Citrus Sinensis ID: 038776

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MSWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccccccccccccccccccccEEccccccccccccccccccccccEEccccccEEEcccccccccccccccccccccEEcccHHHHcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccEEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEE
Coil and Loop (DISEMBL)
MSWLIFSLQALAFCFSLHEflgasafsvsgnETDRAALLEFKSKITNdalgvlgswndsihfcewygvtcsprhqrvtildlqnlklagtlpphignlsflqkldlrnnsftneippqighLRRLQILYLQInsfdgeipasisncSNLLVVSLALNHLagkipsefgslsklQFLSTTannltgnipsslgnlsslrglslsrngfygsipdtfgglkNLVNLSLVVNnlsgtipplifnissiqtfdvgsnyiegempldlgttlpnlrifsitgnqft
Flexible Loop (DISEMBL)
MSWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPldlgttlpnlrifsitgnqft
Low Complexity Region (SEG)
MSWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPsslgnlsslrglslsrngFYGSIPDTFGGLKnlvnlslvvnnlsGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered region (IsUnstruct)
**WLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT*****
Disordered Region (DISOPRED)
*SWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered Region (DISEMBL)
MSWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered Region (DISPRO)
*SWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.882	0.245	0.470	1e-57
C0LGT6	1031	LRR receptor-like serine/	no	no	0.893	0.243	0.488	9e-57
Q9SD62	1025	Putative receptor-like pr	no	no	0.793	0.217	0.468	5e-51
Q9FL28	1173	LRR receptor-like serine/	no	no	0.882	0.211	0.380	6e-39
Q9LP24	1120	Probable leucine-rich rep	no	no	0.861	0.216	0.385	5e-37
Q9C9H7	847	Receptor-like protein 12	no	no	0.886	0.293	0.366	1e-35
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.861	0.231	0.364	1e-35
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.871	0.222	0.381	4e-34
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.918	0.257	0.339	2e-33
O49545	1003	Leucine-rich repeat recep	no	no	0.918	0.257	0.333	3e-33

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 155/251 (61%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGT 90
           +ETDR ALL+FKS+++ D   VL SWN S   C W GVTC  +++RVT L+L  L+L G 
Sbjct: 22  DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81

Query: 91  LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLL 150
           + P IGNLSFL  LDL  N F   IP ++G L RL+ L + IN   G IP  + NCS LL
Sbjct: 82  ISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLL 141

Query: 151 VVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS 210
            + L  N L G +PSE GSL+ L  L+   NN+ G +P+SLGNL+ L  L+LS N   G 
Sbjct: 142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270
           IP     L  + +L LV NN SG  PP ++N+SS++   +G N+  G +  DLG  LPNL
Sbjct: 202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query: 271 RIFSITGNQFT 281
             F++ GN FT
Sbjct: 262 LSFNMGGNYFT 272

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  220 bits (561), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 159/252 (63%), Gaps = 1/252 (0%)

Query: 31  NETDRAALLEFKSKIT-NDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAG 89
           NETD  ALLEFKS+++ N+   VL SWN S  FC W GVTC  R +RV  L+L   KL G
Sbjct: 28  NETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTG 87

Query: 90  TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNL 149
            + P IGNLSFL+ L+L +NSF + IP ++G L RLQ L +  N  +G IP+S+SNCS L
Sbjct: 88  VISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRL 147

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209
             V L+ NHL   +PSE GSLSKL  L  + NNLTGN P+SLGNL+SL+ L  + N   G
Sbjct: 148 STVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRG 207

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN 269
            IPD    L  +V   + +N+ SG  PP ++NISS+++  +  N   G +  D G  LPN
Sbjct: 208 EIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267

Query: 270 LRIFSITGNQFT 281
           LR   +  NQFT
Sbjct: 268 LRRLLLGTNQFT 279

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/250 (46%), Positives = 156/250 (62%)

Query: 32  ETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTL 91
           ETD+ ALLEFKS+++  +  VLGSWNDS+  C W GV C  +H+RVT +DL  LKL G +
Sbjct: 38  ETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97

Query: 92  PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLV 151
            P +GNLSFL+ L+L +N F   IP ++G+L RLQ L +  N F G IP  +SNCS+L  
Sbjct: 98  SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157

Query: 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           + L+ NHL   +P EFGSLSKL  LS   NNLTG  P+SLGNL+SL+ L    N   G I
Sbjct: 158 LDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEI 217

Query: 212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
           P     LK ++   + +N  +G  PP I+N+SS+    +  N   G +  D G+ LPNL+
Sbjct: 218 PGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQ 277

Query: 272 IFSITGNQFT 281
           I  +  N FT
Sbjct: 278 ILYMGINSFT 287

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/276 (38%), Positives = 142/276 (51%), Gaps = 28/276 (10%)

Query: 32  ETDRAALLEFKSKITNDALGVLGSWN--DSIHFCEWYGVTCSPRHQRVTILDLQNLKLAG 89
           E +  AL  FK+ I+ND LGVL  W    S+  C W G+TC      V++  L+  +L G
Sbjct: 28  EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEK-QLEG 86

Query: 90  TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG------------ 137
            L P I NL++LQ LDL +NSFT +IP +IG L  L  L L +N F G            
Sbjct: 87  VLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNI 146

Query: 138 ------------EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185
                       ++P  I   S+L+++    N+L GKIP   G L  LQ      N+LTG
Sbjct: 147 FYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTG 206

Query: 186 NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI 245
           +IP S+G L++L  L LS N   G IP  FG L NL +L L  N L G IP  I N SS+
Sbjct: 207 SIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSL 266

Query: 246 QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              ++  N + G++P +LG  L  L+   I  N+ T
Sbjct: 267 VQLELYDNQLTGKIPAELG-NLVQLQALRIYKNKLT 301

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/275 (38%), Positives = 139/275 (50%), Gaps = 33/275 (12%)

Query: 37  ALLEFKSKITNDALGVLGSW------NDSIHFCEWYGVTCSPR----------------H 74
           ALL++KS  TN +   L SW      N S     WYGV+C+ R                 
Sbjct: 36  ALLKWKSTFTNSS--KLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTF 93

Query: 75  QRVTILDLQNLK--------LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQ 126
           Q    + L NL         L+GT+PP  GNLS L   DL  N  T EI P +G+L+ L 
Sbjct: 94  QDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLT 153

Query: 127 ILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN 186
           +LYL  N     IP+ + N  ++  ++L+ N L G IPS  G+L  L  L    N LTG 
Sbjct: 154 VLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGV 213

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246
           IP  LGN+ S+  L+LS+N   GSIP T G LKNL+ L L  N L+G IPP I N+ S+ 
Sbjct: 214 IPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMT 273

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              +  N + G +P  LG  L NL + S+  N  T
Sbjct: 274 NLALSQNKLTGSIPSSLG-NLKNLTLLSLFQNYLT 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 141/281 (50%), Gaps = 32/281 (11%)

Query: 32  ETDRAALLEFKSKI-TNDALGVL----GSWNDSIHFCEWYGVTCSPRH------------ 74
           +  R ALLEF+ +   N +  ++    G WN S   C W GVTC+ +             
Sbjct: 36  DDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTF 95

Query: 75  --------------QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG 120
                         Q +  LDL N  L G +P  +GNLS L  ++L  N F  EIP  IG
Sbjct: 96  LNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIG 155

Query: 121 HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
           +L +L+ L L  N   GEIP+S+ N S L+ + L  N L GKIP   G L +L+ LS  +
Sbjct: 156 NLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLAS 215

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           NNL G IPSSLGNLS+L  L L+ N   G +P + G L  L  +S   N+LSG IP    
Sbjct: 216 NNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFA 275

Query: 241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N++ +  F + SN      P D+ +   NL  F ++ N F+
Sbjct: 276 NLTKLSIFVLSSNNFTSTFPFDM-SIFHNLEYFDVSYNSFS 315

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/269 (36%), Positives = 142/269 (52%), Gaps = 27/269 (10%)

Query: 23  ASAFSVSGNETDRAALLEFKSKITND-ALGVLGSW--NDSIHFC-EWYGVTCS------- 71
           + +F+VS    +  ALL++KS  TN  +   L SW   ++  FC  WYGV CS       
Sbjct: 39  SCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRL 98

Query: 72  ----------------PRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
                                +T +DL   + +GT+ P  G  S L+  DL  N    EI
Sbjct: 99  NLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEI 158

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175
           PP++G L  L  L+L  N  +G IP+ I   + +  +++  N L G IPS FG+L+KL  
Sbjct: 159 PPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVN 218

Query: 176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           L    N+L+G+IPS +GNL +LR L L RN   G IP +FG LKN+  L++  N LSG I
Sbjct: 219 LYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEI 278

Query: 236 PPLIFNISSIQTFDVGSNYIEGEMPLDLG 264
           PP I N++++ T  + +N + G +P  LG
Sbjct: 279 PPEIGNMTALDTLSLHTNKLTGPIPSTLG 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 141/278 (50%), Gaps = 33/278 (11%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWN--DSIHFCEWYGVTCSPRHQR-VTILDLQNLKL 87
           NE  R  LLEFK+   ND+ G L SWN  DS + C W G+ C+  H R VT +DL  + L
Sbjct: 25  NEEGRV-LLEFKA-FLNDSNGYLASWNQLDS-NPCNWTGIACT--HLRTVTSVDLNGMNL 79

Query: 88  AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCS 147
           +GTL P I  L  L+KL++  N  +  IP  +   R L++L L  N F G IP  ++   
Sbjct: 80  SGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMII 139

Query: 148 NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF 207
            L  + L  N+L G IP + G+LS LQ L   +NNLTG IP S+  L  LR +   RNGF
Sbjct: 140 TLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGF 199

Query: 208 YGSIPDTFGG------------------------LKNLVNLSLVVNNLSGTIPPLIFNIS 243
            G IP    G                        L+NL +L L  N LSG IPP + NIS
Sbjct: 200 SGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNIS 259

Query: 244 SIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            ++   +  NY  G +P ++G      R++  T NQ T
Sbjct: 260 RLEVLALHENYFTGSIPREIGKLTKMKRLYLYT-NQLT 296

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 142/286 (49%), Gaps = 28/286 (9%)

Query: 23  ASAFSVSGNETDRAALLEFKSKITNDALG-VLGSWNDSIHFCEWYGVTCSPRHQRVTILD 81
           + +F+V+   T+  ALL  KS  T D    +L SWN S  FC W GVTC    + VT LD
Sbjct: 16  SHSFTVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLD 75

Query: 82  LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD----- 136
           L  L L+GTL   + +L  LQ L L  N  +  IPPQI +L  L+ L L  N F+     
Sbjct: 76  LSGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPD 135

Query: 137 --------------------GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176
                               G++P S++N + L  + L  N+ +GKIP+ +G+   L++L
Sbjct: 136 ELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYL 195

Query: 177 STTANNLTGNIPSSLGNLSSLRGLSLS-RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           + + N LTG IP  +GNL++LR L +   N F   +P   G L  LV        L+G I
Sbjct: 196 AVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEI 255

Query: 236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           PP I  +  + T  +  N   G +  +LG  + +L+   ++ N FT
Sbjct: 256 PPEIGKLQKLDTLFLQVNAFTGTITQELG-LISSLKSMDLSNNMFT 300

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 139/288 (48%), Gaps = 30/288 (10%)

Query: 23  ASAFSVSGNETDRAALLEFKSKIT---NDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTI 79
           +  F+ S   ++  ALL  K+ +T   +D    L SW  S  FC W GVTC    + VT 
Sbjct: 14  SHTFTASRPISEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTS 73

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD--- 136
           LDL  L L+GTL P + +L  LQ L L  N  +  IPP+I  L  L+ L L  N F+   
Sbjct: 74  LDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSF 133

Query: 137 ----------------------GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174
                                 G++P S++N + L  + L  N+ AGKIP  +GS   ++
Sbjct: 134 PDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIE 193

Query: 175 FLSTTANNLTGNIPSSLGNLSSLRGLSLS-RNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           +L+ + N L G IP  +GNL++LR L +   N F   +P   G L  LV        L+G
Sbjct: 194 YLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTG 253

Query: 234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            IPP I  +  + T  +  N   G +  +LG TL +L+   ++ N FT
Sbjct: 254 EIPPEIGKLQKLDTLFLQVNVFSGPLTWELG-TLSSLKSMDLSNNMFT 300

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
224119102	1007	predicted protein [Populus trichocarpa]	0.943	0.263	0.575	5e-78
255569851	710	serine-threonine protein kinase, plant-t	0.978	0.387	0.557	1e-77
224119022	1021	predicted protein [Populus trichocarpa]	0.957	0.263	0.56	2e-77
255585471	963	serine-threonine protein kinase, plant-t	0.950	0.277	0.547	1e-76
255575908	988	serine-threonine protein kinase, plant-t	0.886	0.252	0.573	2e-75
255575904	834	serine-threonine protein kinase, plant-t	0.893	0.300	0.568	8e-75
224145847	418	predicted protein [Populus trichocarpa]	0.935	0.629	0.541	1e-74
255581223	1015	receptor-kinase, putative [Ricinus commu	0.903	0.250	0.568	2e-71
224113119	1065	predicted protein [Populus trichocarpa]	0.957	0.252	0.525	3e-70
255570308	1033	receptor-kinase, putative [Ricinus commu	0.989	0.269	0.520	5e-70

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/271 (57%), Positives = 194/271 (71%), Gaps = 6/271 (2%)

Query: 11  LAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTC 70
           L  CF+      +SA S+  NETDR ALL+FKSKIT+D LG++  WN SIHFC W+GVTC
Sbjct: 18  LLLCFT------SSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWFGVTC 71

Query: 71  SPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL 130
           S +HQRV +LDLQ+LKL+G++ P+IGNLSFL+ L L++NSF++EIP QIGHL RLQIL L
Sbjct: 72  SQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLHRLQILAL 131

Query: 131 QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
             NSF GEIPAS+S+  NL+ + L  N L G+IP EFGS  KL  L    NNL G IP S
Sbjct: 132 HNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGTIPPS 191

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250
           LGN+SSL+ L L  N  +G++P T   L NL  LSL  N  SGTIPP + N+SS++TF V
Sbjct: 192 LGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLRTFQV 251

Query: 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           G N+ +G +P DLG +LPNL  FSI  NQFT
Sbjct: 252 GLNHFQGNLPPDLGISLPNLEFFSIYSNQFT 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569851|ref|XP_002525889.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534803|gb|EEF36493.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/280 (55%), Positives = 196/280 (70%), Gaps = 5/280 (1%)

Query: 2   SWLIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH 61
           S   F + AL  C     F+ AS+ + +GNETDR ALLEF++KI  D LGV  SWND++ 
Sbjct: 15  SSFCFHVVALLVC----NFIMASS-ATTGNETDRLALLEFRAKINGDPLGVFNSWNDTLQ 69

Query: 62  FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH 121
           FCEW GVTC  RHQRVT LDLQ L+L+G++ PH+GNLSFL++L L+NNSF+  IPPQIG 
Sbjct: 70  FCEWRGVTCGRRHQRVTKLDLQALRLSGSISPHVGNLSFLRELYLQNNSFSQSIPPQIGR 129

Query: 122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181
           LRRLQ L+L  NS  GEIP +IS CSNL+ + + +N L G IP E G LSK+Q +S   N
Sbjct: 130 LRRLQELFLNTNSLRGEIPPNISGCSNLVRIQVQVNQLEGSIPMEIGFLSKVQNISFGNN 189

Query: 182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN 241
           +LTG+IP SLGNLSSL+ L  S N F GS+P T G L+NL+ L L  N  SG IP  IFN
Sbjct: 190 HLTGSIPPSLGNLSSLKALYASDNNFSGSLPPTLGQLENLMLLQLSNNEFSGIIPASIFN 249

Query: 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +SSI  FD+ SN   G +P +LG   PN++ FSI+ NQF+
Sbjct: 250 LSSILAFDIRSNRFTGYLPSELGNNFPNIKFFSISLNQFS 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/275 (56%), Positives = 195/275 (70%), Gaps = 6/275 (2%)

Query: 12  AFCFSLHEFLGASAFSVS----GNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYG 67
           AFCF    FL  S  SV+     NETD  AL++FK+KI +D LG++ SWN +IHFC+W+G
Sbjct: 5   AFCFRSFVFL-LSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQWHG 63

Query: 68  VTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI 127
           V+C  RHQRV +L LQ+LKL+GT+ PHIGNLSFL++L L+NNSF +EIPPQ+G LR LQI
Sbjct: 64  VSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRSLQI 123

Query: 128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI 187
             L  NS  G+IP SIS+CSNL+ + +  N+L G+IP E GSL KL+ L+   N LTG I
Sbjct: 124 FSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTI 183

Query: 188 PSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246
           P SLGNLSSL  L L +N   +G++P T G LKNL  L+L+ N LSG IPP IFN+SS+ 
Sbjct: 184 PPSLGNLSSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLT 243

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             D+G N   G +P D+G +LPNL  FSI  NQFT
Sbjct: 244 ALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFT 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/272 (54%), Positives = 194/272 (71%), Gaps = 5/272 (1%)

Query: 10  ALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVT 69
            L  CFS       ++ ++SGNETD  ALLEFKSKIT+D   VL SWN++IHFC+W GVT
Sbjct: 21  VLILCFS-----STTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVT 75

Query: 70  CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILY 129
           C   H+RVT+LDL +LK++G++ P+IGNLSFL+ L+++NNSF +EIP QIG+LRRL+ L 
Sbjct: 76  CGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELR 135

Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS 189
           L  NS  G+IP +IS CSNL+ +SL  N L G +P E G LS LQ LS   N LTG+IP 
Sbjct: 136 LNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPH 195

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFD 249
           SLGNLS L+ LSL+ N   G +P++ G L+NL  LSL  N LSGTIP  +FN+SSI+  D
Sbjct: 196 SLGNLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLD 255

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +G N   G +P D+G  LPN+R F+I+ N+FT
Sbjct: 256 IGENNFHGNLPSDIGFLLPNIRWFAISSNEFT 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/260 (57%), Positives = 186/260 (71%)

Query: 22  GASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILD 81
            A A   + NETDR ALLEFK KI +D LG++ SWN S+HFC+W+GVTC  RHQRVT+LD
Sbjct: 34  AAFAMRSANNETDRLALLEFKDKIADDPLGMMSSWNSSLHFCQWHGVTCGRRHQRVTMLD 93

Query: 82  LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA 141
           L +LKL+G++ P++GNLSFL+KL L NNSF+++IPPQ GHLRRLQIL L  NSF GEIP 
Sbjct: 94  LGSLKLSGSISPYVGNLSFLRKLYLENNSFSHDIPPQSGHLRRLQILSLYNNSFGGEIPP 153

Query: 142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201
           +IS CSNL+ + L  N L GKIPS+  SL KL+      NNL G IP SLGNLSSL  LS
Sbjct: 154 NISACSNLVYLYLDGNKLVGKIPSQLTSLMKLKEFFFGRNNLIGTIPPSLGNLSSLWTLS 213

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPL 261
              N  +G +P++ G L NL  L+L  N  SGTIP  +FNISSI   DV  N+++G +P+
Sbjct: 214 GDTNKLHGVLPESLGRLTNLKYLALFENRFSGTIPSSVFNISSIVHIDVEGNHLQGTLPM 273

Query: 262 DLGTTLPNLRIFSITGNQFT 281
            LG +LP L+  SI+ NQFT
Sbjct: 274 SLGISLPQLQFISISSNQFT 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575904|ref|XP_002528849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531700|gb|EEF33523.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 186/257 (72%)

Query: 25  AFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQN 84
           A   + N+TDR ALL+FK KIT+D LGV+ SWN S+HFC+WYG+TCS RHQRVT LDL +
Sbjct: 37  AIGNANNQTDRLALLDFKDKITDDPLGVVSSWNRSLHFCKWYGITCSRRHQRVTRLDLSS 96

Query: 85  LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASIS 144
           LKL+G++ P++GNLSFL++L L NNSF+ EIPPQIGHLRRLQ L L  NS  GEIP++IS
Sbjct: 97  LKLSGSISPYVGNLSFLRELYLENNSFSYEIPPQIGHLRRLQSLSLYNNSISGEIPSNIS 156

Query: 145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR 204
            CSNL+ + L  N+L G+IP E  SL KL++     NNL G IP SL NLSS+   S  R
Sbjct: 157 ACSNLVYLYLDGNNLVGEIPEELTSLMKLEYFFLGKNNLIGTIPQSLRNLSSIDTFSAYR 216

Query: 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG 264
           N  +G +P++FG L NL  L+L  N  SG IP  IFN+SSI++ DVG N++ G +P+ L 
Sbjct: 217 NKLHGVLPESFGRLMNLRILTLYDNQFSGNIPSSIFNLSSIESIDVGINHLHGTLPMTLV 276

Query: 265 TTLPNLRIFSITGNQFT 281
            +LP+L  FSI  NQFT
Sbjct: 277 ISLPHLNFFSIGQNQFT 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145847|ref|XP_002336269.1| predicted protein [Populus trichocarpa] gi|222833133|gb|EEE71610.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/268 (54%), Positives = 189/268 (70%), Gaps = 5/268 (1%)

Query: 14  CFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPR 73
           CFS       +   ++ NETD+ AL+EFK+ ITND LGVL SWN+SIHFC+W+GV C  R
Sbjct: 28  CFS-----AEATARIAKNETDQLALVEFKTHITNDPLGVLRSWNNSIHFCQWHGVLCGRR 82

Query: 74  HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN 133
           HQRV  LDL + KLAG + PH+GNLSFL+ LDLRNNS + EIPP++G+L RL+ LYL  N
Sbjct: 83  HQRVIALDLGSYKLAGYISPHVGNLSFLRLLDLRNNSLSQEIPPELGNLSRLKYLYLNNN 142

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
           S  GEIP+++S C NL+   +  N L GKIP+EF +LSKL+     ANNLTG IP + GN
Sbjct: 143 SLSGEIPSNVSFCFNLIHFLVNWNRLVGKIPAEFATLSKLEMFFIHANNLTGGIPITFGN 202

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L+SL+  S ++N   GSIP T G L +L +++L  N LSG+IPP  FN+SSI  FD+  N
Sbjct: 203 LTSLQRFSATQNYIGGSIPATIGKLASLTHIALSGNRLSGSIPPSFFNLSSIIAFDIAYN 262

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +EG +P +LG TLPNL+   ++ NQFT
Sbjct: 263 QLEGTLPSNLGITLPNLQTLGLSANQFT 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 189/257 (73%)

Query: 24  SAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQ 83
           +A  ++GN TDR ALL+FK+KIT+D LG +  WNDS HFC+WYGVTCS RHQRV IL+L+
Sbjct: 24  AACVINGNLTDRLALLDFKAKITDDPLGFMPLWNDSTHFCQWYGVTCSRRHQRVAILNLR 83

Query: 84  NLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASI 143
           +L+LAG++ PHIGNLSFL+ L L+NNSF++ IPP++G LRRLQ L L  NS  G IP++I
Sbjct: 84  SLQLAGSISPHIGNLSFLRDLYLQNNSFSHGIPPEVGRLRRLQRLRLSNNSLTGNIPSNI 143

Query: 144 SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203
           S CS L  +  A N L G+IP E   L+KLQ +S   N  +G+IP S+GNLSSL+ LS  
Sbjct: 144 SACSKLSEIYFAYNQLEGEIPEELSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAP 203

Query: 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDL 263
            N   G+IPD  G L NL+ +SL VNNLSGTIPP I+N+SSI T ++  N I+G +P +L
Sbjct: 204 ENYLSGNIPDAIGQLNNLIFISLSVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNL 263

Query: 264 GTTLPNLRIFSITGNQF 280
           G TLPNL++F+I  N F
Sbjct: 264 GITLPNLQVFAIARNDF 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/280 (52%), Positives = 183/280 (65%), Gaps = 11/280 (3%)

Query: 3   W-LIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH 61
           W L F +  L+F FSL +          GNETD  +LL  K +IT+D LG L SWN+S H
Sbjct: 12  WPLFFLIIQLSFSFSLAQ----------GNETDIFSLLALKHQITDDPLGKLSSWNESTH 61

Query: 62  FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH 121
           FCEW GVTC  +HQRV  LDLQ+ KL+G+L PH+GN+SFL+ L+L NNSF   IP ++G 
Sbjct: 62  FCEWSGVTCGKKHQRVVQLDLQSCKLSGSLSPHVGNMSFLRTLNLENNSFGQNIPQELGS 121

Query: 122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181
           L RLQ L L  NSF GEIPA+IS CSNLL + L  N+L GK+P+EFGSLSKL+      N
Sbjct: 122 LFRLQALVLTNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFPRN 181

Query: 182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN 241
           NL G IP + GNLS +  +   +N   G IP + G LK L + S   NNLSGTIP  I+N
Sbjct: 182 NLFGEIPPAYGNLSHIEEIQGGQNNLQGDIPKSIGKLKRLKHFSFGTNNLSGTIPTSIYN 241

Query: 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +SS+  F V +N + G +P DLG TLPNL IF I   QF+
Sbjct: 242 LSSLTHFSVPANQLHGSLPRDLGLTLPNLEIFRIHTCQFS 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570308|ref|XP_002526114.1| receptor-kinase, putative [Ricinus communis] gi|223534611|gb|EEF36308.1| receptor-kinase, putative [Ricinus communis]

 Score =  270 bits (690), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/286 (52%), Positives = 193/286 (67%), Gaps = 8/286 (2%)

Query: 1   MSWLIFSLQALAFCFSLHEFLGASAFSVSG----NETDRAALLEFKSKITNDALGVLGSW 56
           M + +FS QA     SL  F G    S SG    NETD+ ALL FK++IT+D L +L SW
Sbjct: 1   MPYSLFSSQA---TVSLISFFGILCLSTSGEAHGNETDKLALLSFKAQITDDPLELLQSW 57

Query: 57  NDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP 116
           N + HFC+W GVTC  RHQRV  L+L +LKL+G+LP HIGNLSFL+ LDL NNS + EIP
Sbjct: 58  NATSHFCDWRGVTCGNRHQRVVKLELYSLKLSGSLPHHIGNLSFLRVLDLHNNSLSGEIP 117

Query: 117 PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176
            +IG+LRRLQ+L L+ NS  G+IPA+IS+CS+LL  ++  N L G IPS  G LSKL F 
Sbjct: 118 SEIGYLRRLQVLNLRNNSIVGKIPANISSCSSLLHFNVGGNRLMGDIPSALGKLSKLVFF 177

Query: 177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
               N LTG+IPSS GNLSSL+ L++  N   G+IPD  G L N+++  +  NN SG IP
Sbjct: 178 GVDRNTLTGSIPSSFGNLSSLQVLAIHVNKMNGNIPDELGRLTNVLDFIVHTNNFSGAIP 237

Query: 237 PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN-QFT 281
           P IFN+SS+   D+  N   G +P ++G +LPNL+ FS+  N +FT
Sbjct: 238 PPIFNLSSLVRMDLSVNNFRGNLPSNMGISLPNLQFFSVLMNYEFT 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.978	0.266	0.432	3.7e-50
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.889	0.243	0.428	3e-47
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.939	0.261	0.405	3.4e-46
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.893	0.248	0.406	1.5e-45
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.893	0.248	0.398	2.7e-43
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.982	0.339	0.350	6.2e-35
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.879	0.240	0.370	2.9e-34
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.914	0.219	0.342	8.4e-32
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.946	0.233	0.346	4.5e-31
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.850	0.210	0.344	5.2e-30

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 3.7e-50, P = 3.7e-50
 Identities = 121/280 (43%), Positives = 150/280 (53%)

Query:     4 LIFSLQALAFCFSLHEFLGASA-FSVSGNETDRAALLEFKSKIT-NDALGVLGSWNDSIH 61
             L FSL   A    L   + A A FS   NETD  ALLEFKS+++ N+   VL SWN S  
Sbjct:     3 LSFSLVFNALTLLLQVCIFAQARFS---NETDMQALLEFKSQVSENNKREVLASWNHSSP 59

Query:    62 FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH 121
             FC W GVTC  R +RV  L+L   KL G + P IGNLSFL+ L+L +NSF + IP ++G 
Sbjct:    60 FCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGR 119

Query:   122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181
             L RLQ L +  N  +G IP+S+SNCS L  V L+ NHL   +PSE GSLSKL  L  + N
Sbjct:   120 LFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKN 179

Query:   182 NLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFN 241
             NLTGN P                    G IPD    L              G  PP ++N
Sbjct:   180 NLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYN 239

Query:   242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             ISS+++  +  N   G +  D G  LPNLR   +  NQFT
Sbjct:   240 ISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFT 279

