-++.....++...+.
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            578899999999999999999999999999999998  99999999999999999999888887776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.73  E-value=8.4e-08  Score=60.75  Aligned_cols=66  Identities=8%  Similarity=-0.004  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDN----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++|+..+++++..+|++..+|+..+.++...|+          +++++.+++++++++|++..+|...+.++...+
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            688999999999999999999999999999999          999999999999999999999999888888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.73  E-value=1.6e-07  Score=58.21  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhh
Q 038754            3 HEAISCYERALT-LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVDEG   68 (79)
Q Consensus         3 ~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~   68 (79)
                      ++|+..|+++++ ..|+++.+|..+|.++...|++++|...|+++++++|.++ .++..++......|
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  370 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence            389999999997 8999999999999999999999999999999999999985 57777666554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=2.7e-07  Score=55.27  Aligned_cols=64  Identities=9%  Similarity=0.154  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDN--FSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      .+++.++..++..+|+++.+|+..+.++...++  +++++.++.+++.++|.|.-+|.....++..
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~  156 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ  156 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344455555555555555555555555555542  4455555555555555555444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=3.2e-07  Score=54.98  Aligned_cols=66  Identities=8%  Similarity=-0.006  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++++.++.++++.+|.+..+|+..+.+....|. +++++.++.+++..+|+|.-+|.....++...
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999 69999999999999999999999988888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.72  E-value=2.2e-07  Score=56.05  Aligned_cols=65  Identities=6%  Similarity=-0.089  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++|+.++.+++.++|++..+|+..+.++...| .+++++.++..++.++|++..++...+.++...
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            45666666666666666666666666666666 366666666666666666666666665555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.71  E-value=1.4e-07  Score=49.84  Aligned_cols=59  Identities=8%  Similarity=-0.006  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            2 YHEAISCYERALTLLN-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ..+++.++..+++.+| ..-++++.+|..++++|+|+.|..+.+.+|++.|+|..+....
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4578999999999998 4589999999999999999999999999999999999776543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.70  E-value=3e-07  Score=52.32  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+|+++++  |+++.+++.+|.+|..    .+++++|+.+|+++++++  ++.++..++.++..
T Consensus        22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS   86 (273)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence            4556666666655  4555666666666666    666666666666666554  45555555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.69  E-value=2.8e-08  Score=55.91  Aligned_cols=69  Identities=25%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLL--------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--------KPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.++++++++.        |..+.++..+|.+|..+|++++|+.+|++++.+        +|....++..++.++
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  137 (283)
T 3edt_B           58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC  137 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            4789999999999883        566789999999999999999999999999998        344456666677776


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       138 ~~~g~  142 (283)
T 3edt_B          138 QNQGK  142 (283)
T ss_dssp             HTTTC
T ss_pred             HHcCC
Confidence            65543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.68  E-value=4.2e-07  Score=54.80  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQ-D-NFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +++++.++..++..+|++..+|+..+.++... + ++++++.++.+++.++|+|.-++.....++...+...
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            68999999999999999999999999999998 8 9999999999999999999999999998888877543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.68  E-value=1.6e-07  Score=54.28  Aligned_cols=69  Identities=13%  Similarity=0.034  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERAL---TLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD------QFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+|++++   +..|++.    .+++++|.+|..+|++++|+.+|++++.+.++.      ..++..++.++...
T Consensus       170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence            5789999999999   5566643    699999999999999999999999999886431      45667777777766


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      |+
T Consensus       250 g~  251 (293)
T 2qfc_A          250 EY  251 (293)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.68  E-value=1.1e-07  Score=54.41  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS----LSTYAGLAYTYHLQDNFSAAITYYHKALWL------KPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|+++++.+|++    ..++..+|.++...|++++|+.++++++.+      .|....++..++.++...|
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            4789999999999999998    478889999999999999999999999887      3333445555666555444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.67  E-value=6.6e-08  Score=57.53  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cC-CCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALW-----LK-PDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.++++++++.+..      ..+++++|.+|..+|++++|+.+|++++.     .+ |....++..++.++...|
T Consensus       199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG  278 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence            4678888888888775433      25788888888888888888888888888     35 666666677777766554


Q ss_pred             h
Q 038754           69 R   69 (79)
Q Consensus        69 ~   69 (79)
                      +
T Consensus       279 ~  279 (383)
T 3ulq_A          279 K  279 (383)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.67  E-value=5.3e-07  Score=52.14  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKAL---WLKPDDQ----FCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++..+..      ..+++++|.+|..+|++++|+.+|++++   +..|++.    .++.+++.++...
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence            4789999999999876543      6799999999999999999999999999   5566654    4556667766654


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      ++
T Consensus       210 ~~  211 (293)
T 2qfc_A          210 SR  211 (293)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=2e-07  Score=46.36  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           16 LNRSLSTYAGLAYTYHLQDN---FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|+++..+..+|.+++..++   ..+|...++++++++|+++.+...++......|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~   58 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR   58 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC
Confidence            68999999999999987777   7999999999999999999999888887776554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.65  E-value=1.9e-07  Score=55.19  Aligned_cols=64  Identities=19%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNR--SLSTYAGLAYTYHL-----QDNFSAAITYYHKALWLKPDD-QFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~   65 (79)
                      .++|...++++++++|+  +..+|..+|..|.+     .|+.+.|..+|+++++++|+. ......+++.+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            35788899999999999  77899999999999     499999999999999999975 655555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.65  E-value=4.1e-08  Score=56.82  Aligned_cols=68  Identities=12%  Similarity=0.014  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTL-------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD------QFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~   67 (79)
                      ++++|+.+|+++++.       .+....+++++|.+|..+|++++|+.++++++.+.+..      ..++..++.++...
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            478999999999952       22345689999999999999999999999999986544      46677788887776


Q ss_pred             h
Q 038754           68 G   68 (79)
Q Consensus        68 ~   68 (79)
                      |
T Consensus       250 g  250 (293)
T 3u3w_A          250 E  250 (293)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.64  E-value=1.5e-07  Score=55.52  Aligned_cols=68  Identities=22%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSL----STYAGLAYTYHLQDNFSAAITYYHKALWLK------PDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|+++++..|.++    .++..+|.++...|++++|+.+|++++.+.      |....++..++.++...|
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            47899999999999999884    688999999999999999999999998873      233355556666665544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.62  E-value=1e-07  Score=54.44  Aligned_cols=49  Identities=33%  Similarity=0.337  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            1 IYHEAISCYERALTL--------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ++++|+.+++++++.        .|..+.++..+|.+|..+|++++|+.+|++++.+
T Consensus       168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            478999999999998        6777889999999999999999999999999985

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.61  E-value=1.1e-07  Score=55.57  Aligned_cols=52  Identities=13%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++++|+.+|++++++.+..      ..++.++|.+|..+|++++|+.+|++++.+.|+
T Consensus       130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3567777777777766533      456777777777777777777777777776553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=8.2e-07  Score=50.50  Aligned_cols=60  Identities=27%  Similarity=0.162  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +++|+.+|+++++.+  ++.+++++|.+|..    .+++++|+.+|++++..+  ++.++..++.++.
T Consensus        58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  121 (273)
T 1ouv_A           58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH  121 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence            445555555555553  45555555555555    555555555555555542  4444444444444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.60  E-value=3.7e-07  Score=53.64  Aligned_cols=59  Identities=20%  Similarity=0.066  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLL--NR-SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+.+|++++...  |. .+.+++.+|.++.++|+.++|...|++++..+|+ +.+...|
T Consensus       186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            4678888888887544  44 5678888888888888888888888888888888 6555444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=8.1e-08  Score=54.85  Aligned_cols=69  Identities=23%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLL--------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--------KPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~   64 (79)
                      ++++|+.++++++++.        |....++..+|.++...|++++|+.+|++++.+        +|....++..++.++
T Consensus       126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  205 (311)
T 3nf1_A          126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY  205 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4789999999999884        556788999999999999999999999999998        555556677777777


