Citrus Sinensis ID: 038771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTEDLTPASPPVESDAPTSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHccccccccccccccHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MEGLKTFHLFALLLATLSVIsvngqlttpcttsmissftpclnfitgstsngvttptqnccDSLKSLMSTSMDCACLVItanvplqlpinrtlslslpracnmggvpvqckasgtplpapgclpsfgtnmltktslagpaalfgpapapiadsplspraskavapaaetdttedltpasppvesdaptspgispaltpppspsasrrscipppsllLFFVGIrrfrdapnhrpifcvclygp
Flexible Loop (DISEMBL)
MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAaetdttedltpaspPVESDAPTSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Low Complexity Region (SEG)
MEGlktfhlfalllatlSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSlagpaalfgpapapiaDSPLSPRASKAVAPAAETDTTEDLTPASPPVESDAPTspgispaltpppspsasrrscipppsLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Disordered region (IsUnstruct)
****KTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKT******************************************************************************PSLLLFFVGIRRFRDAPNHRPIFCVCLY**
Disordered Region (DISOPRED)
******F*LFALLLATLSV**************MISSFTPCLNFITGS*******P***CCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGG************************************************************************************************************SLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Disordered Region (DISEMBL)
MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSP*****************************************************SCIPPPSLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Disordered Region (DISPRO)
**GLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITG******TTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKAS***********************************************************************************************CIPPPSLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTEDLTPASPPVESDAPTSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFRDAPNHRPIFCVCLYGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
255567552	219	lipid binding protein, putative [Ricinus	0.834	0.922	0.565	6e-51
359479645	214	PREDICTED: uncharacterized protein LOC10	0.855	0.967	0.558	3e-47
224082656	139	predicted protein [Populus trichocarpa]	0.512	0.892	0.753	5e-45
388518165	224	unknown [Lotus japonicus]	0.789	0.852	0.504	6e-39
296085222	178	unnamed protein product [Vitis vinifera]	0.719	0.977	0.553	3e-36
224066471	108	predicted protein [Populus trichocarpa]	0.433	0.972	0.770	6e-36
357440667	190	Non-specific lipid-transfer protein [Med	0.677	0.863	0.552	1e-35
225432724	217	PREDICTED: uncharacterized protein LOC10	0.834	0.930	0.447	7e-35
297737081	195	unnamed protein product [Vitis vinifera]	0.760	0.943	0.480	2e-34
356534201	227	PREDICTED: non-specific lipid-transfer p	0.871	0.929	0.445	1e-33

>gi|255567552|ref|XP_002524755.1| lipid binding protein, putative [Ricinus communis] gi|223535939|gb|EEF37598.1| lipid binding protein, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 161/230 (70%), Gaps = 28/230 (12%)

Query: 1   MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSF-TPCLNFITGSTSNGVTTPTQN 59
           ME LK   + A++ +T+  ISVNGQ++TPCTTSMI+SF TPC+NFITGS++NG  +PT +
Sbjct: 1   MENLKILQVIAMI-STIIAISVNGQISTPCTTSMITSFFTPCINFITGSSNNG-NSPTTS 58

Query: 60  CCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPA 119
           CC+SLKSLMSTSMDCACL++TANVP+QLPINRTL++SLPRAC M GVP+QCKASG+PLPA
Sbjct: 59  CCNSLKSLMSTSMDCACLIVTANVPVQLPINRTLAISLPRACKMNGVPLQCKASGSPLPA 118

Query: 120 PGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAV--APAAETDTTEDLTP 177
           PG                    L GP   P + +PLSPRASKAV  APA E++T   LTP
Sbjct: 119 PG------------------PVLLGPTLPPPSAAPLSPRASKAVALAPAPESETILPLTP 160

Query: 178 ASPPVESDAPTS-PGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFR 226
           A PPV+ +APT+  GI P L    +PSAS  S I PP  L+    I   +
Sbjct: 161 AFPPVQVEAPTANTGIRPVL----NPSASISSNISPPISLIVLTAIIVLK 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479645|ref|XP_003632315.1| PREDICTED: uncharacterized protein LOC100852532 [Vitis vinifera]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/231 (55%), Positives = 154/231 (66%), Gaps = 24/231 (10%)

Query: 1   MEGLKTF-HLFALL--LATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPT 57
           MEGLK F H+ A+   L  +SVIS N Q++TPCTTSMISSFTPCLNFITGSTS   ++PT
Sbjct: 1   MEGLKAFQHMVAVYTTLLAISVISANAQISTPCTTSMISSFTPCLNFITGSTSGNGSSPT 60

Query: 58  QNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPL 117
             CC SL+SL ST+MDCACL+IT +VPLQLPINRTL++SLPRACNMG VP+QCKASGTPL
Sbjct: 61  AGCCSSLRSLTSTTMDCACLIITGSVPLQLPINRTLAISLPRACNMGSVPIQCKASGTPL 120

Query: 118 PAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTEDLTP 177
           PAPG +            L GP      A      +  +  A+ A AP  ET    +L+P
Sbjct: 121 PAPGPV------------LLGPTLPPPAAAPLSPRASKAAAATLAPAPEPETAI--ELSP 166

Query: 178 ASPPVESDAP--TSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFR 226
           ASPPV+S+ P  T+PGI P LT    PSAS  S I  P LLL  +GI   +
Sbjct: 167 ASPPVDSETPTTTTPGIRPVLT----PSASNPSYISSP-LLLIVLGIMFLK 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082656|ref|XP_002306782.1| predicted protein [Populus trichocarpa] gi|222856231|gb|EEE93778.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 111/126 (88%), Gaps = 2/126 (1%)

Query: 1   MEGLKTFHLFALLLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNC 60
           MEGL+ F+L A+L +TL VISVNGQ++TPCTTSMISSFTPC+NFITGST+NG ++PT +C
Sbjct: 1   MEGLRVFNLIAIL-STLLVISVNGQISTPCTTSMISSFTPCINFITGSTNNG-SSPTGSC 58

Query: 61  CDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAP 120
           C S KSLMST MDCACL+ITANVPLQLPINRTL+++LPRAC M GVP+ CKASGTPLPAP
Sbjct: 59  CSSFKSLMSTGMDCACLLITANVPLQLPINRTLAITLPRACKMSGVPMLCKASGTPLPAP 118

Query: 121 GCLPSF 126
           G   SF
Sbjct: 119 GNWKSF 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518165|gb|AFK47144.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 146/224 (65%), Gaps = 33/224 (14%)

Query: 1   MEGLKTFHLFALL--LATL---SVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTT 55
           ME L  F +  +L  LA L   SV  V+GQ++TPCTT+++S+FTPC N ITGST+NG   
Sbjct: 1   MEKLSAFQMRVILIILAALIVSSVKLVHGQISTPCTTALMSTFTPCANIITGSTNNGFAP 60

Query: 56  PTQNCCDSLKSLMSTSMDCACLVITANVPL-QLPINRTLSLSLPRACNMGGVPVQCKASG 114
           P+  CCDSL+SLM+T+MDCACLVI+AN PL QLPIN+ L+LSL RACN+ G+ +QCKASG
Sbjct: 61  PS-TCCDSLRSLMNTNMDCACLVISANAPLFQLPINQVLALSLSRACNINGIALQCKASG 119

Query: 115 TPLPAPGCLPS-FGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTE 173
           +PLPAPG  P+ FG+N  T              P+  A    SP+ S+ +A   +    E
Sbjct: 120 SPLPAPG--PAIFGSNNPT-------------LPSSSAAPTFSPQGSETIA-EGKAHKYE 163