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 3.0e-47, P = 3.0e-47
 Identities = 107/250 (42%), Positives = 138/250 (55%)

Query:    32 ETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTL 91
             ETD+ ALLEFKS+++  +  VLGSWNDS+  C W GV C  +H+RVT +DL  LKL G +
Sbjct:    38 ETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97

Query:    92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLV 151
              P +GNLSFL+ L+L +N F   IP ++G+L RLQ L +  N F G IP  +SNCS+L  
Sbjct:    98 SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157

Query:   152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSI 211
             + L+ NHL   +P EFGSLSKL  LS   NNLTG  P                    G I
Sbjct:   158 LDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEI 217

Query:   212 PDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
             P     LK             G  PP I+N+SS+    +  N   G +  D G+ LPNL+
Sbjct:   218 PGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQ 277

Query:   272 IFSITGNQFT 281
             I  +  N FT
Sbjct:   278 ILYMGINSFT 287

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.4e-46, P = 3.4e-46
 Identities = 109/269 (40%), Positives = 146/269 (54%)

Query:    11 LAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTC 70
             L   FS H  LGA  F+   +ETDR ALLEFKS+++     VL SWN+S   C W  VTC
Sbjct:     5 LLLSFSAHLLLGADGFT---DETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTC 61

Query:    71 SPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL 130
               +H+RVT L+L  L+L G + P IGN+SFL  LDL +N+F   IP ++G+L RL+ LY+
Sbjct:    62 GRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYM 121

Query:   131 QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXX 190
               NS +G IPA++SNCS LL + L  N L   +PSE GSL+KL  L    NNL G +P  
Sbjct:   122 AFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRS 181

Query:   191 XXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQT-FD 249
                               G +PD    L              G  PP I+N+S+++  F 
Sbjct:   182 LGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFL 241

Query:   250 VGSNYIEGEMPLDLGTTLPNLRIFSITGN 278
              GS +  G +  D G  LPN+R  ++  N
Sbjct:   242 FGSGF-SGSLKPDFGNLLPNIRELNLGEN 269

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.5e-45, P = 1.5e-45
 Identities = 102/251 (40%), Positives = 134/251 (53%)

Query:    31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGT 90
             +ETDR ALL+FKS+++ D   VL SWN S   C W GVTC  +++RVT L+L  L+L G 
Sbjct:    22 DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81

Query:    91 LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLL 150
             + P IGNLSFL  LDL  N F   IP ++G L RL+ L + IN   G IP  + NCS LL
Sbjct:    82 ISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLL 141

Query:   151 VVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGS 210
              + L  N L G +PSE GSL+ L  L+   NN+ G +P                    G 
Sbjct:   142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   211 IPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270
             IP     L              G  PP ++N+SS++   +G N+  G +  DLG  LPNL
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   271 RIFSITGNQFT 281
               F++ GN FT
Sbjct:   262 LSFNMGGNYFT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.7e-43, P = 2.7e-43
 Identities = 100/251 (39%), Positives = 131/251 (52%)

Query:    31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGT 90
             +E+DR ALLE KS+++      L +WN+S   C W  V C  +H+RVT LDL  L+L G 
Sbjct:    22 DESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGV 81

Query:    91 LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLL 150
             + P IGNLSFL  LDL NNSF   IP ++G+L RL+ L +  N  +GEIPAS+SNCS LL
Sbjct:    82 ISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLL 141

Query:   151 VVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGS 210
              + L  N+L   +PSE GSL KL +L    N+L G  P                    G 
Sbjct:   142 YLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGE 201

Query:   211 IPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270
             IPD    L              G  PP  +N+SS++   +  N   G +  D G  LPN+
Sbjct:   202 IPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNI 261

Query:   271 RIFSITGNQFT 281
                S+ GN  T
Sbjct:   262 HELSLHGNFLT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 387 (141.3 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 100/285 (35%), Positives = 136/285 (47%)

Query:     5 IFSLQALAFC--FSLHEFLGASAFSVSGNET--DRAALLEFKSKITNDALGVLGSWNDSI 60
             + SL  L F   FS      +S+    G +   D  ALL FKS +       L SWN S 
Sbjct:     1 MISLPLLLFVLFFSALLLFPSSSDDDGGGDAAGDELALLSFKSSLLYQGGQSLASWNTSG 60

Query:    61 H--FCEWYGVTCSPRH-QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP 117
             H   C W GV C  RH  RV  L L++  LAG + P +GNLSFL+ L L +N  + +IP 
Sbjct:    61 HGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQ 120

Query:   118 QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS 177
             ++  L RLQ L L  NS  GEIPA++ N ++L V+ L  N L+G IPS  G L+ L  L+
Sbjct:   121 ELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLA 180

Query:   178 TTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPP 237
                N L+G+IP                    G+IPD    +              GT+P 
Sbjct:   181 LAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPT 240

Query:   238 LIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
               F N+ S+Q   +  N   G +P  +G    N+ IF+I  N F+
Sbjct:   241 NAFSNLPSLQEVYMYYNQFHGRIPASIGNA-SNISIFTIGLNSFS 284

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 383 (139.9 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 94/254 (37%), Positives = 125/254 (49%)

Query:    34 DRAALLEFKSKITNDALGVLGSWNDSIH--FCEWYGVTCSPRHQR----VTILDLQNLKL 87
             D  ALL FKS +       L SWN S H   C W GV C  R +R    V  L L++  L
Sbjct:    32 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNL 91

Query:    88 AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCS 147
             +G + P +GNLSFL++LDL +N  + EIPP++  L RLQ+L L  NS  G IPA+I  C+
Sbjct:    92 SGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACT 151

Query:   148 NLLVVSLALNHLAGKIPSEFG-SLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXX 206
              L  + L+ N L G IP E G SL  L  L    N L+G IP                  
Sbjct:   152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211

Query:   207 FYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTT 266
               G+IP + G L              G IP  I+N+SS++ F V  N + G +P +   T
Sbjct:   212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKT 271

Query:   267 LPNLRIFSITGNQF 280
             L  L +  +  N+F
Sbjct:   272 LHLLEVIDMGTNRF 285

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 8.4e-32, P = 8.4e-32
 Identities = 91/266 (34%), Positives = 128/266 (48%)

Query:    20 FLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWN--DSIHFCEWYGVTCSPRHQRV 77
             F G  A +    E +  AL  FK+ I+ND LGVL  W    S+  C W G+TC      V
Sbjct:    17 FFGI-ALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVV 75

Query:    78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             ++  L+  +L G L P I NL++LQ LDL +NSFT +IP +IG L  L  L L +N F G
Sbjct:    76 SVSLLEK-QLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSG 134

Query:   138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXX 197
              IP+ I    N+  + L  N L+G +P E    S L  +    NNLTG IP         
Sbjct:   135 SIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194

Query:   198 XXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEG 257
                        GSIP + G L              G IP    N+ ++Q+  +  N +EG
Sbjct:   195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254

Query:   258 EMPLDLG--TTLPNLRIFSITGNQFT 281
             ++P ++G  ++L  L ++    NQ T
Sbjct:   255 DIPAEIGNCSSLVQLELYD---NQLT 277

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 4.5e-31, P = 4.5e-31
 Identities = 97/280 (34%), Positives = 135/280 (48%)

Query:     4 LIFSLQALAFCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHF- 62
             +IF L   A  FS   F   SA S   +ET   AL  FK  + +D LG L SWN S    
Sbjct:     5 VIFFLHFAAIFFS--RFHHTSAIS---SETQ--ALTSFKLSL-HDPLGALESWNQSSPSA 56

Query:    63 -CEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH 121
              C+W+GV+C     RV  L L  L L G L P +G L+ L+KL L  N     +P  +  
Sbjct:    57 PCDWHGVSCFSG--RVRELRLPRLHLTGHLSPRLGELTQLRKLSLHTNDINGAVPSSLSR 114

Query:   122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181
                L+ LYL  NSF G+ P  I N  NL V++ A N L G + S+      L+++  ++N
Sbjct:   115 CVFLRALYLHYNSFSGDFPPEILNLRNLQVLNAAHNSLTGNL-SDVTVSKSLRYVDLSSN 173

Query:   182 NLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFN 241
              ++G IP                  F G IP T G L+             GTIP  + N
Sbjct:   174 AISGKIPANFSADSSLQLINLSFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSALAN 233

Query:   242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              SS+  F V  N++ G +P+ LGT + +L++ S++ N FT
Sbjct:   234 CSSLIHFSVTGNHLTGLIPVTLGT-IRSLQVISLSENSFT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 5.2e-30, P = 5.2e-30
 Identities = 85/247 (34%), Positives = 123/247 (49%)

Query:    37 ALLEFKSKITNDALGVLGSWNDSIHF--CEWYGVTCSPRHQRVTILDLQNLKLAGTLPPH 94
             AL  FK  + +D LG L SW+ S     C+W GV C+  + RVT + L  L+L+G +   
Sbjct:    31 ALTAFKLNL-HDPLGALTSWDPSTPAAPCDWRGVGCT--NHRVTEIRLPRLQLSGRISDR 87

Query:    95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
             I  L  L+KL LR+NSF   IP  + +  RL  ++LQ NS  G++P ++ N ++L V ++
Sbjct:    88 ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNV 147

Query:   155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDT 214
             A N L+G+IP   G  S LQFL  ++N  +G IP                    G IP +
Sbjct:   148 AGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPAS 205

Query:   215 FGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
              G L+             GT+P  I N SS+       N I G +P   G  LP L + S
Sbjct:   206 LGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGA-LPKLEVLS 264

Query:   275 ITGNQFT 281
             ++ N F+
Sbjct:   265 LSNNNFS 271

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01680026 hypothetical protein (1007 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  163 bits (413), Expect = 3e-45
 Identities = 103/290 (35%), Positives = 144/290 (49%), Gaps = 48/290 (16%)

Query: 38  LLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTI------------------ 79
           LL FKS I ND L  L +WN S   C W G+TC+   + V+I                  
Sbjct: 34  LLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRL 92

Query: 80  -----LDLQNLKLAGTLPPHI-----------------------GNLSFLQKLDLRNNSF 111
                ++L N +L+G +P  I                       G++  L+ LDL NN  
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML 152

Query: 112 TNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLS 171
           + EIP  IG    L++L L  N   G+IP S++N ++L  ++LA N L G+IP E G + 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 172 KLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
            L+++    NNL+G IP  +G L+SL  L L  N   G IP + G LKNL  L L  N L
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 232 SGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           SG IPP IF++  + + D+  N + GE+P +L   L NL I  +  N FT
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  144 bits (364), Expect = 8e-39
 Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 1/202 (0%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL N  L+G +P  IG+ S L+ LDL  N    +IP  + +L  L+ L L  N   G+I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 140 PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199
           P  +    +L  + L  N+L+G+IP E G L+ L  L    NNLTG IPSSLGNL +L+ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEM 259
           L L +N   G IP +   L+ L++L L  N+LSG IP L+  + +++   + SN   G++
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
           P+ L T+LP L++  +  N+F+
Sbjct: 325 PVAL-TSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (337), Expect = 3e-35
 Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
            + +LDL    L G +P  + NL+ L+ L L +N    +IP ++G ++ L+ +YL  N+ 
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
            GEIP  I   ++L  + L  N+L G IPS  G+L  LQ+L    N L+G IP S+ +L 
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255
            L  L LS N   G IP+    L+NL  L L  NN +G IP  + ++  +Q   + SN  
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
            GE+P +LG    NL +  ++ N  T
Sbjct: 345 SGEIPKNLGKH-NNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (306), Expect = 5e-31
 Identities = 74/202 (36%), Positives = 99/202 (49%), Gaps = 1/202 (0%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL    L G +P  +GNL  LQ L L  N  +  IPP I  L++L  L L  NS  GEI
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 140 PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199
           P  +    NL ++ L  N+  GKIP    SL +LQ L   +N  +G IP +LG  ++L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEM 259
           L LS N   G IP+      NL  L L  N+L G IP  +    S++   +  N   GE+
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
           P +  T LP +    I+ N   
Sbjct: 421 PSEF-TKLPLVYFLDISNNNLQ 441

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (301), Expect = 2e-30
 Identities = 71/179 (39%), Positives = 98/179 (54%)

Query: 87  LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNC 146
           L+G +P  IG L+ L  LDL  N+ T  IP  +G+L+ LQ L+L  N   G IP SI + 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG 206
             L+ + L+ N L+G+IP     L  L+ L   +NN TG IP +L +L  L+ L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 207 FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT 265
           F G IP   G   NL  L L  NNL+G IP  + +  ++    + SN +EGE+P  LG 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (275), Expect = 5e-27
 Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
           Q++  LDL +  L+G +P  +  L  L+ L L +N+FT +IP  +  L RLQ+L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
           F GEIP ++   +NL V+ L+ N+L G+IP    S   L  L   +N+L G IP SLG  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
            SLR + L  N F G +P  F  L  +  L +  NNL G I    +++ S+Q   +  N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
             G +P   G+    L    ++ NQF+
Sbjct: 464 FFGGLPDSFGSK--RLENLDLSRNQFS 488

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (270), Expect = 3e-26
 Identities = 77/216 (35%), Positives = 106/216 (49%), Gaps = 25/216 (11%)

Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI 132
           +H  +T+LDL    L G +P  + +   L KL L +NS   EIP  +G  R L+ + LQ 
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 133 NSFDGEIPAS-----------ISN-------------CSNLLVVSLALNHLAGKIPSEFG 168
           NSF GE+P+            ISN               +L ++SLA N   G +P  FG
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 169 SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228
           S  +L+ L  + N  +G +P  LG+LS L  L LS N   G IPD     K LV+L L  
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 229 NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG 264
           N LSG IP     +  +   D+  N + GE+P +LG
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 3e-25
 Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 2/198 (1%)

Query: 83  QNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS 142
           QN KL+G +PP I +L  L  LDL +NS + EIP  +  L+ L+IL+L  N+F G+IP +
Sbjct: 269 QN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 143 ISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL 202
           +++   L V+ L  N  +G+IP   G  + L  L  + NNLTG IP  L +  +L  L L
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLD 262
             N   G IP + G  ++L  + L  N+ SG +P     +  +   D+ +N ++G +   
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN-S 446

Query: 263 LGTTLPNLRIFSITGNQF 280
               +P+L++ S+  N+F
Sbjct: 447 RKWDMPSLQMLSLARNKF 464

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (254), Expect = 3e-24
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 1/179 (0%)

Query: 82  LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA 141
           LQ+   +G LP     L  +  LD+ NN+    I  +   +  LQ+L L  N F G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201
           S      L  + L+ N  +G +P + GSLS+L  L  + N L+G IP  L +   L  L 
Sbjct: 471 S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260
           LS N   G IP +F  +  L  L L  N LSG IP  + N+ S+   ++  N++ G +P
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             V  LD+ N  L G +     ++  LQ L L  N F   +P   G  +RL+ L L  N 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
           F G +P  + + S L+ + L+ N L+G+IP E  S  KL  L  + N L+G IP+S   +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP----LIFNISSI 245
             L  L LS+N   G IP   G +++LV +++  N+L G++P     L  N S++
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 144 SNCSNLLVVSLALNH--LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201
           S      +  L L++  L G IP++   L  LQ ++ + N++ GNIP SLG+++SL  L 
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
           LS N F GSIP++ G L +L  L+L  N+LSG +P
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 65  WYGVTC----SPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG 120
           W G  C    +     +  L L N  L G +P  I  L  LQ ++L  NS    IPP +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 121 HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
            +  L++L L  NSF+G IP S+   ++L +++L  N L+G++P+  G       L   +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR----LLHRAS 519

Query: 181 NNLTGN 186
            N T N
Sbjct: 520 FNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query: 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL 159
           F+  L L N      IP  I  LR LQ + L  NS  G IP S+ + ++L V+ L+ N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 160 AGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
            G IP   G L+ L+ L+   N+L+G +P++LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 6e-12
 Identities = 33/82 (40%), Positives = 48/82 (58%)

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
           G IP  IS   +L  ++L+ N + G IP   GS++ L+ L  + N+  G+IP SLG L+S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 197 LRGLSLSRNGFYGSIPDTFGGL 218
           LR L+L+ N   G +P   GG 
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 8/204 (3%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
            +  LDL + K+  +LP  + NL  L+ LDL  N   +++P  + +L  L  L L  N  
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
             ++P  I   S L  + L+ N +  ++ S   +L  L  L  + N L  ++P S+GNLS
Sbjct: 199 -SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI-FNISSIQTFDVGSNY 254
           +L  L LS N    S   + G L NL  L L  N+LS  +P +    +      ++    
Sbjct: 256 NLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 255 IEGEMPLDLGTTLPNLRIFSITGN 278
              E+ L+      N+     T +
Sbjct: 314 KALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 31 NETDRAALLEFKSKITNDALGVLGSWNDS-IHFCEWYGVTCS 71
             DR ALL FKS +  D  G L SWN S    C W GVTC 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE 258
           GL L   G  G IP+    L++L +++L  N++ G IPP + +I+S++  D+  N   G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 259 MPLDLGTTLPNLRIFSITGN 278
           +P  LG  L +LRI ++ GN
Sbjct: 482 IPESLG-QLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 82  LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHL-RRLQILYLQINSFDGEIP 140
             NL    +    +  L+ L  LDL NN+ T +IPP IG L   L+ L L  N     +P
Sbjct: 99  DLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLP 156

Query: 141 ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGL 200
           + + N  NL  + L+ N L+  +P    +LS L  L  + N ++ ++P  +  LS+L  L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214

Query: 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260
            LS N     +  +   LKNL  L L  NN    +P  I N+S+++T D+ +N I     
Sbjct: 215 DLSNN-SIIELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDLSNNQISS--- 269

Query: 261 LDLGTTLPNLRIFSITGNQFT 281
           +    +L NLR   ++GN  +
Sbjct: 270 ISSLGSLTNLRELDLSGNSLS 290

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.8
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
PLN03150	623	hypothetical protein; Provisional	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
PLN03150	623	hypothetical protein; Provisional	99.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
PRK15386	426	type III secretion protein GogB; Provisional	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.62
KOG4308	478	consensus LRR-containing protein [Function unknown	95.98
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.3
KOG4308	478	consensus LRR-containing protein [Function unknown	94.28
smart00370	26	LRR Leucine-rich repeats, outliers.	93.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.56
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.02
KOG4341	483	consensus F-box protein containing LRR [General fu	88.1
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.72
KOG4341	483	consensus F-box protein containing LRR [General fu	85.35
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.77

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-33  Score=269.68  Aligned_cols=245  Identities=37%  Similarity=0.610  Sum_probs=158.5

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC
Q 038776           31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS  110 (281)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  110 (281)
                      .+.|+.++++|++.+. ++......|....++|.|.|+.|... .+++.|+++++.+.+.++..+..+++|++|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            4467889999999985 56566788988888999999999853 689999999999998888888899999999999999


Q ss_pred             CccCCchhcc-CCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCc
Q 038776          111 FTNEIPPQIG-HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS  189 (281)
Q Consensus       111 ~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  189 (281)
                      +.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|.
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  182 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN  182 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence            8877877544 777777777777776654443  2345555555555555444454455555555555555554444444


Q ss_pred             cccCCCCCCeEEc------------------------ccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCC
Q 038776          190 SLGNLSSLRGLSL------------------------SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI  245 (281)
Q Consensus       190 ~l~~l~~L~~L~l------------------------~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  245 (281)
                      .+.++++|++|++                        ++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence            4444444444444                        4444444444444555555555555555554455555555555


Q ss_pred             CEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          246 QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       246 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|++++|.+.+.+|..+.. +++|+.|++++|.+
T Consensus       263 ~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l  296 (968)
T PLN00113        263 QYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSL  296 (968)
T ss_pred             CEEECcCCeeeccCchhHhh-ccCcCEEECcCCee
Confidence            55555555555555554444 55555555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3e-27  Score=228.69  Aligned_cols=205  Identities=38%  Similarity=0.630  Sum_probs=130.6

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            45556666666666566666666677777777777666666666666777777777776666666666666666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence            66666666666666666666666666666666666666666666666666666655665565666666666666666555


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|..+.++++|+.|++++|.+.+.+|..+.. +++|+.|++++|++
T Consensus       300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l  344 (968)
T PLN00113        300 IPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKF  344 (968)
T ss_pred             CChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCC
Confidence            5555555556666666666555555554443 55555555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=1e-22  Score=175.90  Aligned_cols=85  Identities=20%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|++++|.++..-..+|..+.+|..|.|+.|+++..-+..|.++++|+.|+|..|++...-...|..+++|+.|.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            44555555555555444445555555555555555555322334555555555555555554222233333333333333


Q ss_pred             ccCCC
Q 038776          155 ALNHL  159 (281)
Q Consensus       155 ~~n~~  159 (281)
                      ..|.+
T Consensus       253 qrN~I  257 (873)
T KOG4194|consen  253 QRNDI  257 (873)
T ss_pred             hhcCc
Confidence            33333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=4.8e-22  Score=171.71  Aligned_cols=205  Identities=20%  Similarity=0.205  Sum_probs=120.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++.+|.+...-.+.+..++.||.||||.|.+...--..|..-.++++|+|++|.++..-...|.++.+|.+|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            67888888888877665666777777777777777776332234555566777777777776444455666666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccC------------------------CCCCCeEEcccCCCccc
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN------------------------LSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------------------------l~~L~~L~l~~n~~~~~  210 (281)
                      +.|+++-.-+..|.+++.|+.|++..|.+.-..-..|..                        +.++++|++..|+++..
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            666666333334555666666666666554221122333                        44455555555555444


Q ss_pred             ccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       211 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      -..++.+++.|+.|++++|.+.+.-++.+...++|+.|+|++|+|+ .++..-+..+..|+.|.|++|.+
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccch
Confidence            4445555666666666666666555555656666666666666665 34433333345555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.84  E-value=3.2e-23  Score=153.51  Aligned_cols=165  Identities=33%  Similarity=0.564  Sum_probs=110.2

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +..+.+++.|.+++|.++ .+|..++.+.+|+.|++++|+++ .+|..++++++|+.|+++-|++. .+|.+|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345566666667777666 55666666777777777777666 66666667777777777666665 6666677777777


Q ss_pred             EEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776          175 FLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN  253 (281)
Q Consensus       175 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  253 (281)
                      .|++.+|.+.. .+|..+..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|++++|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            77776666653 35556666666777777777665 66666777777777777777666 56777777777777777777


Q ss_pred             cccccCChhhhh
Q 038776          254 YIEGEMPLDLGT  265 (281)
Q Consensus       254 ~l~~~~p~~~~~  265 (281)
                      .++ .+|.+++.
T Consensus       184 rl~-vlppel~~  194 (264)
T KOG0617|consen  184 RLT-VLPPELAN  194 (264)
T ss_pred             eee-ecChhhhh
Confidence            766 55555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=3.4e-22  Score=174.19  Aligned_cols=200  Identities=28%  Similarity=0.417  Sum_probs=118.1

Q ss_pred             CcEEEEEcCCCCcce-ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEE
Q 038776           75 QRVTILDLQNLKLAG-TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L  152 (281)
                      ++++.+.+..|++.. -+|+.+..+..|+.||+|+|++. ..|..+..-+++-+|+|++|++. .+|.. +-++.-|-+|
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            344444444444431 23444445555555555555554 44554545555555555555554 33322 2344444445


Q ss_pred             EcccCCCCCCCchhcCCCCC------------------------CCEEeCcCCccc-ccCCccccCCCCCCeEEcccCCC
Q 038776          153 SLALNHLAGKIPSEFGSLSK------------------------LQFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       153 ~l~~n~~~~~~p~~~~~l~~------------------------L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~  207 (281)
                      |+++|++. .+|+-+..+.+                        |+.|.+++++-+ ..+|.++..+.+|+.++++.|.+
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            55554444 33433444444                        444444443322 34666777777777777777777


Q ss_pred             cccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      . .+|+.+-.+++|+.|+|++|+++ .+....+.+.+|++|+++.|+++ .+|..+++ +++|+.|++.+|+++
T Consensus       235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLT  304 (1255)
T ss_pred             C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCccc
Confidence            6 67777777777888888888777 45555566677788888888887 78888877 888888888888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.81  E-value=3.7e-22  Score=173.96  Aligned_cols=200  Identities=30%  Similarity=0.397  Sum_probs=142.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCccc------------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD------------------  136 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~------------------  136 (281)
                      ++...|++++|++....-+.|.++..|-.||+|+|.+. .+|+.+..+.+|+.|.|++|.+.                  
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            44556666776666332233556666677777777766 56666667777777777776432                  


Q ss_pred             -------ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          137 -------GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       137 -------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                             ..+|.++..+.+|+.+|++.|.+. ..|+.+.++++|+.|++++|+++ .+....+.+.+|++|+++.|+++ 
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-
Confidence                   235666667777777777777776 77777778888888888888877 44444556677777888888777 


Q ss_pred             cccccCCCCCCCCeEecccCcCc-CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLS-GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+|+.+..+++|+.|++.+|+++ .-+|+-++.+.+|+.++.++|.+. .+|..+++ |++|+.|.|+.|++
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR-C~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR-CVKLQKLKLDHNRL  351 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh-hHHHHHhcccccce
Confidence            77888888888888888888765 347777888888888888888776 77777776 77777777777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.80  E-value=9.7e-22  Score=145.65  Aligned_cols=156  Identities=28%  Similarity=0.484  Sum_probs=145.8

Q ss_pred             cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776          120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG  199 (281)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  199 (281)
                      -.+.+.+.|.++.|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..++.++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            36778889999999999 88999999999999999999998 89999999999999999999997 88999999999999


Q ss_pred             EEcccCCCcc-cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          200 LSLSRNGFYG-SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       200 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      |++.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- .+|.+++. +..|+.|++.+|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhcccc
Confidence            9999999874 58888999999999999999998 88999999999999999999998 89999998 999999999999


Q ss_pred             cCC
Q 038776          279 QFT  281 (281)
Q Consensus       279 ~l~  281 (281)
                      +++
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=4.7e-22  Score=164.89  Aligned_cols=198  Identities=29%  Similarity=0.481  Sum_probs=119.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-----------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-----------------  137 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------  137 (281)
                      ..++++.+.++.+. .+|++++.+..++.++.++|.+. .+|..+..+.++..++.+.|.+..                 
T Consensus        68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            34566666666665 44555555555555555555555 455555555555555555555440                 


Q ss_pred             -----cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776          138 -----EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       138 -----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  212 (281)
                           ..|..+.++.+|..+++.+|++. ..|+..-.++.|++++...|-+. .+|+.++.+.+|..|++..|.+. .+|
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP  222 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP  222 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence                 34444444444444444444444 22332223556666666666554 56666777777777777777765 455


Q ss_pred             ccCCCCCCCCeEecccCcCcCCCCcccc-CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          213 DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       .|.+++.|++++++.|++. .+|.... ++.++..||+++|+++ ++|.+++. +.+|++||+|+|.++
T Consensus       223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS  288 (565)
T ss_pred             -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc
Confidence             5666666666666666665 4554443 6777788888888887 77877777 777888888888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=3.7e-21  Score=159.61  Aligned_cols=196  Identities=27%  Similarity=0.456  Sum_probs=162.6

Q ss_pred             EEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776           77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  156 (281)
                      +..+.+++|.+. .+.+.+..+..+.++++.+|.+. +.|.+++.+..++.++.+.|.+. .+|..+..+.+|+.+++++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            567788999888 44556889999999999999998 89999999999999999999999 8999999999999999999


Q ss_pred             CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccC-----------------------CCCCCeEEcccCCCcccccc
Q 038776          157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN-----------------------LSSLRGLSLSRNGFYGSIPD  213 (281)
Q Consensus       157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----------------------l~~L~~L~l~~n~~~~~~~~  213 (281)
                      |.+. .+|++++.+-.+..++..+|+++ ..|..+..                       ++.|++++...|-+. .+|+
T Consensus       124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~  200 (565)
T KOG0472|consen  124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPP  200 (565)
T ss_pred             ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCCh
Confidence            9887 67777777777777777777765 44444444                       445555555555554 7788


Q ss_pred             cCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .++.+.+|..||+..|++. .+| .|..+..|++|+++.|++. .+|.+.+++++++..||++.|+++
T Consensus       201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            8888889999999999887 566 7888888999999999998 899999988999999999999874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.72  E-value=2.9e-19  Score=148.07  Aligned_cols=123  Identities=24%  Similarity=0.296  Sum_probs=88.9

Q ss_pred             CCccccceeeCCC--CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC-Ccccc
Q 038776           61 HFCEWYGVTCSPR--HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI-NSFDG  137 (281)
Q Consensus        61 ~~c~~~g~~~~~~--~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~  137 (281)
                      ..|.-.|..-.+.  .+..+.+++..|+++...+..|+.++.||.|||++|.++..-|++|.+++++..|.+.+ |+++ 
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            3455555544333  26778899999999966667799999999999999999999999999999998887766 8888 