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       206 ~~~g~  210 (311)
T 3nf1_A          206 LKQGK  210 (311)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            66554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.58  E-value=1.1e-06  Score=54.55  Aligned_cols=60  Identities=12%  Similarity=0.001  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      ++++|...|+++++..|.++.+|..++..+...|++++|...|++++...| +...|..+.
T Consensus        27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~   86 (530)
T 2ooe_A           27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999 454554444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.58  E-value=5.3e-07  Score=54.79  Aligned_cols=53  Identities=21%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+..+++++.++| ++.+|..+|.++...|++++|+..|++|+.++|.++
T Consensus       292 d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            57899999999999996 588899999999999999999999999999999876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.57  E-value=2.5e-07  Score=51.53  Aligned_cols=64  Identities=22%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPD--DQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~   66 (79)
                      ++++|+.+|+++.+  +.++.+++++|.+|..    .+++.+|+.+|++++...|.  ++.++..++.++..
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            46777888887744  4577888888888876    77888888888888888773  46677777777664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.53  E-value=2.7e-07  Score=53.36  Aligned_cols=69  Identities=17%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCCH----HHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWL---KPDDQ----FCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~----~~~~~l~~~~~~~   67 (79)
                      ++++|+.+++++++..+..      ..++.++|.+|..+|++++|+.+|++++++   .|.+.    .++.+++.++...
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            4689999999999965432      347999999999999999999999999953   11222    3555666666655


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      ++
T Consensus       210 ~~  211 (293)
T 3u3w_A          210 SR  211 (293)
T ss_dssp             TC
T ss_pred             hH
Confidence            43

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.53  E-value=2e-07  Score=50.56  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCCH----HHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALT------LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL---KPDDQ----FCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~----~~~~~l~~~~~~~   67 (79)
                      ++++|+..++++++      ..+....++.++|.++..+|++++|+..+++++.+   .|+++    .++..++.++...
T Consensus        41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  120 (203)
T 3gw4_A           41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF  120 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence            47889999999998      44456789999999999999999999999999998   55443    3455556655554


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      |+
T Consensus       121 g~  122 (203)
T 3gw4_A          121 GD  122 (203)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.53  E-value=6.4e-07  Score=55.27  Aligned_cols=70  Identities=9%  Similarity=-0.068  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL-----LNRSL---STYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQ---FCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~   64 (79)
                      +|++|+..+++++++     .|+++   ..+.++|.+|..+|++++|+.++++++.+     .|++|   ..+.+++.++
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            478999999999985     45554   67899999999999999999999999976     67887   4456677777


Q ss_pred             HHhhhc
Q 038754           65 VDEGRH   70 (79)
Q Consensus        65 ~~~~~~   70 (79)
                      ...|+.
T Consensus       393 ~~qg~~  398 (433)
T 3qww_A          393 MGLENK  398 (433)
T ss_dssp             HHTTCH
T ss_pred             HhccCH
Confidence            776653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.51  E-value=2.4e-07  Score=55.19  Aligned_cols=68  Identities=22%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALW-----LKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|.+++++.+.      ...++.++|.+|..+|++++|+.+|++++.     .+|....+...++.++...|
T Consensus       197 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g  275 (378)
T 3q15_A          197 HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG  275 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence            356677777776665321      235666777777777777777777777776     55555555555666555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.49  E-value=2.3e-07  Score=48.09  Aligned_cols=51  Identities=25%  Similarity=0.430  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      ++++|+.+++++++..+..      ..++..+|.++...|++++|+..+++++.+.+
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A           24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4677888888888775432      24778888888888888888888888887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.49  E-value=7.2e-07  Score=55.05  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHHH
Q 038754            1 IYHEAISCYERALTL-----LNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQFCTEM   59 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~   59 (79)
                      +|++|+.++++++++     .|++   ...++++|.+|..+|++++|+..|++|+.+     .|++|.+...
T Consensus       355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            588999999999975     3555   467999999999999999999999999986     7899866653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.49  E-value=4.6e-06  Score=43.70  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.++..++.++..
T Consensus        41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            45688888888876  588999999999988    88999999999999876  677778888887765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.47  E-value=2.1e-07  Score=55.33  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTL------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL------KPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.++++++++      .|....++..+|.+|..+|++++|+.+|++++.+      .|....++..++.++...|
T Consensus       101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  180 (411)
T 4a1s_A          101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG  180 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence            478999999999998      5777899999999999999999999999999998      4455566777777777666


Q ss_pred             h
Q 038754           69 R   69 (79)
Q Consensus        69 ~   69 (79)
                      +
T Consensus       181 ~  181 (411)
T 4a1s_A          181 K  181 (411)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.47  E-value=6.4e-07  Score=46.38  Aligned_cols=69  Identities=25%  Similarity=0.303  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--C----HHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD--D----QFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+++++++..+..      ..++.++|.++...|++++|+.++++++.+.+.  +    ..++..++.++...|
T Consensus        64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g  143 (164)
T 3ro3_A           64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG  143 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence            4789999999999876543      678999999999999999999999999987432  2    244555666655544


Q ss_pred             h
Q 038754           69 R   69 (79)
Q Consensus        69 ~   69 (79)
                      +
T Consensus       144 ~  144 (164)
T 3ro3_A          144 N  144 (164)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.47  E-value=1.9e-07  Score=55.11  Aligned_cols=52  Identities=25%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            2 YHEAISCYERALTLLNRSL------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +++|+.++++++++.+...      .++.++|.+|..+|++++|+.+|++++.+.|..
T Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            5566666666666554332      266666666666666666666666666665433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.46  E-value=2.1e-07  Score=55.41  Aligned_cols=69  Identities=13%  Similarity=0.264  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHhh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTL---LN---RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-------FCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~   67 (79)
                      ++++|+.+|++++++   .+   ..+.+++.+|.+|..+|+++.|+.++++++.+.+...       .++..++.++...
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  197 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL  197 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence            578999999999997   23   3468999999999999999999999999999854332       4555566666554


Q ss_pred             hh
Q 038754           68 GR   69 (79)
Q Consensus        68 ~~   69 (79)
                      |+
T Consensus       198 g~  199 (383)
T 3ulq_A          198 KQ  199 (383)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.42  E-value=1.7e-06  Score=54.12  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLL-----NRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQ---FCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~   64 (79)
                      +|++|+..+++++++.     |++   ...+.++|.+|..+|++++|+.++++++.+     .|++|   ..+.+++.++
T Consensus       324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  403 (490)
T 3n71_A          324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN  403 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4789999999999853     444   468999999999999999999999999986     67887   4456677777