Query: 174 DLT-------PASPPVESDAPT-SPGISPALTPPPSPSASRRSC 209
           +L        PAS PVE+++PT +PGI P LT  P PSAS  SC
Sbjct: 164 NLQVAQTLVAPASSPVEAESPTRTPGIRPVLT-TPHPSASTPSC 206

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085222|emb|CBI28717.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 128/195 (65%), Gaps = 21/195 (10%)

Query: 34  MISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTL 93
           MISSFTPCLNFITGSTS   ++PT  CC SL+SL ST+MDCACL+IT +VPLQLPINRTL
Sbjct: 1   MISSFTPCLNFITGSTSGNGSSPTAGCCSSLRSLTSTTMDCACLIITGSVPLQLPINRTL 60

Query: 94  SLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADS 153
           ++SLPRACNMG VP+QCKASGTPLPAPG +            L GP      A      +
Sbjct: 61  AISLPRACNMGSVPIQCKASGTPLPAPGPV------------LLGPTLPPPAAAPLSPRA 108

Query: 154 PLSPRASKAVAPAAETDTTEDLTPASPPVESDAP--TSPGISPALTPPPSPSASRRSCIP 211
             +  A+ A AP  ET    +L+PASPPV+S+ P  T+PGI P LT    PSAS  S I 
Sbjct: 109 SKAAAATLAPAPEPETAI--ELSPASPPVDSETPTTTTPGIRPVLT----PSASNPSYIS 162

Query: 212 PPSLLLFFVGIRRFR 226
            P LLL  +GI   +
Sbjct: 163 SP-LLLIVLGIMFLK 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066471|ref|XP_002302106.1| predicted protein [Populus trichocarpa] gi|222843832|gb|EEE81379.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 96/109 (88%), Gaps = 4/109 (3%)

Query: 13  LLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSM 72
           LL+TL VISVNGQ+ TPCT SMISSFTPC+NFITGSTSNG + PT +CC SLKSLMST M
Sbjct: 3   LLSTLLVISVNGQINTPCTMSMISSFTPCVNFITGSTSNG-SPPTASCCSSLKSLMSTGM 61

Query: 73  DCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPG 121
           DCACL++TANVP+QLPINRTL++SLP AC   G+P QCK+SGTPLPAPG
Sbjct: 62  DCACLLLTANVPVQLPINRTLAISLPGAC---GMPGQCKSSGTPLPAPG 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440667|ref|XP_003590611.1| Non-specific lipid-transfer protein [Medicago truncatula] gi|355479659|gb|AES60862.1| Non-specific lipid-transfer protein [Medicago truncatula] gi|388492756|gb|AFK34444.1| unknown [Medicago truncatula]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/172 (55%), Positives = 119/172 (69%), Gaps = 8/172 (4%)

Query: 1   MEGLKTFHLFAL--LLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTS-NGVTTPT 57
           M  L  F +  +   L   SV  V GQ++TPCTTSMISSFTPC NFITGST+ NG+ TP+
Sbjct: 1   MGHLSIFQMKVISTFLLITSVKLVFGQISTPCTTSMISSFTPCANFITGSTNYNGLITPS 60

Query: 58  QNCCDSLKSLMSTSMDCACLVITANVPLQL-PINRTLSLSLPRACNMGGVPVQCKASGTP 116
            +CCDSL+S+MSTSMDCACL+ITANVP QL PINR LS  LP++CN+ G+  QCKASG+P
Sbjct: 61  SSCCDSLQSMMSTSMDCACLLITANVPFQLPPINRVLSFFLPQSCNLNGLHAQCKASGSP 120

Query: 117 LPAPGCLPS-FGTNMLTKTSL-AGPAALFGPAPAPIADSPLSPRASKAVAPA 166
           LPAPG  P+ FG+N+ +   + A P +        +ADSP       A+APA
Sbjct: 121 LPAPG--PAIFGSNVPSLPPINASPLSSQVDETIEVADSPKYVIQHSAIAPA 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432724|ref|XP_002278974.1| PREDICTED: uncharacterized protein LOC100257872 [Vitis vinifera]

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/228 (44%), Positives = 137/228 (60%), Gaps = 26/228 (11%)

Query: 4   LKTFHLFALLLATLSV------ISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPT 57
           ++ F     L++TL++      + V GQ++T C+ SMISSFTPC+NF+T S+ NG T+PT
Sbjct: 1   MEVFKSSLCLVSTLAIALMVVIMPVQGQISTSCSASMISSFTPCINFVTNSSGNG-TSPT 59

Query: 58  QNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPL 117
            +CC++L+SL STSMDC CL++T +VP Q+PINRTL++SLPRACN   VPVQCKA+G   
Sbjct: 60  ADCCNALRSLTSTSMDCLCLIVTGSVPFQMPINRTLAISLPRACNTASVPVQCKATGA-- 117

Query: 118 PAPGCLPSFGTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAE--TDTTEDL 175
                            +  GP       P+P   SP +     + +PA    +DTT  L
Sbjct: 118 ----------PVPAPGPAALGPTLSPQATPSPTGPSPKASSVPGSTSPALAPGSDTTPSL 167

Query: 176 TPASPPVESDAP-TSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGI 222
           TP SP V+SDAP T+ G  P LT    PSA  R     PSL+LF +GI
Sbjct: 168 TPDSPTVDSDAPTTTTGSRPVLT----PSAGNRPQSLSPSLVLFVLGI 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737081|emb|CBI26282.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 126/204 (61%), Gaps = 20/204 (9%)

Query: 22  VNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITA 81
           V GQ++T C+ SMISSFTPC+NF+T S+ NG T+PT +CC++L+SL STSMDC CL++T 
Sbjct: 3   VQGQISTSCSASMISSFTPCINFVTNSSGNG-TSPTADCCNALRSLTSTSMDCLCLIVTG 61

Query: 82  NVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNMLTKTSLAGPAA 141
           +VP Q+PINRTL++SLPRACN   VPVQCKA+G                    +  GP  
Sbjct: 62  SVPFQMPINRTLAISLPRACNTASVPVQCKATGA------------PVPAPGPAALGPTL 109

Query: 142 LFGPAPAPIADSPLSPRASKAVAPAAE--TDTTEDLTPASPPVESDAP-TSPGISPALTP 198
                P+P   SP +     + +PA    +DTT  LTP SP V+SDAP T+ G  P LT 
Sbjct: 110 SPQATPSPTGPSPKASSVPGSTSPALAPGSDTTPSLTPDSPTVDSDAPTTTTGSRPVLT- 168

Query: 199 PPSPSASRRSCIPPPSLLLFFVGI 222
              PSA  R     PSL+LF +GI
Sbjct: 169 ---PSAGNRPQSLSPSLVLFVLGI 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534201|ref|XP_003535646.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 9/220 (4%)

Query: 11  ALLLATLSVIS---VNGQLTTPCTTSMISSF-TPCLNFITGSTSNGVTTPTQNCCDSLKS 66
           AL++A ++++      GQ++TPC  S++ +F TPC+NF+T S+ NG T+PT  CC +LKS
Sbjct: 11  ALVIAVVAMVMGAPSYGQISTPCNASILGTFFTPCMNFLTNSSGNG-TSPTTECCSALKS 69

Query: 67  LMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSF 126
           L S  MDC CL++T +VP ++P+NRTL++SLPRACNM GVPVQCKASG+PLPAPG + S 
Sbjct: 70  LTSGGMDCLCLIVTGSVPFRIPVNRTLAISLPRACNMAGVPVQCKASGSPLPAPGPV-SL 128