Q ss_pred             cCCc-cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccc
Q 038776          138 EIPA-SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT  184 (281)
Q Consensus       138 ~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  184 (281)
                      .+|. .|.++..|+.|.+.-|++.-...+.+..++++..|.+-+|.+.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            4543 5666666666666666665444445555555555555555443

>PLN03210 Resistant to P

Probab=99.70  E-value=3.4e-16  Score=153.30  Aligned_cols=103  Identities=25%  Similarity=0.282  Sum_probs=58.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|++.++.+. .++..+..+++|++|+++++.....+|. +..+++|+.|++++|.....+|..+.++++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            56677777777665 4555566666777777766543334543 556666666666665544456666666666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      ++|.....+|..+ ++++|+.|++++
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsg  713 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSG  713 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCC
Confidence            6554333444332 334444444433

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=9.6e-17  Score=148.63  Aligned_cols=180  Identities=27%  Similarity=0.465  Sum_probs=91.4

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      .++.|++++|.+. .+|..+.  .+|++|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4555666666555 3444332  35666666666655 4444332  34566666666655 4554432  356666666


Q ss_pred             cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776          156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  235 (281)
                      +|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+  .++|+.|++++|.+++ +
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-L  340 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-L  340 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-C
Confidence            66665 4454332  35666666666665 2333221  23444445554444 233222  1355555555555552 4


Q ss_pred             CccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       236 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|++
T Consensus       341 P~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L  379 (754)
T PRK15370        341 PASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL  379 (754)
T ss_pred             Chhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence            43332  45666666666655 455433   24566666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=3.7e-18  Score=145.41  Aligned_cols=206  Identities=22%  Similarity=0.279  Sum_probs=114.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCC---CCEEECCCCCCcc----CCchhccCC-CcccEeeccCCccccc----CCcc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSF---LQKLDLRNNSFTN----EIPPQIGHL-RRLQILYLQINSFDGE----IPAS  142 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~p~~  142 (281)
                      .+++.++++++.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            56677777776665443433333333   7777777776652    222334455 6677777777766521    2333


Q ss_pred             CcCCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccccccc
Q 038776          143 ISNCSNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGSIPDT  214 (281)
Q Consensus       143 l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~  214 (281)
                      +..+++|++|++++|.+++.    ++..+...++|+.|++++|.+.+.    ++..+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            44556677777777766632    223344556777777777766532    2233445666777777777665421111


Q ss_pred             CC-----CCCCCCeEecccCcCcC----CCCccccCCCCCCEEEcccCcccccCChhhh---hCC-CCCcEEEcccccC
Q 038776          215 FG-----GLKNLVNLSLVVNNLSG----TIPPLIFNISSIQTFDVGSNYIEGEMPLDLG---TTL-PNLRIFSITGNQF  280 (281)
Q Consensus       215 ~~-----~l~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~---~~~-~~L~~L~l~~N~l  280 (281)
                      +.     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.+++.....+.   ... +.|+.+++.+|+|
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            11     23567777777776651    2233444556677777777777644222111   113 5677777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.69  E-value=6.6e-16  Score=151.30  Aligned_cols=194  Identities=23%  Similarity=0.290  Sum_probs=111.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|++|++
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            5677888877654445554 6677788888888776555777777777777777777765444555543 4455555555


Q ss_pred             ccC---------------------CCCCCCchhc------------------------------CCCCCCCEEeCcCCcc
Q 038776          155 ALN---------------------HLAGKIPSEF------------------------------GSLSKLQFLSTTANNL  183 (281)
Q Consensus       155 ~~n---------------------~~~~~~p~~~------------------------------~~l~~L~~L~l~~n~~  183 (281)
                      ++|                     .+. .+|..+                              ...++|+.|++++|..
T Consensus       712 sgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~  790 (1153)
T PLN03210        712 SGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS  790 (1153)
T ss_pred             CCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence            443                     322 222211                              0123566677777766


Q ss_pred             cccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhh
Q 038776          184 TGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDL  263 (281)
Q Consensus       184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~  263 (281)
                      .+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|++++|.+. .+|.++
T Consensus       791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si  865 (1153)
T PLN03210        791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWI  865 (1153)
T ss_pred             ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHH
Confidence            66677777788888888888775444566544 4555666665554333233322   133444444444444 344444


Q ss_pred             hhCCCCCcEEEccc
Q 038776          264 GTTLPNLRIFSITG  277 (281)
Q Consensus       264 ~~~~~~L~~L~l~~  277 (281)
                      .. +++|+.|++++
T Consensus       866 ~~-l~~L~~L~L~~  878 (1153)
T PLN03210        866 EK-FSNLSFLDMNG  878 (1153)
T ss_pred             hc-CCCCCEEECCC
Confidence            33 44444444444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=4.6e-18  Score=144.85  Aligned_cols=206  Identities=23%  Similarity=0.262  Sum_probs=152.7

Q ss_pred             CcEEEEEcCCCCcce------ecCccCcCCCCCCEEECCCCCCccCCchhccCCCc---ccEeeccCCcccc----cCCc
Q 038776           75 QRVTILDLQNLKLAG------TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRR---LQILYLQINSFDG----EIPA  141 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~n~~~~----~~p~  141 (281)
                      +.++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            568889988877652      23445677889999999999987656666655555   9999999998873    2333


Q ss_pred             cCcCC-CCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc--
Q 038776          142 SISNC-SNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS--  210 (281)
Q Consensus       142 ~l~~l-~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~--  210 (281)
                      .+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.    ++..+...++|++|++++|.+.+.  
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            45566 8999999999998843    334566778999999999998742    334455667999999999998743  


Q ss_pred             --ccccCCCCCCCCeEecccCcCcCCCCcccc-----CCCCCCEEEcccCccccc----CChhhhhCCCCCcEEEccccc
Q 038776          211 --IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-----NISSIQTFDVGSNYIEGE----MPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       211 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~N~  279 (281)
                        ++..+..+++|+.|++++|.+++.....+.     ..+.|++|++++|.+++.    +...+. .+++|+.+++++|+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~  289 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCC
Confidence              345566789999999999998753222221     247899999999998732    222333 36899999999998


Q ss_pred             CC
Q 038776          280 FT  281 (281)
Q Consensus       280 l~  281 (281)
                      ++
T Consensus       290 l~  291 (319)
T cd00116         290 FG  291 (319)
T ss_pred             Cc
Confidence            75

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=4.6e-16  Score=143.63  Aligned_cols=76  Identities=26%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEc
Q 038776          196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSI  275 (281)
Q Consensus       196 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l  275 (281)
                      +|+.|++++|.++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.. +++|+.|++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~-L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNL  452 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhh-ccCCCeEEC
Confidence            4566666666665 34432   246777777777776 35543   246778888888888 78988876 999999999


Q ss_pred             ccccCC
Q 038776          276 TGNQFT  281 (281)
Q Consensus       276 ~~N~l~  281 (281)
                      ++|+|+
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=5.9e-16  Score=143.44  Aligned_cols=182  Identities=27%  Similarity=0.496  Sum_probs=147.6

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+.+.+++++++++ .+|..+.  ++++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            45678999998888 5666554  57999999999998 6776553  58999999999998 6776553  57999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|.++ .
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-A  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-c
Confidence            999998 7777654  58999999999998 5676553  58999999999998 4665443  57999999999998 4


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|..+.  ++|+.|++++|.++ .+|..+   .++|+.|++++|+|+
T Consensus       319 LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        319 LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT  359 (754)
T ss_pred             CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC
Confidence            665443  68999999999998 588655   378999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=3.8e-18  Score=154.54  Aligned_cols=197  Identities=25%  Similarity=0.397  Sum_probs=117.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++.+.+. .+|+.+..+.+|+.++..+|.+. .+|..+....+|+.|....|.+. .+|.....+..|++|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            56777888888777 45677778888888888887775 55555544555555555555544 44444445555555555


Q ss_pred             ccCCCC-------------------------------------------------CCCchhcCCCCCCCEEeCcCCcccc
Q 038776          155 ALNHLA-------------------------------------------------GKIPSEFGSLSKLQFLSTTANNLTG  185 (281)
Q Consensus       155 ~~n~~~-------------------------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~  185 (281)
                      ..|++.                                                 ....+.+...++|+.|++++|++. 
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence            555443                                                 333333444555666666666555 


Q ss_pred             cCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhh
Q 038776          186 NIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG  264 (281)
Q Consensus       186 ~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~  264 (281)
                      .+| ..+.++..|++|+++||.++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++.-......
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            333 34555556666666666655 55555556666666666666655 445 566677777777777777632211111


Q ss_pred             hCCCCCcEEEccccc
Q 038776          265 TTLPNLRIFSITGNQ  279 (281)
Q Consensus       265 ~~~~~L~~L~l~~N~  279 (281)
                      . .|+|++||++||.
T Consensus       474 p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  474 P-SPNLKYLDLSGNT  487 (1081)
T ss_pred             C-CcccceeeccCCc
Confidence            1 3678888888775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-17  Score=151.24  Aligned_cols=189  Identities=28%  Similarity=0.388  Sum_probs=143.5

Q ss_pred             CCCCcceecCccCcCCCCCCEEECCCCCCccCCchhcc--------------------------CCCcccEeeccCCccc
Q 038776           83 QNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG--------------------------HLRRLQILYLQINSFD  136 (281)
Q Consensus        83 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------------------~l~~L~~L~l~~n~~~  136 (281)
                      ..|.+. .+|+....++.|++|++..|.+. ..|+.+-                          .++.|+.|.+.+|.++
T Consensus       295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            334443 35565666888999999988876 4443221                          1345677788888888


Q ss_pred             ccCCccCcCCCCCcEEEcccCCCCCCCch-hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC
Q 038776          137 GEIPASISNCSNLLVVSLALNHLAGKIPS-EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF  215 (281)
Q Consensus       137 ~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  215 (281)
                      ...-+.+.++++|++|++++|++. .+|+ .+.++..|++|++++|+++ .+|..+..++.|++|...+|++. .+| .+
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             ccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            766677889999999999999998 5665 4889999999999999998 88999999999999999999998 788 78


Q ss_pred             CCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          216 GGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       216 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      ..++.|+.+|++.|+++...-...-..++|++||+++|.-. ......+..+.++...++.-|
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence            88999999999999998543333334489999999999632 233333333566666665544

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=7.1e-15  Score=135.21  Aligned_cols=151  Identities=31%  Similarity=0.513  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc-----cccceeeCCC--C--CcEEEEEcCCCCcceecCccCcCCC
Q 038776           29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFC-----EWYGVTCSPR--H--QRVTILDLQNLKLAGTLPPHIGNLS   99 (281)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~~~~~--~--~~l~~l~l~~~~l~~~~~~~~~~l~   99 (281)
                      .....|..+|..++..+.. +.  ..+|..  ++|     .|.|+.|...  .  ..++.|+++++.+.+.+|..+..++
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-PL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-cc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            4455678899999988742 21  136864  344     7999999532  1  2488899999999999998899999


Q ss_pred             CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCC-CCCCEEeC
Q 038776          100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSL-SKLQFLST  178 (281)
Q Consensus       100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l  178 (281)
                      +|+.|++++|.+.+.+|..++.+++|+.|++++|.++|.+|..++++++|++|++++|.+.+.+|..+... .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999998899889999999999999999998899989999999999999999998888887653 45667777


Q ss_pred             cCCccc
Q 038776          179 TANNLT  184 (281)
Q Consensus       179 ~~n~~~  184 (281)
                      .+|...
T Consensus       523 ~~N~~l  528 (623)
T PLN03150        523 TDNAGL  528 (623)
T ss_pred             cCCccc
Confidence            777544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.58  E-value=2.8e-17  Score=136.39  Aligned_cols=204  Identities=25%  Similarity=0.279  Sum_probs=148.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCC-CCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRN-NSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ++++.||+++|.++..-|+.|.++..+..|-+.+ |.++..--+.|+++..++.|.+.-|.+.-.....+..+++|..|.
T Consensus        91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs  170 (498)
T KOG4237|consen   91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS  170 (498)
T ss_pred             hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc
Confidence            7899999999999988899999999988877776 888843334777777777777776666544445566666666666


Q ss_pred             cccCCCCCCCch-hcCCCCCCCEEeCcCCc--------------------------------------------------
Q 038776          154 LALNHLAGKIPS-EFGSLSKLQFLSTTANN--------------------------------------------------  182 (281)
Q Consensus       154 l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~--------------------------------------------------  182 (281)
                      +..|.+. .++. .+..+..++.+.+..|.                                                  
T Consensus       171 lyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e  249 (498)
T KOG4237|consen  171 LYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE  249 (498)
T ss_pred             ccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence            6666655 2222 34444444444443333                                                  


Q ss_pred             -----------ccccCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEc
Q 038776          183 -----------LTGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV  250 (281)
Q Consensus       183 -----------~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  250 (281)
                                 ..+..| ..+..+++|+.|++++|.+++.-+.+|.++.++++|+|..|++...-...|.++.+|++|+|
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeee
Confidence                       111222 23566788999999999998888888999999999999999887555667888899999999


Q ss_pred             ccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       251 ~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+|+|+.-.|. .++.+..|.+|.+-.|+|
T Consensus       330 ~~N~it~~~~~-aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  330 YDNQITTVAPG-AFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cCCeeEEEecc-cccccceeeeeehccCcc
Confidence            99999854444 445588899999988886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=3.6e-14  Score=131.26  Aligned_cols=53  Identities=25%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCccc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD  136 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  136 (281)
                      +++.|++.+|.++ .+|..   .++|++|++++|.++ .+|..   .++|+.|++++|.+.
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence            4566666666665 34432   356677777777666 34432   234444544444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.56  E-value=5.9e-17  Score=140.08  Aligned_cols=178  Identities=28%  Similarity=0.473  Sum_probs=141.1

Q ss_pred             EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      +..|++.|.+. .+|..+..+-.|+.+.+..|.+. .+|.++.++..|++|+|+.|+++ .+|..++.++ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34567777776 66766766777788888888777 77888888888888888888888 7888887776 888888888


Q ss_pred             CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCc
Q 038776          158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  237 (281)
                      +++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|+++.|++. .+|..+..+ .|..||+++|++. .+|-
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence            887 77888888888888888888887 67888888888888888888887 666666654 4788888888887 6788


Q ss_pred             cccCCCCCCEEEcccCcccccCChhhhh
Q 038776          238 LIFNISSIQTFDVGSNYIEGEMPLDLGT  265 (281)
Q Consensus       238 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~  265 (281)
                      .|.++++|++|.|.+|++. ..|..++.
T Consensus       229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             hhhhhhhheeeeeccCCCC-CChHHHHh
Confidence            8888888888888888887 56666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.53  E-value=2.7e-16  Score=136.05  Aligned_cols=175  Identities=28%  Similarity=0.489  Sum_probs=159.5

Q ss_pred             CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776           97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  176 (281)
                      .+......|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++++|+.|+++ .+|..++.++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3455577899999998 88998999999999999999998 89999999999999999999998 8899999888 9999


Q ss_pred             eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      .+++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            99999998 78999998899999999999998 88999999999999999999998 688888865 4899999999998


Q ss_pred             ccCChhhhhCCCCCcEEEcccccCC
Q 038776          257 GEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       .+|..+.+ +..|++|-|.+|+++
T Consensus       225 -~iPv~fr~-m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 -YLPVDFRK-MRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ecchhhhh-hhhheeeeeccCCCC
Confidence             89999987 999999999999974

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.47  E-value=5.6e-14  Score=123.29  Aligned_cols=177  Identities=36%  Similarity=0.585  Sum_probs=114.7

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCC-cccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLR-RLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL  173 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  173 (281)
                      +..++.++.|++.+|.+. .++.....++ +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|...+..++|
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            334456777777777776 5555555553 7777777777776 55556667777777777777776 555555566777


Q ss_pred             CEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776          174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN  253 (281)
Q Consensus       174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  253 (281)
                      +.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. .++..++.++++++|++++|
T Consensus       189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence            77777777776 55554445556777777777533 44555566666666666667665 33566666666777777777


Q ss_pred             cccccCChhhhhCCCCCcEEEcccccC
Q 038776          254 YIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       254 ~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .++ .++. +.. +.+++.|++++|.+
T Consensus       266 ~i~-~i~~-~~~-~~~l~~L~~s~n~~  289 (394)
T COG4886         266 QIS-SISS-LGS-LTNLRELDLSGNSL  289 (394)
T ss_pred             ccc-cccc-ccc-cCccCEEeccCccc
Confidence            776 4443 333 67777777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=4.5e-13  Score=117.59  Aligned_cols=179  Identities=34%  Similarity=0.567  Sum_probs=151.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCC-CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLS-FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ..++.+++.++.+. .++....... +|+.|+++.|.+. .+|..+..+++|+.|+++.|.+. .+|...+..+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            45888999999888 5666666674 9999999999998 67777889999999999999999 7787766899999999


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      +++|++. .+|........|+.+.+++|... ..+..+..+.++..+.+..|++. .++..++.+++++.|++++|.++.
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence            9999998 78877777778999999999654 55677888899999999999886 447788889999999999999984


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCCh
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEMPL  261 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~  261 (281)
                       ++. ++...+++.|++++|.+....|.
T Consensus       270 -i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         270 -ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -ccc-ccccCccCEEeccCccccccchh
Confidence             444 88899999999999988855544

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=1.7e-12  Score=119.52  Aligned_cols=107  Identities=29%  Similarity=0.530  Sum_probs=65.4

Q ss_pred             CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEccc
Q 038776          173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGS  252 (281)
Q Consensus       173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  252 (281)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|++++.+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcccccCChhhhhCCCCCcEEEccccc
Q 038776          253 NYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       253 n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      |.++|.+|..+...+.++..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            666666666554433445555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.25  E-value=1.9e-12  Score=122.17  Aligned_cols=189  Identities=21%  Similarity=0.290  Sum_probs=121.0

Q ss_pred             HHHHHHHHhhcccccCCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCC---Cc-cccceeeCCCCCcEEEEEcCCCC--
Q 038776           13 FCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH---FC-EWYGVTCSPRHQRVTILDLQNLK--   86 (281)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~---~c-~~~g~~~~~~~~~l~~l~l~~~~--   86 (281)
                      ..+.|||+++++|.+++....+...-.-+..............|...+.   .+ ......+....+.+++|-+..+.  
T Consensus       479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~  558 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW  558 (889)
T ss_pred             eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence            4578999999999888873322111000110000000112233432221   11 11122223333568888888876  


Q ss_pred             cceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchh
Q 038776           87 LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE  166 (281)
Q Consensus        87 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~  166 (281)
                      +.......|..++.|++||+++|.-.+.+|..++.+.+|++|+++++.+. .+|..+.++..|.+|++..+.....+|..
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence            44333344778999999999998777789999999999999999999998 89999999999999999988876666666


Q ss_pred             cCCCCCCCEEeCcCCccc--ccCCccccCCCCCCeEEc
Q 038776          167 FGSLSKLQFLSTTANNLT--GNIPSSLGNLSSLRGLSL  202 (281)
Q Consensus       167 ~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l  202 (281)
                      ...+.+|++|.+......  ...-..+..+.+|+.+..
T Consensus       638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            777999999998654421  122233344444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.9e-12  Score=108.14  Aligned_cols=204  Identities=23%  Similarity=0.233  Sum_probs=130.9

Q ss_pred             CcEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCccC--CchhccCCCcccEeeccCCcccccCCc-cCcCCCCCc
Q 038776           75 QRVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLL  150 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~  150 (281)
                      ..++.+.+.+..+....- .....+++++.||++.|-+...  +-.....+|+|+.|+++.|.+.-.... .-..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            456667777766552111 3456788888888888876632  333455788888888888877521111 123567888


Q ss_pred             EEEcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc--ccCCCCCCCCeEecc
Q 038776          151 VVSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP--DTFGGLKNLVNLSLV  227 (281)
Q Consensus       151 ~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~  227 (281)
                      .|.++.|.++..-. .....+|+|+.|++..|...........-+..|++|+|++|.+- ..+  ...+.++.|+.|.++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence            88888888874322 22456788888888888532232233344677888888888876 333  345677888888888


Q ss_pred             cCcCcCC-CCcc-----ccCCCCCCEEEcccCcccccCC--hhhhhCCCCCcEEEcccccCC
Q 038776          228 VNNLSGT-IPPL-----IFNISSIQTFDVGSNYIEGEMP--LDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       228 ~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+.+... .|+.     ...+++|++|++..|++. +.+  ..+.. +++|+.|.+-.|.|+
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~-l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT-LENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc-cchhhhhhccccccc
Confidence            8877632 2322     345678888888888885 222  12333 677777777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3.1e-11  Score=92.62  Aligned_cols=107  Identities=27%  Similarity=0.348  Sum_probs=23.5

Q ss_pred             CCCcccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-cCCCCCC
Q 038776          121 HLRRLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSLR  198 (281)
Q Consensus       121 ~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~  198 (281)
                      +..+++.|+|.+|.++ .+ +.++ .+.+|+.|++++|.+. .+ +.+..++.|+.|++++|.++. +...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            3345566666666655 22 2333 3455666666666555 22 234445555555555555542 22222 2345555


Q ss_pred             eEEcccCCCcccc-cccCCCCCCCCeEecccCcCc
Q 038776          199 GLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       199 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      +|++++|++...- -..+..+++|+.|++.+|.++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5555555554211 122333444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2.7e-12  Score=108.31  Aligned_cols=183  Identities=23%  Similarity=0.190  Sum_probs=134.3

Q ss_pred             cCCCCCCEEECCCCCCccCCc--hhccCCCcccEeeccCCccccc--CCccCcCCCCCcEEEcccCCCCCCCchh-cCCC
Q 038776           96 GNLSFLQKLDLRNNSFTNEIP--PQIGHLRRLQILYLQINSFDGE--IPASISNCSNLLVVSLALNHLAGKIPSE-FGSL  170 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l  170 (281)
                      .+++.|+.+.+.+..+. ..+  .....+++++.||++.|-+...  +......+|+|+.|+++.|++....... -..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45778999999998876 222  3566899999999999977632  2334568999999999999987322221 2367


Q ss_pred             CCCCEEeCcCCcccccC-CccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC--ccccCCCCCCE
Q 038776          171 SKLQFLSTTANNLTGNI-PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PLIFNISSIQT  247 (281)
Q Consensus       171 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~  247 (281)
                      +.++.|.++.|.++... -..+..+++|+.|++..|..-..-......+..|++|+|++|++.. .+  ...+.+++|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            88999999999997432 2344568999999999996322323334457899999999998873 33  46678899999


Q ss_pred             EEcccCccccc-CCh----hhhhCCCCCcEEEcccccC
Q 038776          248 FDVGSNYIEGE-MPL----DLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       248 L~l~~n~l~~~-~p~----~~~~~~~~L~~L~l~~N~l  280 (281)
                      |.++.+.+... .|.    +....+++|++|+++.|++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            99999988742 111    1234589999999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=1.1e-11  Score=102.04  Aligned_cols=185  Identities=21%  Similarity=0.251  Sum_probs=127.9

Q ss_pred             CcCCCCCCEEECCCCCCccCCch----hccCCCcccEeeccCCccccc-------------CCccCcCCCCCcEEEcccC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPP----QIGHLRRLQILYLQINSFDGE-------------IPASISNCSNLLVVSLALN  157 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~-------------~p~~l~~l~~L~~L~l~~n  157 (281)
                      +...++|++++||.|.+...-+.    .+..+..|++|.|.+|.+...             ......+-++|++++.++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            44567889999999887643333    345678888899988877521             1122345578999999988


Q ss_pred             CCCCCC----chhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCcc----cccccCCCCCCCCeEe
Q 038776          158 HLAGKI----PSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYG----SIPDTFGGLKNLVNLS  225 (281)
Q Consensus       158 ~~~~~~----p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~  225 (281)
                      ++....    ...+...+.|+.+.+..|.+...    +...+.++++|+.|++++|.++.    .+...+..+++|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            877332    23456678889999888877522    22456778999999999998863    2445566778899999


Q ss_pred             cccCcCcCCCC----ccc-cCCCCCCEEEcccCcccccCC----hhhhhCCCCCcEEEcccccC
Q 038776          226 LVVNNLSGTIP----PLI-FNISSIQTFDVGSNYIEGEMP----LDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       226 l~~n~~~~~~~----~~l-~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++|.+...-.    ..+ ...++|+.|.+.+|.++...-    ..+.. .|.|..|+|++|.+
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence            99988864322    222 235789999999998874322    22333 78899999999986

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=6.9e-11  Score=90.72  Aligned_cols=127  Identities=25%  Similarity=0.319  Sum_probs=51.2

Q ss_pred             CcCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC-CCCCC
Q 038776          143 ISNCSNLLVVSLALNHLAGKIPSEFG-SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKN  220 (281)
Q Consensus       143 l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~  220 (281)
                      +.+..++++|++++|.+. .+ +.++ .+.+|+.|++++|.++..  ..+..+++|++|++++|.++ .+...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            445667899999999997 33 3565 588999999999999843  35778899999999999998 444333 35799


Q ss_pred             CCeEecccCcCcCC-CCccccCCCCCCEEEcccCcccccCCh---hhhhCCCCCcEEEc
Q 038776          221 LVNLSLVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMPL---DLGTTLPNLRIFSI  275 (281)
Q Consensus       221 L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~l  275 (281)
                      |+.|++++|++... --..+..+++|+.|++.+|+++.. +.   .+...+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            99999999999742 125677889999999999999843 32   12234999999874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=5.6e-12  Score=102.01  Aligned_cols=128  Identities=27%  Similarity=0.285  Sum_probs=56.0

Q ss_pred             CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776           99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  178 (281)
                      +.|+.+|+++|.++ .+..++.-.|.++.|+++.|.+. .+. .+..+++|+.||+++|.++ .+..+-.++.+++.|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34455555555544 33333444455555555555444 221 1444455555555555444 22222234444445555


Q ss_pred             cCCcccccCCccccCCCCCCeEEcccCCCcccc-cccCCCCCCCCeEecccCcCc
Q 038776          179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      ++|.+..  ...+..+.+|..|++++|++...- -..+++++.|+.+.+.+|.+.
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5544431  133344444555555555443211 122444444444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=7.6e-12  Score=101.24  Aligned_cols=127  Identities=26%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEec
Q 038776          147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL  226 (281)
Q Consensus       147 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  226 (281)
                      .-|+++|+++|.++ .+.++..-.|.++.|+++.|.+...  ..+..+++|+.|++++|.++ .+..+-..+-++++|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            44556666666655 4444455556666666666665422  22555566666666666554 33334444555555666


Q ss_pred             ccCcCcCCCCccccCCCCCCEEEcccCccccc-CChhhhhCCCCCcEEEcccccC
Q 038776          227 VVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE-MPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       227 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|.+.. + .-++.+=+|..||+++|+|... -...+++ +|.|+.+.+.+|++
T Consensus       360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence            6655541 1 2233344455566666655411 1112333 56666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=5.7e-11  Score=97.79  Aligned_cols=207  Identities=20%  Similarity=0.309  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCC---CCccCCch-------hccCCCcccEeeccCCcccccCC
Q 038776           75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNN---SFTNEIPP-------QIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n---~~~~~~~~-------~~~~l~~L~~L~l~~n~~~~~~p  140 (281)
                      ..++.+++++|.+...    +...+.+.+.|+..+++.-   +....+|.       ++..+++|++|+||.|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4567777777776532    3344556667777777652   12223333       33456677788888777654333


Q ss_pred             cc----CcCCCCCcEEEcccCCCCCCCc-------------hhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCe
Q 038776          141 AS----ISNCSNLLVVSLALNHLAGKIP-------------SEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRG  199 (281)
Q Consensus       141 ~~----l~~l~~L~~L~l~~n~~~~~~p-------------~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~  199 (281)
                      ..    +.++..|++|.+.+|.+.....             ...++-+.|+.+...+|.+...    +...+...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            32    3456777777777777652111             1133456777777777776532    1233445567777


Q ss_pred             EEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhh----hCC
Q 038776          200 LSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLG----TTL  267 (281)
Q Consensus       200 L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~----~~~  267 (281)
                      +.+..|.+...    +...+..+++|+.|||.+|-++..    +...+..+++|+.|++++|.+.......+.    ...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            77777776421    233456777788888877776521    334555667777777777777654444332    236