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       404 ~~~G~  408 (490)
T 3n71_A          404 WHAGH  408 (490)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            76654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.41  E-value=3.1e-06  Score=44.36  Aligned_cols=56  Identities=21%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+..  ++.+...+
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l  135 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL  135 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            578999999999987  689999999999999    999999999999999984  44444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.41  E-value=3.4e-07  Score=53.41  Aligned_cols=67  Identities=16%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNR--S----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD------QFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|++++++.+.  +    ..++.++|.+|.. |++++|+.+|++++.+.|..      ..++..++.++...|
T Consensus        91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  169 (307)
T 2ifu_A           91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ  169 (307)
T ss_dssp             CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence            356777788887777432  1    4577788888877 88888888888888876643      244455555555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.41  E-value=8.7e-07  Score=52.74  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            1 IYHEAISCYERALT-----LLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         1 ~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++++|+.+++++++     .+|..+.+++++|.++..+|++++|+.++++++.+.+.
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            47899999999999     78888999999999999999999999999999998543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.38  E-value=2.1e-06  Score=41.91  Aligned_cols=47  Identities=13%  Similarity=0.010  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhhh
Q 038754           23 YAGLAYTYHLQDNFSAAITYYHKALWLKPDDQF-CTEMLSLALVDEGR   69 (79)
Q Consensus        23 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~   69 (79)
                      .+..|.++...|++++|+..|+++++++|+++. ++..++.++...++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~   50 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD   50 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC
Confidence            367899999999999999999999999999998 99999988887664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=2.3e-06  Score=52.66  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHHH
Q 038754            1 IYHEAISCYERALTL-----LNRSL---STYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQFCTEM   59 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~   59 (79)
                      +|++|+.++++++.+     .|++|   ..++++|.+|..+|++++|+..|++|+.+     .|++|.....
T Consensus       344 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          344 LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            588999999999975     35554   67999999999999999999999999986     7899866544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=2.4e-06  Score=53.44  Aligned_cols=58  Identities=14%  Similarity=0.079  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHH
Q 038754            1 IYHEAISCYERALTL-----LNRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~   58 (79)
                      +|++|+.++++++++     .|++   ...++++|.+|..+|++++|+..|++|+.+     .|++|.+..
T Consensus       366 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  436 (490)
T 3n71_A          366 AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD  436 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            588999999999875     3555   468999999999999999999999999985     789985543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.32  E-value=5.1e-07  Score=51.66  Aligned_cols=50  Identities=26%  Similarity=0.468  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            2 YHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +++|+.+++++++..+..      ..++..+|.++...|++++|+.++++++.+.|
T Consensus       199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  254 (338)
T 3ro2_A          199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  254 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            455555665555554321      22556666666666666666666666665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.27  E-value=3.3e-06  Score=49.68  Aligned_cols=70  Identities=11%  Similarity=-0.018  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNR--SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK--PD-DQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~   70 (79)
                      +|++|+.+|+++.+..+.  ...+++++|.++..+|++++|+.+|++++...  |. .+.++..++.++...|+.
T Consensus       150 r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          150 RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence            467788888766554311  13589999999999999999999999998654  55 445777778888777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.25  E-value=6.1e-06  Score=50.84  Aligned_cols=69  Identities=6%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH---HHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLL-----NRS---LSTYAGLAYTYHLQDNFSAAITYYHKALWL-----KPDDQ---FCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~   64 (79)
                      +|++|+..+++++++.     |++   ...+.++|.+|..+|++++|+.++++++.+     .|++|   ..+.+++.++
T Consensus       302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~  381 (429)
T 3qwp_A          302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQ  381 (429)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHH
Confidence            4789999999999753     455   468999999999999999999999999976     67887   4455677777


Q ss_pred             HHhhh
Q 038754           65 VDEGR   69 (79)
Q Consensus        65 ~~~~~   69 (79)
                      ...|+
T Consensus       382 ~~~g~  386 (429)
T 3qwp_A          382 LHQGM  386 (429)
T ss_dssp             HHTTC
T ss_pred             HhcCC
Confidence            76654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.23  E-value=5.6e-06  Score=44.73  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL------KPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|...++.+....+..+.++..+|.++...|++++|+..|++++.+      .|....++..++.++...|+
T Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4677877555554433367899999999999999999999999999994      33334556666666665543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.20  E-value=6.7e-06  Score=50.54  Aligned_cols=47  Identities=13%  Similarity=0.083  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLK   50 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~   50 (79)
                      +++|+.+|+++.+.+  ++.+++++|.+|..    .+++++|+.+|++++..+
T Consensus       383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            445555555555542  45555555555555    555555555555555555

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.19  E-value=1.3e-05  Score=49.21  Aligned_cols=59  Identities=12%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD-----NFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+|+++.+.+  ++.+++++|.+|. .|     ++.+|+.+|+++.   |+++.++..++.++..
T Consensus       267 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          267 VEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            455666666655433  5666666666655 44     6666666666666   5566555555555543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.16  E-value=1.6e-05  Score=46.90  Aligned_cols=68  Identities=15%  Similarity=0.046  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLL--------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD-----QFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~   67 (79)
                      ++++|+..+++++++.        |....++.++|.++...|++++|...+++++.+.|..     ..++..++.+....
T Consensus       108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  187 (373)
T 1hz4_A          108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR  187 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence            4678888888888875        3345678889999999999999999999999887752     23344455544443


Q ss_pred             h
Q 038754           68 G   68 (79)
Q Consensus        68 ~   68 (79)
                      |
T Consensus       188 g  188 (373)
T 1hz4_A          188 G  188 (373)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.15  E-value=2.7e-05  Score=47.87  Aligned_cols=61  Identities=11%  Similarity=-0.002  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|++++...  ++.++..++.++..
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence            56788888888876  578888888888888    788888888888888754  56667777777664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.15  E-value=4.1e-06  Score=49.57  Aligned_cols=53  Identities=13%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRS-LSTYAGLAYTYHL-QDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +.++|..+|+++++++|+. ..+++.+|..+.. +|+++.|...+++++..+|..
T Consensus       219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            4689999999999999975 9999999999987 599999999999999998873

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.13  E-value=9.3e-06  Score=49.87  Aligned_cols=58  Identities=12%  Similarity=-0.022  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQ----DNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ++|+.+|+++.+.++.++..++++|.+|...    +++++|+.+|+++.   |+++.++..++.+
T Consensus       196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            3444555555555544444444455444333    34444444444444   4444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.12  E-value=5.8e-05  Score=45.99  Aligned_cols=67  Identities=9%  Similarity=-0.039  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHH--------------------------------------------HHHHcCCHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAY--------------------------------------------TYHLQDNFS   37 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~   37 (79)
                      +.+|+.+|+++++++|+++.++..++.                                            ++...|+++
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d  294 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD  294 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence            356777777777777777666664443                                            444578999


Q ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           38 AAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        38 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|+..+++++.++|+ ..++..++.++.-.|+
T Consensus       295 ~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~  325 (372)
T 3ly7_A          295 ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM  325 (372)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC
Confidence            999999999999975 5555666666655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=3.4e-05  Score=41.62  Aligned_cols=65  Identities=11%  Similarity=-0.027  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-C-CCHHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQD---NFSAAITYYHKALWLK-P-DDQFCTEMLSLALVD   66 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~   66 (79)
                      ...+...|.+.+..++.+..+.+++|+++.+.+   +.++++..++.+++.+ | ++..+...++-+.-.
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k   83 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   83 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence            346778888888889999999999999999999   6679999999999998 7 445555555554433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.00  E-value=2.8e-05  Score=46.31  Aligned_cols=58  Identities=14%  Similarity=-0.027  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 038754            1 IYHEAISCYERALTL----------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEML   60 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   60 (79)
                      ++++|...++.+++.          +|+++.++.++..+...+|+  +|.++++++.+.+|++++....-
T Consensus       226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence            578999999988887          58899999999999999998  89999999999999999777553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.97  E-value=1.1e-05  Score=47.60  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRS------LSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      +++|+..+++++.+.+..      ..++.++|.++..+|++++|+..|++++.+
T Consensus        69 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           69 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344455555544443321      122444555555555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.91  E-value=8e-05  Score=37.15  Aligned_cols=51  Identities=16%  Similarity=0.138  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-------CCCHHHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLK-------PDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++.-++.+|..++..++|..|+.+|+.|++..       +..+.++..++.++...|+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~   61 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD   61 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC
Confidence            46778899999999999999999999999863       2345667777877776664

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.74  E-value=0.00036  Score=41.58  Aligned_cols=51  Identities=10%  Similarity=-0.051  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLN--RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      ++++|+.++.+.+..+|  .+..++...+.++.++|+.+.|.+.+++..+.+|
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            46788888988888886  7888888889999999999999999988888888