Query: 127 GTNMLTKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTEDLTPASPPVESDA 186
           G +    ++ + P+  F P P+P A + L    S ++AP ++T T   LTP SP  +S  
Sbjct: 129 GPSPSPASAPSAPSG-FTPTPSPQASTVLPSPTSPSLAPQSDTTTPSLLTPPSPSADSGN 187

Query: 187 PTSPGISPALTPPPSPSASRRSCIPPPSLLLFFVGIRRFR 226
           P+ P  S       SPS++  S    PSLL   +G    +
Sbjct: 188 PSVPTGSGRTN--LSPSSAMTSYSVSPSLLFIALGFALLK 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2039341	200	EDA4 "AT2G48140" [Arabidopsis	0.409	0.495	0.712	3.5e-36
TAIR|locus:2828523	203	AT3G22620 [Arabidopsis thalian	0.433	0.517	0.509	9.9e-31
TAIR|locus:2201046	205	AT1G05450 "AT1G05450" [Arabido	0.433	0.512	0.572	6.2e-30
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.438	0.579	0.379	3e-14
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.330	0.470	0.413	1.6e-13
TAIR|locus:2043750	169	XYP2 "xylogen protein 2" [Arab	0.384	0.550	0.336	1.4e-12
TAIR|locus:2184817	158	AT5G09370 [Arabidopsis thalian	0.388	0.594	0.378	7.4e-11
TAIR|locus:2031551	193	AT1G73890 [Arabidopsis thalian	0.384	0.481	0.346	1.4e-09
TAIR|locus:505006466	156	AT4G14815 [Arabidopsis thalian	0.334	0.519	0.367	1.4e-09
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.334	0.473	0.340	3.6e-09

TAIR|locus:2039341 EDA4 "AT2G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 72/101 (71%), Positives = 86/101 (85%)

Query:    25 QLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVP 84
             Q++TPCT+SMIS+FTPCLNFITGS S G  TPT  CCDSLK+L +T M CACL++TANVP
Sbjct:    22 QISTPCTSSMISTFTPCLNFITGS-SGGSVTPTAGCCDSLKTLTNTGMGCACLILTANVP 80

Query:    85 LQLP-INRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLP 124
             L    INRTL+L+LPRAC MGGVP+QC+A+GTPLPAPG +P
Sbjct:    81 LPTGFINRTLALALPRACKMGGVPIQCQAAGTPLPAPGQVP 121

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009561 "megagametogenesis" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2828523 AT3G22620 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 54/106 (50%), Positives = 77/106 (72%)

Query:    25 QLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVP 84
             Q  + CT SM+++ +PC+ FIT S+SNG T+P+ +CC+SL+SL +  M C CL++T  VP
Sbjct:    24 QPLSQCTPSMMTTVSPCMGFITNSSSNG-TSPSSDCCNSLRSLTTGGMGCLCLIVTGTVP 82

Query:    85 LQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFGTNM 130
               +PINRT ++SLPRACNM  VP+QC+A+  P  APG   +FG +M
Sbjct:    83 FNIPINRTTAVSLPRACNMPRVPLQCQANIAPAAAPGPAATFGPSM 128

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2201046 AT1G05450 "AT1G05450" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/110 (57%), Positives = 79/110 (71%)

Query:    18 SVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACL 77
             S  S+  Q+ TPC+ SM+SS T C +F+TG    G + PT +CC +LKSL  T MDC CL
Sbjct:    21 SPTSILAQINTPCSPSMLSSVTGCTSFLTG----GGSFPTSDCCGALKSLTGTGMDCLCL 76

Query:    78 VITANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAPGCLPSFG 127
             ++TA VP+ +PINRTL++SLPRAC + GVPVQCKAS  PLP PG   SFG
Sbjct:    77 IVTAGVPISIPINRTLAISLPRACGIPGVPVQCKASAAPLPTPGPA-SFG 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 44/116 (37%), Positives = 66/116 (56%)

Query:    25 QLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVP 84
             Q ++ C  S +++ +PCL++ITG++    TTP+Q CC  L S++ +S  C C  + + +P
Sbjct:    25 QPSSSCV-STLTTLSPCLSYITGNS----TTPSQPCCSRLDSVIKSSPQCICSAVNSPIP 79

Query:    85 -LQLPINRTLSLSLPRACNMGGVPV-QCKASGTPL---PAPGCLPSFGTNMLTKTS 135
              + L INRT +L LP ACN+   P+ QC A+  P    PAP          LT TS
Sbjct:    80 NIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQPPAPSPTEKTPDVTLTPTS 135

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query:    30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITAN-VPLQLP 88
             CT ++IS  +PCLN+ITG++    T+P Q CC+ L  ++ +S DC C V+      L + 
Sbjct:    28 CTNALIS-MSPCLNYITGNS----TSPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGIN 82

Query:    89 INRTLSLSLPRACNMGGVPV-QCKASG 114
             +N+T +L LPRACN+   PV +C   G
Sbjct:    83 VNQTQALGLPRACNVQTPPVSRCNTGG 109

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2043750 XYP2 "xylogen protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 34/101 (33%), Positives = 51/101 (50%)

Query:    32 TSMISSFTPCLNFIT-GSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPIN 90
             +S+I +   CL+F+T GST   V  P   CC  LK+++ T  +C C     +  L L ++
Sbjct:    28 SSLILNMADCLSFVTSGST---VVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLD 84

Query:    91 RTLSLSLPRACNMGGVP-VQC--KASGTP-LPAPGCLPSFG 127
              + + SLP  C +   P  +C    SG P   APG  P+ G
Sbjct:    85 LSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPGLSPTAG 125

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2184817 AT5G09370 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 39/103 (37%), Positives = 57/103 (55%)

Query:    30 CTTSMISSFTPCLNFIT-GSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLP 88
             C T +I+ F PCL FI+ G T++   TPT +CC SLK+++ T   C C  +    PL + 
Sbjct:    28 CDTLVITLF-PCLPFISIGGTAD---TPTASCCSSLKNILDTKPICLCEGLK-KAPLGIK 82

Query:    89 INRTLSLSLPRACNMGGVPVQ-CKA--SGTPLPAPGCLPSFGT 128
             +N T S +LP AC +   PV  C +    +P  A G  P +G+
Sbjct:    83 LNVTKSATLPVACKLNAPPVSACDSLPPASPPTANGQAPVWGS 125

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2031551 AT1G73890 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 35/101 (34%), Positives = 48/101 (47%)

Query:    22 VNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVI-- 79
             V  Q+   C + ++S   PC  F+ G        P Q CCDSL  + S    C CL +  
Sbjct:    22 VLAQVPATCASRLLS-LAPCGPFVQGFAQ----LPAQPCCDSLNQIYSQEATCLCLFLNN 76

Query:    80 TANVPLQLPINRTLSLSLPRACNMGGVPVQCKASGTPLPAP 120
             T+ +    PIN+TL+L LP  CN+      C +S  P  AP
Sbjct:    77 TSTLSPAFPINQTLALQLPPLCNIPANSSTCSSS-FPGEAP 116

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:505006466 AT4G14815 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query:    30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITAN-VPLQLP 88
             CT  +IS   PCL+FIT +TS     P+Q CC+ L  ++  S +C C V+      L + 
Sbjct:    26 CTNVLIS-MAPCLSFITQNTS----LPSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGIN 80