Q ss_pred             CCCcEEEcccccCC
Q 038776          268 PNLRIFSITGNQFT  281 (281)
Q Consensus       268 ~~L~~L~l~~N~l~  281 (281)
                      |+|+.+.+.+|.++
T Consensus       270 p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  270 PSLEVLELAGNEIT  283 (382)
T ss_pred             CCCceeccCcchhH
Confidence            77777777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.5e-10  Score=71.66  Aligned_cols=61  Identities=31%  Similarity=0.524  Sum_probs=42.1

Q ss_pred             CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          219 KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|+.|++++|+++...+..+..+++|++|++++|.+. .++...+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            45677777777777555566777777777777777776 44544555577777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.6e-09  Score=68.52  Aligned_cols=59  Identities=34%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCC
Q 038776          100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH  158 (281)
Q Consensus       100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~  158 (281)
                      +|++|++++|.+....+..|..+++|++|++++|.+....|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555553333445555555555555555553334445555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.6e-09  Score=102.58  Aligned_cols=128  Identities=29%  Similarity=0.334  Sum_probs=99.7

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC--CccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS--FTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      .++...+-++.+. .++... ..+.|++|-+..|.  +.......|..++.|++||+++|.-.+.+|..++.+-+||+|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4455666666554 333333 33478899888886  4433444578899999999999877779999999999999999


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG  206 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  206 (281)
                      ++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999998 899999999999999999887665566666779999999987664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=3.2e-10  Score=100.12  Aligned_cols=108  Identities=28%  Similarity=0.349  Sum_probs=54.4

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +..++.++.+++..|.+. .+...+..+++|++|++++|.++. +. .+..++.|+.|++.+|.+. . ...+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~-~~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-D-ISGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-h-ccCCccchhhh
Confidence            444555566666666555 233224455566666666665552 21 2344455666666666554 1 12233455566


Q ss_pred             EEeCcCCcccccCC-ccccCCCCCCeEEcccCCCc
Q 038776          175 FLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       175 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~  208 (281)
                      .+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            66666665553222 1 344555555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.68  E-value=3.9e-10  Score=101.14  Aligned_cols=179  Identities=26%  Similarity=0.310  Sum_probs=113.4

Q ss_pred             CccCcCCCCCCEEECCCCCCccCCchhccCC-CcccEeeccCCccc---c---cCCccCcC---CCCCcEEEcccCCCCC
Q 038776           92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHL-RRLQILYLQINSFD---G---EIPASISN---CSNLLVVSLALNHLAG  161 (281)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~---~---~~p~~l~~---l~~L~~L~l~~n~~~~  161 (281)
                      |-.+..++.||+|.+.++.+..  ...+..+ .+|++|.-.+ .+.   .   .-...+++   .-.|.+.++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            4456777889999998888762  1111111 1233332221 111   0   00111221   235677788888776 


Q ss_pred             CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccC
Q 038776          162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN  241 (281)
Q Consensus       162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  241 (281)
                      ....++.-++.++.|+++.|+++..  ..+..++.|++||+++|.++ .+|..-..-..|+.|.+++|.++. + ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHh
Confidence            5556677778888899999888754  36778888999999999887 666543333358888888888872 2 34567


Q ss_pred             CCCCCEEEcccCcccccCChh-hhhCCCCCcEEEcccccC
Q 038776          242 ISSIQTFDVGSNYIEGEMPLD-LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       242 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~N~l  280 (281)
                      +.+|+.||+++|-+.+----. ++. +..|+.|+|.||++
T Consensus       253 LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCcc
Confidence            788888899988776422211 233 66788888888875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=3.7e-09  Score=93.35  Aligned_cols=172  Identities=26%  Similarity=0.280  Sum_probs=111.9

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ...++.+++.+|.+... ...+..+.+|++|++++|.+.. +. .+..++.|+.|++++|.++ .+ ..+..++.|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence            47788999999999843 3337788999999999999983 32 3667888999999999997 33 3455689999999


Q ss_pred             cccCCCCCCCchh-cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCC--CCCeEecccCc
Q 038776          154 LALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK--NLVNLSLVVNN  230 (281)
Q Consensus       154 l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~  230 (281)
                      +++|.+...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+  +..+.  .|+.+++.+|.
T Consensus       169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  169 LSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR  243 (414)
T ss_pred             CCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence            99999984333 2 57788899999999887522  223333444444555555542111  11111  25566666665


Q ss_pred             CcCCCCccccCCCCCCEEEcccCccc
Q 038776          231 LSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      +. ..+..+..+..+..|++.+|.+.
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cc-cccccccccccccccchhhcccc
Confidence            55 22233444455555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.57  E-value=1.6e-08  Score=81.09  Aligned_cols=204  Identities=19%  Similarity=0.189  Sum_probs=109.7

Q ss_pred             CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCCCC---ccCCc-------hhccCCCcccEeeccCCcccccCC
Q 038776           75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSF---TNEIP-------PQIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~---~~~~~-------~~~~~l~~L~~L~l~~n~~~~~~p  140 (281)
                      ..++.+++++|.+...    +...+.+-++|+..+++.-..   ...++       +++.++|+|+..+|+.|-+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4456677777766532    333455556666666664321   11222       334566777777777776665555


Q ss_pred             cc----CcCCCCCcEEEcccCCCCCCCchh-------------cCCCCCCCEEeCcCCcccccCCcc-----ccCCCCCC
Q 038776          141 AS----ISNCSNLLVVSLALNHLAGKIPSE-------------FGSLSKLQFLSTTANNLTGNIPSS-----LGNLSSLR  198 (281)
Q Consensus       141 ~~----l~~l~~L~~L~l~~n~~~~~~p~~-------------~~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~~L~  198 (281)
                      +.    +++-..|.+|.+++|.+.......             ...-|.|+.+....|++. ..+..     +..-..|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence            43    345566777777777655211111             224466777777777664 22211     11114566


Q ss_pred             eEEcccCCCcccc-----cccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhhhC---
Q 038776          199 GLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTT---  266 (281)
Q Consensus       199 ~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~---  266 (281)
                      ++.+..|.+....     -..+..+.+|+.||+++|-++-.    +...+..++.|+.|.+.+|-++.....++.+.   
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            7777777665221     01123456777777777766521    22344455666777777766655544444332   


Q ss_pred             --CCCCcEEEccccc
Q 038776          267 --LPNLRIFSITGNQ  279 (281)
Q Consensus       267 --~~~L~~L~l~~N~  279 (281)
                        .|+|..|...+|.
T Consensus       269 ~~~p~l~~L~~~Yne  283 (388)
T COG5238         269 KFVPNLMPLPGDYNE  283 (388)
T ss_pred             hcCCCccccccchhh
Confidence              4566666655553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.4e-08  Score=81.06  Aligned_cols=87  Identities=28%  Similarity=0.313  Sum_probs=61.8

Q ss_pred             CCCCCCEEECCCCCCcc--CCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCc-hhcCCCCCC
Q 038776           97 NLSFLQKLDLRNNSFTN--EIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIP-SEFGSLSKL  173 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L  173 (281)
                      ....++.+|+.+|.++.  .+-..+.++|.|++|+++.|.+...+...-..+.+|++|.+.+..+..... ..+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35678899999998874  344456789999999999998873332221356788999998887764322 345677888


Q ss_pred             CEEeCcCCcc
Q 038776          174 QFLSTTANNL  183 (281)
Q Consensus       174 ~~L~l~~n~~  183 (281)
                      +.|.++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            8888888854

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=9.5e-09  Score=74.10  Aligned_cols=83  Identities=24%  Similarity=0.358  Sum_probs=39.6

Q ss_pred             CCCCCEEECCCCCCccCCchhc-cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776           98 LSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        98 l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  176 (281)
                      ..+|+..++++|.+. .+|..| .+++.++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            344455555555555 333322 23345555555555555 44555555555555555555544 444444444444444


Q ss_pred             eCcCCcc
Q 038776          177 STTANNL  183 (281)
Q Consensus       177 ~l~~n~~  183 (281)
                      +..+|..
T Consensus       129 ds~~na~  135 (177)
T KOG4579|consen  129 DSPENAR  135 (177)
T ss_pred             cCCCCcc
Confidence            4444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.9e-09  Score=86.32  Aligned_cols=176  Identities=22%  Similarity=0.242  Sum_probs=86.6

Q ss_pred             CCEEECCCCCCcc-CCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC-CCCCCCc-hhcCCCCCCCEEe
Q 038776          101 LQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN-HLAGKIP-SEFGSLSKLQFLS  177 (281)
Q Consensus       101 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~~p-~~~~~l~~L~~L~  177 (281)
                      +++||++...++. .+...+..+.+|+.|.+.++++...+...+..-.+|+.|+++.+ .++.... -.+.+++.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555555442 12223344555555555555555444445555555666665553 2221111 1244555566666


Q ss_pred             CcCCcccccCCc-cccCC-CCCCeEEcccCCCc--c-cccccCCCCCCCCeEecccCcC-cCCCCccccCCCCCCEEEcc
Q 038776          178 TTANNLTGNIPS-SLGNL-SSLRGLSLSRNGFY--G-SIPDTFGGLKNLVNLSLVVNNL-SGTIPPLIFNISSIQTFDVG  251 (281)
Q Consensus       178 l~~n~~~~~~~~-~l~~l-~~L~~L~l~~n~~~--~-~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~L~l~  251 (281)
                      ++-|.+...... .+.+. .+|+.|+++|+...  . .+..-..++++|.+||+++|.. +...-..+..++-|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            655544321111 11111 34555555555321  0 1111123567777777777643 32233455566777777777


Q ss_pred             cCcccccCChhh--hhCCCCCcEEEcccc
Q 038776          252 SNYIEGEMPLDL--GTTLPNLRIFSITGN  278 (281)
Q Consensus       252 ~n~l~~~~p~~~--~~~~~~L~~L~l~~N  278 (281)
                      .|..  .+|..+  ++..|.|.+||+.++
T Consensus       347 RCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcC--CChHHeeeeccCcceEEEEeccc
Confidence            7753  234332  223677777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=5.1e-09  Score=94.16  Aligned_cols=126  Identities=27%  Similarity=0.300  Sum_probs=82.9

Q ss_pred             CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchh-cCCCCCCCEEeC
Q 038776          100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLST  178 (281)
Q Consensus       100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l  178 (281)
                      .|...++++|.+. .+..++.-++.|+.|+|+.|+++. . ..+..+++|++|||++|.+. .+|.. ...+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4555666677666 455566677788888888888763 2 26677788888888888877 45542 22333 778888


Q ss_pred             cCCcccccCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCc
Q 038776          179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  232 (281)
                      ++|.++.  ...+.++++|+.||+++|-+.+.-. ..+..+..|+.|+|.+|.+.
T Consensus       240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8887762  2456677788888888887654211 12334567777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1.4e-06  Score=50.79  Aligned_cols=37  Identities=32%  Similarity=0.599  Sum_probs=26.8

Q ss_pred             CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          219 KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36778888888887 56666778888888888888777

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.1e-08  Score=83.12  Aligned_cols=156  Identities=21%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccC--CccCcCCCCCcEEEcccCCCCCCCchh-cC-CCC
Q 038776           96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI--PASISNCSNLLVVSLALNHLAGKIPSE-FG-SLS  171 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~-~l~  171 (281)
                      ..+..|+.|.+.++++.+.+...+++-.+|+.|+++.+.--...  ---+.+++.|..|+++++......... +. --+
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            34455555555555555444445555555555555544211011  011334555555555555443211111 11 113


Q ss_pred             CCCEEeCcCCccc---ccCCccccCCCCCCeEEcccCC-CcccccccCCCCCCCCeEecccCcCcCCCCc---cccCCCC
Q 038776          172 KLQFLSTTANNLT---GNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP---LIFNISS  244 (281)
Q Consensus       172 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~l~~~~~  244 (281)
                      +|..|+++++.-.   .++..-...+++|.+||+++|. ++...-..+..++.|+++.++.|..-  +|.   .+...+.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~ps  364 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPS  364 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcc
Confidence            4455555544321   1111122344555555555543 22222223334555555555554331  221   2334455


Q ss_pred             CCEEEcccC
Q 038776          245 IQTFDVGSN  253 (281)
Q Consensus       245 L~~L~l~~n  253 (281)
                      |.+|++.++
T Consensus       365 l~yLdv~g~  373 (419)
T KOG2120|consen  365 LVYLDVFGC  373 (419)
T ss_pred             eEEEEeccc
Confidence            555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=2.9e-07  Score=74.92  Aligned_cols=184  Identities=15%  Similarity=0.126  Sum_probs=106.8

Q ss_pred             CcEEEEEcCCCCcce--ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-cCCccCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAG--TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-EIPASISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~  151 (281)
                      .+++.+|+.+|.+++  .+...+.++++|+.|++++|++...+-..-..+++|++|.|.+..+.- .....+..+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            578889999998873  344556789999999999999874332211367789999999887642 23445678899999


Q ss_pred             EEcccCCCCCCC--chhcCC-CCCCCEEeCcCCcccc--cCCccccCCCCCCeEEcccCCCccc-ccccCCCCCCCCeEe
Q 038776          152 VSLALNHLAGKI--PSEFGS-LSKLQFLSTTANNLTG--NIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLS  225 (281)
Q Consensus       152 L~l~~n~~~~~~--p~~~~~-l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~  225 (281)
                      |+++.|.+.-..  ...... -+.++++....|...-  ..-.....++++..+-+..|++... .......++.+.-|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            999988443110  001111 1234444444443210  0001112245566666666655421 122233445555666


Q ss_pred             cccCcCcC-CCCccccCCCCCCEEEcccCccccc
Q 038776          226 LVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       226 l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~  258 (281)
                      ++.+++.. .-.+.+..++.|..|.+.+|++.+.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            66666642 1224556667777777777766643

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.18  E-value=3.4e-06  Score=48.98  Aligned_cols=40  Identities=55%  Similarity=1.002  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCCC--CCCccccceeeC
Q 038776           32 ETDRAALLEFKSKITNDALGVLGSWNDS--IHFCEWYGVTCS   71 (281)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~~~   71 (281)
                      +.|+++|++||+.+..++...+.+|..+  .++|.|.|++|.
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4688999999999986677789999987  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=1.7e-07  Score=67.79  Aligned_cols=82  Identities=23%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             cccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEc
Q 038776          124 RLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL  202 (281)
Q Consensus       124 ~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  202 (281)
                      +|...++++|.+. .+|..|. ..+.++.+++++|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3444455555544 3444332 2234555555555554 44444555555555555555554 33444444444445554


Q ss_pred             ccCCCc
Q 038776          203 SRNGFY  208 (281)
Q Consensus       203 ~~n~~~  208 (281)
                      .+|.+.
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=3e-06  Score=49.39  Aligned_cols=36  Identities=36%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776          196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       196 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      +|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.07  E-value=2e-05  Score=68.21  Aligned_cols=132  Identities=18%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCC-cccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN-SFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ..++.|++++|.+. .+|. +.  .+|+.|.++++.-...+|..+  .++|++|++++| .+. .+|.      +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            45678888888766 4452 22  358888888754434566544  357888888887 443 4553      466777


Q ss_pred             cccCCCC--CCCchhcCCCCCCCEEeCcCCccc--ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccC
Q 038776          154 LALNHLA--GKIPSEFGSLSKLQFLSTTANNLT--GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN  229 (281)
Q Consensus       154 l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  229 (281)
                      +..+...  +.+|.      +|+.|.+.++...  ...|..  -.++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            7655432  13333      4556666432211  011111  1257888888888765 3443332  57888888765


Q ss_pred             c
Q 038776          230 N  230 (281)
Q Consensus       230 ~  230 (281)
                      .
T Consensus       188 ~  188 (426)
T PRK15386        188 Q  188 (426)
T ss_pred             c
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=1.7e-06  Score=80.41  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=13.9

Q ss_pred             CCCCCEEEcccCcccccCChhhhhCCCCCc
Q 038776          242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLR  271 (281)
Q Consensus       242 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~  271 (281)
                      +|+|+.||+++..+.+.+-+.+...-|+|+
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            445555555555555444443333333333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=3.4e-06  Score=78.45  Aligned_cols=133  Identities=20%  Similarity=0.332  Sum_probs=87.5

Q ss_pred             CCCcEEEcccCCCC-CCCchhcC-CCCCCCEEeCcCCccccc-CCccccCCCCCCeEEcccCCCcccccccCCCCCCCCe
Q 038776          147 SNLLVVSLALNHLA-GKIPSEFG-SLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN  223 (281)
Q Consensus       147 ~~L~~L~l~~n~~~-~~~p~~~~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  223 (281)
                      .+|++|++++...- ...|..++ .+|+|+.|.+++-.+... +-....++++|..||+++++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46777777764332 22333333 568888888877665422 223345678888888888888633  55778888888


Q ss_pred             EecccCcCcC-CCCccccCCCCCCEEEcccCccccc--CCh---hhhhCCCCCcEEEcccccCC
Q 038776          224 LSLVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGE--MPL---DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       224 L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~--~p~---~~~~~~~~L~~L~l~~N~l~  281 (281)
                      |.+.+=.+.. ..-..+.++++|+.||++.......  +..   +....+|+|+.||.|++.++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8887776653 2224667889999999998754421  111   12334899999999998763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=1.7e-06  Score=69.68  Aligned_cols=187  Identities=24%  Similarity=0.184  Sum_probs=127.3

Q ss_pred             ccCcCCCCCCEEECCCCCCccCCch----hccCCCcccEeeccCCccccc----CC---------ccCcCCCCCcEEEcc
Q 038776           93 PHIGNLSFLQKLDLRNNSFTNEIPP----QIGHLRRLQILYLQINSFDGE----IP---------ASISNCSNLLVVSLA  155 (281)
Q Consensus        93 ~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~----~p---------~~l~~l~~L~~L~l~  155 (281)
                      +.+.++++|+..++|.|.+....|.    .+++-..|.+|.+++|.+...    +.         ....+-|.|++.+..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            3466889999999999988755553    456778899999999977521    11         123456889999999


Q ss_pred             cCCCCCCCchh-----cCCCCCCCEEeCcCCcccccCC-----ccccCCCCCCeEEcccCCCccc----ccccCCCCCCC
Q 038776          156 LNHLAGKIPSE-----FGSLSKLQFLSTTANNLTGNIP-----SSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNL  221 (281)
Q Consensus       156 ~n~~~~~~p~~-----~~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L  221 (281)
                      .|++. ..+..     +..-.+|+.+.+..|.+.-...     ..+..+.+|+.|++++|.++-.    +...+..++.|
T Consensus       166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            99887 33322     3333688999999998762211     1234668999999999988622    33455667889


Q ss_pred             CeEecccCcCcCCCCcc----cc--CCCCCCEEEcccCcccccCChh------hhhCCCCCcEEEcccccC
Q 038776          222 VNLSLVVNNLSGTIPPL----IF--NISSIQTFDVGSNYIEGEMPLD------LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       222 ~~L~l~~n~~~~~~~~~----l~--~~~~L~~L~l~~n~l~~~~p~~------~~~~~~~L~~L~l~~N~l  280 (281)
                      +.|.+.+|-++..-...    +.  ..++|..|..++|.+.+.+...      ....+|-|..|.+.+|+|
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            99999999876432221    11  2478888989998766533322      223467777777777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=5.6e-05  Score=65.53  Aligned_cols=137  Identities=17%  Similarity=0.175  Sum_probs=88.5

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +..+.+++.|++++|.+. .+|.   -..+|+.|.+++|.-...+|..+  .++|++|++++|.....+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            455688999999999887 6662   23469999998865444667654  36899999999833335554      467


Q ss_pred             EEeCcCCccc--ccCCccccCCCCCCeEEcccCCC-cc-cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEc
Q 038776          175 FLSTTANNLT--GNIPSSLGNLSSLRGLSLSRNGF-YG-SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV  250 (281)
Q Consensus       175 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  250 (281)
                      .|++..+...  +.+|      ++|+.|.+.++.. .. .+|..  -.++|+.|++++|... .+|..+.  .+|++|++
T Consensus       116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            7777665443  1233      3566777654321 11 11211  1268999999998866 3454433  57999999


Q ss_pred             ccCc
Q 038776          251 GSNY  254 (281)
Q Consensus       251 ~~n~  254 (281)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=3.4e-05  Score=59.61  Aligned_cols=103  Identities=25%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCC-chhcCCCCCCCEEeC
Q 038776          100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKI-PSEFGSLSKLQFLST  178 (281)
Q Consensus       100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l  178 (281)
                      ....+|+++|.+.  -.+.|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+.... -..+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4466777777765  2233566777777777777777444443344567777777777766211 123556667777777


Q ss_pred             cCCccccc---CCccccCCCCCCeEEccc
Q 038776          179 TANNLTGN---IPSSLGNLSSLRGLSLSR  204 (281)
Q Consensus       179 ~~n~~~~~---~~~~l~~l~~L~~L~l~~  204 (281)
                      -+|.....   --..+..+++|+.||.+.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            66665421   012244556666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.61  E-value=0.00013  Score=56.47  Aligned_cols=105  Identities=24%  Similarity=0.226  Sum_probs=76.1

Q ss_pred             CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC-CccccCCCCCCEE
Q 038776          170 LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI-PPLIFNISSIQTF  248 (281)
Q Consensus       170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L  248 (281)
                      ......+++++|.+..  ...+..++.|.+|.+..|+++..-|.--.-+++|..|.+.+|.+...- -..+..+++|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3467888999998852  245667899999999999998655555555688999999999887311 1345567899999


Q ss_pred             EcccCcccccCC---hhhhhCCCCCcEEEccc
Q 038776          249 DVGSNYIEGEMP---LDLGTTLPNLRIFSITG  277 (281)
Q Consensus       249 ~l~~n~l~~~~p---~~~~~~~~~L~~L~l~~  277 (281)
                      .+-+|+++..--   .-+.. +|+|+.||.+.
T Consensus       119 tll~Npv~~k~~YR~yvl~k-lp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYK-LPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEe-cCcceEeehhh
Confidence            999998873211   11333 89999998764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.37  E-value=0.00081  Score=48.99  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCc
Q 038776          118 QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTT  179 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  179 (281)
                      +|.++++|+.+.+.. .+...-...+.++++|+.+.+..+ +.......+..+++++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            455555666666553 233233334555555666655543 332222234444445555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.37  E-value=0.0012  Score=48.11  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      |.++.+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...+.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            44444455554442 232222334444444555554442 221222234444445555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=0.00016  Score=58.18  Aligned_cols=84  Identities=25%  Similarity=0.297  Sum_probs=43.9

Q ss_pred             CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC--cccccCCccccCCCCCCeEEcccCCCcccccccC---CCCC
Q 038776          145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN--NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLK  219 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~  219 (281)
                      .+..|+.+++.+..++  .-..+-.+++|+.|.++.|  ...+.++.....+++|+++++++|++..  ++++   ..+.
T Consensus        41 ~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence            3445555555444443  1123445667777777777  4444444444445677777777776652  2222   2344


Q ss_pred             CCCeEecccCcCc
Q 038776          220 NLVNLSLVVNNLS  232 (281)
Q Consensus       220 ~L~~L~l~~n~~~  232 (281)
                      +|..|++.+|..+
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            5555566555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.00012  Score=58.86  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=17.4

Q ss_pred             CcCCCCCCEEECCCC--CCccCCchhccCCCcccEeeccCCcc
Q 038776           95 IGNLSFLQKLDLRNN--SFTNEIPPQIGHLRRLQILYLQINSF  135 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~  135 (281)
                      +..+++|+.|.++.|  .+.+.++-....+++|++|++++|.+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            334444455555544  33322332223334444444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=1.3e-05  Score=64.89  Aligned_cols=83  Identities=22%  Similarity=0.161  Sum_probs=38.7

Q ss_pred             CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccc-cccCCCCCCCCeEe
Q 038776          147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLS  225 (281)
Q Consensus       147 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~  225 (281)
                      .+.+.|++-++.+...  .....++.|+.|.|+.|+++..  ..+..+++|++|+|..|.+.+.- -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3444455555544311  1233455555555555555422  22445555555555555554211 12234455555555


Q ss_pred             cccCcCcC
Q 038776          226 LVVNNLSG  233 (281)
Q Consensus       226 l~~n~~~~  233 (281)
                      |..|.-.+
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            55554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=6.3e-05  Score=61.08  Aligned_cols=100  Identities=25%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             CCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc-CCccccCCCCCCeE
Q 038776          122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGL  200 (281)
Q Consensus       122 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L  200 (281)
                      +.+.+.|+..+|.+...  .....++.|++|.|+-|+++..  ..+..+++|++|+|..|.+.+. ....+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45566778888877632  2234678888888888888632  3366788888888888877632 12346677888888


Q ss_pred             EcccCCCccccccc-----CCCCCCCCeEe
Q 038776          201 SLSRNGFYGSIPDT-----FGGLKNLVNLS  225 (281)
Q Consensus       201 ~l~~n~~~~~~~~~-----~~~l~~L~~L~  225 (281)
                      -|..|.-.|.-+..     +..+++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888776554432     23456666665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.98  E-value=3.7e-05  Score=68.65  Aligned_cols=87  Identities=28%  Similarity=0.396  Sum_probs=39.3

Q ss_pred             CCCCCeEEcccCCCccc----ccccCCCCCC-CCeEecccCcCcCC----CCccccCC-CCCCEEEcccCcccccCChhh
Q 038776          194 LSSLRGLSLSRNGFYGS----IPDTFGGLKN-LVNLSLVVNNLSGT----IPPLIFNI-SSIQTFDVGSNYIEGEMPLDL  263 (281)
Q Consensus       194 l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~n~l~~~~p~~~  263 (281)
                      ..++++|++.+|.++..    +...+...++ +..+++..|++.+.    +...+... ..++.++++.|.+++.....+
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44555555555554421    1112222333 44455555555422    12223333 445566666666654433332


Q ss_pred             hh---CCCCCcEEEcccccC
Q 038776          264 GT---TLPNLRIFSITGNQF  280 (281)
Q Consensus       264 ~~---~~~~L~~L~l~~N~l  280 (281)
                      .+   .++.++.+.+++|++
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcc
Confidence            22   244556666665554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.92  E-value=0.0039  Score=30.16  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=8.6

Q ss_pred             ccEeeccCCcccccCCccC
Q 038776          125 LQILYLQINSFDGEIPASI  143 (281)
Q Consensus       125 L~~L~l~~n~~~~~~p~~l  143 (281)
                      |++|++++|+++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555544 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.44  E-value=0.0014  Score=58.94  Aligned_cols=173  Identities=20%  Similarity=0.105  Sum_probs=92.4

Q ss_pred             CCCCCEEECCCCCCccC--CchhccCCCcccEeeccCC-cccccCC----ccCcCCCCCcEEEcccCC-CCCCCchhcC-
Q 038776           98 LSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQIN-SFDGEIP----ASISNCSNLLVVSLALNH-LAGKIPSEFG-  168 (281)
Q Consensus        98 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~l~~n~-~~~~~p~~~~-  168 (281)
                      .+.|+.+.+..+.-...  +-.....+++|+.|+++++ ......+    .....+++|+.++++++. ++...-..++ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56777777776533212  2334557788888888763 2111111    223445778888888877 5544333333 


Q ss_pred             CCCCCCEEeCcCCc-ccccCC-ccccCCCCCCeEEcccCCCcc--cccccCCCCCCCCeEecccCc----Cc--------
Q 038776          169 SLSKLQFLSTTANN-LTGNIP-SSLGNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNN----LS--------  232 (281)
Q Consensus       169 ~l~~L~~L~l~~n~-~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~----~~--------  232 (281)
                      .+++|+.|.+.++. ++...- .....++.|++|+++++....  .+......+++++.+.+....    ++        
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            37788888877666 443322 223456778888888776531  122222234444443322221    11        


Q ss_pred             -----CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCC
Q 038776          233 -----GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL  270 (281)
Q Consensus       233 -----~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L  270 (281)
                           ......+..+++++.+.+.++......-..+..++++|
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence                 01122345677888888888774432223444556666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.38  E-value=0.0059  Score=29.54  Aligned_cols=18  Identities=44%  Similarity=0.626  Sum_probs=9.6

Q ss_pred             CcEEEcccCCCCCCCchhc
Q 038776          149 LLVVSLALNHLAGKIPSEF  167 (281)
Q Consensus       149 L~~L~l~~n~~~~~~p~~~  167 (281)
                      |++|++++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            555555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.40  E-value=0.028  Score=25.22  Aligned_cols=13  Identities=23%  Similarity=0.570  Sum_probs=4.6