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=0.00049  Score=43.37  Aligned_cols=66  Identities=23%  Similarity=0.214  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++....-++.+..++...+...
T Consensus       168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999998888899999998888764

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.66  E-value=0.00088  Score=39.28  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      +.++++......++.+|.|......+...+.-.|+++.|...++.+.+++|+.......+..+
T Consensus        12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A           12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999999999987555444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.60  E-value=0.0018  Score=35.07  Aligned_cols=62  Identities=13%  Similarity=-0.091  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSL   62 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   62 (79)
                      +.++|...|+.++.++...+.+|...|..-.++|+...|...+.+++.+.|.+.......-.
T Consensus        75 D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~  136 (161)
T 4h7y_A           75 EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR  136 (161)
T ss_dssp             CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            46778899999999988899999999999999999999999999999999988755444333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.58  E-value=0.00071  Score=42.29  Aligned_cols=57  Identities=9%  Similarity=-0.078  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS   61 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   61 (79)
                      .....|++++...|.++..|..++..+...|+.+.|...|++|+.. |.+...+..++
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~  253 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG  253 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999 98875554443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.55  E-value=0.00062  Score=44.31  Aligned_cols=64  Identities=14%  Similarity=0.021  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            5 AISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAI-TYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         5 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ....|++++...|.++..|+.++..+...|+..+|. ..|++|+...|.+...+..+.......+
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT  392 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            456799999999999999999999999999999997 9999999999999866666665555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=9.9e-05  Score=44.17  Aligned_cols=53  Identities=13%  Similarity=0.009  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRSL-----------------STYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +|++|+..|.++++..|...                 .++..+|.+|..+|++++|+..|.+++.+.+..
T Consensus        19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~   88 (434)
T 4b4t_Q           19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF   88 (434)
T ss_dssp             CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred             CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            58899999999999988653                 368999999999999999999999999876554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00078  Score=44.42  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      +++-|+.+.++++...|.+-.+|+.|+.||..+|+++.|+-.+.-+
T Consensus       352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5788999999999999999999999999999999999999665554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.38  E-value=0.00096  Score=46.99  Aligned_cols=29  Identities=24%  Similarity=0.214  Sum_probs=16.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      +++.+|+.+|.++...|++++|+..|.++
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            44555555555555555555555555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.36  E-value=0.00029  Score=38.56  Aligned_cols=48  Identities=19%  Similarity=0.077  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSL---------STYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |+.|+.....++.+..+++         .++..+|.+++..++|..|...|+++|++
T Consensus        36 Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           36 HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            5667777777666554333         48899999999999999999999999764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.34  E-value=0.0012  Score=43.01  Aligned_cols=51  Identities=10%  Similarity=-0.025  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD   52 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   52 (79)
                      ++.|..+|+.+++..|+++..|..++......|+.+.|...|++++...|+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            568889999999999999999989999888899999999999999998874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.29  E-value=0.00063  Score=42.44  Aligned_cols=55  Identities=25%  Similarity=0.276  Sum_probs=38.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +|++|..+|.++        ..|..+|.++.++|++++|+.+|+++     +++.+|.....+....|
T Consensus       137 ~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          137 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC
Confidence            356777777766        46778888888888888888888888     35555655555554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.28  E-value=0.0051  Score=38.46  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=33.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754           26 LAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus        26 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      +..+|.+.|++++|+..+++++.+++.+-..+..++.++..
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            44678888999999999999999999998777777666553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00052  Score=41.05  Aligned_cols=51  Identities=12%  Similarity=0.064  Sum_probs=41.2

Q ss_pred             CHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLL------NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +|.+|+.++++++...      +....++...|.+|..+|++.+|...|++++.+.+
T Consensus       150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            4678888888887653      33467899999999999999999999999988743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.12  E-value=0.0023  Score=45.23  Aligned_cols=48  Identities=21%  Similarity=0.301  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++|+..|.++     +++..|...|.++.+.|++++|+++|..+.+..+..
T Consensus      1120 ~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence            478899999775     889999999999999999999999999999988654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.40  E-value=0.032  Score=29.15  Aligned_cols=48  Identities=13%  Similarity=-0.081  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHccC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA---AITYYHKALWLK   50 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~   50 (79)
                      ..+...|.+....++.+..+.+++|+++.+.....+   ++..++..++.+
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~   68 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG   68 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            456677888888888999999999999999998888   999999999876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.19  E-value=0.028  Score=34.18  Aligned_cols=48  Identities=19%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++.+++..++.++..+|-+-.+|..+-.++...|+..+|+..|+++-+
T Consensus       186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.10  E-value=0.028  Score=30.73  Aligned_cols=45  Identities=24%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHhhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLN-------------------------RSLSTYAGLAYTYHLQDNFSAAITYYHK   45 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~   45 (79)
                      .|..|...|+++++...                         .+.++.|.++.||.+++++++|+..++.
T Consensus        78 eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           78 EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            36678888888755331                         1137889999999999999999998754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.06  Score=35.79  Aligned_cols=49  Identities=8%  Similarity=-0.077  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ..+..-+..+...|+++.|+.+.++|+.+-|+...+|..+..++...++
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d  386 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE  386 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc
Confidence            4566667778889999999999999999999999999999999988765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.43  E-value=0.2  Score=31.34  Aligned_cols=52  Identities=8%  Similarity=0.028  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHH
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQD-NFSAAITYYHKALWLKPDDQF   55 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~   55 (79)
                      +.|...|.++ +..+.....|...|..-+..+ +++.|...|+.+++..|+++.
T Consensus       303 ~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~  355 (493)
T 2uy1_A          303 ELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL  355 (493)
T ss_dssp             HHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence            4455555555 322223444444444444333 355555666666555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.1  Score=28.73  Aligned_cols=43  Identities=19%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ++.|....+..     ++...|..+|......|+++-|..+|+++=..
T Consensus        21 l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B           21 LDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             HHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            44555554433     67899999999999999999999999876443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.99  E-value=0.096  Score=33.18  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++..+|.+......+..|..+|.+|..+.|++...+..++-+....+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~  200 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc
Confidence            66778999999999999999999999999999888888877766543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=94.98  E-value=0.057  Score=26.11  Aligned_cols=23  Identities=35%  Similarity=0.332  Sum_probs=14.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcc
Q 038754           27 AYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        27 ~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      |.-.-..|++.+|+.+|..+++.
T Consensus        26 Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           26 AVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHH
Confidence            33445677777777777666653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=94.90  E-value=0.061  Score=25.94  Aligned_cols=19  Identities=37%  Similarity=0.491  Sum_probs=12.1

Q ss_pred             HHHcCCHHHHHHHHHHHHc
Q 038754           30 YHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~   48 (79)
                      .-+.|++.+|+.+|.+++.
T Consensus        21 ~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           21 ADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH
Confidence            3466777776666666654

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=94.59  E-value=0.15  Score=24.09  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=32.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 038754           24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLA   63 (79)
Q Consensus        24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   63 (79)
                      ..+|..+...|++++|..+|-+|+..-|+......-+...
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~t   60 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT   60 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            4578899999999999999999999999987555544443

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=94.55  E-value=0.27  Score=32.10  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      .......|...+..|+|..|.....+++..+|+|..++...++++...|....
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~  501 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  501 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            45566778888899999999999999999999999999999999999887653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.37  E-value=0.29  Score=26.43  Aligned_cols=44  Identities=16%  Similarity=-0.058  Sum_probs=35.0

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            7 SCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ..+...+..++-+|..+..+|.+|.+.|+.++|.....+|.+..
T Consensus       112 ki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A          112 EIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            34444455566779999999999999999999999999998754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.78  E-value=0.64  Score=28.27  Aligned_cols=48  Identities=17%  Similarity=-0.051  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           22 TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        22 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +...++.++...|++.+++..+..++..+|-+..++..+-.++...|+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr  220 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR  220 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            455677788899999999999999999999998777777777665554