Query:    89 INRTLSLSLPRACNMGGVPVQCKASGT 115
             +N T +L+LP+AC++   P     SG+
Sbjct:    81 VNETQALALPKACHVETPPASRCHSGS 107

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/91 (34%), Positives = 50/91 (54%)

Query:    35 ISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVP--LQLPINRT 92
             ++S +PCL ++ G +S+    P+ +CC    +++ +S +C C V+ +N         NRT
Sbjct:    29 LTSLSPCLYYLNGGSSS----PSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFKFNRT 84

Query:    93 LSLSLPRACNMGGV-PVQCKASG---TPLPA 119
             L+L+LP ACN+    P  C   G   T LPA
Sbjct:    85 LALNLPTACNVQTPSPSLCNTGGNVPTTLPA 115

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.914.1 hypothetical protein (119 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	1e-14
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	5e-11
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	2e-05
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	1e-04
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 13  LLATLSVISVNGQLTTPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSM 72
           +LA L   +           S   S  PCL +   + +     P+  CC +LK+ +   +
Sbjct: 1   VLAVLLASAAAAPPAPASAASCADSLLPCLGYCYVNGT---AAPSPACCAALKAAVKADV 57

Query: 73  DCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQC 110
            C C ++T+ +     IN T +++LP+AC +   P +C
Sbjct: 58  PCLCDLVTSPLAAGFGINLTRAVALPKACGLTSPPSKC 95

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 56.3 bits (136), Expect = 5e-11
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 38  FTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLP-INRTLSLS 96
             PCL+++TG      T P  +CC  LKS++ +   C C  +       L   N T +L+
Sbjct: 1   LAPCLSYLTGGA----TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALA 56

Query: 97  LPRACNM 103
           LP AC +
Sbjct: 57  LPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 35  ISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANV---PLQLPINR 91
           +    PCL+++ G +      P+Q CC  L+ L   S  C CL + A V        +N 
Sbjct: 5   LLQLAPCLSYLVGGSRGA--PPSQQCCSQLRGL--NSAQCRCLALRAAVLGILEIPGLNA 60

Query: 92  TLSLSLPRACNMGGVPVQC 110
             + SLP AC +      C
Sbjct: 61  QNAASLPSACGVPPPYTDC 79

Length = 79

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 34  MISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTL 93
           ++    PC  ++ G    G   P+Q CC  L+ L      C C  I A V     IN   
Sbjct: 4   VLLKLAPCAGYLQG----GCQVPSQQCCSQLRQL---QAQCRCTAIRAIVLGIEGINPQA 56

Query: 94  SLSLPRACNM 103
           + SLP  C +
Sbjct: 57  AASLPSMCGV 66

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 35  ISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSL--MSTSMD-----CACLV-ITANVPLQ 86
            S   PCL ++TG    G   P+  CC  +KSL  ++ +       C CL    A +   
Sbjct: 7   TSLLAPCLGYLTG----GGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS-- 60

Query: 87  LPINRTLSLSLPRACN 102
             +N   +  LP  C 
Sbjct: 61  -GLNPGRAAGLPGKCG 75

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 132 TKTSLAGPAALFGPAPAPIADSPLSPRASKAVAPAAETDTTEDLTPASPPVESDAPTSPG 191
            KT     AA   PA AP+A +     A  A   AA +        A P     AP +  
Sbjct: 378 KKTPARPEAAA--PAAAPVAQAAA-APAPAAAPAAAAS-----APAAPPAAAPPAPVAAP 429

Query: 192 ISPALTPPPSPSASRRSCIPPPS 214
            + A    P+ + +  +  P P 
Sbjct: 430 AAAAPAAAPAAAPAAVALAPAPP 452

Length = 618

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.47
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.37
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.31
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.31
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.25
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.82
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.19
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	93.82
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	91.4
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	81.23

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.47  E-value=4.8e-15  Score=112.30  Aligned_cols=75  Identities=33%  Similarity=0.758  Sum_probs=49.3

Q ss_pred             CCCChhhhhcccccc---hhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcC
Q 038771           27 TTPCTTSMISSFTPC---LNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNM  103 (242)
Q Consensus        27 a~~C~~sV~s~LtPC---lpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv  103 (242)
                      ..+|..    +|.+|   +.|++++     ..|++.||+++|++++.+.+|||.++++....+++||.+++++||++||+
T Consensus        19 ~~~c~~----~l~~c~~~~~~~~~~-----~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~   89 (96)
T PF14368_consen   19 CCSCAN----SLLPCCPCLCYVTGG-----PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGV   89 (96)
T ss_dssp             TTB-HC----CCCHH--HHHHHCC----------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTS
T ss_pred             cchhHH----HHhccccchhccCCC-----CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCC
Confidence            356654    67777   7888753     78999999999999888899999999876523457999999999999999


Q ss_pred             CCCcCCC
Q 038771          104 GGVPVQC  110 (242)
Q Consensus       104 ~~pP~~C  110 (242)
                      +.++.+|
T Consensus        90 ~~~~~~C   96 (96)
T PF14368_consen   90 PVPPSKC   96 (96)
T ss_dssp             S-S----
T ss_pred             CCCCCCC
Confidence            9887665

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.37  E-value=4.3e-13  Score=99.65  Aligned_cols=73  Identities=27%  Similarity=0.671  Sum_probs=58.2

Q ss_pred             ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCCcCC
Q 038771           30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQ  109 (242)
Q Consensus        30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~pP~~  109 (242)
                      |..++ ..|++|++|+++++  ....|+..||++||++   +..|+|.+++... +. .||.++|.+||++||+++++.+
T Consensus         1 C~~~~-~~L~~C~~yl~~~~--~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-~~-~i~~~~a~~Lp~~Cgv~~p~~~   72 (73)
T cd04660           1 CNMDL-DLLAECQPYVTGPN--PPPPPSRECCAALRRA---DLPCLCRYKTSLV-LQ-IIDPDKAVYLPAKCGLPLPPSS   72 (73)
T ss_pred             CCCCH-HHHHHHHHHHcCCC--CCCCCCHHHHHHHHcC---CcCCEeeccCCCc-cc-ccCHHHHHHHHHHcCCCCCCCC
Confidence            45544 68999999999862  1136999999999984   4569999998654 44 5999999999999999988766


Q ss_pred             C
Q 038771          110 C  110 (242)
Q Consensus       110 C  110 (242)
                      |
T Consensus        73 C   73 (73)
T cd04660          73 C   73 (73)
T ss_pred             C
Confidence            5

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.31  E-value=1.1e-12  Score=100.11  Aligned_cols=72  Identities=26%  Similarity=0.605  Sum_probs=55.0

Q ss_pred             CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-----CCceeeeeccCCCCCC-CCChHHHhhhcccCc
Q 038771           29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-----MDCACLVITANVPLQL-PINRTLSLSLPRACN  102 (242)
Q Consensus        29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-----~~CLC~~~~a~~~~~~-~IN~trAl~LP~aCG  102 (242)
                      +|.. ++..|++|++|++++.    ..|++.||++++++++..     ..|+|.-+.... .++ +||.++|++||++||
T Consensus         2 ~C~~-v~~~l~~C~~y~~g~~----~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~-~~~~~i~~~~a~~LP~~C~   75 (89)
T cd01960           2 SCGQ-VTSLLAPCLGYLTGGG----PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA-AGISGLNPGRAAGLPGKCG   75 (89)
T ss_pred             CHHH-HHhhHHhHHHHHhCCC----CCCChHHhhhhHHHhhccCCCCchhhhhhcccccc-cccCCCCHHHHHhChHhcc
Confidence            5887 6779999999999863    689999999999998653     234444433322 233 399999999999999