Q ss_pred             CCCEEEcccCccc
Q 038776          244 SIQTFDVGSNYIE  256 (281)
Q Consensus       244 ~L~~L~l~~n~l~  256 (281)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.39  E-value=0.0012  Score=52.56  Aligned_cols=84  Identities=23%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      +.+++.||++.+.+. .+...|.-+..+..|+++.|.+. ..|..+..+..+..+++..|+.+ ..|.+++..+++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            478899999998876 34455777788889999999887 78888888888999999999888 8899999999999999


Q ss_pred             cccCCCC
Q 038776          154 LALNHLA  160 (281)
Q Consensus       154 l~~n~~~  160 (281)
                      ...+.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9888765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.30  E-value=0.015  Score=52.22  Aligned_cols=129  Identities=20%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             CCCCcEEEcccCCCCCC--CchhcCCCCCCCEEeCcCC-cccccC----CccccCCCCCCeEEcccCC-CcccccccCC-
Q 038776          146 CSNLLVVSLALNHLAGK--IPSEFGSLSKLQFLSTTAN-NLTGNI----PSSLGNLSSLRGLSLSRNG-FYGSIPDTFG-  216 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n-~~~~~~----~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~-  216 (281)
                      .+.|+.+.+..+.-...  .-.....++.|+.|+++++ ......    ......+.+|+.++++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666555432212  2233445666666666652 111111    1122233556666666655 3332222222 


Q ss_pred             CCCCCCeEecccCc-CcCC-CCccccCCCCCCEEEcccCccc-ccCChhhhhCCCCCcEEE
Q 038776          217 GLKNLVNLSLVVNN-LSGT-IPPLIFNISSIQTFDVGSNYIE-GEMPLDLGTTLPNLRIFS  274 (281)
Q Consensus       217 ~l~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~  274 (281)
                      .+++|+.|.+.++. ++.. +......++.|++|+++++... +..-..+...+++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            25566666655554 3321 2223334555666666665332 221222233355555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.28  E-value=0.0001  Score=65.85  Aligned_cols=184  Identities=22%  Similarity=0.270  Sum_probs=125.3

Q ss_pred             EEEEEcCCCCccee----cCccCcCCCCCCEEECCCCCCccCCc----hhccCC-CcccEeeccCCcccc----cCCccC
Q 038776           77 VTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSFTNEIP----PQIGHL-RRLQILYLQINSFDG----EIPASI  143 (281)
Q Consensus        77 l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~l~~n~~~~----~~p~~l  143 (281)
                      +..+.+.+|.+...    +...+....+|..|++++|.+.+.--    ..+... ..+++|++..|.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56677888877643    33456677889999999998873221    122232 567788888888764    234556


Q ss_pred             cCCCCCcEEEcccCCCCC----CCchhc----CCCCCCCEEeCcCCccccc----CCccccCCCC-CCeEEcccCCCccc
Q 038776          144 SNCSNLLVVSLALNHLAG----KIPSEF----GSLSKLQFLSTTANNLTGN----IPSSLGNLSS-LRGLSLSRNGFYGS  210 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~----~~p~~~----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~-L~~L~l~~n~~~~~  210 (281)
                      .....++.++++.|.+..    .++..+    ....++++|.+.+|.++..    ....+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            667889999999998752    122233    3577899999999887632    1123344455 77799999988643


Q ss_pred             ----ccccCCCC-CCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCC
Q 038776          211 ----IPDTFGGL-KNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       211 ----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p  260 (281)
                          ..+.+..+ ..++.+++..|.++..    +...+...+.++.+.+.+|.+.+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence                23344555 7889999999999854    33455667789999999999886443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.81  E-value=0.062  Score=26.95  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=14.0

Q ss_pred             CCCCEEEcccCcccccCChhhh
Q 038776          243 SSIQTFDVGSNYIEGEMPLDLG  264 (281)
Q Consensus       243 ~~L~~L~l~~n~l~~~~p~~~~  264 (281)
                      ++|++|++++|.+. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            46677777777776 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.81  E-value=0.062  Score=26.95  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=14.0

Q ss_pred             CCCCEEEcccCcccccCChhhh
Q 038776          243 SSIQTFDVGSNYIEGEMPLDLG  264 (281)
Q Consensus       243 ~~L~~L~l~~n~l~~~~p~~~~  264 (281)
                      ++|++|++++|.+. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            46677777777776 6666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.56  E-value=0.0012  Score=52.58  Aligned_cols=87  Identities=16%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +...+..+.||++.|++. ..-..|+.+..+..|+++.|.+. .+|..++....++.+++..|..+ ..|.+++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            445566677777777655 34445556666677777777666 66766666666667766666655 6666777777777


Q ss_pred             EEeCcCCccc
Q 038776          175 FLSTTANNLT  184 (281)
Q Consensus       175 ~L~l~~n~~~  184 (281)
                      +++...|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7777666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.57  E-value=0.047  Score=26.83  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=10.9

Q ss_pred             CCCCEEEcccCcccccCChh
Q 038776          243 SSIQTFDVGSNYIEGEMPLD  262 (281)
Q Consensus       243 ~~L~~L~l~~n~l~~~~p~~  262 (281)
                      ++|++|++++|.+++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45667777777766554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.02  E-value=0.037  Score=43.20  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=59.1

Q ss_pred             CCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc-cccccC-CCCCCCCeEecccC-cCcCCCCccccCCCCC
Q 038776          169 SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTF-GGLKNLVNLSLVVN-NLSGTIPPLIFNISSI  245 (281)
Q Consensus       169 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~-~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L  245 (281)
                      .-..++.++.++..+....-..+.+++.++.|.+.+|.--+ .--+.+ +..++|+.|++++| .++..--..+..+++|
T Consensus        99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen   99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            33457888888888887666777788888888887775321 111111 23578899999876 4665555677778888


Q ss_pred             CEEEcccCcc
Q 038776          246 QTFDVGSNYI  255 (281)
Q Consensus       246 ~~L~l~~n~l  255 (281)
                      +.|++.+-+.
T Consensus       179 r~L~l~~l~~  188 (221)
T KOG3864|consen  179 RRLHLYDLPY  188 (221)
T ss_pred             HHHHhcCchh
Confidence            8888776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.10  E-value=0.24  Score=43.07  Aligned_cols=84  Identities=20%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             CCCCcEEEcccCCCCCCCc-hh-cCCCCCCCEEeCcCCccccc-CCccc-cCCCCCCeEEcccCCCc--ccccccCCCCC
Q 038776          146 CSNLLVVSLALNHLAGKIP-SE-FGSLSKLQFLSTTANNLTGN-IPSSL-GNLSSLRGLSLSRNGFY--GSIPDTFGGLK  219 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~p-~~-~~~l~~L~~L~l~~n~~~~~-~~~~l-~~l~~L~~L~l~~n~~~--~~~~~~~~~l~  219 (281)
                      +..|++++.+++...+..+ .. ..+..+|+.+.+..|+.-+. --..+ .+.+.|+.+++.++...  +++...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4556666665543321111 11 23445666666665542111 11111 13345555555554331  11222223445


Q ss_pred             CCCeEecccC
Q 038776          220 NLVNLSLVVN  229 (281)
Q Consensus       220 ~L~~L~l~~n  229 (281)
                      .|+.+.++++
T Consensus       373 ~lr~lslshc  382 (483)
T KOG4341|consen  373 RLRVLSLSHC  382 (483)
T ss_pred             hhccCChhhh
Confidence            5555555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.72  E-value=0.71  Score=23.24  Aligned_cols=13  Identities=23%  Similarity=0.455  Sum_probs=7.5

Q ss_pred             CCCcEEEcccccC
Q 038776          268 PNLRIFSITGNQF  280 (281)
Q Consensus       268 ~~L~~L~l~~N~l  280 (281)
                      .+|+.|++++|++
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            4556666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.35  E-value=0.59  Score=40.75  Aligned_cols=13  Identities=31%  Similarity=0.207  Sum_probs=6.8

Q ss_pred             CCCCCeEEcccCC
Q 038776          194 LSSLRGLSLSRNG  206 (281)
Q Consensus       194 l~~L~~L~l~~n~  206 (281)
                      ..+|+.+-+.+++
T Consensus       319 ~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  319 CHNLQVLELSGCQ  331 (483)
T ss_pred             CCceEEEeccccc
Confidence            3455555555554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.15  E-value=0.72  Score=23.57  Aligned_cols=13  Identities=31%  Similarity=0.743  Sum_probs=8.0

Q ss_pred             CCCcEEEcccccC
Q 038776          268 PNLRIFSITGNQF  280 (281)
Q Consensus       268 ~~L~~L~l~~N~l  280 (281)
                      ++|+.|||++|.|
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            3566666666655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.77  E-value=0.36  Score=37.83  Aligned_cols=82  Identities=17%  Similarity=0.105  Sum_probs=58.6

Q ss_pred             CCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC-CCccc-cCCCCCCEEEcccC-cccccCChhhhhCCCCCc
Q 038776          195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT-IPPLI-FNISSIQTFDVGSN-YIEGEMPLDLGTTLPNLR  271 (281)
Q Consensus       195 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l-~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~L~  271 (281)
                      ..++.++-+++.+....-+.+..++.++.|.+.++.--+. --..+ +..++|+.|++++| .|++.....+.+ +++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence            3567888888888766666778888899998888753221 00111 14578999999998 688666666666 89999


Q ss_pred             EEEccc
Q 038776          272 IFSITG  277 (281)
Q Consensus       272 ~L~l~~  277 (281)
                      .|++.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-05

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSF-LQKLDLRNNSFTNEIPPQIGHLRR--LQILY 129
           + + + +LDL   + +G LP  + NLS  L  LDL +N+F+  I P +    +  LQ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
           LQ N F G+IP ++SNCS L+ + L+ N+L+G IPS  GSLSKL+ L    N L G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
                              G IP                    G IP  I  + ++    
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 250 VGSNYIEGEMPLDLG 264
           + +N   G +P +LG
Sbjct: 521 LSNNSFSGNIPAELG 535

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSF-LQKLDLRNNSFTNEIPPQIGHLRR--LQILY 129
           + + + +LDL   + +G LP  + NLS  L  LDL +N+F+  I P +    +  LQ LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
           LQ N F G+IP ++SNCS L+ + L+ N+L+G IPS  GSLSKL+ L    N L G IP 
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
                              G IP                    G IP  I  + ++    
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 250 VGSNYIEGEMPLDLG 264
           + +N   G +P +LG
Sbjct: 518 LSNNSFSGNIPAELG 532

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRHQ--RVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    Q  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87  L---------------------------AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI 119
           L                            G +PP I  L+ L  L + + + +  IP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL-QFLST 178
             ++ L  L    N+  G +P SIS+  NL+ ++   N ++G IP  +GS SKL   ++ 
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 179 TANNLTGNIP 188
           + N LTG IP
Sbjct: 182 SRNRLTGKIP 191

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL NL++   +  +I    FL +L L  NS T E+P +I +L  L++L L  N     +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 140 PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL 183
           PA + +C  L       +++   +P EFG+L  LQFL    N L
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (526), Expect = 2e-65
 Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 34/258 (13%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRHQ--RVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    Q  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  LAGT--LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASIS 144
           L     +P  + NL +L  L +                          N+  G IP +I+
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGI-----------------------NNLVGPIPPAIA 98

Query: 145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR 204
             + L  + +   +++G IP     +  L  L  + N L+G +P S+ +L +L G++   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 205 NGFYGSIPDTFGGLKNLVN-LSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDL 263
           N   G+IPD++G    L   +++  N L+G IPP   N+ ++   D+  N +EG+  +  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 264 GTTLPNLRIFSITGNQFT 281
           G +  N +   +  N   
Sbjct: 218 G-SDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (389), Expect = 4e-45
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 4/177 (2%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRL-QILYLQINSFD 136
             LD     L+GTLPP I +L  L  +    N  +  IP   G   +L   + +  N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
           G+IP + +N  NL  V L+ N L G     FGS    Q +    N+L  ++   +G   +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L GL L  N  YG++P     LK L +L++  NNL G IP    N+         +N
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  133 bits (338), Expect = 2e-37
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFL-QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
             +     +++G +P   G+ S L   + +  N  T +IPP   +L  L  + L  N  +
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
           G+      +  N   + LA N LA  +    G    L  L    N + G +P  L  L  
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPP 237
           L  L++S N   G IP   G L+     +   N  L G+  P
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  205 bits (523), Expect = 4e-61
 Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 18/267 (6%)

Query: 24  SAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQ 83
            A        +   L+ FK  + +    +L  W+ + + C + GVTC     +VT +DL 
Sbjct: 3   QASPSQSLYREIHQLISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLS 58

Query: 84  NLKLA---GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP 140
           +  L      +   + +L+ L+ L L N+     +         L  L L  NS  G + 
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVT 117

Query: 141 A--SISNCSNLLVVSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSL---GNL 194
              S+ +CS L  ++++ N L      S    L+ L+ L  +AN+++G            
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
             L+ L++S N   G +        NL  L +  NN S  I P + + S++Q  D+  N 
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNK 234

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           + G+    +  T   L++ +I+ NQF 
Sbjct: 235 LSGDFSRAIS-TCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (455), Expect = 2e-51
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 2/205 (0%)

Query: 78  TILDLQNLKLAGTLPPHIGN--LSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
             LDL +   +G + P++     + LQ+L L+NN FT +IPP + +   L  L+L  N  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
            G IP+S+ + S L  + L LN L G+IP E   +  L+ L    N+LTG IPS L N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255
           +L  +SLS N   G IP   G L+NL  L L  N+ SG IP  + +  S+   D+ +N  
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQF 280
            G +P  +      +    I G ++
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (450), Expect = 8e-51
 Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 7/208 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             LD+ +   +  +P  +G+ S LQ LD+  N  + +    I     L++L +  N F G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
            IP       +L  +SLA N   G+IP    G+   L  L  + N+  G +P   G+ S 
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 197 LRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS-SIQTFDVGSNY 254
           L  L+LS N F G +P DT   ++ L  L L  N  SG +P  + N+S S+ T D+ SN 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 255 IEGEMPLDLG-TTLPNLRIFSITGNQFT 281
             G +  +L       L+   +  N FT
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (445), Expect = 4e-50
 Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 5/201 (2%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L LQN    G +PP + N S L  L L  N  +  IP  +G L +L+ L L +N  +G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           EIP  +     L  + L  N L G+IPS   + + L ++S + N LTG IP  +G L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L LS N F G+IP   G  ++L+ L L  N  +GTIP  +F     Q+  + +N+I G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAG 572

Query: 258 EMPLDLGTTLPNLRIFSITGN 278
           +  + +       +     GN
Sbjct: 573 KRYVYIK-NDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  174 bits (444), Expect = 5e-50
 Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 5/208 (2%)

Query: 78  TILDLQNLKLAGTLPP-HIGNLSFLQKLDLRNNSFTNEIPPQIGHLR-RLQILYLQINSF 135
             L L +   +G LP   +  +  L+ LDL  N F+ E+P  + +L   L  L L  N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 136 DGEIPASISNC--SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
            G I  ++     + L  + L  N   GKIP    + S+L  L  + N L+G IPSSLG+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           LS LR L L  N   G IP     +K L  L L  N+L+G IP  + N +++    + +N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            + GE+P  +G  L NL I  ++ N F+
Sbjct: 501 RLTGEIPKWIGR-LENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (375), Expect = 2e-40
 Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 8/203 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN--SF 135
             LDL      GT+P  +   S      +  N    +    I +    +  +   N   F
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
            G     ++  S     ++      G     F +   + FL  + N L+G IP  +G++ 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255
            L  L+L  N   GSIPD  G L+ L  L L  N L G IP  +  ++ +   D+ +N +
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 256 EGEMPLDLGTTLPNLRIFSITGN 278
            G +P                 N
Sbjct: 717 SGPIP--EMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 7e-25
 Identities = 33/114 (28%), Positives = 52/114 (45%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
               ++ +    G   P   N   +  LD+  N  +  IP +IG +  L IL L  N   
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
           G IP  + +   L ++ L+ N L G+IP    +L+ L  +  + NNL+G IP  
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (358), Expect = 2e-38
 Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 37/264 (14%)

Query: 53  LGSWNDSIHFCEWY---GVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNN 109
             +WN +     W    GV+ +  + RVT L L+    +G +P  IG L+ L+ L L ++
Sbjct: 57  GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 110 SFT----NEIPPQIGHLRRLQILYLQINSFDGEIPASIS--NCSNLLVVSLALNHLAGKI 163
                     P  I      +        +           + S+L+   +  +     I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 164 PSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF---------------- 207
                   K   +   +NN+T  +  ++  L+ LR   +  + F                
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 208 ---YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG 264
              Y +    +  LK+L ++ +        +P  +  +  +Q  +V  N       L   
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 265 -------TTLPNLRIFSITGNQFT 281
                       ++I  I  N   
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (296), Expect = 5e-30
 Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 78  TILDLQNLKLA-GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
            I+ +    L    +   +  +  L  L+   N       P  G   +L  L L  N   
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQIT 366

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPS--EFGSLSKLQFLSTTANNLTG-------NI 187
                       +  +S A N L   IP+  +  S+S +  +  + N +          +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG-------TIPPLIF 240
             +     ++  ++LS N       + F     L +++L+ N L+               
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N   + + D+  N +         TTLP L    ++ N F+
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 2e-28
 Identities = 35/219 (15%), Positives = 78/219 (35%), Gaps = 18/219 (8%)

Query: 79  ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFDG 137
            +  + LK              +Q + +  N+     +   +  +++L +L    N  +G
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL--GNLS 195
           ++P +  +   L  ++LA N +     +  G   +++ LS   N L   IP+     ++S
Sbjct: 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 196 SLRGLSLSRN-------GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTF 248
            +  +  S N         +  +  T     N+ +++L  N +S     L    S + + 
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 249 DVGSNYIEGEMPLDLGT------TLPNLRIFSITGNQFT 281
           ++  N +       L            L    +  N+ T
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (275), Expect = 3e-27
 Identities = 42/227 (18%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 78  TILDLQNLKLAGTLPPH--IGNLSFLQKLDLRNNSFT-------NEIPPQIGHLRRLQIL 128
             L   + KL   +P      ++S +  +D   N          + + P       +  +
Sbjct: 380 ENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAG-------KIPSEFGSLSKLQFLSTTAN 181
            L  N          S  S L  ++L  N L              F +   L  +    N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 182 NLTGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV------NLSLVVNNLSGT 234
            LT          L  L G+ LS N F    P        L             N     
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            P  I    S+    +GSN I   +        PN+ +  I  N   
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK-VN---EKITPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 9e-25
 Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 23/205 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFT-------NEIPPQIGHLRRLQILYL 130
           + ++L N +++          S L  ++L  N  T        +      +   L  + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 131 QINSFDGEIPASI--SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS------TTANN 182
           + N     +      +    L+ + L+ N  +   P++  + S L+            N 
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 183 LTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNI 242
                P  +    SL  L +  N     + +      N+  L +  N         +   
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610

Query: 243 SSIQTFDVGSNY---IEGEMPLDLG 264
                + +  +    I G   LD+ 
Sbjct: 611 IEAGMYMLFYDKTQDIRGCDALDIK 635

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  131 bits (331), Expect = 6e-35
 Identities = 43/210 (20%), Positives = 68/210 (32%), Gaps = 6/210 (2%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
              LDL    L         +   LQ LDL               L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLS 195
                + S  S+L  +     +LA       G L  L+ L+   N +    +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
           +L  L LS N            L  +    ++L L +N ++  I P  F    +    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +N+    +       L  L +  +   +F 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (329), Expect = 1e-34
 Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 5/208 (2%)

Query: 78  TILDLQN--LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
             LDL    L   G         + L+ LDL  N     +      L +L+ L  Q ++ 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 136 DGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI-PSSLGN 193
                 S+  +  NL+ + ++  H        F  LS L+ L    N+   N  P     
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L +L  L LS+       P  F  L +L  L++  NN           ++S+Q  D   N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I      +L     +L   ++T N F 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 3e-28
 Identities = 46/191 (24%), Positives = 69/191 (36%), Gaps = 5/191 (2%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
             LD Q+  L       +  +L  L  LD+ +             L  L++L +  NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 137 GEI-PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
               P   +   NL  + L+   L    P+ F SLS LQ L+ + NN           L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 196 SLRGLSLSRNGFYGSIPDTFGGL-KNLVNLSLVVNNLSGTIP--PLIFNISSIQTFDVGS 252
           SL+ L  S N    S          +L  L+L  N+ + T      +  I   +   V  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 253 NYIEGEMPLDL 263
             +E   P D 
Sbjct: 579 ERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 8e-26
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 11/210 (5%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             V+   L ++ +              Q L+L N  F      ++  L+RL     +   
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG- 338

Query: 135 FDGEIPASISNCSNLLVVSLALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
                  S  +  +L  + L+ N L+  G         + L++L  + N +   + S+  
Sbjct: 339 ----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 193 NLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
            L  L  L    +          F  L+NL+ L +   +       +   +SS++   + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            N  +     D+ T L NL    ++  Q  
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.6 bits (241), Expect = 9e-23
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 40/243 (16%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           + L L    +          LS LQKL     +  +     IGHL+ L+ L +  N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 138 -EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTT----ANNLTGNIPSSLG 192
            ++P   SN +NL  + L+ N +     ++   L ++  L+ +     N +    P +  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 193 NLSSLRGLSLSRNGFYGSIPDT----------------------------FGGLKNLVNL 224
            +  L  L+L  N    ++  T                               L+ L NL
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 225 SLVVNNLS------GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278
           ++    L+        I  L   ++++ +F + S  IE            +L + +    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 279 QFT 281
           QF 
Sbjct: 318 QFP 320

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 2/144 (1%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           +IP ++    +   + L+ N L       F S  +LQ L  +   +      +  +LS L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L L+ N         F GL +L  L  V  NL+      I ++ +++  +V  N I+ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
               +  + L NL    ++ N+  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 19/216 (8%)

Query: 78  TILDLQNLKLAGT-LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI----LYLQI 132
             L++ +  +    LP +  NL+ L+ LDL +N   +     +  L ++ +    L L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLS------TTANNLTG 185
           N  +   P +      L  ++L  N  +  +       L+ L+             NL  
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 186 NIPSSLGNLSSLRGLSLSRN---GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNI 242
              S+L  L +L            +   I D F  L N+ + SLV   +   +    +N 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN- 303

Query: 243 SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278
              Q  ++ +    G+ P     +L  L   S  G 
Sbjct: 304 FGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
           + +T LDL   +L    P    +LS LQ L++ +N+F +        L  LQ+L   +N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 135 FDGEIPASISNC-SNLLVVSLALNHLAGKIPSE--FGSLSKLQFLSTTANNLTGNIPSSL 191
                   + +  S+L  ++L  N  A     +     +   + L      +    PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 192 GNLS 195
             + 
Sbjct: 590 QGMP 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (332), Expect = 8e-35
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 11/215 (5%)

Query: 78  TILDLQNLKLAGTLPPH-IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
            +LDL   ++   L       L  + ++ L  N +          +  LQ L L+  +  
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 137 G--EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT--------GN 186
                P+      NL ++ L+ N++A         L KL+ L    NNL         G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246
               L  LS L  L+L  NGF     + F  L  L  + L +NNL+     +  N  S++
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           + ++  N I        G    NL    +  N F 
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (332), Expect = 9e-35
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 4/209 (1%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
           +T+L+L + +L      +    S L  LD+  N+ +   P     L  L++L LQ N   
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
                + + C+NL  + L  N +     + F     L  L  + N L+     +   L +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKN--LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
           L+ L LS N       +      N  L  L L  N +    P     I  +    + +  
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 255 IEGEMP--LDLGTTLPNLRIFSITGNQFT 281
           +   +   L L     ++R  S++ +Q +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 6e-32
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 6/206 (2%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
            + D  +LKL   +P  +   + +  L+L +N              +L  L +  N+   
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P        L V++L  N L+      F   + L  L   +N++     +      +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI--FNISSIQTFDVGSNYI 255
             L LS NG   +   T   L+NL  L L  N +       +  F  SS++  ++ SN I
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
           +   P      +  L    +   Q  
Sbjct: 184 KEFSPGCFH-AIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 3e-28
 Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 15/219 (6%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP--QIGHLRRLQILYLQINSF 135
             LDL +  L+ T       L  LQ+L L NN           I     L+ L L  N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFG---SLSKLQFLSTTANNLTGNIPSSLG 192
               P        L  + L    L   +  +     + + ++ LS + + L+    ++  
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 193 NL--SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250
            L  ++L  L LS N       D+F  L  L    L  NN+       +  + +++  ++
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 251 GSNYIEGEMPLDLGTT--------LPNLRIFSITGNQFT 281
             ++ +  + L             L  L   ++  N   
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 1e-27
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 19/225 (8%)

Query: 75  QRVTILDLQNLKLAGTLPPHIG---NLSFLQKLDLRNNSFTNEIPPQIGHLR--RLQILY 129
            R+  L L N++L  +L   +      + ++ L L N+  +         L+   L +L 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL---------STTA 180
           L  N+ +     S +    L    L  N++          L  +++L         S + 
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS-GTIPPLI 239
            +L      S   L  L  L++  N   G   + F GL NL  LSL  +  S  T+    
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 240 F---NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           F     S +   ++  N I           L +L +  +  N+  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 3e-27
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 15/221 (6%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNN---------SFTNEIPPQIGHLRRLQ 126
           ++    L+   +       +  L  ++ L+L+ +         S           L+ L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 127 ILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE--FGSL--SKLQFLSTTANN 182
            L ++ N   G      +   NL  +SL+ +  + +  +   F SL  S L  L+ T N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 183 LTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFN 241
           ++     +   L  L  L L  N     +    + GL+N+  + L  N            
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 242 ISSIQTFDVGSNYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
           + S+Q   +    ++  +        L NL I  ++ N   
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 5e-27
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ------ 131
           T+LDL    L          L  L+   L  N+  +     +  L  ++ L L+      
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 132 ---INSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS-----TTANNL 183
              + S       S      L  +++  N + G   + F  L  L++LS     T+   L
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 184 TGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NI 242
           T     SL + S L  L+L++N       D F  L +L  L L +N +   +    +  +
Sbjct: 371 TNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 243 SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +I    +  N             +P+L+   +      
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 5e-27
 Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG---HLRRLQILYLQINS 134
             L+L + ++    P     +  L  L L N      +  ++        ++ L L  + 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 135 FDGEIPASISNC--SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
                  +      +NL ++ L+ N+L       F  L +L++     NN+      SL 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 193 NLSSLRGLSLSRNGFYGSI---------PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS 243
            L ++R L+L R+    SI           +F  LK L +L++  N++ G    +   + 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 244 SIQTFDVGSNYIEGEMPLD---LGTTLPNLRIFSITGNQFT 281
           +++   + +++       +   +      L I ++T N+ +
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 6e-26
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNN--SFTNEIPPQIGHL--RRLQILYL 130
           + +  L++++  + G        L  L+ L L N+  S           L    L IL L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 131 QINSFDGEIPASISNCSNLLVVSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPS 189
             N        + S   +L V+ L LN +  ++   E+  L  +  +  + N       +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 190 SLGNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQT 247
           S   + SL+ L L R       S P  F  L+NL  L L  NN++     ++  +  ++ 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 248 FDVGSNYIE-------GEMPLDLGTTLPNLRIFSITGNQFT 281
            D+  N +           P+     L +L I ++  N F 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 6e-23
 Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 75  QRVTILDLQNLKLAG--TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ- 131
             +  L L+ + L    + P     L  L  LDL NN+  N     +  L +L+IL LQ 
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 132 -------INSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT 184
                   ++  G     +   S+L +++L  N         F  L +L+ +    NNL 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 185 GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-GLKNLVNLSLVVNNLSGTIPPLIFNIS 243
               S   N  SL+ L+L +N         FG   +NL  L +  N    T   + + ++
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 244 SIQTFDVGSNYIEGEM 259
            I         +    
Sbjct: 634 WINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 3/130 (2%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             + IL+L++            +L  L+ +DL  N+          +   L+ L LQ N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 135 FDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                         NL  + +  N       S    ++ +    T    L+ +   +   
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT-- 653