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=93.25  E-value=0.2  Score=24.64  Aligned_cols=19  Identities=11%  Similarity=0.349  Sum_probs=11.0

Q ss_pred             HHHcCCHHHHHHHHHHHHc
Q 038754           30 YHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~   48 (79)
                      .-..|++.+|+.+|..++.
T Consensus        25 ~D~~g~y~eAl~~Y~~Aie   43 (93)
T 1wfd_A           25 LDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHH
Confidence            3455666666666555554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.10  E-value=0.2  Score=27.19  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCCC
Q 038754           14 TLLNRSLSTYAGLAYTYHLQDNF------SAAITYYHKALWLKPD   52 (79)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~p~   52 (79)
                      -..|++++.|..+....-+.|++      +.-+..|++|+..-|-
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp   51 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP   51 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence            35799999999999999999999      8999999999987663

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=92.91  E-value=0.33  Score=24.05  Aligned_cols=28  Identities=18%  Similarity=0.088  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      +..+...+..+.+.|+|++||.+.+++.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            4566778889999999999988777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.54  E-value=0.27  Score=31.71  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038754           17 NRSLSTYAGLAYTYHLQDNFSAAITYYHKA   46 (79)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   46 (79)
                      .+++..|..+|..+.+.++++.|+.+|.++
T Consensus       678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          678 ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            357899999999999999999999999986

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.49  E-value=0.79  Score=25.73  Aligned_cols=57  Identities=16%  Similarity=-0.021  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHh--hC---------------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 038754            1 IYHEAISCYERALT--LL---------------NRSLS-TYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~--~~---------------~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   57 (79)
                      +|..|+.++..+++  .+               |.+.+ .+..+|..+.+.|+-++|+..|..++..+|=.+..-
T Consensus        77 dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           77 DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            57889999999983  22               33443 556789999999999999999999999998766544

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=92.32  E-value=0.26  Score=25.30  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=11.9

Q ss_pred             HHHcCCHHHHHHHHHHHHc
Q 038754           30 YHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al~   48 (79)
                      .-..|++.+|+.+|..++.
T Consensus        28 ~D~ag~y~eAl~lY~~Aie   46 (117)
T 2cpt_A           28 EDKAGNYEEALQLYQHAVQ   46 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH
Confidence            3455777776666666655

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=92.21  E-value=0.34  Score=23.22  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=14.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHcc
Q 038754           28 YTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        28 ~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      .-.-..|++++|+.+|..++..
T Consensus        21 v~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           21 IDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            3344667777777777776653

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.98  E-value=0.32  Score=23.59  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=16.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           26 LAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        26 ~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      .|.-.-..|++++|+.+|..++..
T Consensus        22 ~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           22 RAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334445778888888887777753

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=91.84  E-value=0.31  Score=24.19  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 038754           24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQF   55 (79)
Q Consensus        24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   55 (79)
                      ..+|..+...|+++.|+.+|-+|+..-|+...
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~   55 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   55 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            35788888999999999999999999887653

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.37  E-value=0.43  Score=24.54  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=9.0

Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 038754           30 YHLQDNFSAAITYYHKAL   47 (79)
Q Consensus        30 ~~~~~~~~~A~~~~~~al   47 (79)
                      .-..|+.+.|+.+|++.+
T Consensus        32 ~DE~g~k~~Al~lYk~GI   49 (116)
T 2dl1_A           32 TDELGQKEEAKNYYKQGI   49 (116)
T ss_dssp             HHHHTCHHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHH
Confidence            334466555555554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.55  E-value=0.49  Score=32.17  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=34.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            9 YERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      .++.+..-|.++..-|.+|.+|...|++++|..+|++|-.
T Consensus       829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~  868 (950)
T 4gq2_M          829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL  868 (950)
T ss_dssp             HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            3556666788888889999999999999999999998763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=89.55  E-value=2.7  Score=26.50  Aligned_cols=28  Identities=11%  Similarity=0.185  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      ...|..+-..|.+.|+.++|...|++..
T Consensus       140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          140 LRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3334444444444444444444444433

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.67  E-value=1  Score=28.92  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRS-------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      |++|..+..++.  .|.+       ..-++.+|.++.-+++|.+|..++..|++.-|.+.
T Consensus       247 y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          247 VDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             STTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            456666666663  3322       45667789999999999999999999999877553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.59  E-value=3.2  Score=26.15  Aligned_cols=65  Identities=8%  Similarity=0.023  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLN-RSLSTYAGLAYTYHLQDNFSAAITYYHKALWL--KPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~   67 (79)
                      .+.|...|++.....- .+..+|..+-..|.+.|++++|+..|++..+.  .|+ ...+..+..++...
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~  153 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRK  153 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHC
Confidence            4678888888776652 36888999999999999999999999987764  454 44444444444433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.48  E-value=0.97  Score=31.28  Aligned_cols=38  Identities=13%  Similarity=0.061  Sum_probs=32.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754           10 ERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      +..+...|.++...|.+|.++...|++++|..+|+++-
T Consensus       832 ~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa  869 (1139)
T 4fhn_B          832 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  869 (1139)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            34455667888888999999999999999999998874

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=88.14  E-value=1.4  Score=23.21  Aligned_cols=29  Identities=10%  Similarity=-0.086  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYT   29 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   29 (79)
                      +|.+|..+.+.+++..|++..+......+
T Consensus        93 dY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           93 EYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            58899999999999999999887766554

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=86.83  E-value=2  Score=23.94  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ..-+|-+|..+...++|.+|...+..|++.-|...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~   48 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS   48 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence            45678899999999999999999999999877653

>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=85.48  E-value=0.58  Score=22.94  Aligned_cols=14  Identities=21%  Similarity=0.522  Sum_probs=7.6

Q ss_pred             CCHHHHHHHHHHHH
Q 038754           34 DNFSAAITYYHKAL   47 (79)
Q Consensus        34 ~~~~~A~~~~~~al   47 (79)
                      |+.+.|+.+|++.+
T Consensus        33 G~k~~A~~~YkkGi   46 (89)
T 3eab_A           33 GQKEQAVEWYKKGI   46 (89)
T ss_dssp             SSGGGSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555555544

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=85.24  E-value=3  Score=22.40  Aligned_cols=50  Identities=12%  Similarity=0.056  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            5 AISCYERALTLL--NRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         5 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      +..+|.-+....  ...+..|-..|..+-..|++.+|...|+.+++....+.
T Consensus        84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~  135 (152)
T 4a1g_A           84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR  135 (152)
T ss_dssp             HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            344555444433  45678888999999999999999999999999887665

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=84.79  E-value=3.4  Score=25.78  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            5 AISCYERALTLL-----NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         5 A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++.+|.+++...     ..+...|..+|-.+++.+++.+|+..|-.+-.
T Consensus       276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~  324 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY  324 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence            455566666543     34567778888899999999999999887754

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.28  E-value=3.1  Score=24.91  Aligned_cols=26  Identities=12%  Similarity=-0.018  Sum_probs=24.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038754           18 RSLSTYAGLAYTYHLQDNFSAAITYY   43 (79)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~A~~~~   43 (79)
                      .+|..+..+|..|..-+++.+|..+|
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            68999999999999999999999887

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}

Probab=84.08  E-value=0.22  Score=32.70  Aligned_cols=52  Identities=8%  Similarity=0.043  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      ......|...+..|+|+.|....+.++..+|+|..++...++++...|....
T Consensus       462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  513 (668)
T 2yhe_A          462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE  513 (668)
Confidence            4455567777789999999999999999999999999999999988876553

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.59  E-value=6  Score=24.02  Aligned_cols=40  Identities=15%  Similarity=0.010  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038754            4 EAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYY   43 (79)
Q Consensus         4 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~   43 (79)
                      .|+.|-.+.=...-.+|..+..+|..|.+-+++.+|...|
T Consensus       120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4555554421223368999999999999999999999887