Q ss_pred             CCCC
Q 038771          103 MGGV  106 (242)
Q Consensus       103 v~~p  106 (242)
                      ++.+
T Consensus        76 v~~~   79 (89)
T cd01960          76 VSIP   79 (89)
T ss_pred             cCCC
Confidence            9864

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.31  E-value=1.1e-12  Score=93.42  Aligned_cols=62  Identities=35%  Similarity=0.831  Sum_probs=52.4

Q ss_pred             cccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCC-ChHHHhhhcccCcC
Q 038771           38 FTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPI-NRTLSLSLPRACNM  103 (242)
Q Consensus        38 LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~I-N~trAl~LP~aCGv  103 (242)
                      |++|++|+++++    ..|+..||++++++++.+..|+|.++++......++ |.+++++||++||+
T Consensus         1 L~~C~~y~~~~~----~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGA----TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCC----CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            679999999862    689999999999999888899999998754322344 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.25  E-value=5.7e-12  Score=93.13  Aligned_cols=61  Identities=26%  Similarity=0.558  Sum_probs=53.1

Q ss_pred             cccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCC
Q 038771           36 SSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGV  106 (242)
Q Consensus        36 s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~p  106 (242)
                      .+|++|++|++++     ..||.+||+.||+    +..|||.+++++. +..+||.++|++|+++||+.++
T Consensus         4 ~~L~~C~~ai~~~-----~~Ps~~CC~~Lk~----~~~CLC~y~~~p~-l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG-----SPPSAACCAKLKE----QQSCLCQYAKNPS-LKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC-----CCCCHHHHHHHhc----CCCCeeeeecCcc-HHhhcCcHHHHHHHHHcCCCCC
Confidence            5899999999975     6899999999998    2489999998765 5557999999999999999875

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.82  E-value=4.5e-09  Score=75.16  Aligned_cols=75  Identities=36%  Similarity=0.833  Sum_probs=56.4

Q ss_pred             ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCC----CChHHHhhhcccCcCCC
Q 038771           30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLP----INRTLSLSLPRACNMGG  105 (242)
Q Consensus        30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~----IN~trAl~LP~aCGv~~  105 (242)
                      |.. ++..+.+|+.|+++.. .. ..|+..||++|+.+.  +..|+|.++.... ..+.    +|..+|..||+.||+..
T Consensus         1 C~~-~~~~~~~c~~~~~~~~-~~-~~p~~~CC~~l~~~~--~~~C~C~~~~~~~-~~~~~~~~~~~~~a~~lp~~C~~~~   74 (79)
T smart00499        1 CGQ-VLLQLAPCLSYLTGGS-PG-APPSQQCCSQLRGLN--SAQCRCLALRAAV-LGILEIPGVNAQNAASLPSACGVPP   74 (79)
T ss_pred             Chh-hhhhHHhhHHHHcCCC-CC-CCCchHHHHHHHHhc--ccCCcchhhhccc-ccccchhhhhHHHHHhhHHhcCCCC
Confidence            444 3457779999999752 12 578999999999986  6789999998654 3222    69999999999999986


Q ss_pred             CcCCC
Q 038771          106 VPVQC  110 (242)
Q Consensus       106 pP~~C  110 (242)
                      +...|
T Consensus        75 ~~~~C   79 (79)
T smart00499       75 PYTDC   79 (79)
T ss_pred             CCCCC
Confidence            53333

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.19  E-value=4.7e-08  Score=73.73  Aligned_cols=63  Identities=32%  Similarity=0.714  Sum_probs=51.6

Q ss_pred             ccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCC-----------CCCChHHHhhhcccCcCCC
Q 038771           37 SFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQ-----------LPINRTLSLSLPRACNMGG  105 (242)
Q Consensus        37 ~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~-----------~~IN~trAl~LP~aCGv~~  105 (242)
                      .|.+|..|++++.    ..|+..||++|+++   +..|.|..+.... .+           ..++..+|..||+.||+..
T Consensus        14 ~l~~c~~~~~~~~----~~~~~~CC~~L~~l---~~~C~C~~i~~~~-~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~   85 (90)
T PF00234_consen   14 RLSPCLPYLQGGC----QQPSQQCCQQLRQL---DPQCRCEAIRQMV-RQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSP   85 (90)
T ss_dssp             HHHGGHHHHTTSS----SHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred             cccccHHHHhccc----ccchHHHhHHHHHH---hHHhhCHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCC
Confidence            5889999999863    57999999999998   4579999987533 22           2589999999999999987


Q ss_pred             Cc
Q 038771          106 VP  107 (242)
Q Consensus       106 pP  107 (242)
                      +.
T Consensus        86 ~~   87 (90)
T PF00234_consen   86 PY   87 (90)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=93.82  E-value=0.048  Score=42.63  Aligned_cols=72  Identities=32%  Similarity=0.550  Sum_probs=49.8

Q ss_pred             ccccchhhhhCCCC-CCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCCCCCChHHHhhhc-ccCcCCCCcC-CC
Q 038771           37 SFTPCLNFITGSTS-NGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQLPINRTLSLSLP-RACNMGGVPV-QC  110 (242)
Q Consensus        37 ~LtPClpYLtg~s~-ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~~~IN~trAl~LP-~aCGv~~pP~-~C  110 (242)
                      +|--|.+-+..-.. .+ ..+...||.-++.+.+.+ ..|+|..++.+. +++.+|....+++- ..||-..|.. +|
T Consensus        10 kLgvCanvL~l~~~~~g-~~~~~~CC~ll~GL~dldAA~CLCtaikan~-lgi~~~~pv~l~llln~CGk~~P~gf~C   85 (85)
T cd01958          10 KLGVCANVLGLSLLLLG-TPAVQPCCPLIGGLADLDAAVCLCTAIKANI-LGISINIPVALSLLLNSCGRNVPPGFTC   85 (85)
T ss_pred             HhchhHhhhhccccccC-CCccchHHHHHcCchhhheeeeeeeeeeccc-cCcccccChhHHHHHHHHcCcCCCCCcC
Confidence            56677776632110 12 457799999999997665 459999999876 66666666666655 4699887654 55

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=91.40  E-value=0.038  Score=43.05  Aligned_cols=72  Identities=29%  Similarity=0.521  Sum_probs=47.8

Q ss_pred             ccccchhhhhCCC-CCCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCC-CCCChHHHh-hhcccCcCCCCcC-CC
Q 038771           37 SFTPCLNFITGST-SNGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQ-LPINRTLSL-SLPRACNMGGVPV-QC  110 (242)
Q Consensus        37 ~LtPClpYLtg~s-~ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~-~~IN~trAl-~LP~aCGv~~pP~-~C  110 (242)
                      +|.-|.+.+.-.. .-+ ..+...||.-++.+.+.+ ..|||..++.+. ++ +.||....+ .|-..||...|.. +|
T Consensus         8 kLgvC~~vL~l~~~~~g-~~~~~~CC~li~gL~d~~AA~CLC~aika~v-lg~i~~~ipv~l~~lln~CGk~~p~gf~C   84 (85)
T PF14547_consen    8 KLGVCANVLGLVNLVIG-NPPRQPCCSLIAGLADLDAAVCLCTAIKANV-LGLINVNIPVALNLLLNACGKTVPSGFTC   84 (85)
T ss_pred             hhhhhhhhhhhhccccC-CCCCCCcChHHhCcccchHHHHHHHHHhhhc-ccccccccccHHHHHHHHhCCcCcCCCcC
Confidence            6778888771110 011 346889999999997655 459999998776 55 444444443 4557799887654 76