Query: 194 LSSLRGLSLS 203
                G  + 
Sbjct: 654 PPHYHGFPVR 663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 4e-30
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 2/207 (0%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
              L+     L          L  L  LDL                 RL  L L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
                ++S    L  +      ++        +   L+ L   +N+++            
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS-GTIPPLIFNISSIQTFDVGSNYI 255
           L+ L    N  +    +    L+   NLSL +N      I P  F+ +  Q+ + G    
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 256 EGEMPLDL-GTTLPNLRIFSITGNQFT 281
              +   L  +T+ +L + +       
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (278), Expect = 1e-27
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 6/210 (2%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
            V  ++LQ               S LQ+LDL     + E+P  +  L  L+ L L  N F
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLT--GNIPSSLG 192
           +     S SN  +L  +S+  N    ++ +    +L  L+ L  + +++         L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVG 251
           NLS L+ L+LS N       + F     L  L L    L        F N+  ++  ++ 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            + ++      L   LP L+  ++ GN F 
Sbjct: 434 HSLLDI-SSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 2e-26
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 7/212 (3%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
            +  LDL    L+  LP  +  LS L+KL L  N F N       +   L  L ++ N+ 
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 136 DGEI-PASISNCSNLLVVSLALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
             E+    + N  NL  + L+ + +        +  +LS LQ L+ + N        +  
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 193 NLSSLRGLSLSRNGFYGSIPDT-FGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
               L  L L+          + F  L  L  L+L  + L  +   L   + ++Q  ++ 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 252 SNYIEGEMPLDLGT--TLPNLRIFSITGNQFT 281
            N+          +  TL  L I  ++    +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 2e-26
 Identities = 47/210 (22%), Positives = 77/210 (36%), Gaps = 8/210 (3%)

Query: 78  TILDLQN--LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
             LDL +  ++ +      + NLS LQ L+L  N   +          +L++L L     
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 136 DGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI---PSSL 191
             +   S   N   L V++L+ + L       F  L  LQ L+   N+         +SL
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
             L  L  L LS           F  LK + ++ L  N L+ +      +       ++ 
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLA 531

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           SN+I   +P  L   L   R  ++  N   
Sbjct: 532 SNHISIILPSLLPI-LSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 10/216 (4%)

Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP-----QIGHLRRLQI 127
           +      L+L    +   + P   + +  Q L+         I        I  L     
Sbjct: 177 QQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI 187
             +        +   +    ++  ++L  ++      + F   S LQ L  TA +L+  +
Sbjct: 236 EDMDDEDISPAVFEGLCE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQ 246
           PS L  LS+L+ L LS N F      +     +L +LS+  N     +      N+ +++
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 247 TFDVGSNYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
             D+  + IE  +        L +L+  +++ N+  
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 5/161 (3%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
            +LDL   +L          NL  L+ L+L ++            L  LQ L L      
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
             + +   S+     L ++ L+   L+      F SL  +  +  + N LT +   +L +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234
           L  +  L+L+ N     +P     L     ++L  N L  T
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI---PPQIGHLRRLQILYLQINS 134
            +L+L +  L  +       L  LQ L+L+ N F          +  L RL+IL L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
                  + ++   +  V L+ N L          L  +  L+  +N+++  +PS L  L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPIL 546

Query: 195 SSLRGLSLSRNGFYGS----------------IPD----TFGGLKNLVNLSLVVNNLS 232
           S  R ++L +N    +                + D           L  + L    LS
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
           R+ IL L    L+        +L  +  +DL +N  T+     + HL+ +  L L  N  
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
              +P+ +   S    ++L  N L         ++  L++       L     +   N  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPP 591

Query: 196 SLRGLSLSRN 205
            LRG+ LS  
Sbjct: 592 LLRGVRLSDV 601

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 8e-29
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 14/211 (6%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             + +    L   LP  +   + L+ L L  N     +P  I  L RL+ L ++      
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 138 EIPASISNCS---------NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP 188
           E+P  +++           NL  + L    +   +P+   +L  L+ L    + L+  + 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTF 248
            ++ +L  L  L L       + P  FGG   L  L L   +   T+P  I  ++ ++  
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 249 DVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279
           D+        +P  +   LP   I  +  + 
Sbjct: 283 DLRGCVNLSRLPSLIA-QLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 12/169 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSF---------LQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
             L ++       LP  + +            LQ L L        +P  I +L+ L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP 188
            ++ +     +  +I +   L  + L         P  FG  + L+ L     +    +P
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP 237
             +  L+ L  L L        +P     L     + +   +L   +  
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 6e-21
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L  Q           +         D            +  +    QI      +   
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL-K 69

Query: 138 EIPASISNCSNLLVVSLAL--NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
                + + +    V+L L    L  + P +   LS LQ ++  A  L   +P ++   +
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS---------SIQ 246
            L  L+L+RN    ++P +   L  L  LS+        +P  + +           ++Q
Sbjct: 128 GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +    I   +P  +   L NL+   I  +  +
Sbjct: 187 SLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 6e-17
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L ++N  L+  L P I +L  L++LDLR  +     PP  G    L+ L L+  S   
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN---NLTGNIPSSLG 192
            +P  I   + L  + L       ++PS    L     +    +    L  + P +  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (284), Expect = 2e-28
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
           T           +    K          NL  L  ++L N     ++P  +  L  LQ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 129 YLQINSFDG---------EIPASISNCSNLLVVSLALNHLAG-KIPSEFGSLSKLQFLST 178
            +  N              +         + +  +  N+L      +    + KL  L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPL 238
             N +      + G    L  L L  N       D       +  L    N L   IP +
Sbjct: 581 VHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637

Query: 239 IF--NISSIQTFDVGSNYIEGEMPLDLGTTLP-----NLRIFSITGNQFT 281
               ++  + + D   N I  E   ++  ++      N    +++ N+  
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQ 686

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (278), Expect = 1e-27
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 25/223 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFT---------NEIPPQIGHLRRLQIL 128
           T ++L N      LP  + +L  LQ L++  N              +        ++QI 
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 129 YLQINSFDGEIPAS--ISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN 186
           Y+  N+ + E PAS  +     L ++    N +  +    FG+  KL  L    N +   
Sbjct: 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-E 609

Query: 187 IPSSLG-NLSSLRGLSLSRNGFYGSIPDTF--GGLKNLVNLSLVVNNLSGTIPPL----- 238
           IP         + GL  S N     IP+ F    +  + ++    N +      +     
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 239 IFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +   +  T  +  N I+   P +L  T   +    ++ N  T
Sbjct: 669 DYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 9e-26
 Identities = 38/227 (16%), Positives = 62/227 (27%), Gaps = 31/227 (13%)

Query: 78  TILDLQNLKLAGTLPP--HIGNLSFLQKLDLRNNSFTNEIPPQIG------HLRRLQILY 129
             L   + KL   +P   +  ++  +  +D   N         I              + 
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVT 679

Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHL-------AGKIPSEFGSLSKLQFLSTTANN 182
           L  N          +  S +  + L+ N +              + +   L  +    N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 183 LTGNIPSSL--GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV------NLSLVVNNLSGT 234
           LT  +        L  L  + +S N F  S P        L             N +   
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            P  I    S+    +GSN I  ++   L    P L I  I  N   
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (260), Expect = 3e-25
 Identities = 41/329 (12%), Positives = 78/329 (23%), Gaps = 83/329 (25%)

Query: 29  SGNETDRAALLEFKSKI----------TNDALGVLGSWNDSIHFCEWYGVTCS--PRHQR 76
           +    D  AL      +          T +      +WN +     W          + R
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR 324

Query: 77  VTILDL-------------------------------------------------QNLKL 87
           VT L L                                                 ++   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 88  AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG------EIPA 141
                  +     L   DL  ++      P++  +++   + L+             I  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201
           +I   + L ++  A +       +     +   +          N   S  NL  L  + 
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVE 497

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG---------TIPPLIFNISSIQTFDVGS 252
           L        +PD    L  L +L++  N              +         IQ F +G 
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 253 NYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N +E          +  L +     N+  
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.3 bits (242), Expect = 7e-23
 Identities = 29/215 (13%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 78  TILDLQNLKLAGTLPPHIG------NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ 131
             +D    K+ G+   +I              + L  N               +  + L 
Sbjct: 647 GSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 132 INSFD-------GEIPASISNCSNLLVVSLALNHLAGKIPSE--FGSLSKLQFLSTTANN 182
            N               +  N   L  + L  N L   +  +    +L  L  +  + N 
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNC 764

Query: 183 LTGNIPSSLGNLSSLRGLSLSR------NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
            +   P+   N S L+   +        N      P       +L+ L +  N++   + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822

Query: 237 PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
             +     +   D+  N       +D+ +  P + 
Sbjct: 823 EKLT--PQLYILDIADNPNIS---IDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 25/188 (13%), Positives = 57/188 (30%), Gaps = 21/188 (11%)

Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-------EIPPQIGHLRRL 125
           +    + + L   ++           S +  + L NN  T+              +   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 126 QILYLQINSFDGEIPASI--SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS------ 177
             + L+ N     +      +    L  + ++ N  +   P++  + S+L+         
Sbjct: 731 TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 178 TTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL-SGTIP 236
              N +    P+ +    SL  L +  N     + +       L  L +  N   S  + 
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVT 845

Query: 237 PLIFNISS 244
            +   I +
Sbjct: 846 SVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 7e-17
 Identities = 27/173 (15%), Positives = 50/173 (28%), Gaps = 20/173 (11%)

Query: 75  QRVTILDLQNLKL-------AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI--GHLRRL 125
             ++ + L N  +             +  N   L  +DLR N  T  +        L  L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755

Query: 126 QILYLQINSFDGEIPASISNCSNLLVVSL------ALNHLAGKIPSEFGSLSKLQFLSTT 179
             + +  N F    P    N S L    +        N +  + P+   +   L  L   
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 180 ANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
           +N++   +   L     L  L ++ N        +           L+ +   
Sbjct: 815 SNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (273), Expect = 6e-27
 Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 6/211 (2%)

Query: 75  QRVTILDLQNLKLA--GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI 132
             ++ LDL    L+  G         + L+ LDL  N     +      L  LQ L  Q 
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQH 408

Query: 133 NSFDGEIPAS-ISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS- 190
           ++       S   +   LL + ++  +        F  L+ L  L    N+   N  S+ 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250
             N ++L  L LS+          F  L  L  L++  NNL          + S+ T D 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             N IE      L     +L  F++T N   
Sbjct: 529 SFNRIET-SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (271), Expect = 1e-26
 Identities = 42/209 (20%), Positives = 67/209 (32%), Gaps = 4/209 (1%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
              +DL    L         N S LQ LDL               L  L  L L  N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLS 195
              P S S  ++L  +      LA       G L  L+ L+   N +    +P+   NL+
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN---NLSGTIPPLIFNISSIQTFDVGS 252
           +L  + LS N       +    L+    ++L ++   N    I    F    +    +  
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 253 NYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N+    +       L  L +  +   +F 
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 7e-19
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 11/210 (5%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             V+ + L  + +       +      Q L +       + P     L  L+ L L +N 
Sbjct: 285 ANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNK 339

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEF--GSLSKLQFLSTTANNLTGNIPSSLG 192
               I        +L  + L+ N L+      +     + L+ L  + N     + ++  
Sbjct: 340 GS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396

Query: 193 NLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
            L  L+ L    +          F  L+ L+ L +   N       +   ++S+ T  + 
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            N  +     ++     NL    ++  Q  
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 7e-18
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 2/144 (1%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           ++P  I   S+   + L+ N L       F + S+LQ+L  +   +      +   L  L
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L L+ N      P +F GL +L NL  V   L+      I  + +++  +V  N+I  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
                  + L NL    ++ N   
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 21/218 (9%)

Query: 78  TILDLQNLKLAG-TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI----LYLQI 132
             L++ +  +    LP +  NL+ L  +DL  N         +  LR        L + +
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL 191
           N     I         L  ++L  N  +  I      +L+ L                 +
Sbjct: 191 NPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 192 GNLSSLRGL--------SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS 243
              S + GL         L+    +      F  L N+  +SL   ++   +  +  +  
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH-F 307

Query: 244 SIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             Q+  +    ++    LD    LP L+  ++T N+ +
Sbjct: 308 KWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNKGS 341

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.3 bits (240), Expect = 1e-22
 Identities = 43/209 (20%), Positives = 68/209 (32%), Gaps = 6/209 (2%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
              LDL    L         +   LQ LDL               L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT-GNIPSSLGNLS 195
                + S  S+L  +     +LA       G L  L+ L+   N +    +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
           +L  L LS N            L  +    ++L L +N ++  I P  F    +    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLR 208

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           +N+    +       L  L +  +   +F
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 10/211 (4%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFT--NEIPPQIGHLRRLQILYLQI 132
           + +  L   + K          +L  L+ LDL  N  +              L+ L L  
Sbjct: 325 KSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSL 191
           N     + ++      L  +    ++L      S F SL  L +L  +  +         
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 192 GNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFD 249
             LSSL  L ++ N F  +  PD F  L+NL  L L    L   + P  F ++SS+Q  +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 500

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           + SN ++  +P  +   L +L+   +  N +
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
            + S+       V     +     L+L N K     P     L  L++L   +N   N  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTL--KLKSLKRLTFTSNKGGN-- 339

Query: 116 PPQIGHLRRLQILYLQIN--SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL 173
                 L  L+ L L  N  SF G    S    ++L  + L+ N +   + S F  L +L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 174 QFLSTTANNLTGNIPSS-LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
           + L    +NL      S   +L +L  L +S      +    F GL +L  L +  N+  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 233 GTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
               P IF  + ++   D+    +E ++      +L +L++ ++  NQ  
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 5/166 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINSF 135
             LDL    +  T+  +   L  L+ LD ++++    +        LR L  L +     
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHT 433

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNL 194
                   +  S+L V+ +A N        + F  L  L FL  +   L    P++  +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           SSL+ L+++ N         F  L +L  + L  N    + P + +
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 15/212 (7%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             V+   L ++ +   +     N    Q L+L N  F      ++  L+RL     +  +
Sbjct: 282 TNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 135 FDGEIPASISNCSNLLVVSLALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
                  S  +  +L  + L+ N L+  G         + L++L  + N +   + S+  
Sbjct: 340 AF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 193 NLSSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFD 249
            L  L  L    +     + +   F  L+NL+ L +   +        IF  +SS++   
Sbjct: 394 GLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 451

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  N  +     D+ T L NL    ++  Q  
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 78  TILDLQNLKLA-GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI----LYLQI 132
             L++ +  +    LP +  NL+ L+ LDL +N   +     +  L ++ +    L L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTT------ANNLTG 185
           N  +  I         L  ++L  N  +  +       L+ L+             NL  
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 186 NIPSSLGNLSSLRGLSLSRNG---FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNI 242
              S+L  L +L            +   I D F  L N+ + SLV   +   +    +N 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN- 303

Query: 243 SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              Q  ++ +        L     L +L+  + T N+  
Sbjct: 304 FGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGG 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 171 SKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230
              + L  + N L      S  +   L+ L LSR          +  L +L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 231 LSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  ++    F  +SS+Q        +       +G  L  L+  ++  N   
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQ 137

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 4e-21
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 15/204 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L +   K+       I NL+ L  L L  N   +  P  +  L  L      +N    
Sbjct: 158 NYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P  ++N + L  + +  N +    P    +LS+L +L    N ++    +++ +L+ L
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKL 267

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
           + L++  N    S       L  L +L L  N L      +I  ++++ T  +  N+I  
Sbjct: 268 KMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
             PL    +L  +           
Sbjct: 326 IRPL---ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.9 bits (224), Expect = 6e-21
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
           +T L +   K+       I  L+ L+ L+L  N  T+  P  + +L +L  LY+  N   
Sbjct: 46  ITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI- 100

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
               +++ N +NL  + L  ++++    S   +L+K+  L+  AN+   ++ S L N++ 
Sbjct: 101 -TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDL-SPLSNMTG 156

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
           L  L+++ +      P     L +L +LSL  N +    P  + +++S+  F    N I 
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              P+     +  L    I  N+ T
Sbjct: 213 DITPVA---NMTRLNSLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L L    +  +    + NL+ +  L+L  N   +++ P + ++  L  L +  +    
Sbjct: 113 RELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P  I+N ++L  +SL  N +     S   SL+ L + +   N +T   P  + N++ L
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L +  N      P     L  L  L +  N +S      + +++ ++  +VGSN I  
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
              L+    L  L    +  NQ  
Sbjct: 280 ISVLN---NLSQLNSLFLNNNQLG 300

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 4e-19
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 16/204 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L      +    P    +L+   +  L+  S T+ +      L  +  L +       
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            I   I   +NL  ++L  N +    P    +L KL  L    N +T    S+L NL++L
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
           R L L+ +      P     L  + +L+L  N+    + PL  N++ +    V  + ++ 
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKD 169

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
             P+     L +L   S+  NQ  
Sbjct: 170 VTPIA---NLTDLYSLSLNYNQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 6e-19
 Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 16/204 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           T L +   K+  T    + NL+ L++L L  ++ ++  P  + +L ++  L L  N    
Sbjct: 91  TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN-L 145

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
              + +SN + L  +++  + +     +   +L+ L  LS   N +    P  L +L+SL
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSL 201

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
              +   N      P     +  L +L +  N ++   P  + N+S +   ++G+N I  
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
              +     L  L++ ++  NQ +
Sbjct: 258 INAV---KDLTKLKMLNVGSNQIS 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 6e-21
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 7/207 (3%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
             L+L    ++  + P    NL  L+ L LR+N     IP  +   L  L  L +  N  
Sbjct: 59  EELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNL 194
              +     +  NL  + +  N L   I    F  L+ L+ L+    NLT     +L +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
             L  L L           +F  L  L  L +       T+ P      ++ +  +    
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +   +P      L  LR  +++ N  +
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 12/207 (5%)

Query: 82  LQNLKLAG----TLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
           L++L++       +       L+ L++L L   + T  IP +   HL  L +L L+  + 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNL 194
           +     S      L V+ ++       +         L  LS T  NLT  +P  ++ +L
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL 247

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
             LR L+LS N            L  L  + LV   L+  + P  F  ++ ++  +V  N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQF 280
            +   +   +  ++ NL    +  N  
Sbjct: 307 QLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 46/217 (21%), Positives = 77/217 (35%), Gaps = 15/217 (6%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
            CS + + V        +    +P  I   +  + LDL  N        +      L+ L
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 129 YLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGN 186
            L  N     +     +N  NL  + L  N L   IP   F  LS L  L  + N +   
Sbjct: 62  ELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIF-NISS 244
           +     +L +L+ L +  N     I    F GL +L  L+L   NL+ +IP     ++  
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHG 177

Query: 245 IQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +    +    I   +       L  L++  I+   + 
Sbjct: 178 LIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQ-IGHLRRLQILYLQIN 133
            R+ +L++ +     T+ P+      L  L + + + T  +P   + HL  L+ L L  N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 134 SFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL 191
                I  S+      L  + L    LA  +    F  L+ L+ L+ + N LT    S  
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 192 GNLSSLRGLSLSRN 205
            ++ +L  L L  N
Sbjct: 317 HSVGNLETLILDSN 330

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 8e-21
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 14/211 (6%)

Query: 76  RVTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQIN 133
            + +L L    +   +       L+ L  L+L +N  T  IP     +L +L+ L+L+ N
Sbjct: 100 HLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN 157

Query: 134 SFDGEIPASI-SNCSNLLVVSLA-LNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSS 190
                IP+   +   +L+ + L  L  L   I    F  L  L++L+    N+  ++P+ 
Sbjct: 158 PI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN- 213

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFD 249
           L  L  L  L +S N F    P +F GL +L  L ++ + +S  I    F  ++S+   +
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELN 272

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           +  N +   +P DL T L  L    +  N +
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
           +CS +  +V         L+  +P  I   S  + L+L  N+          HL  L++L
Sbjct: 51  SCSNQFSKV---VCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104

Query: 129 YLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGN 186
            L  NS   +I     +  ++L  + L  N L   IPS  F  LSKL+ L    N +   
Sbjct: 105 QLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI 245
              +   + SL  L L        I    F GL NL  L+L + N+   +P L   +  +
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLT-PLVGL 220

Query: 246 QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  ++  N+   E+       L +L+   +  +Q +
Sbjct: 221 EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 14/207 (6%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
            IL L    +  T+       L+ L  L+L +N  T  IP     +L +L+ L+L+ N  
Sbjct: 91  EILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148

Query: 136 DGEIPASI-SNCSNLLVVSLA-LNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLG 192
           +  IP+   +   +L  + L  L  L+  I    F  LS L++L+    NL   IP+ L 
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT 204

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVG 251
            L  L  L LS N      P +F GL +L  L ++ + +   I    F N+ S+   ++ 
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLA 263

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGN 278
            N +   +P DL T L +L    +  N
Sbjct: 264 HNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 14/216 (6%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
           +CS +  +V         L   +P  I   +  + L+L  N           HLR L+IL
Sbjct: 40  SCSNQFSKV---ICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93

Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNI 187
            L  N        + +  +NL  + L  N L   IP+  F  LSKL+ L    N +  +I
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SI 151

Query: 188 PSSL-GNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI 245
           PS     + SLR L L        I    F GL NL  L+L + NL   IP L   +  +
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT-PLIKL 209

Query: 246 QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              D+  N++   +       L +L+   +  +Q  
Sbjct: 210 DELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
             L L+N  +  ++P +    +  L++LDL      + I       L  L+ L L + + 
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
             EIP  ++    L  + L+ NHL+   P  F  L  LQ L    + +     ++  NL 
Sbjct: 198 R-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
           SL  ++L+ N       D F  L +L  + L  N  
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 75  QRVTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN 133
             +  LDL  LK    +       LS L+ L+L   +      P +  L +L  L L  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGN 217

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                 P S     +L  + +  + +     + F +L  L  ++   NNLT         
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 194 LSSLRGLSLSRN 205
           L  L  + L  N
Sbjct: 278 LHHLERIHLHHN 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 3e-20
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 30/211 (14%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
            + + L L  L L+ +LP ++     +  L++  N+    +P     L  L     ++++
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYLDACDNRLST 114

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
               +P   ++  +L    +  N L   +P        L++++   N LT  +P    + 
Sbjct: 115 ----LPELPASLKHL---DVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTS- 161

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQT----FDV 250
             L  LS+  N     +P+    L+ L ++S    NL  ++P +       +     F  
Sbjct: 162 --LEVLSVRNNQL-TFLPELPESLEAL-DVS---TNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             N I   +P ++  +L       +  N  +
Sbjct: 215 RENRIT-HIPENIL-SLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 4e-15
 Identities = 40/192 (20%), Positives = 64/192 (33%), Gaps = 23/192 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             LD  + +L+ TLP    +L   + LD+ NN  T  +P     L  +     Q+     
Sbjct: 103 EYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPALLEYINADNNQLTM--- 154

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P   ++   L V+S+  N L   +P    SL  L  +S    NL  ++P+        
Sbjct: 155 -LPELPTS---LEVLSVRNNQL-TFLPELPESLEAL-DVS---TNLLESLPAVPVRNHHS 205

Query: 198 R----GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
                      N     IP+    L     + L  N LS +      +  + Q    G  
Sbjct: 206 EETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPR 263

Query: 254 YIEGEMPLDLGT 265
                      T
Sbjct: 264 IYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 16/145 (11%)

Query: 139 IPASISNCSNLLVVSL--ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
           I   I+N  +L   S    ++       S +    K        N     +   L  ++ 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
              L L+R     S+PD       +  L +  N L  ++P L    +S++  D   N + 
Sbjct: 61  FSELQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPEL---PASLEYLDACDNRLS 113

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
                 L     +L+   +  NQ T
Sbjct: 114 -----TLPELPASLKHLDVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 8/72 (11%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
                +  ++   +P +I +L     + L +N  ++ I   +         +     F  
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 138 EIPASISNCSNL 149
                 +    L
Sbjct: 269 SDGQQNTLHRPL 280

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.8 bits (220), Expect = 5e-20
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 30/204 (14%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L +   +L  +LP     L   Q+L + +N     +P     L +L     Q+ S   
Sbjct: 124 CKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSELCKLWAYNNQLTS--- 175

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P   S    L   S++ N LA  +P+    L KL   +   N LT ++P+    L  L
Sbjct: 176 -LPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLKEL 226

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
               +S N    S+P        L  L +  N L+ ++P L    S + +  V  N +  
Sbjct: 227 ---IVSGNRL-TSLPVLPS---ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT- 274

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
            +P  L   L +    ++ GN  +
Sbjct: 275 RLPESLIH-LSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 49/204 (24%), Positives = 73/204 (35%), Gaps = 32/204 (15%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
            +L++    L  TLP  +     +  L + +N+ T  +P     LR L++   Q+ S   
Sbjct: 43  AVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLEVSGNQLTS--- 95

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P        L + S  L HL           S L  L    N LT ++P     L   
Sbjct: 96  -LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQE- 145

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             LS+S N    S+P        L  L    N L+ ++P L    S +Q   V  N +  
Sbjct: 146 --LSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPML---PSGLQELSVSDNQLA- 194

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
                L T    L       N+ T
Sbjct: 195 ----SLPTLPSELYKLWAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 1e-18
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 33/204 (16%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L++   +L  +LP     L  L             +P     L +L I   Q+ S   
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFGNQLTS--- 135

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P        L   S++ N LA  +P+    L KL   +   N LT ++P     L   
Sbjct: 136 -LPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLWAYN---NQLT-SLPMLPSGLQE- 185

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             LS+S N    S+P     L  L   +   N L+ ++P L    S ++   V  N +  
Sbjct: 186 --LSVSDNQL-ASLPTLPSELYKLWAYN---NRLT-SLPAL---PSGLKELIVSGNRLT- 234

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
                L      L+   ++GN+ T
Sbjct: 235 ----SLPVLPSELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 28/181 (15%)

Query: 101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA 160
              L++  +  T  +P  +     +  L +  N+    +PA       L    ++ N L 
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT 94

Query: 161 GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220
             +P     L +L   S    +L           S L  L +  N    S+P    GL+ 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQL-TSLPVLPPGLQE 145

Query: 221 LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           L ++S   +N   ++P L    S +      +N +       L      L+  S++ NQ 
Sbjct: 146 L-SVS---DNQLASLPAL---PSELCKLWAYNNQLT-----SLPMLPSGLQELSVSDNQL 193

Query: 281 T 281
            
Sbjct: 194 A 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 16/167 (9%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L   N +L  +LP     L   ++L +  N  T  +P     L+ L +   ++ S   
Sbjct: 204 YKLWAYNNRLT-SLPALPSGL---KELIVSGNRLT-SLPVLPSELKELMVSGNRLTS--- 255

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P   S   +L   S+  N L  ++P     LS    ++   N L+     +L  ++S 
Sbjct: 256 -LPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 198 RGLS---LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN 241
            G S   +  +    S P     L       LV        P   ++
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 8/114 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L +   +L   LP  + +LS    ++L  N  +      +  +         I  FD 
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 138 EIPASISNCSNLLVVSLALNHLAG-------KIPSEFGSLSKLQFLSTTANNLT 184
              ++      L + +      A             FG        S   + L+
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 6e-20
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 7/208 (3%)

Query: 78  TILDLQN--LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
           T L L +  L   G         + L+ LDL  N     +      L +L+ L  Q ++ 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 113

Query: 136 DGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGN 193
                 S+  +  NL+ + ++  H        F  LS L+ L    N+   N        
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGS 252
           L +L  L LS+       P  F  L +L  L++  NN   ++    +  ++S+Q  D   
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSL 232

Query: 253 NYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           N+I      +L     +L   ++T N F
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 12/212 (5%)

Query: 77  VTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNN--SFTNEIPPQIGHLRRLQILYLQIN 133
            T L+L++ KL  +LP  +   L+ L KL L +N  SF             L+ L L  N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSE--FGSLSKLQFLSTTANNLTGNIPSSL 191
                + ++      L  +    ++L  ++     F SL  L +L  +  +         
Sbjct: 89  GV-ITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 192 GNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFD 249
             LSSL  L ++ N F  +  PD F  L+NL  L L    L   + P  F ++SS+Q  +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  N     +       L +L++   + N   
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT--GNIPSSLGNLS 195
            +P  I   S+   + L  N L       F  L++L  LS ++N L+  G    S    +
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNY 254
           SL+ L LS NG   ++   F GL+ L +L    +NL       +F ++ ++   D+   +
Sbjct: 79  SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280
                   +   L +L +  + GN F
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSF 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 14/208 (6%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
            R  I  + +  L   L     +   +++LDL  N  +      +    +L++L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
              E    + + S L  + L  N++      E      ++ L    NN++  +  S    
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS--RG 119

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG-TIPPLIFNISSIQTFDVGSN 253
              + + L+ N          G    +  L L +N +       L  +  +++  ++  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     +        L+   ++ N+  
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 82  LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA 141
           L+ L L       +     ++ L   NN+ +  +       +  + +YL  N        
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDL 138

Query: 142 SISNCSNLLVVSLALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGL 200
                S +  + L LN +          S   L+ L+   N +  ++   +   + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260
            LS N     +   F     +  +SL  N L   I   +    +++ FD+  N       
Sbjct: 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 261 LDLGTTLPNLRIFSITGNQFT 281
            D      N R+ ++      
Sbjct: 255 RDF--FSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 10/187 (5%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
             N +  +   + ++S    +         ++ L L  N       A ++  + L +++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L      +  SLS L+ L     +L  N    L    S+  L  + N     +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI-SRVS-- 115