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=80.75  E-value=5.8  Score=25.27  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             HHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            5 AISCYERALTLL-----NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         5 A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++.+|.+++...     ..+...|..+|-.+++.+++.+|+..|-.+-.
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~  346 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT  346 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence            445566655543     34567778888899999999999999887754

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=80.21  E-value=6.2  Score=25.03  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754            5 AISCYERALTLL-----NRSLSTYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus         5 A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ++.+|.+++...     ..+...|..+|-.+++.+++.+|+..|..+-.
T Consensus       283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~  331 (489)
T 4gq4_A          283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT  331 (489)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence            445555555532     34567778889999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA+  Y +AL +     + ++ LA     Q     A+ +Y +A+ + P        + 
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 62  LALVDEG 68
             L +  
Sbjct: 381 NTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-05
 Identities = 17/69 (24%), Positives = 25/69 (36%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
              AI  Y RA+ L       Y  LA     + + + A   Y+ AL L P        L+
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 62  LALVDEGRH 70
               ++G  
Sbjct: 313 NIKREQGNI 321

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
           +  A++ Y RAL+L       +  LA  Y+ Q     AI  Y +A+ L+P        L+
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 62  LALVDEGRH 70
            AL ++G  
Sbjct: 279 NALKEKGSV 287

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 7e-05
 Identities = 4/52 (7%), Positives = 12/52 (23%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
          +  A     +       +      L+  +        +  +   A+   P  
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 27/69 (39%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
             EA  CY  AL L      +   LA     Q N   A+  Y KAL + P+       L+
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 62  LALVDEGRH 70
             L  +G+ 
Sbjct: 347 SVLQQQGKL 355

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.9 bits (90), Expect = 1e-05
 Identities = 8/69 (11%), Positives = 20/69 (28%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
            +A+     A+    +  S  +       +  +F  A     +++ L P+       L 
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71

Query: 62 LALVDEGRH 70
            +      
Sbjct: 72 HLVKAAQAR 80

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
               +     + + + +       L      ++  S A +YY  A  L P +      L+
Sbjct: 136 TSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA 193

Query: 62  LALVDEGRH 70
           +    +G H
Sbjct: 194 ILASSKGDH 202

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (72), Expect = 0.004
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPD 52
             +A S Y  A  L+  +   Y  LA     + +    I YY +++ +K  
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (76), Expect = 8e-04
 Identities = 6/52 (11%), Positives = 13/52 (25%)

Query: 2   YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD 53
                +      +L      T   L   Y    +  +A   +  A+     +
Sbjct: 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 16/69 (23%), Positives = 23/69 (33%)

Query: 2  YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLS 61
          Y EA +CY RA+T        Y   A  Y        A+    +AL L          L 
Sbjct: 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79

Query: 62 LALVDEGRH 70
             ++   +
Sbjct: 80 QCQLEMESY 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.58
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.58
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.53
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.5
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.45
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.34
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.33
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.32
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.3
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.98
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.86
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.8
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.7
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.57
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.29
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.12
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.11
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.91
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.57
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.55
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	95.24
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.88
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	94.88
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	93.37
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.2
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	90.61

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.3e-16  Score=85.59  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++...|+
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            589999999999999999999999999999999999999999999999999999999999999988765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.7e-16  Score=78.32  Aligned_cols=69  Identities=23%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|.++.+|+++|.+|..+|++.+|+..|.++++++|+++.++..++.++...++
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            578899999999999999999999999999999999999999999999999999888888888877664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.66  E-value=1.5e-15  Score=76.91  Aligned_cols=70  Identities=19%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+..|+++++.+|+++.+|..+|.++...|++.+|+.+|+++++++|+++.++..++.++...|+.
T Consensus        31 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          31 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            5789999999999999999999999999999999999999999999999999999999999999887753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-15  Score=80.11  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+.+|+++++++|+++.+|+++|.++..+|++.+|+..|+++++++|++..++..++.++...|+
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            578899999999999999999999999999999999999999999999999998888888888877664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.8e-15  Score=72.64  Aligned_cols=67  Identities=24%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRS-------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +|.+|+.+|++++++.|.+       ..++.++|.++.++|++++|+..|+++++++|+++.+..+++......
T Consensus        20 ~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            5889999999999987643       689999999999999999999999999999999999998887665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=78.65  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      +|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|++++.++|+++..+..++.++...|
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999988765555555554444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-14  Score=73.44  Aligned_cols=64  Identities=17%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+..+.++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.+-
T Consensus        52 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          52 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999998888887664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-14  Score=77.58  Aligned_cols=68  Identities=18%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..++++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...+..+.....
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999988888877765443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.58  E-value=2e-14  Score=76.10  Aligned_cols=68  Identities=16%  Similarity=0.100  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..++++++++|.+..+|+.+|.+|..+|++++|+.+|+++++++|+++.+...+..+.....
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999888887776554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.4e-14  Score=80.87  Aligned_cols=69  Identities=22%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999999999999999999999999999988877665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=3.9e-14  Score=75.78  Aligned_cols=67  Identities=15%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..|.++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.+...+..+....
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999998888877776554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=82.35  Aligned_cols=68  Identities=19%  Similarity=0.237  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++.+++.++...|
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999999999999999999999999999999998765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=4.3e-14  Score=74.40  Aligned_cols=69  Identities=12%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQ----------DNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      |++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.++.+++.++...|+.
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            78999999999999999999999999999855          4457899999999999999999999999999887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=1.1e-13  Score=74.05  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEG   68 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   68 (79)
                      ++++|+..++++++++|+++.+++.+|.++..+|++++|+.+|++++.++|+++.+...+..+.....
T Consensus        79 ~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999988877776665443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.2e-14  Score=72.70  Aligned_cols=66  Identities=17%  Similarity=0.098  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRS--LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +.+|+..+++++..+|.+  +.+++++|.+|..+|++++|+.+|+++++++|++..+......+....
T Consensus        52 ~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          52 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            457888888888888754  458899999999999999999999999999999988877666555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-13  Score=71.75  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++++|+..|.++++++|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.+...+..+..
T Consensus        59 ~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          59 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999988777665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.8e-13  Score=76.13  Aligned_cols=69  Identities=22%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.+|+++++.+|+++.+|+.+|.++..+|++++|+.+|.++++++|+++..+..++.++...++
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            578999999999999999999999999999999999999999999999999999998888888776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=3.6e-13  Score=70.80  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-----------FSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      +++|+..|+++++++|+++.+|+++|.+|..+|+           +.+|+.+|++++.++|++..++..++......
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988764           68999999999999999999988887776554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.5e-13  Score=75.49  Aligned_cols=69  Identities=9%  Similarity=-0.052  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|+++.++..++.++...|+
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            588999999999999999999999999999999999999999999999999999999999988887664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.7e-13  Score=71.97  Aligned_cols=66  Identities=6%  Similarity=0.102  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +|++|+..|.+   +.|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.++.+++.++...|+
T Consensus        20 d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          20 DWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             CHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            47788888875   4677889999999999999999999999999999999999999999988877765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-12  Score=74.20  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      ++++|+.++++++..+|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++.++..++.++...|+
T Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  255 (323)
T d1fcha_         187 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA  255 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC
Confidence            478999999999999999999999999999999999999999999999999999999889988887765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4e-12  Score=73.62  Aligned_cols=68  Identities=7%  Similarity=-0.016  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN-FSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +++|+.+++++++++|.+..+|+++|.++...|. +++|+.+++++++++|++..++..++.++...|+
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence            3455555555555555555555555555555543 5555555555555555555555555555554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-11  Score=71.88  Aligned_cols=71  Identities=6%  Similarity=-0.003  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      ++++|+.+++++++.+|++..+|+++|.++..+|++++|+..+.++++++|++..++..++.++...++..
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            37899999999999999999999999999999999999999999999999999999999999998877643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-11  Score=66.29  Aligned_cols=69  Identities=25%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +|++|+.+|+++++..|..               ..++.++|.||.++|++++|+..+++++.++|+++.++..++.++.
T Consensus        28 ~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  107 (170)
T d1p5qa1          28 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  107 (170)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH
Confidence            5889999999999998754               3678899999999999999999999999999999999999999988