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=81.23  E-value=7.3  Score=41.67  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=14.5

Q ss_pred             hhcccCcCCCCcC--CCCCCCCCCCC
Q 038771           96 SLPRACNMGGVPV--QCKASGTPLPA  119 (242)
Q Consensus        96 ~LP~aCGv~~pP~--~C~~~~ap~Pa  119 (242)
                      -+|..||+..||.  -=++.+.|.|+
T Consensus       520 ~~~~~~~iP~PP~~pp~gG~g~pppP  545 (1102)
T KOG1924|consen  520 LLPIDGGIPPPPPLPPTGGTGPPPPP  545 (1102)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            5677888887765  22454444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-06
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	9e-04

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 35  ISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMS---TSMD--CACLVITANVPLQLPI 89
            S+  PC+++  G      + P+  CC  ++SL +   T+ D   AC  +         +
Sbjct: 8   ASAIAPCISYARG----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL 63

Query: 90  NRTLSLSLPRACN 102
           N   + S+P  C 
Sbjct: 64  NAGNAASIPSKCG 76

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 35  ISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMS---TSMD--CACLVITANVPLQLPI 89
            SS  PC+ ++ G  +         CC+ ++++ +   T+ D   AC  +         +
Sbjct: 8   SSSLAPCIPYVRGGGA-----VPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGV 62

Query: 90  NRTLSLSLPRACN 102
           N   + +LP  C 
Sbjct: 63  NPNNAAALPGKCG 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.43
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.41
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.41
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.38
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.37
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.35
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.35
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.33
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.32
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	92.04

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.43  E-value=2e-14  Score=111.14  Aligned_cols=79  Identities=24%  Similarity=0.627  Sum_probs=60.6

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCC-----CceeeeeccCCCCCCCCChHHHhhhcccCc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSM-----DCACLVITANVPLQLPINRTLSLSLPRACN  102 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~-----~CLC~~~~a~~~~~~~IN~trAl~LP~aCG  102 (242)
                      .+|.+ ++..|.||++|++++     ..|+..||+++|+|++...     .|+|.-+.+......+||.++|.+||++||
T Consensus         2 isC~~-v~~~L~pCl~Yv~g~-----~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~Cg   75 (93)
T 2ljo_A            2 ISCGA-VTSDLSPCLTYLTGG-----PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCG   75 (93)
T ss_dssp             CSSHH-HHHHHHHHHHHHTTS-----SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHT
T ss_pred             CCHHH-HHHHHHhHHHHHcCC-----CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcC
Confidence            57998 778999999999985     4699999999999987653     244444433221234799999999999999


Q ss_pred             CCCC----cC-CCCC
Q 038771          103 MGGV----PV-QCKA  112 (242)
Q Consensus       103 v~~p----P~-~C~~  112 (242)
                      ++.+    +. +|+.
T Consensus        76 V~~p~~Is~~~dC~~   90 (93)
T 2ljo_A           76 VNIPYKISTTTNCNT   90 (93)
T ss_dssp             CCCSSCCSTTCCGGG
T ss_pred             CCCCCCCCCCCCCCC
Confidence            9887    33 7765

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.41  E-value=1.9e-14  Score=110.72  Aligned_cols=72  Identities=26%  Similarity=0.664  Sum_probs=59.9

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-------CCceeeeeccCCCCCCCCChHHHhhhccc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-------MDCACLVITANVPLQLPINRTLSLSLPRA  100 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-------~~CLC~~~~a~~~~~~~IN~trAl~LP~a  100 (242)
                      .+|++ +...|.||++|++++   + ..|++.||++||++++..       ..|+|++..... ++ +||.++|++||++
T Consensus         2 ~~C~~-v~~~L~pCl~y~~~~---~-~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~-~~-~in~~~A~~LP~~   74 (93)
T 1afh_A            2 ISCGQ-VASAIAPCISYARGQ---G-SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG-VS-GLNAGNAASIPSK   74 (93)
T ss_dssp             CSSHH-HHHHHGGGHHHHTTS---C-CSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTT-ST-TCCHHHHHHHHHH
T ss_pred             CChHH-HHHhccCcHHHHcCC---C-CCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccc-cc-CcCHHHHHHHHHH
Confidence            57998 677999999999986   2 679999999999997432       359999876544 55 8999999999999


Q ss_pred             CcCCCC
Q 038771          101 CNMGGV  106 (242)
Q Consensus       101 CGv~~p  106 (242)
                      ||++.+
T Consensus        75 C~v~~p   80 (93)
T 1afh_A           75 CGVSIP   80 (93)
T ss_dssp             HHCCCS
T ss_pred             cCCCCC
Confidence            999875

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.41  E-value=9.5e-15  Score=112.14  Aligned_cols=72  Identities=21%  Similarity=0.566  Sum_probs=59.2

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-------CCceeeeeccCCCCCCCCChHHHhhhccc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-------MDCACLVITANVPLQLPINRTLSLSLPRA  100 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-------~~CLC~~~~a~~~~~~~IN~trAl~LP~a  100 (242)
                      .+|+. +...|.||++|++++     ..|+++||++||++++.+       ..|+|++..... ++ +||.++|++||++
T Consensus         2 ~~C~~-v~~~L~pCl~y~~~~-----~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~-~~-~in~~~A~~LP~~   73 (92)
T 2alg_A            2 ITCGQ-VSSSLAPCIPYVRGG-----GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSAS-VP-GVNPNNAAALPGK   73 (92)
T ss_dssp             CCHHH-HHHHHGGGHHHHHHC-----SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-ST-TCCHHHHHHHHHH
T ss_pred             CChHH-HHHhccCcHHHHcCC-----CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccc-cC-ccChHHHHHHHHH
Confidence            46888 667999999999986     458899999999997432       469999875543 55 8999999999999


Q ss_pred             CcCCCCc
Q 038771          101 CNMGGVP  107 (242)
Q Consensus       101 CGv~~pP  107 (242)
                      ||++++.
T Consensus        74 Cgv~~p~   80 (92)
T 2alg_A           74 CGVSIPY   80 (92)
T ss_dssp             TTCCCSS
T ss_pred             cCCCCCC
Confidence            9998753

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.38  E-value=1.9e-14  Score=106.81  Aligned_cols=73  Identities=21%  Similarity=0.523  Sum_probs=58.6

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCCc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVP  107 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~pP  107 (242)
                      .+|++ +...|++|++|++++.  . ..|+.+||++||+   .+..|||.+++++....++||.++|++||++||+++++
T Consensus         3 ~~C~~-~~~~L~pC~~yv~~~~--~-~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            3 DLCGM-SQDELNECKPAVSKEN--P-TSPSQPCCTALQH---ADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CBTTB-CHHHHHHHGGGGBSSS--C-CCCCHHHHHHHTT---CCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCSCCC
T ss_pred             chHHh-HHHhHhhCHHHHcCCC--C-CCCCHHHHHHHHh---cCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCCCCC
Confidence            57988 5668999999999741  3 6799999999997   34689999998532123469999999999999998764

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.37  E-value=1.1e-13  Score=106.00  Aligned_cols=70  Identities=29%  Similarity=0.637  Sum_probs=57.5