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
               +   N+ L  N ++          S +Q  D+  N I+     +L  +   L   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 275 ITGNQFT 281
           +  N   
Sbjct: 176 LQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 72  PRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ 131
                +  L   N  ++  +          + + L NN  T       G   R+Q L L+
Sbjct: 96  LVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 132 INSFDG-EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
           +N  D        ++   L  ++L  N +   +  +    +KL+ L  ++N L   +   
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPE 209

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
             + + +  +SL  N     I       +NL +  L  N          F
Sbjct: 210 FQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 11/143 (7%)

Query: 139 IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLR 198
           I     N +   +  +  + L   + S   S   ++ L  + N L+    + L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE 258
            L+LS N  Y    D    L  L  L L  N +   +        SI+T    +N I   
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-R 113

Query: 259 MPLDLGTTLPNLRIFSITGNQFT 281
           +           +   +  N+ T
Sbjct: 114 VSCS---RGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
            ++  LDL + KLA  + P   + + +  + LRNN     I   +   + L+   L+ N 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
           F            N  V ++A   +  K+  +      +  L         ++P+     
Sbjct: 249 FH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA-- 304

Query: 195 SSLRGLSLSRNGF 207
              R ++L  +  
Sbjct: 305 --DRLIALGHHHH 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 18/205 (8%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
           VT L    L +       +  L+ L +++  NN  T+  P  + +L +L  + +  N   
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
              P  ++N +NL  ++L  N +         +L+ L  L  ++N ++    S+L  L+S
Sbjct: 104 DITP--LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTS 157

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
           L+ LS        +       L  L  L +  N +S     ++  ++++++    +N I 
Sbjct: 158 LQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              PL     L NL   S+ GNQ  
Sbjct: 213 DITPLG---ILTNLDELSLNGNQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 17/204 (8%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L   N ++  +    +G L+ L +L L  N   +     +  L  L  L L  N    
Sbjct: 202 ESLIATNNQI--SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P  +S  + L  + L  N ++    S    L+ L  L    N L    P  + NL +L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L+L  N      P     L  L  L    N +S      + N+++I     G N I  
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
             PL     L  +    +    +T
Sbjct: 368 LTPL---ANLTRITQLGLNDQAWT 388

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 18/205 (8%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
                L    +  T+     +L  +  L        +     + +L  L  +    N   
Sbjct: 26  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT 81

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
              P  + N + L+ + +  N +     +   +L+ L  L+   N +T      L NL++
Sbjct: 82  DITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTN 135

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
           L  L LS N    S      GL +L  LS   N ++   P  + N+++++  D+ SN + 
Sbjct: 136 LNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS 190

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
               L     L NL     T NQ +
Sbjct: 191 DISVLA---KLTNLESLIATNNQIS 212

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 15/197 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L L   +L       + +L+ L  LDL NN  +N  P  +  L +L  L L  N    
Sbjct: 224 DELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P  ++  + L  + L  N L     S   +L  L +L+   NN++   P  + +L+ L
Sbjct: 280 ISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
           + L    N    S   +   L N+  LS   N +S   P  + N++ I    +       
Sbjct: 334 QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 258 EMPLDLGTTLPNLRIFS 274
             P++    +       
Sbjct: 390 A-PVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
              L+   K  L   + T+ +      L ++  L         +    +   +NL  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L    P    +L+KL  +    N +     + L NL++L GL+L  N    +  D 
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDP 129

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
              L NL  L L  N +S      +  ++S+Q      N +    PL     L  L    
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKPLA---NLTTLERLD 183

Query: 275 ITGNQFT 281
           I+ N+ +
Sbjct: 184 ISSNKVS 190

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 14/180 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           T L L   +++   P  +  L+ L  L+L  N   +  P  I +L+ L  L L  N+   
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P  +S+ + L  +    N +     S   +L+ + +LS   N ++   P  L NL+ +
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPL-IFNISSIQTFDVGSNYIE 256
             L L+   +  +  +      N+   + V N     I P  I +  S    D+  N   
Sbjct: 378 TQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 11/140 (7%)

Query: 142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201
           + +  +  +   L   ++   +      L ++  L      +       +  L++L  ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPL 261
            S N      P     L  LV++ +  N ++   P  + N++++    + +N I    PL
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL 130

Query: 262 DLGTTLPNLRIFSITGNQFT 281
                L NL    ++ N  +
Sbjct: 131 ---KNLTNLNRLELSSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L   N K+  +    + NL+ +  L   +N  ++  P  + +L R+  L L   ++  
Sbjct: 334 QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
                 +N S    V      L    P+             T N  +          S  
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT-NEVSYTFSQP 446

Query: 198 RGLSLSRNGFYGSIP 212
             +      F G++ 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 4e-19
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 10/187 (5%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
             N +  +   + ++S    +         ++ L L  N       A ++  + L +++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L      +  SLS L+ L     +L  N    L    S+  L  + N     +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI-SRVS-- 115

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
               +   N+ L  N ++          S +Q  D+  N I+     +L  +   L   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 275 ITGNQFT 281
           +  N   
Sbjct: 176 LQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 4e-19
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 14/208 (6%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
            R  I  + +  L   L     +   +++LDL  N  +      +    +L++L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
                   + + S L  + L  N++      E      ++ L    NN++  +  S    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS--RG 119

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
              + + L+ N          G    +  L L +N +       +  +  +++  ++  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     +        L+   ++ N+  
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 24/212 (11%), Positives = 54/212 (25%), Gaps = 12/212 (5%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             +  L+LQ   +   +   +   + L+ LDL +N     + P+      +  + L+ N 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 135 FDGEIPASISNCSNLLVVSLALNHLA-GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
               I  ++    NL    L  N    G +   F    ++Q ++     +      +   
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEE 282

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG----TIPPLIFNISSIQTFD 249
            +                      L  L      + +  G     +     N +  +  D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                    +   +                  
Sbjct: 343 ALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 6/177 (3%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             VT + L+N KL   +   +     L+  DLR N F +    +    +  ++  +   +
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQT 271

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN----IPSS 190
                  +   C+   +                  L  L+       +  G+    +   
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQT 247
             N +  R +   +  +   I       +  + L      L   +       + +  
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 11/143 (7%)

Query: 139 IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLR 198
           I     N +   +  +  + L   + S   S   ++ L  + N L+    + L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE 258
            L+LS N  Y    D    L  L  L L  N +   +        SI+T    +N I   
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELLVG----PSIETLHAANNNIS-R 113

Query: 259 MPLDLGTTLPNLRIFSITGNQFT 281
           +           +   +  N+ T
Sbjct: 114 VSCS---RGQGKKNIYLANNKIT 133

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 11/185 (5%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL 156
                    L  +S  N    Q+  L  + +  + +    G     I    N+  +++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75

Query: 157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG 216
            H      +    LS L+ L     ++T +   +L  L+SL  L +S +    SI     
Sbjct: 76  IHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 217 GLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276
            L  + ++ L  N     I PL   +  +++ ++  + +     ++     P L      
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAF 189

Query: 277 GNQFT 281
                
Sbjct: 190 SQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
           I     ++ L + N   TN  P  I  L  L+ L +       +   ++S  ++L ++ +
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + +     I ++  +L K+  +  + N    +I   L  L  L+ L++  +G +      
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 215 FGGLKNLVNLSLVVNNLSG 233
                 L  L      + G
Sbjct: 177 IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L + N+      P  I  LS L++L +     T++  P +  L  L +L +  ++ D 
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            I   I+    +  + L+ N     I     +L +L+ L+   + +  +    + +   L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DY-RGIEDFPKL 183

Query: 198 RGLSLSRN 205
             L     
Sbjct: 184 NQLYAFSQ 191

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 76  RVTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQIN 133
            +TIL L +  LA  +       L+ L++LDL +N+    + P     L RL  L+L   
Sbjct: 57  NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 134 SFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL 191
               E+   +    + L  + L  N L   +P + F  L  L  L    N ++     + 
Sbjct: 116 GL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDV 250
             L SL  L L +N      P  F  L  L+ L L  NNLS  +P      + ++Q   +
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

Query: 251 GSN 253
             N
Sbjct: 233 NDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 35/239 (14%)

Query: 70  CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILY 129
           C   ++           L   +P  I   +  Q++ L  N  ++         R L IL+
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 130 LQIN--------SFDG----------------EIPASI-SNCSNLLVVSLALNHLAGKIP 164
           L  N        +F G                 +  +       L  + L    L  ++ 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 165 SE-FGSLSKLQFLSTTANNLTGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222
              F  L+ LQ+L    N L   +P  +  +L +L  L L  N         F GL +L 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 223 NLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
            L L  N ++  + P  F ++  + T  + +N +   +P +    L  L+   +  N +
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P  I   +    + L  N ++    + F +   L  L   +N L     ++   L+ L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 198 RGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYI 255
             L LS N    S+   TF GL  L  L L    L   + P +F  ++++Q   +  N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +P D    L NL    + GN+ +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRIS 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 4e-17
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 20/225 (8%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
           +CS   +   I   +   L   +P     L+  ++L L  N            L +LQ+L
Sbjct: 1   SCSFDGR---IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 129 YLQINSFDGEI-PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI 187
            L        I   +  N  NL ++ L  + +    P  F  L  L  L      L+  +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 188 --PSSLGNLSSLRGLSLSRNGFYG-SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN--- 241
                  NL +L  L LS+N      +  +FG L +L ++    N +   +         
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQ 172

Query: 242 ISSIQTFDVGSNYIEGEMPLDLGTTL-----PNLRIFSITGNQFT 281
             ++  F + +N +   + +D G  +       L I  ++GN +T
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 23/258 (8%)

Query: 44  KITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQK 103
            + +      G   +         +  S     V I    +  ++ +    +     +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 104 LDLRNNSFTNEIPPQIGHLRR--LQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG 161
                ++  +        L R  ++ L L                 +L V++LA N +  
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221
                F  L  LQ L+ + N L     S+   L  +  + L +N        TF  L+ L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 222 VNLSLVVNNLS------------------GTIPPLIFNISSIQTFDVGSNYIEGEMPLDL 263
             L L  N L+                   T+P +     +     +  N +E    L  
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL---TANLIHLSENRLENLDILYF 421

Query: 264 GTTLPNLRIFSITGNQFT 281
              +P+L+I  +  N+F+
Sbjct: 422 LLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 19/214 (8%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
            +V  +DLQ   +A         L  LQ LDLR+N+ T      I  +  +  ++L  N 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNK 392

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGN 193
               +P      + + +    L +L   I      +  LQ L    N  +  +   +   
Sbjct: 393 L-VTLPKINLTANLIHLSENRLENL--DILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 194 LSSLRGLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQT 247
             SL  L L  N    +       D F GL +L  L L  N L+ ++PP +F ++++++ 
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRG 508

Query: 248 FDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             + SN +     L       NL I  I+ NQ  
Sbjct: 509 LSLNSNRLTV---LSHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 13/180 (7%)

Query: 82  LQNLKLAGTLPPHIGNLSF-LQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFDG-E 138
           + ++ L+G     +  ++     + L  N   N +I   +  +  LQIL L  N F    
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 139 IPASISNCSNLLVVSLALNHLAGKIPSE-----FGSLSKLQFLSTTANNLTGNIPSSLGN 193
              + S   +L  + L  N L     +E     F  LS LQ L    N L    P    +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L++LRGLSL+ N       +      NL  L +  N L     P +F   S+   D+  N
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPDVF--VSLSVLDITHN 557

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 19/204 (9%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L L + +L   +      +  L   ++  N  +      +     ++ L    NS + 
Sbjct: 168 QNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN- 218

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +   +     L ++ L  N+L     +   +   L  +  + N L   +      +  L
Sbjct: 219 VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L +S N    ++      +  L  L L  N+L   +         ++   +  N I  
Sbjct: 275 ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
            + L    T   L+  +++ N + 
Sbjct: 332 TLKLS---THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 18/205 (8%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
           T L + N  L   +        + LQ L L +N  T  +      +  L    +  N   
Sbjct: 144 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS 199

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
                +++    +  +  + N +   +        +L  L    NNLT    + L N   
Sbjct: 200 -----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPG 249

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
           L  + LS N     +   F  ++ L  L +  N L   +      I +++  D+  N++ 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
             +  +       L    +  N   
Sbjct: 309 -HVERNQP-QFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGE 138
           + +               L+  + +  +N++   ++P  +    R++++L L     + E
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 83

Query: 139 IPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           I     +    +  + +  N +    P  F ++  L  L    N+L+        N   L
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             LS+S N       DTF    +L NL L  N L+  +   +    S+   +V  N +  
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS- 199

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
                       +     + N   
Sbjct: 200 -----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 90  TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNL 149
            +  ++        + +   +       +   L   +I+  + ++      A + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209
            +++L    +       F     +Q L    N +    P    N+  L  L L RN    
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLP 268
                F     L  LS+  NNL   I    F   +S+Q   + SN +     +DL   +P
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLS-LIP 186

Query: 269 NLRIFSITGNQFT 281
           +L   +++ N  +
Sbjct: 187 SLFHANVSYNLLS 199

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 4e-16
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 6/206 (2%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
            + D ++     ++P  +   + ++ LDL  N  T      +     LQ+L L+ +  + 
Sbjct: 8   GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSS 196
               +  +  +L  + L+ NHL+    S FG LS L++L+   N      + S   NL++
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 197 LRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255
           L+ L +     +  I    F GL +L  L +   +L       + +I  I    +  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
              +       L ++R   +      
Sbjct: 185 A-FLLEIFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 16/210 (7%)

Query: 76  RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQ---IGHLRRLQILYLQI 132
           +V  + ++N K+         +L  L+ LDL  N    E        G    LQ L L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 133 NSFD--GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
           N      +    +    NL  + ++ N     +P       K++FL+ ++  +   + + 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT- 427

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250
                +L  L +S N    ++      L  L  L +  N L  T+P        +    +
Sbjct: 428 -CIPQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKI 480

Query: 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
             N ++  +P  +   L +L+   +  N +
Sbjct: 481 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 16/210 (7%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
           +  L +    L   L      L  ++++ + N+           HL+ L+ L L    + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSL 191
               +  A      +L  + L+ NHL    K      +L  L  L  + N     +P S 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
                +R L+LS  G    +       + L  L +  NNL  +       +  +Q   + 
Sbjct: 407 QWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYIS 459

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            N ++    L   +  P L +  I+ NQ  
Sbjct: 460 RNKLKT---LPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 19/223 (8%)

Query: 78  TILDLQNLKLAG-TLPPHIGNLSFLQKLDLRNNSFTNEIPPQ-IGHLRRLQILYLQINSF 135
             L+L         +     NL+ LQ L + N    +EI       L  L  L ++  S 
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
                 S+ +  ++  ++L L+  A  +      LS +++L     NL     S L    
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 196 SLRGLSLSRN-------GFYGSIPDTFGGLKNLVNLSLV------VNNLSGTIPPLIFNI 242
               +              +  +      +  L  +         + + + +   ++  +
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 243 SSIQTFDVGSNYIEG----EMPLDLGTTLPNLRIFSITGNQFT 281
             ++T  +   +I           + + L  ++  ++  ++  
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 22/229 (9%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS--------FTNEIPPQIGHLRRLQ 126
           + +  L L   + A  L      LS ++ L+LR+ +           +           +
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 127 ILYLQINSFDG--EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA---- 180
              L   SF+   ++   I   S +      LN L    PSE   +S+L  + T      
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 181 ----NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
                 L  ++ +    L  ++ +++  +  +         LK+L  L L  N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 237 P---LIFNISSIQTFDVGSNYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
                     S+QT  +  N++   +   ++  TL NL    I+ N F 
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 76  RVTILDLQN---LKLAGTLPPHIGNLSFLQKLDLRNNSFTN--EIPPQIGHLRRLQILYL 130
            +  LDL     ++         G    LQ L L  N   +  +    +  L+ L  L +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 131 QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
             N+F   +P S      +  ++L+   +   + +       L+ L  + NNL  +    
Sbjct: 395 SRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLF 449

Query: 191 LGNL-------------------SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
           L  L                     L  + +SRN         F  L +L  + L  N  
Sbjct: 450 LPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 232 SGTIPPLIF 240
             + P + +
Sbjct: 510 DCSCPRIDY 518

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 6e-16
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 19/204 (9%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L L + +L   +      +  L   ++  N  +      +     ++ L    NS + 
Sbjct: 174 QNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN- 224

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +   +     L ++ L  N+L     +   +   L  +  + N L   +      +  L
Sbjct: 225 VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L +S N    ++      +  L  L L  N+L   +         ++   +  N I  
Sbjct: 281 ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
            + L    T   L+  +++ N + 
Sbjct: 338 TLKLS---THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGE 138
           + +               L+  + +  +N++   ++P  +    R++++L L     + E
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 139 IPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           I     +    +  + +  N +    P  F ++  L  L    N+L+        N   L
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             LS+S N       DTF    +L NL L  N L+  +   +    S+   +V  N +  
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS- 205

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
                       +     + N   
Sbjct: 206 -----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 90  TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNL 149
            +  ++        + +   +       +   L   +I+  + ++      A + +   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209
            +++L    +       F     +Q L    N +    P    N+  L  L L RN    
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLP 268
                F     L  LS+  NNL   I    F   +S+Q   + SN +     +DL   +P
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLS-LIP 192

Query: 269 NLRIFSITGNQFT 281
           +L   +++ N  +
Sbjct: 193 SLFHANVSYNLLS 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 38/217 (17%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             +   N  L     P + NL FL  +   NN     +P     L  L +    +     
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD--- 271

Query: 138 EIPASISNCSNLLVVSLALNHLAG-------------KIPSEFGSLSKLQFLSTTANNLT 184
            +P    + + L V     + L+              +I S       L+ L+ + N L 
Sbjct: 272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

Query: 185 GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISS 244
             +P+    L     L  S N     +P+     +NL  L +  N L    P +  ++  
Sbjct: 331 -ELPALPPRLER---LIASFNHL-AEVPEL---PQNLKQLHVEYNPLR-EFPDIPESVED 381

Query: 245 IQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           ++     ++++      ++     NL+   +  N   
Sbjct: 382 LRM----NSHLA-----EVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 41/235 (17%), Positives = 73/235 (31%), Gaps = 46/235 (19%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSF-------------LQKLDLRNNSFTNEIPPQIGH 121
           +  T       +     PP  G                   +L+L N   +  +P    H
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH 92

Query: 122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPS---------------E 166
           L  L      +      +P    +  +LLV +  L  L+   P                E
Sbjct: 93  LESLVASCNSLTE----LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 167 FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226
             + S L+ +    N+L   +P    +L     ++   N     +P+    L  L  +  
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQL-EELPE-LQNLPFLTAIYA 202

Query: 227 VVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             N+L   +P L  +   +++   G+N +  E   +L   LP L       N   
Sbjct: 203 DNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQ-NLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 32/204 (15%)

Query: 90  TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG------------ 137
            +P    N+    +     + +    PP  G  R + +  L+                  
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P    +  +L     + N L  ++P    SL  L   +     L+   P        L
Sbjct: 85  SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LL 133

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L +S N     +P+       L  + +  N+L   +P L     S++    G+N +E 
Sbjct: 134 EYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE- 186

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
           E+P +L   LP L       N   
Sbjct: 187 ELP-ELQ-NLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             L++ N KL   LP     L   ++L    N    E+P    +L++L + Y  +     
Sbjct: 320 EELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQLHVEYNPLRE--- 371

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
             P    +  +L      +N    ++P        L+ L    N L    P    ++  L
Sbjct: 372 -FPDIPESVEDLR-----MNSHLAEVPEL---PQNLKQLHVETNPLR-EFPDIPESVEDL 421

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
               ++                 L +     ++  
Sbjct: 422 ---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 10/179 (5%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           TIL L    L       +   + L +L+L     T       G L  L  L L  N    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ- 90

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL-GNLS 195
            +P        L V+ ++ N L   +P      L +LQ L    N L   +P  L     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148

Query: 196 SLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
            L  LSL+ N     +P     GL+NL  L L  N+L  TIP   F    +    +  N
Sbjct: 149 KLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 10/178 (5%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
             ++     L   LPP +        L L  N         +    RL  L L       
Sbjct: 13  LEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-T 68

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           ++         L  + L+ N L   +P    +L  L  L  + N LT     +L  L  L
Sbjct: 69  KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 198 RGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
           + L L  N    ++P         L  LSL  NNL+  +P  +   + ++ T  +  N
Sbjct: 127 QELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 4e-15
 Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 30/215 (13%)

Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSF-----LQKLDLRNNSFTNEIPPQIGHLRRLQI 127
               + IL+L+N+  A      +  L       L+ L +      N    Q+     L  
Sbjct: 119 TGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI 187
           L L  N   GE     + C                 P +F +L  L   +      +G  
Sbjct: 178 LDLSDNPELGERGLISALC-----------------PLKFPTLQVLALRNAGMETPSGVC 220

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246
            +       L+GL LS N    +    +      L +L+L    L   +P  +   + + 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             D+  N ++          LP +   S+ GN F 
Sbjct: 278 VLDLSYNRLDR---NPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 9e-13
 Identities = 34/218 (15%), Positives = 62/218 (28%), Gaps = 16/218 (7%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHL---RRLQILYLQINSFD 136
           L   + +        I     L++L +R     + I      +     LQ L L+     
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEF------GSLSKLQFLSTTANNLTGNIPSS 190
           G  P  +   +   +  L L +++      +           L+ LS    +        
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 191 LGNLSSLRGLSLSRNGFYGSI-------PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS 243
           +    +L  L LS N   G         P  F  L+ L   +  +   SG    L     
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 244 SIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +Q  D+  N +              L   +++     
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 27/164 (16%)

Query: 74  HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI-------PPQIGHLRRLQ 126
              + +L +            +     L  LDL +N    E        P +   L+ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 127 ILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLT- 184
           +    + +  G   A  +    L  + L+ N L     +      S+L  L+ +   L  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 185 --GNIPSSL----------------GNLSSLRGLSLSRNGFYGS 210
               +P+ L                  L  +  LSL  N F  S
Sbjct: 268 VPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 12/194 (6%)

Query: 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL 159
            L+++D   +        +   L+RL +   +I S        +   S L  ++L    +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 160 AGKIPSEFGSLSKLQFLSTTANNLT----GNIPSSLGNLS--SLRGLSLSRNGFYGSIPD 213
            G  P      +          N++        + L       L+ LS+++        +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPLI----FNISSIQTFDVGSNYIE--GEMPLDLGTTL 267
                  L  L L  N   G    +         ++Q   + +  +E    +   L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 268 PNLRIFSITGNQFT 281
             L+   ++ N   
Sbjct: 228 VQLQGLDLSHNSLR 241

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 32/230 (13%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYL---QI 132
             +LDLQN K+         NL  L  L L NN  +  I P     L +L+ LYL   Q+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQL 112

Query: 133 NSFDGEIPASI------------------SNCSNLLVVSLALNHL-AGKIPSE-FGSLSK 172
                ++P ++                  +  + ++VV L  N L +  I +  F  + K
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
           L ++     N+T  IP  L    SL  L L  N        +  GL NL  L L  N++S
Sbjct: 173 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 233 GTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             +      N   ++   + +N +  ++P  L      +++  +  N  +
Sbjct: 230 -AVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 22/213 (10%)

Query: 82  LQNLKLAG----TLPPHI-GNLSFLQKLDLRNNSFTNE-IPPQI-GHLRRLQILYLQINS 134
           LQ L++       +   +   L+ +  ++L  N   +  I       +++L  + +   +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGN 193
               IP  +    +L  + L  N +  K+ +     L+ L  L  + N+++     SL N
Sbjct: 183 IT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-------NISSIQ 246
              LR L L+ N     +P      K +  + L  NN+S  I    F         +S  
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296

Query: 247 TFDVGSNYIE-GEMPLDLGTTLPNLRIFSITGN 278
              + SN ++  E+       +       +   
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           ++P  +    +  ++ L  N +      +F +L  L  L    N ++   P +   L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIE 256
             L LS+N     +P+     K L  L +  N ++  +   +F  ++ +   ++G+N ++
Sbjct: 103 ERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 257 GEMPLDLGT--TLPNLRIFSITGNQFT 281
               ++ G    +  L    I     T
Sbjct: 159 -SSGIENGAFQGMKKLSYIRIADTNIT 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 7e-15
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
               +L+   +   +      L+ + ++   N+   + +   I +L  +  L+L   ++ 
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT 78

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                    ++N  NL  + L  N +   + S    L KL+ LS   N ++ +I + L +
Sbjct: 79  DIKP-----LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVH 129

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L  L  L L  N    +       L  L  LSL  N +S  I PL   ++ +Q   +  N
Sbjct: 130 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKN 185

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     L     L NL +  +   +  
Sbjct: 186 HISDLRAL---AGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 6e-14
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLVVS 153
             +   K +L+  S T+ +      L  +  +      I S  G     I    N+  + 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLF 71

Query: 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           L  N L   I     +L  L +L    N +  ++ SSL +L  L+ LSL  NG   S  +
Sbjct: 72  LNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI--SDIN 125

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF 273
               L  L +L L  N ++  I  L   ++ + T  +  N I   +PL     L  L+  
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLA---GLTKLQNL 180

Query: 274 SITGNQFT 281
            ++ N  +
Sbjct: 181 YLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
           +  +   N  +  ++   I  L  + KL L  N  T+ I P + +L+ L  L+L   +I 
Sbjct: 45  IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK 100

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                    + +   L  +SL  N ++  I      L +L+ L    N +T    + L  
Sbjct: 101 DLSS-----LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSR 151

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L+ L  LSL  N     I     GL  L NL L  N++S  +  L   + ++   ++ S 
Sbjct: 152 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRAL-AGLKNLDVLELFSQ 207

Query: 254 YIEGEMPLDLG--TTLPNLRIFSIT 276
               +             ++    +
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 22/200 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINS 134
           T L L   KL    P  + NL  L  L L  N   + +   +  L++L+ L L    I+ 
Sbjct: 68  TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNGISD 123

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
            +G     + +   L  + L  N +     +    L+KL  LS   N ++ +I   L  L
Sbjct: 124 ING-----LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DI-VPLAGL 174

Query: 195 SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGS 252
           + L+ L LS+N     I D     GLKNL  L L              N+    T     
Sbjct: 175 TKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 253 NYIEGEMPLDLGTTLPNLRI 272
             +     +          +
Sbjct: 231 GSLVTPEIISDDGDYEKPNV 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 35/231 (15%)

Query: 77  VTILDLQNLKLAGTLPPH-IGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYL---Q 131
            T+LDLQN  ++  L       L  L  L L NN  +  I  +    LR+LQ LY+    
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNH 113

Query: 132 INSFDGEIPASI------------------SNCSNLLVVSLALNHLA-GKIPSEFGSLSK 172
           +      +P+S+                  S   N+  + +  N L             K
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231
           L +L  +   LT  IP  L    +L  L L  N    +I          L  L L  N +
Sbjct: 174 LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQI 229

Query: 232 SGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              I       + +++   + +N +   +P  L   L  L++  +  N  T
Sbjct: 230 R-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 21/214 (9%)

Query: 81  DLQNLKLAG----TLPPHI-GNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQINS 134
            L  L++       +P  +   L  +  +++  N   N    P      +L  L +    
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGN 193
               IP  +     L  + L  N +   I  E     SKL  L    N +      SL  
Sbjct: 184 LT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-------NISSIQ 246
           L +LR L L  N     +P     LK L  + L  NN++  +    F         +   
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 247 TFDVGSNYIE-GEMPLDLGTTLPNLRIFSITGNQ 279
              + +N +   E+       + +         +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
            +P  IS   +  ++ L  N ++     +F  L  L  L    N ++     +   L  L
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIE 256
           + L +S+N     IP       +LV L +  N +   +P  +F  + ++   ++G N +E
Sbjct: 105 QKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 257 GEMPLDLGT-TLPNLRIFSITGNQFT 281
                + G      L    I+  + T
Sbjct: 161 -NSGFEPGAFDGLKLNYLRISEAKLT 185

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 67  GVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQ 126
            ++C        I    +  L  ++P  +     ++ LDL NN  T      +     LQ
Sbjct: 27  SLSCDRN----GICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQ 79

Query: 127 ILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLT 184
            L L  N  +  I     S+  +L  + L+ N+L+  + S  F  LS L FL+   N   
Sbjct: 80  ALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 185 GNIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIF-N 241
               +SL  +L+ L+ L +     +  I    F GL  L  L +  ++L  +  P    +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKS 196