Q ss_pred             Hhhh
Q 038754           66 DEGR   69 (79)
Q Consensus        66 ~~~~   69 (79)
                      ..|+
T Consensus       108 ~~g~  111 (170)
T d1p5qa1         108 AVND  111 (170)
T ss_dssp             HTTC
T ss_pred             Hhhh
Confidence            7765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=8.9e-12  Score=63.95  Aligned_cols=64  Identities=8%  Similarity=-0.034  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRS-LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ..+|+.+++.+++.+|.+ .++++.+|..|+++|+++.|..+++++|+++|+|..+......+-.
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence            568999999999999876 4899999999999999999999999999999999988755444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=6.4e-12  Score=66.99  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTL----------------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +|.+|+..|+++++.                +|....++.++|.+|.++|++++|+..|+++++++|+++.++..++.++
T Consensus        42 ~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  121 (169)
T d1ihga1          42 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  121 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHH
Confidence            477888888888753                4566788999999999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 038754           65 VDEGRH   70 (79)
Q Consensus        65 ~~~~~~   70 (79)
                      ...++.
T Consensus       122 ~~l~~~  127 (169)
T d1ihga1         122 QGLKEY  127 (169)
T ss_dssp             HHTTCH
T ss_pred             HHccCH
Confidence            887653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=64.74  Aligned_cols=70  Identities=10%  Similarity=-0.088  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDN---FSAAITYYHKALWLKPDDQ--FCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~   70 (79)
                      ++++|...|++++.++|+++.+++++|.++.+.++   +.+|+..|++++..+|.+.  .++..++.++...|+.
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence            37899999999999999999999999999987554   5569999999999998764  4677888888877653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=2.3e-11  Score=64.09  Aligned_cols=70  Identities=24%  Similarity=0.239  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS----------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      +|.+|+..|+++++.-+..                ..++.++|.||.++|++.+|+..+++++.++|++..++..++.++
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~  111 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  111 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHH
Confidence            5789999999999877643                247889999999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 038754           65 VDEGRH   70 (79)
Q Consensus        65 ~~~~~~   70 (79)
                      ...|+.
T Consensus       112 ~~lg~~  117 (153)
T d2fbna1         112 MYFGFL  117 (153)
T ss_dssp             HHHTCH
T ss_pred             HHcCCH
Confidence            887753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.8e-11  Score=67.92  Aligned_cols=64  Identities=16%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLAL   64 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   64 (79)
                      ++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|.+......+....
T Consensus        86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  149 (259)
T d1xnfa_          86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  149 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999986655544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.6e-12  Score=70.08  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++.++|++.
T Consensus        53 ~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            578999999999999999999999999999999999999999999999988654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9e-12  Score=67.86  Aligned_cols=53  Identities=17%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++|+.+|+++++++|+++.+|+++|.++.++|++++|+..|++++...|.+
T Consensus        51 ~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          51 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            57899999999999999999999999999999999999999999999887655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.25  E-value=3.7e-11  Score=68.48  Aligned_cols=67  Identities=12%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDE   67 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   67 (79)
                      ++++|+..++++++.+|+++.++.++|.+|...|++++|+..|+++++++|++..+...++.++...
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998887777766544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.23  E-value=8.6e-11  Score=62.57  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS---------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +|.+|+.+|++++...+..               ..++.++|.||.++|++.+|+.++++++.++|++..++..++.++.
T Consensus        30 ~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~  109 (168)
T d1kt1a1          30 KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  109 (168)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            4789999999999765432               3568899999999999999999999999999999999999999888


Q ss_pred             Hhhh
Q 038754           66 DEGR   69 (79)
Q Consensus        66 ~~~~   69 (79)
                      ..|+
T Consensus       110 ~l~~  113 (168)
T d1kt1a1         110 LMNE  113 (168)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.7e-11  Score=71.97  Aligned_cols=70  Identities=21%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      ++++|+.+|.++++++|+++.+|+++|.++...|++.+|+.+|.+++.++|.++.++.++..++......
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            5789999999999999999999999999999999999999999999999999999999999998876543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.10  E-value=1.5e-10  Score=58.08  Aligned_cols=47  Identities=23%  Similarity=0.120  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKAL   47 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   47 (79)
                      ++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.++++.|
T Consensus        65 ~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          65 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999976

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.98  E-value=7.1e-10  Score=58.24  Aligned_cols=69  Identities=28%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------HHHH
Q 038754            1 IYHEAISCYERALTLLNRS------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD-----------QFCT   57 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~   57 (79)
                      +|++|+..|++++++.|..            +.+|.++|.+|..+|++++|+..+++++++.|+.           ..++
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            5899999999999998864            4689999999999999999999999999875421           1345


Q ss_pred             HHHHHHHHHhhh
Q 038754           58 EMLSLALVDEGR   69 (79)
Q Consensus        58 ~~l~~~~~~~~~   69 (79)
                      ..++.++...|+
T Consensus       104 ~~~g~~~~~lg~  115 (156)
T d2hr2a1         104 YSRALALDGLGR  115 (156)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHH
Confidence            566777776664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=2.9e-10  Score=65.46  Aligned_cols=64  Identities=11%  Similarity=-0.039  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      +.+|+..+.+++..+|.++.++..+|.+|...|++++|+.+|+++++++|++...+..++..+.
T Consensus       258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999988887766554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=1.3e-08  Score=54.76  Aligned_cols=70  Identities=16%  Similarity=-0.002  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q 038754            1 IYHEAISCYERALTLLNRS----------------------LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTE   58 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   58 (79)
                      ++++|...|++++.+.+.+                      ..++.+++.++...|++++|+.++++++.++|.+..++.
T Consensus        26 ~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~  105 (179)
T d2ff4a2          26 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT  105 (179)
T ss_dssp             CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHH
Confidence            4677888888888876543                      257788888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhhc
Q 038754           59 MLSLALVDEGRH   70 (79)
Q Consensus        59 ~l~~~~~~~~~~   70 (79)
                      .+..++...|+.
T Consensus       106 ~l~~al~~~Gr~  117 (179)
T d2ff4a2         106 QLITAYYLSDRQ  117 (179)
T ss_dssp             HHHHHHHTTTCH
T ss_pred             HHHHHHHHhcCH
Confidence            877777766553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.4e-08  Score=58.25  Aligned_cols=70  Identities=7%  Similarity=-0.040  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcC
Q 038754            2 YHEAISCYERALTLLNRSLSTY-AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHG   71 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   71 (79)
                      +++|+..+.++++.+|++..++ ...|.++...+.++.|+.++++++.++|++..++..++.++...++..
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence            5778888888888888888775 466778888888888888888888888888888888888888877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.9e-08  Score=51.14  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhh
Q 038754           20 LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGR   69 (79)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   69 (79)
                      +..+.++|..++..|+|++|+.+|+++++++|+++.++.+++.++...++
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~   53 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD   53 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc
Confidence            35667899999999999999999999999999999999999999888765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=4.5e-08  Score=52.59  Aligned_cols=53  Identities=21%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HccCCCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKA-------LWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------l~~~p~~   53 (79)
                      ++++|+.+++++++.+|.+..+|..++.++...|++.+|+..|+++       +-++|..
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            5789999999999999999999999999999999999999999998       5678864