Q ss_pred             CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-------CCceeeeeccCCCCCCCCChHHHhhhcccC
Q 038771           29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-------MDCACLVITANVPLQLPINRTLSLSLPRAC  101 (242)
Q Consensus        29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-------~~CLC~~~~a~~~~~~~IN~trAl~LP~aC  101 (242)
                      +|++ +...|.||++|++++   + . |+.+||++||++++.+       ..|+|++..... ++ +||.++|++||++|
T Consensus         2 ~C~~-v~~~L~pCl~y~~~~---~-~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~-~~-~in~~~A~~LP~~C   73 (90)
T 1bwo_A            2 DCGH-VDSLVRPCLSYVQGG---P-G-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARG-IH-NLNEDNARSIPPKC   73 (90)
T ss_dssp             CHHH-HHHHHGGGHHHHTTC---S-C-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTT-CT-TCCHHHHHTHHHHH
T ss_pred             CHHH-HHHhhcccHHHHcCC---C-C-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhc-cC-CcCHHHHHHHHHHc
Confidence            6887 677999999999986   2 4 9999999999998543       359998665443 44 79999999999999


Q ss_pred             cCCCC
Q 038771          102 NMGGV  106 (242)
Q Consensus       102 Gv~~p  106 (242)
                      |++.+
T Consensus        74 ~v~~p   78 (90)
T 1bwo_A           74 GVNLP   78 (90)
T ss_dssp             TCCCS
T ss_pred             CCCCC
Confidence            99875

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.35  E-value=1.1e-13  Score=105.91  Aligned_cols=70  Identities=24%  Similarity=0.627  Sum_probs=56.9

Q ss_pred             CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-------CCceeeeeccCCCCCCCCChHHHhhhcccC
Q 038771           29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-------MDCACLVITANVPLQLPINRTLSLSLPRAC  101 (242)
Q Consensus        29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-------~~CLC~~~~a~~~~~~~IN~trAl~LP~aC  101 (242)
                      +|++ +...|.||++|++++   + . |+.+||++||++++.+       ..|+|++..... ++ +||.++|++||++|
T Consensus         2 ~C~~-v~~~L~pCl~yv~~~---~-~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~-~~-~in~~~A~~LP~~C   73 (91)
T 1siy_A            2 TCGQ-VQGNLAQCIGFLQKG---G-V-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGA-VR-GINPNNAEALPGKC   73 (91)
T ss_dssp             CTTT-THHHHHHHHHHHTSC---S-C-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTC-CS-SCCHHHHHHHHHHH
T ss_pred             CHHH-HHHhccCcHHHHhCC---C-C-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccc-cC-CcCHHHHHHHHHHc
Confidence            6888 677999999999986   2 4 9999999999997653       259998554332 44 79999999999999


Q ss_pred             cCCCC
Q 038771          102 NMGGV  106 (242)
Q Consensus       102 Gv~~p  106 (242)
                      |++++
T Consensus        74 gv~~p   78 (91)
T 1siy_A           74 GVNIP   78 (91)
T ss_dssp             TCCCS
T ss_pred             CCCCC
Confidence            99875

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.35  E-value=3.9e-14  Score=108.76  Aligned_cols=70  Identities=27%  Similarity=0.690  Sum_probs=57.5

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-------CCceeeeeccCCCCCCCCChHHHhhhccc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-------MDCACLVITANVPLQLPINRTLSLSLPRA  100 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-------~~CLC~~~~a~~~~~~~IN~trAl~LP~a  100 (242)
                      .+|++ +...|.||++|++++   + . |+ .||++||++++.+       ..|+|++..... ++ +||.++|++||++
T Consensus         2 ~~C~~-v~~~L~pCl~y~~~~---~-~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~-~~-~in~~~A~~LP~~   72 (91)
T 1t12_A            2 ITCGQ-VTSNLAPCLAYLRNT---G-P-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGA-IS-GINLGKAAGLPST   72 (91)
T ss_dssp             CCHHH-HHHHTHHHHHHHTTS---S-C-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHH-CT-TCCHHHHHHHHHH
T ss_pred             CChHH-HHHhccCcHHHHcCC---C-C-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccc-cC-CcChhHHHHHHHH
Confidence            57988 677999999999986   3 5 88 9999999998753       359998654332 55 8999999999999


Q ss_pred             CcCCCC
Q 038771          101 CNMGGV  106 (242)
Q Consensus       101 CGv~~p  106 (242)
                      ||++.+
T Consensus        73 C~v~~p   78 (91)
T 1t12_A           73 CGVNIP   78 (91)
T ss_dssp             TTCCCS
T ss_pred             cCCCCC
Confidence            999875

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.33  E-value=1.4e-13  Score=100.19  Aligned_cols=64  Identities=19%  Similarity=0.450  Sum_probs=54.4

Q ss_pred             ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCC
Q 038771           30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGV  106 (242)
Q Consensus        30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~p  106 (242)
                      |+.   +.|.+|++|++++     ..|+.+||++||+.    ..|+|.++++.. +..+||.++|++||++||++++
T Consensus         2 C~~---~~L~pC~~~v~~~-----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            2 CQA---SQLAVCASAILSG-----AKPSGECCGNLRAQ----QGCFCQYAKDPT-YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCS---STTHHHHHHHTTC-----CCCCHHHHHHHHHH----SSHHHHGGGCST-THHHHTCHHHHHHHHHHTSCCS
T ss_pred             CCh---hhcccCHHHHcCC-----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC
Confidence            655   5899999999985     57999999999984    689999887655 4446999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.32  E-value=1.4e-13  Score=100.81  Aligned_cols=68  Identities=24%  Similarity=0.519  Sum_probs=56.7

Q ss_pred             CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCCcC
Q 038771           29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPV  108 (242)
Q Consensus        29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~pP~  108 (242)
                      .|+.   +.|.+|++|++++     ..|+.+||++||+.    ..|+|.++++.. +..+||.++|++||++||++++  
T Consensus         2 ~C~~---~~L~pC~~~v~~~-----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P--   66 (69)
T 1l6h_A            2 GCNA---GQLTVCTGAIAGG-----ARPTAACCSSLRAQ----QGCFCQFAKDPR-YGRYVNSPNARKAVSSCGIALP--   66 (69)
T ss_dssp             CSTT---TTHHHHHHHHTTC-----CSTTHHHHHHHHHH----HHHHHHHTTCSS-HHHHTTTTTGGGCCCCCSSCSC--
T ss_pred             CCCh---hhcccCHHHHcCC-----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC--
Confidence            4775   5899999999985     57999999999984    579999887654 4446999999999999999875  


Q ss_pred             CCC
Q 038771          109 QCK  111 (242)
Q Consensus       109 ~C~  111 (242)
                      +|+
T Consensus        67 ~C~   69 (69)
T 1l6h_A           67 TCH   69 (69)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            574

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=92.04  E-value=0.033  Score=42.09  Aligned_cols=67  Identities=25%  Similarity=0.566  Sum_probs=49.4

Q ss_pred             ccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCCCCCChHHHhhhc-ccCcCCCCcC-CCCC
Q 038771           37 SFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQLPINRTLSLSLP-RACNMGGVPV-QCKA  112 (242)
Q Consensus        37 ~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~~~IN~trAl~LP-~aCGv~~pP~-~C~~  112 (242)
                      +|--|.+-+.+.     ..+...||.-++.+.+.+ ..|+|..++.   +++ +|...+++|- ..||...|+. +|..
T Consensus        10 kLgvCanvL~g~-----~~~~~~CC~Ll~GL~dleAAvCLCtaik~---Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~   79 (80)
T 1hyp_A           10 DLSICLNILGGS-----LGTVDDCCALIGGLGDIEAIVCLCIQLRA---LGI-LNLNRNLQLILNSCGRSYPSNATCPR   79 (80)
T ss_dssp             CCGGGGGGGGTC-----CTTHHHHHHHHHTSCHHHHHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhHHHHHhCcC-----CCCCCccchhhhCcchhhhhhhhhhhccc---cce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence            577899888542     337789999999986544 3599998873   455 6777777754 6899998775 8863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	4e-10
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	5e-09

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 32  TSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMD--CACLVITANVPLQLPI 89
             + S+  PC+++  G  S   +    +   SL +   T+ D   AC  +         +
Sbjct: 5   GQVASAIAPCISYARGQGSGP-SAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL 63

Query: 90  NRTLSLSLPRACN 102
           N   + S+P  C 
Sbjct: 64  NAGNAASIPSKCG 76

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 32  TSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMS---TSMD--CACLVITANVPLQ 86
             + S   PCL ++ G        P+  CC+ ++ L +   +S D    C  +       
Sbjct: 4   GQVDSKMKPCLTYVQGGPG-----PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58

Query: 87  LPINRTLSLSLPRACN 102
             +N   + S+P  CN
Sbjct: 59  HNLNLNNAASIPSKCN 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.38
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.37
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.79
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.74
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	81.7

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.38  E-value=2.9e-14  Score=108.03  Aligned_cols=80  Identities=21%  Similarity=0.534  Sum_probs=60.4

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCC-----CceeeeeccCCCCCCCCChHHHhhhcccCc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSM-----DCACLVITANVPLQLPINRTLSLSLPRACN  102 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~-----~CLC~~~~a~~~~~~~IN~trAl~LP~aCG  102 (242)
                      .+|.+ ++..|+||++|++|+.    ..|++.||+++++|++...     .|+|.-+.+......+||.+||.+||++||
T Consensus         2 i~C~~-v~~~l~pCl~Yltg~~----~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~   76 (93)
T d1fk5a_           2 ISCGQ-VASAIAPCISYARGQG----SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCG   76 (93)
T ss_dssp             CCHHH-HHHHHGGGHHHHTTCS----SSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred             CCHHH-HHHHhhhhHHHHhCCC----CCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcC
Confidence            57998 7789999999999863    6899999999999987542     255544433221234799999999999999


Q ss_pred             CCCC----cC-CCCC
Q 038771          103 MGGV----PV-QCKA  112 (242)
Q Consensus       103 v~~p----P~-~C~~  112 (242)
                      ++++    +. +|+.
T Consensus        77 v~l~~pis~~~dCs~   91 (93)
T d1fk5a_          77 VSIPYTISTSTDCSR   91 (93)
T ss_dssp             CCCSSCCSTTCCGGG
T ss_pred             CCCCCCCCCCCCCCc
Confidence            9875    22 6764

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.37  E-value=2.9e-14  Score=107.75  Aligned_cols=73  Identities=22%  Similarity=0.534  Sum_probs=57.3

Q ss_pred             CCChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCC-----CceeeeeccCCCCCCCCChHHHhhhcccCc
Q 038771           28 TPCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSM-----DCACLVITANVPLQLPINRTLSLSLPRACN  102 (242)
Q Consensus        28 ~~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~-----~CLC~~~~a~~~~~~~IN~trAl~LP~aCG  102 (242)
                      .+|.+ ++..|+||++|++++     .+|++.||+++++|++...     .|+|.-+.+......+||.+||.+||++||
T Consensus         1 i~C~~-v~~~l~pCl~Yl~g~-----~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~   74 (91)
T d1mida_           1 LNCGQ-VDSKMKPCLTYVQGG-----PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCN   74 (91)
T ss_dssp             CCHHH-HHHHHGGGHHHHTTC-----SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred             CCHHH-HHHHHHhhHHHHcCC-----CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcC
Confidence            36888 678999999999985     5799999999999987543     355555543221234799999999999999


Q ss_pred             CCCC
Q 038771          103 MGGV  106 (242)
Q Consensus       103 v~~p  106 (242)
                      ++.+
T Consensus        75 v~~p   78 (91)
T d1mida_          75 VNVP   78 (91)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9886

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.79  E-value=3.6e-10  Score=81.48  Aligned_cols=64  Identities=19%  Similarity=0.450  Sum_probs=56.5

Q ss_pred             ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCC
Q 038771           30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGV  106 (242)
Q Consensus        30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~p  106 (242)
                      |+.   .+|.+|++.++++     ..||.+||+.||+.    ..|||+|+.++. +..+||..+|.++-+.|||.+|
T Consensus         2 C~p---~~L~~C~~Ai~~g-----~~PS~~CC~kLkeQ----~~ClC~Y~kdP~-~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQA---SQLAVCASAILSG-----AKPSGECCGNLRAQ----QGCFCQYAKDPT-YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCG---GGGGGGHHHHHHC-----CCCCHHHHHHHHHH----GGGHHHHTTCTT-THHHHTSHHHHHHHHHTTCCCC
T ss_pred             CCh---hhccccHHHHhcC-----CCCcHHHHHHHHhc----CCccceecCCcc-HHHHcCCHHHHHHHHhcCCCCC
Confidence            665   4899999999986     68999999999985    469999999877 6668999999999999999876

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.74  E-value=3.9e-10  Score=81.68  Aligned_cols=65  Identities=23%  Similarity=0.481  Sum_probs=56.9

Q ss_pred             CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCC
Q 038771           29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGV  106 (242)
Q Consensus        29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~p  106 (242)
                      .|+.   .+|.+|++.++++     ..||.+||+.||+.    ..|||.|+.++. +..+||..+|.++-..|||.+|
T Consensus         2 ~C~p---~~L~~C~~ai~~g-----~~PS~~CC~kLkeQ----~~ClC~Y~k~P~-~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNA---GQLTVCTGAIAGG-----ARPTAACCSSLRAQ----QGCFCQFAKDPR-YGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTT---TTHHHHHHHHTTC-----CSTTHHHHHHHHHH----HHHHHHHTTCSS-HHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCCh---hhccccHHHHhCC-----CCCcHHHHHHHHhc----CCccceeccCcc-HHHHcCCHHHHHHHHhcCCCCC
Confidence            4776   4899999999986     67999999999985    369999999876 6668999999999999999876

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=81.70  E-value=0.14  Score=36.38  Aligned_cols=67  Identities=22%  Similarity=0.516  Sum_probs=46.5

Q ss_pred             ccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCCCCCChHHHhh-hcccCcCCCCcC-CCCC
Q 038771           37 SFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQLPINRTLSLS-LPRACNMGGVPV-QCKA  112 (242)
Q Consensus        37 ~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~~~IN~trAl~-LP~aCGv~~pP~-~C~~  112 (242)
                      +|.-|.+-+.+.     ..+...||.-++.+.+.+ ..|+|..+++.. +   +|...+++ |-..||-..|+. +|..
T Consensus         5 Klg~C~nvLg~~-----~~~~~~CC~Ll~GL~dleAAvCLCtaika~~-l---lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGS-----LGTVDDCCALIGGLGDIEAIVCLCIQLRALG-I---LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTC-----CTTHHHHHHHHHTSCHHHHHHHHHHHHHHHT-C---SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCc-----cCCCCCcchHHhhHHHHHHHHHHHHHHHHhh-h---ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            455688877653     346789999999986544 359999998643 2   55554444 445799988775 8865