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.70  E-value=1.1e-08  Score=53.59  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNR-----------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++|+..+++++++.|.           ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus        70 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          70 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            467888888888876532           24578999999999999999999999999996644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.6e-07  Score=52.65  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLNRS-----LSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      ++++|+..++++++..|++     ..++..+|.+|..+|++++|+..|++++.+.|..
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            5789999999999999986     3588999999999999999999999999886543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.6e-08  Score=60.44  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      .+|...+.+++..++  ..++.++|.++...|++++|+.+|++|++++|++..++..++.++...|+.
T Consensus       137 ~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~  202 (497)
T d1ya0a1         137 SAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH  202 (497)
T ss_dssp             ------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCH
Confidence            344455555555544  367889999999999999999999999999999999999999998776653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.1e-07  Score=45.02  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD-------QFCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~   69 (79)
                      +++-++.+|.+++..|++.+|+.+|++|+++.|.+       ..++.+++.++...|+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~   61 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD   61 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC
Confidence            46678999999999999999999999999987654       3566677777766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=5e-07  Score=51.06  Aligned_cols=53  Identities=13%  Similarity=0.069  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 038754            1 IYHEAISCYERALTLLN------RSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDD   53 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   53 (79)
                      +|++|+.+|.+++++..      +-..++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus        52 ~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence            47899999999999742      235789999999999999999999999999986544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.5e-06  Score=48.99  Aligned_cols=54  Identities=24%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 038754            1 IYHEAISCYERALTLLNR------SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ   54 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   54 (79)
                      ++++|+.+|++++++.+.      ...++.++|.++..+|++++|+..|++++.+.|.++
T Consensus       133 ~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            478999999999887542      246789999999999999999999999999988775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=2.7e-05  Score=44.02  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHh
Q 038754            2 YHEAISCYERALTL-LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQ-FCTEMLSLALVDE   67 (79)
Q Consensus         2 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~   67 (79)
                      +++|...|+++++. .|++...|..++..+..+|+++.|...|++++...|.+. .++..+.......
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~  147 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc
Confidence            35778888998874 788888999999999999999999999999999988764 3555555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.4e-05  Score=45.24  Aligned_cols=49  Identities=8%  Similarity=-0.025  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            3 HEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         3 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      +.|..+|+++++..|+++..|..++......|+++.|...|++++...|
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            3344455555555555555555555555555555555555555555444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=6.3e-06  Score=45.93  Aligned_cols=51  Identities=18%  Similarity=-0.009  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTL------LNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   51 (79)
                      ++++|...+++++..      .|....++..+|.+|..+|++++|+..+++++.+.+
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         266 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            467889999888743      355678999999999999999999999999999854

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00049  Score=34.41  Aligned_cols=62  Identities=23%  Similarity=0.169  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ++++|+.+++++.+.  .++.+.+.+|.+|..    ..++..|+.+|+++.+.  .++.+...++..+..
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            356788888887765  578889999988876    56788999999998875  466777777777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.68  E-value=0.00014  Score=39.85  Aligned_cols=61  Identities=23%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKPDDQFCTEMLSLALV   65 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   65 (79)
                      ++.+|+.+|+++.+.  +++.+++.+|.+|..    ..++..|+.+++.+...+  ++.+...++....
T Consensus        17 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~   81 (265)
T d1ouva_          17 DFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYY   81 (265)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccc
Confidence            467788888887665  477788888888776    667778888877766544  5555666665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=0.00094  Score=36.42  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 038754           19 SLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVD   66 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   66 (79)
                      ||.+++++|..++..+++.+|+.+|+++.+.  ++..++..++.++..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~   46 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQ   46 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            5889999999999999999999999999765  578888888888765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00035  Score=34.97  Aligned_cols=49  Identities=22%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 038754            1 IYHEAISCYERALTLLNRSLSTYAGLAYTYHL----QDNFSAAITYYHKALWLKP   51 (79)
Q Consensus         1 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p   51 (79)
                      ++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.++..
T Consensus        74 d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          74 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            468999999999876  479999999999987    5689999999999998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.24  E-value=0.00036  Score=39.12  Aligned_cols=42  Identities=14%  Similarity=0.127  Sum_probs=37.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhc
Q 038754           29 TYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRH   70 (79)
Q Consensus        29 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~   70 (79)
                      -....|++++|+..|+++++.+|++..++..++.++...|+-
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~   46 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF   46 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence            356789999999999999999999999999999998877653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.047  Score=27.18  Aligned_cols=51  Identities=8%  Similarity=0.105  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhhh
Q 038754           19 SLSTYAGLAYTYHLQDNF---SAAITYYHKALWLKPDDQ-FCTEMLSLALVDEGR   69 (79)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~   69 (79)
                      ++.+.|++|+++.+..+.   +.++.+++.+++.+|.+. .++-.++-+.-..|+
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd   88 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE   88 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh
Confidence            578999999999987655   579999999999999775 566666666655543

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.24  E-value=0.07  Score=32.32  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhhhcCC
Q 038754           10 ERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLKPDDQFCTEMLSLALVDEGRHGI   72 (79)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   72 (79)
                      ++.+++-. ........+...+..|+++.|......++..+|+|..++..+++++...|....
T Consensus       421 ~~~v~~~G-G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         421 GRYVEYMG-GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            34444443 367778888889999999999999999999999999999999999999887654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.044  Score=25.33  Aligned_cols=28  Identities=18%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 038754           21 STYAGLAYTYHLQDNFSAAITYYHKALW   48 (79)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~A~~~~~~al~   48 (79)
                      ..+...|..+...|+|++||.|.++|..
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566778889999999999998887654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.019  Score=27.12  Aligned_cols=25  Identities=12%  Similarity=0.275  Sum_probs=15.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHcc
Q 038754           25 GLAYTYHLQDNFSAAITYYHKALWL   49 (79)
Q Consensus        25 ~~~~~~~~~~~~~~A~~~~~~al~~   49 (79)
                      ..|.-+-..|+|.+|+.+|..++.+
T Consensus        20 ~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          20 KRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344444677777777777777653

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.023  Score=25.88  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHccCCCCH
Q 038754            2 YHEAISCYERALTLLNRSLSTYAGLAYTYHLQDNFSA-------AITYYHKALWLKPDDQ   54 (79)
Q Consensus         2 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------A~~~~~~al~~~p~~~   54 (79)
                      +++|+.+..++++.+               ..|++.+       |+..|..+++..|+++
T Consensus         8 l~~A~~l~~~Av~~D---------------~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~   52 (77)
T d1wr0a1           8 LQKAIDLASKAAQED---------------KAGNYEEALQLYQHAVQYFLHVVKYEAQGD   52 (77)
T ss_dssp             HHHHHHHHHHHHHHH---------------HTTCCSSHHHHHHHHHHHHHHHHHHSCCTG
T ss_pred             HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHHHHhccCCCH
Confidence            345666666666655               4455444       4445555555566654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.20  E-value=0.23  Score=25.18  Aligned_cols=45  Identities=16%  Similarity=-0.076  Sum_probs=36.0

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 038754            6 ISCYERALTLLNRSLSTYAGLAYTYHLQDNFSAAITYYHKALWLK   50 (79)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   50 (79)
                      ...++..++.+.-+|..+..+|.+|.+.|..+++-..+.+|.+..
T Consensus       106 d~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1         106 EEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            345566677777789999999999999999999999999988754

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.61  E-value=0.23  Score=23.49  Aligned_cols=33  Identities=12%  Similarity=0.067  Sum_probs=26.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q 038754           24 AGLAYTYHLQDNFSAAITYYHKALWLKPDDQFC   56 (79)
Q Consensus        24 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   56 (79)
                      ..+|..+...|+++++...|-+|+..-|+....
T Consensus        24 V~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~L   56 (95)
T d1om2a_          24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL   56 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            357888888999999999999999988776533