Query: 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           I ++    +        +         ++    +      
Sbjct: 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 15/188 (7%)

Query: 78  TILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINS 134
           T L+L       TL       +L+ LQ L + N     +I  +    L  L+ L +  + 
Sbjct: 127 TFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN-------- 186
                P S+ +  N+  + L +      +       S ++ L     +L           
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSI 245
             +SL    + R + ++    +  +      +  L+ L    N L  ++P  IF  ++S+
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303

Query: 246 QTFDVGSN 253
           Q   + +N
Sbjct: 304 QKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 12/162 (7%)

Query: 80  LDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN----- 133
           L + N+     +       L+FL++L++  +   +  P  +  ++ +  L L +      
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 134 ---SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
                D           +  + +   + L+    +        + +  T  +L   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 191 LGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231
           L  +S L  L  SRN    S+PD  F  L +L  + L  N  
Sbjct: 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 6e-13
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 53  LGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFT 112
               +D               +  V +L L +  L  T+  H+  L  +  LDL +N   
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR 476

Query: 113 NEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLVVSLALNHLAG-KIPSEFG 168
             +PP +  LR L++L      + + DG     ++N   L  + L  N L          
Sbjct: 477 -ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 169 SLSKLQFLSTTANNLT 184
           S  +L  L+   N+L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 9/211 (4%)

Query: 71  SPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL 130
           S   +++   +L   K    L   + +   LQ+L+  N      I   I  +R L  L  
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLY 400

Query: 131 QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
           +  +          +      +    +    +        + ++ L     +LT  +   
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCH 458

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250
           L  L  +  L LS N    ++P     L+ L  L    N L   +  +  N+  +Q   +
Sbjct: 459 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDGVA-NLPRLQELLL 515

Query: 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +N ++    +    + P L + ++ GN   
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 5e-08
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 13/203 (6%)

Query: 73  RHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI 132
             + +  L+ +N     T+   +  L  L         F+      +  +  ++  YL  
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-----LKAVDPMRAAYLDD 424

Query: 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192
                 +  S+       V  L L H    +      L  +  L  + N L   +P +L 
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALA 483

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPL--IFNISSIQTFDV 250
            L  L  L  S N    ++      L  L  L L  N L      +  + +   +   ++
Sbjct: 484 ALRCLEVLQASDNAL-ENVDG-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNL 540

Query: 251 GSNYIEGEMPL--DLGTTLPNLR 271
             N +  E  +   L   LP++ 
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSVS 563

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 8/181 (4%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
           + I +                +S    LD  NN  T+ +    GHL  L+ L LQ+N   
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 137 --GEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGN 193
              +I    +   +L  + ++ N ++             L  L+ ++N LT  I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGS 252
              ++ L L  N    SIP     L+ L  L++  N L  ++P  IF  ++S+Q   + +
Sbjct: 420 PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

Query: 253 N 253
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 9e-11
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 12/214 (5%)

Query: 79  ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHL---RRLQILYLQINSF 135
           +L+        ++   +     L  L L N   T     +I  L     +    +     
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKI-----PSEFGSLSKLQFLSTTANNLTGNIPSS 190
            G++     + S   + +L+++ +   +        +   S +   + T +         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF---NISSIQT 247
              +S    L  S N    ++ +  G L  L  L L +N L   +  +      + S+Q 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 248 FDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            D+  N +  +      +   +L   +++ N  T
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 68  VTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG---HLRR 124
           + C  +      LD  N  L  T+  + G+L+ L+ L L+ N     +         ++ 
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKS 375

Query: 125 LQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL 183
           LQ L +  NS   +      S   +LL ++++ N L   I        +++ L   +N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 184 TGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231
             +IP  +  L +L+ L+++ N    S+PD  F  L +L  + L  N  
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 104 LDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKI 163
           +D   N     +P  +   ++  IL +  N       + I + S L ++ ++ N +    
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 164 PSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT--FGGLKNL 221
            S F    +L++L  + N L   I        +L+ L LS N  + ++P    FG +  L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFN-AFDALPICKEFGNMSQL 117

Query: 222 VNLSLVVNNLSGTIPPLIFNISSIQTF-DVGSNYIEGEMPLDL-GTTLPNLRIFSITGNQ 279
             L L   +L  +    I +++  +    +G  Y E E P  L      +L I   T  +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 280 FT 281
           F 
Sbjct: 178 FH 179

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
            TIL++    ++      I +LS L+ L + +N     +   +    + L+ L L  N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 136 DGEIPASISNCSNLLVVSLALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
                 S     NL  + L+ N      I  EFG++S+L+FL  +  +L  +    + +L
Sbjct: 82  VK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
           +  + L +    +         GL++    SL +   +      I ++S     ++  + 
Sbjct: 139 NISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 255 IEGEMPLDLGTTLPNL 270
           I+  +  +  +   ++
Sbjct: 197 IKCVLEDNKCSYFLSI 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 23/210 (10%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---Q 131
             +T L      +  T    +  L+ L  L+L++N  T+ + P + +L ++  L L    
Sbjct: 41  DGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP 96

Query: 132 INSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL 191
           + +        I+   ++  + L    +    P     LS LQ L    N +T NI S L
Sbjct: 97  LKNVSA-----IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPL 147

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVG 251
             L++L+ LS+       S       L  L  L    N +S  I PL  ++ ++    + 
Sbjct: 148 AGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISPLA-SLPNLIEVHLK 203

Query: 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +N I    PL       NL I ++T    T
Sbjct: 204 NNQISDVSPLA---NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLVVS 153
            L+   K+    ++ T+ +      L  +  L      + + +G     +   +NL+ + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69

Query: 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           L  N +     +   +L+K+  L  + N L     S++  L S++ L L+        P 
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF 273
              GL NL  L L +N ++  I PL   ++++Q   +G+  +    PL     L  L   
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NISPL-AGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTL 178

Query: 274 SITGNQFT 281
               N+ +
Sbjct: 179 KADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
              +      +  T+     +L  +  L       T  I   + +L  L  L L+ N   
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQIT 76

Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
            ++   + N + +  + L+ N L  K  S    L  ++ L  T+  +T   P  L  LS+
Sbjct: 77  -DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256
           L+ L L  N    +      GL NL  LS+    +S  + PL  N+S + T     N I 
Sbjct: 131 LQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVS-DLTPL-ANLSKLTTLKADDNKIS 186

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              PL    +LPNL    +  NQ +
Sbjct: 187 DISPLA---SLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 93  PHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNL 149
             +  LS LQ L L  N  TN I P +  L  LQ L +   Q++         ++N S L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-----LANLSKL 175

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209
             +    N +     S   SL  L  +    N ++    S L N S+L  ++L+      
Sbjct: 176 TTLKADDNKI--SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT- 230

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           + P  +    NLV  ++V       I P   
Sbjct: 231 NQPVFY--NNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
            +L L   ++  T    +  L+ LQ L + N   ++ + P + +L +L  L    N    
Sbjct: 132 QVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS- 186

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           +I   +++  NL+ V L  N ++    S   + S L  ++ T   +T        NL   
Sbjct: 187 DISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234
               +         P T        + +L  N  S  
Sbjct: 244 --NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 14/183 (7%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
             LDLQ+ KL+ +LP      L+ L+ L L +N     +P  I   L+ L+ L++  N  
Sbjct: 40  KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 136 DGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL-G 192
              +P  +     NL  + L  N L   +P   F SL+KL +LS   N L  ++P  +  
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 193 NLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDV 250
            L+SL+ L L  N     +P+  F  L  L  L L  N L   +P   F ++  ++   +
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 251 GSN 253
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 19/216 (8%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQI 127
           +C+     V   D  + KL   +P +I   +  +KLDL++N  ++ +P +    L +L++
Sbjct: 13  SCNNNKNSV---DCSSKKLT-AIPSNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRL 65

Query: 128 LYLQINSFDGEIPASISNC-SNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTG 185
           LYL  N     +PA I     NL  + +  N L   +P   F  L  L  L    N L  
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122

Query: 186 NIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIF-NI 242
           ++P  +  +L+ L  LSL  N    S+P   F  L +L  L L  N L   +P   F  +
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180

Query: 243 SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278
           + ++T  + +N ++  +P     +L  L++  +  N
Sbjct: 181 TELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 9/146 (6%)

Query: 139 IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSL 197
           IP++I   ++   + L  N L+      F  L+KL+ L    N L   +P+ +   L +L
Sbjct: 31  IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 198 RGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYI 255
             L ++ N    ++P   F  L NL  L L  N L  ++PP +F +++ +    +G N +
Sbjct: 88  ETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +P  +   L +L+   +  NQ  
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLK 170

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 77  VTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINS 134
              L L    L  T+P H   NL  + ++ +  +    ++      +L ++  + ++   
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 135 FDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE--FGSLSKLQFLSTTANNLTGNIPS-S 190
               I          L  + +    L    P      S      L  T N    +IP  +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 191 LGNLSS-LRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIFN--ISSIQ 246
              L +    L L  NGF  S+    F G K L  + L  N     I    F    S   
Sbjct: 151 FQGLCNETLTLKLYNNGF-TSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
             DV    +   +P      L  L   +
Sbjct: 209 LLDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 76  RVTILDL-QNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQI 132
            ++ + +  ++ L   L  H   NLS +  +++RN      I P     L  L+ L +  
Sbjct: 56  NISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 133 NSFDGEIPA--SISNCSNLLVVSLALNHLAGKIPSE-FGSLSK-LQFLSTTANNLTGNIP 188
                  P    + +     ++ +  N     IP   F  L      L    N  T ++ 
Sbjct: 115 TGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKN-LVNLSLVVNNLSGTIPPLIF 240
               N + L  + L++N +   I  D FGG+ +    L +   +++  +P    
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNLSSLRGLSLSRN 205
            +   + L   HL       F +L  +  +  + +     + S S  NLS +  + +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 206 GFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIF--NISSIQTFDVGSNYIEGEMPLD 262
                I  D    L  L  L +    L    P L    +       ++  N     +P++
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 263 LGTTLPN-LRIFSITGNQFT 281
               L N      +  N FT
Sbjct: 150 AFQGLCNETLTLKLYNNGFT 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 46/220 (20%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
           V  +DL    +A         L  LQ L +   +    I       L  L IL L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 136 DGEIPASI-SNCSNLLVVSLALNHL-AGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSL- 191
             ++     +  +NL V++L   +L    +    F  L+ L+ L    NN+    P+S  
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGL--KNLVNLSLVVNNL--------SGTIPPLIFN 241
            N+     L L+ N       +       K+   L L    L                F 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +SI T D+  N  +  M       +   +I S+  +   
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 46  TNDALGVLGSWNDSIHFCEWYGVTCSP-----RHQRVTILDLQNLKLAGTLPPHIGNLSF 100
                 +L   + ++     Y +         ++  +T LDL       ++     +   
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 101 LQKL-------------DLRNNSFTNEIPPQIGHLRR--LQILYLQINSFDGEIPASI-S 144
             K+                + +F +        L    ++   L  +     +  S+ S
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFS 296

Query: 145 NCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203
           + ++L  ++LA N +  KI    F  L+ L  L+ + N L         NL  L  L LS
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 204 RNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
            N    ++   +F GL NL  L+L  N L  ++P  IF  ++S+Q   + +N
Sbjct: 356 YNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 101 LQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNH 158
           ++  DL  +     +   +  H   L+ L L  N  + +I  +     ++LL ++L+ N 
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 159 LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGG 217
           L       F +L KL+ L  + N++      S   L +L+ L+L  N    S+PD  F  
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 218 LKNLVNLSLVVNNL 231
           L +L  + L  N  
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 18/201 (8%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISN-CSNLLVVSLA 155
            LS +   D+       E          +  L L  N F   +     +  +   + SL 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 156 LNHLAGKIPS----EFGSLSKLQFLSTTANNLT---------GNIPSSL-GNLSSLRGLS 201
           L++      S     F       F    A+ +            +  S+  + + L  L+
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMP 260
           L++N       + F GL +L+ L+L  N L  +I   +F N+  ++  D+  N+I   + 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 261 LDLGTTLPNLRIFSITGNQFT 281
                 LPNL+  ++  NQ  
Sbjct: 364 DQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 31/233 (13%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQ--IGHLRRLQILYLQINS 134
            IL L   +    L       L+ L+ L L   +    +        L  L++L L+ N+
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 135 FDGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKL----------QFLSTTANNL 183
                PAS   N     V+ L  N +      +  +                       L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 184 TGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL-SLVVNNLSGTIPPLIFNI 242
                 +    +S+  L LS NGF  S+   F        + SL+++N            
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 243 --------------SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                         S ++T D+  + I   +   + +   +L   ++  N+  
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNLSSLRGLSLSRN 205
           +++  V L+LN +A    + F  L  LQFL          I + +   LSSL  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 206 GFYGSIPDTFGGLKNLVNLSLVVNNL-SGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDL 263
            F       F GL NL  L+L   NL    +    F  ++S++   +  N I+   P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 264 GTTLPNLRIFSITGNQFT 281
              +    +  +T N+  
Sbjct: 150 FLNMRRFHVLDLTFNKVK 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 9e-12
 Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 11/210 (5%)

Query: 77  VTILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINS 134
              L     KL   +          L+K+++  N     I   +  +L +L  + ++  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 135 FDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPS-SL 191
               I      N  NL  + ++   +   +P        +   L    N     I   S 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 192 GNLSS-LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFD 249
             LS     L L++NG        F G +         NNL   +P  +F   S     D
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 208

Query: 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279
           +    I   +P      L  LR  S    +
Sbjct: 209 ISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINS 134
             L + N  +   LP     +      LD+++N   + I      G      IL+L  N 
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGN 193
              EI  S  N + L  ++L+ N+   ++P++ F   S    L  +   +       L N
Sbjct: 166 IQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226
           L  LR  S         +P T   L  L+  SL
Sbjct: 225 LKKLRARSTYNL---KKLP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           + +T  IPS L    +   L              F G  +L  + +  N++   I   +F
Sbjct: 19  SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 241 -NISSIQTFDV-GSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            N+  +    +  +N +   +  +    LPNL+   I+     
Sbjct: 76  SNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK 117

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
               +L+   +   +      L+ + ++   N+   + +   I +L  +  L+L   ++ 
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLT 81

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                    ++N  NL  + L  N +   + S    L KL+ LS   N ++ +I + L +
Sbjct: 82  DIKP-----LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI-NGLVH 132

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L  L  L L  N    +       L  L  LSL  N +S  I PL   ++ +Q   +  N
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKN 188

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     L     L NL +  +   +  
Sbjct: 189 HISDLRAL---AGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 21/188 (11%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLVVS 153
             +   K +L+  S T+ +      L  +  +      I S  G     I    N+  + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLF 74

Query: 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           L  N L   I     +L  L +L    N +  ++ SSL +L  L+ LSL  NG   S  +
Sbjct: 75  LNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI--SDIN 128

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF 273
               L  L +L L  N ++  I  L   ++ + T  +  N I   +PL     L  L+  
Sbjct: 129 GLVHLPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQISDIVPLA---GLTKLQNL 183

Query: 274 SITGNQFT 281
            ++ N  +
Sbjct: 184 YLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLV 151
           + +L  L+ L L +N  ++ I   + HL +L+ LYL   +I          +S  + L  
Sbjct: 108 LKDLKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITV-----LSRLTKLDT 160

Query: 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           +SL  N ++  I      L+KLQ L  + N+++ ++  +L  L +L  L L         
Sbjct: 161 LSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKP 216

Query: 212 PDTFGGLKNLVNLSLVVNNL 231
            +    L     +     +L
Sbjct: 217 INHQSNLVVPNTVKNTDGSL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 14/163 (8%)

Query: 77  VTILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQIN 133
             +LDL +  L+  L        L+ L  L L +N     I  +    +  L+ L L  N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSN 98

Query: 134 SFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIP--- 188
                +   + S+   L V+ L  NH+   +    F  +++LQ L  + N ++   P   
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 189 -SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230
                 L  L  L LS N            L   V   L ++N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 173 LQFLSTTANNLTGNIPS--SLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVN 229
              L  + NNL+  + +  +   L++L  L LS N     I  + F  + NL  L L  N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSN 98

Query: 230 NLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +L  T+   +F ++ +++   + +N+I   +  +    +  L+   ++ NQ +
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
                +          L     +P ++      + LDL  N   +           LQ+L
Sbjct: 4   VEVVPNITY---QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 129 YLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGN 186
            L        I      + S+L  + L  N +   +    F  LS LQ L     NL  +
Sbjct: 58  DLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-S 114

Query: 187 IPSSL-GNLSSLRGLSLSRNGF-YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           + +   G+L +L+ L+++ N      +P+ F  L NL +L L  N +  +I     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL 169

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 78  TILDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSF 135
             L      LA +L     G+L  L++L++ +N   +   P+   +L  L+ L L  N  
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 136 DGEIPASI-SNCSNLLVVSLAL----NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS 190
              I  +       + +++L+L    N +    P  F  + +L+ L+   N L       
Sbjct: 162 -QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGI 219

Query: 191 LGNLSSLRGLSLSRN 205
              L+SL+ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 75  QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134
             +T LD  N  +  T    I  L+ L KL   +N+ T  +   +     L  L    N 
Sbjct: 42  ATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNK 96

Query: 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNL 194
               +   ++  + L  ++   N L      +      L +L+   N LT  I   + + 
Sbjct: 97  L-TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHN 147

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
           + L  L    N     +         L  L    N ++  +   +     +   +  +N 
Sbjct: 148 TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNN 202

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           I     LDL      L     + N+ T
Sbjct: 203 ITK---LDLN-QNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 24/204 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           T L   + KL   L   +  L+ L  L+   N  T     Q   L  L      +   D 
Sbjct: 88  TYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID- 143

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
                +S+ + L  +   LN        +    ++L  L  + N +T      +     L
Sbjct: 144 -----VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLL 193

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L+   N     +         L  L    N L+  I   +  ++ +  FD   N +  
Sbjct: 194 NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT- 246

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
              LD+  TL  L           
Sbjct: 247 --ELDVS-TLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 21/187 (11%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
           +   + L  L   +N  TN     +  L +L  L    N         +S    L  ++ 
Sbjct: 81  LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNC 134

Query: 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           A N L  +I       ++L  L    N     +   +   + L  L  S N     +   
Sbjct: 135 ARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD-- 186

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFS 274
               K L  L+   NN++  +   +     +   D  SN +     +D+   L  L  F 
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVT-PLTQLTYFD 239

Query: 275 ITGNQFT 281
            + N  T
Sbjct: 240 CSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 20/202 (9%)

Query: 80  LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
                 ++  T       L+ L  LD  N+S T+     I  L  L  L    N+    +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TL 79

Query: 140 PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199
              +S  +NL  ++   N L   +      L+KL +L+   N LT      +     L  
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTY 131

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEM 259
           L+ +RN     I         L  L   +N         +   + + T D   N I    
Sbjct: 132 LNCARNTLT-EID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE-- 184

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
            LD+      L   +   N  T
Sbjct: 185 -LDVS-QNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 23/208 (11%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           T LD  + KL   +   +  L+ L   D   N  T      +  L  L  +   +   D 
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID- 270

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
                +++ + L+               +    ++L  L   A  +T  +   L     L
Sbjct: 271 -----LTHNTQLI--YFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKL 320

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257
             L L+       +         L +LS V  ++       +  I ++            
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTIT 375

Query: 258 EMPLDLG----TTLPNLRIFSITGNQFT 281
                L     T   +  +    GN   
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 16/205 (7%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
           T L      L   +   + + + L            E+   + H  +L +L  Q      
Sbjct: 257 TTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT- 310

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           E+   +S    L+ + L    L  ++       +KL+ LS    ++  +  S +G + +L
Sbjct: 311 ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPAL 363

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG---TIPPLIFNISSIQTFDVGSNY 254
                +         +T       + +S  + +  G    I P    +    T  +    
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQ 279
           +  + P    T          T   
Sbjct: 424 LSTDNPAVTYTFTSENGAIVGTVTT 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 15/226 (6%)

Query: 66  YGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG----- 120
             +T  P    VT+  ++                 ++ L++ N + T  I  +       
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 121 HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
            L+ L I +++   F     A  S  + + +  L+++           S S   FL+ T 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
           N  T ++      L  L+ L L RNG   +        KN+ +L  +  +L+ ++    +
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLN-SLNSHAY 420

Query: 241 NI-----SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +       SI   ++ SN + G +   L    P +++  +  N+  
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 68  VTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI 127
           + C P     T L+        ++      L  LQ L L+ N   N         + +  
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSS 404

Query: 128 LYLQINSFD----GEIPASISNCSNLLVVSLALNHLAG---------------------K 162
           L     S +         + +   ++LV++L+ N L G                      
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464

Query: 163 IPSEFGSLSKLQFLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGF 207
           IP +   L  LQ L+  +N L  ++P      L+SL+ + L  N +
Sbjct: 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 11/218 (5%)

Query: 67  GVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQ 126
           G      ++  +++D  N  L   +P  +      + L L  NS +    P I  L  L+
Sbjct: 23  GSMTPFSNELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 127 ILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185
           +L L  N     +   +     +L  + ++ N L   I      ++ L+ L  + N+   
Sbjct: 80  VLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDV 135

Query: 186 -NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK-NLVNLSLVVNNLSGTIPPLIFNIS 243
             +    GNL+ L  L LS   F          L  + + L LV  ++ G     +   +
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195

Query: 244 SIQT-FDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           +         N +           L +L++ +I  N  
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 95  IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLV 151
              L+   K +L   S T+ +      L  +Q        I S  G     +   +NL  
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKE 67

Query: 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           + L+ N ++  + S    L+KL+ LS   N L  N+ + + +   L  L L  N      
Sbjct: 68  LHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NL-NGIPSA-CLSRLFLDNNEL--RD 120

Query: 212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
            D+   LKNL  LS+  N L  +I  L   +S ++  D+  N I     L     L  + 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIVMLG-FLSKLEVLDLHGNEITNTGGLT---RLKKVN 175

Query: 272 IFSITGNQFT 281
              +TG +  
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 77  VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYL---QIN 133
               +L    +  T       LS +Q  +  N++  + +   +     L+ L+L   QI+
Sbjct: 21  AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQS-LAG-MQFFTNLKELHLSHNQIS 76

Query: 134 SFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN 193
                    + + + L  +S+  N L   +       + L  L    N L      SL +
Sbjct: 77  DLSP-----LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLIH 126

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253
           L +L  LS+  N          G L  L  L L  N ++     L   +  +   D+   
Sbjct: 127 LKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEIT-NTGGL-TRLKKVNWIDLTGQ 182

Query: 254 YI 255
             
Sbjct: 183 KC 184

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 102 QKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHL 159
            ++ L  N+    IPP      ++L+ + L  N    E+         +L  + L  N +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 160 AGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK 219
                S F  L  LQ L   AN +      +  +L +L  LSL  N        TF  L+
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 220 NLVNLSLVVN 229
            +  + L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
             +    N +    P +      LR + LS N      PD F GL++L +L L  N ++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 234 TIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +P  +F  + S+Q   + +N I   + +D    L NL + S+  N+  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 63  CEWYGVTCS-------PRH--QRVTILDLQNLKLAGTLPPHIG--NLSFLQKLDLRNNSF 111
           CE   V CS       P H  Q    L L N +    L        L  L+K++  NN  
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKI 69

Query: 112 TNEIPPQI-GHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSE-FG 168
           T +I          +  + L  N  +  +   +     +L  + L  N +   + ++ F 
Sbjct: 70  T-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

Query: 169 SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRN 205
            LS ++ LS   N +T   P +   L SL  L+L  N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 32/147 (21%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSE--FGSLSKLQFLSTTANNLTGNIPSSLGNLS 195
           +IP  I        + L  N     + +   F  L +L+ ++ + N +T     +    S
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 196 SLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254
            +  + L+ N    ++    F GL++L  L L  N ++  +    F              
Sbjct: 82  GVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI------------- 126

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
                       L ++R+ S+  NQ T
Sbjct: 127 -----------GLSSVRLLSLYDNQIT 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 145 NCSNLLVVSLALNHLA-GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203
             +    V L        K+ +   +L   + L+ + NN+   I SSL  + +LR LSL 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLG 78

Query: 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDL 263
           RN     I +       L  L +  N ++ ++  +   + +++   + +N I     +D 
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIE-KLVNLRVLYMSNNKITNWGEIDK 135

Query: 264 GTTLPNLRIFSITGNQFT 281
              L  L    + GN   
Sbjct: 136 LAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 74  HQRVTILDLQNLKLAGTLPP------HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI 127
            + V   + + ++L G +PP       +  L   + L L  N+   +I   +  +  L+I
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRI 74

Query: 128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-N 186
           L L  N    +I    +    L  + ++ N +A  + S    L  L+ L  + N +T   
Sbjct: 75  LSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWG 131

Query: 187 IPSSLGNLSSLRGLSLSRN 205
               L  L  L  L L+ N
Sbjct: 132 EIDKLAALDKLEDLLLAGN 150

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 163 IPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNL 221
           +P E  +   L  +  + N ++     S  N++ L  L LS N     IP  TF GLK+L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104

Query: 222 VNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
             LSL  N++S  +P   F ++S++    +G+N
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 97  NLSFLQKLDLRNNSFTN-EIPPQIGHLRRLQILYL---QINSFDGEIPASISNCSNLLVV 152
             S +++L L N+     ++         L+ L      + S        +   + L  +
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKL 69

Query: 153 SLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRN 205
            L+ N ++G +         L  L+ + N +   +    L  L +L+ L L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
            +  G +         L  LS    G   SI +    L  L  L L  N +SG +  L  
Sbjct: 28  RSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              ++   ++  N I+    ++    L NL+   +   + T
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLA 160
           Q L L +N  T   P     L  L+ LYL  N     +P  +  + + L V+ L  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 161 GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLK 219
               + F  L  L+ L    N LT  +P  +  L+ L  L+L +N    SIP   F  L 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLS 159

Query: 220 NLVNLSLVVN 229
           +L +  L  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 126 QILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185
           QILYL  N      P    +  NL  + L  N L       F SL++L  L    N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 186 NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISS 244
              +    L  L+ L +  N     +P     L +L +L+L  N L  +IP   F  +SS
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSS 160

Query: 245 IQTFDVGSN 253
           +    +  N
Sbjct: 161 LTHAYLFGN 169

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240
            +  G I        +L  LSL   G   S+ +    L  L  L L  N + G +  L  
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            + ++   ++  N ++    L+    L  L+   +   + T
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 165 SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP--DTFGGLKNLV 222
           +++ +  + + L      +   I +    L     +  S N     I   D F  L+ L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLK 67

Query: 223 NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            L +  N +      L   +  +    + +N +     LD   +L +L    I  N  T
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 93  PHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ---INSFDGEIPASISNCSNL 149
               N    ++LDLR       I      L +   +      I   DG           L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRL 66

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRN 205
             + +  N +         +L  L  L  T N+L        L +L SL  L + RN
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS--- 134
              +L+   +          L+ + ++   N+   +     I +L  ++ L L  N    
Sbjct: 22  IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD 77

Query: 135 ---FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL 191
                          +NL  + L  N L       F  L+ L+ L    N L        
Sbjct: 78  ISALKE--------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 192 GNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIFN 241
             L++L  L+L+ N    S+P   F  L NL  L L  N L  ++P  +F+
Sbjct: 130 DKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFD 178

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNC-SNLLVVSLALNHLA 160
             LDL  NS  +        L  L  LYL  N     +P  + N  ++L  ++L+ N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 161 GKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGL 218
                 F  L++L+ L+   N L  ++P  +   L+ L+ L L +N    S+PD  F  L
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRL 147

Query: 219 KNLVNLSLVVN 229
            +L  + L  N
Sbjct: 148 TSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 154 LALNHLAGKIPSE--FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           L  N L  +I S+  FG L  L  L    N LTG  P++    S ++ L L  N     I
Sbjct: 36  LNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEI 93

Query: 212 PD-TFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSN 253
            +  F GL  L  L+L  N +S  + P  F +++S+ + ++ SN
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSS 196
           +    +    NL  + +        +       L +L+ L+   + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
           L  L+LS N        T  GL +L  L L  N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLP 268
                  G +NL  L +        +       +  ++   +  + +   +  D     P
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 269 NLRIFSITGNQFT 281
            L   +++ N   
Sbjct: 81  RLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 114 EIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLVVSLALNHLAGKIPSEFGSLSK 172
           +    +     L  LY++       +    +     L  +++  + L    P  F    +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF 207
           L  L+ + N L      ++  L SL+ L LS N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 126 QILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185
           + L LQ         A+    + L  ++L  N L       F  L++L  L    N L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 186 NIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPLIFN-I 242
           ++P  +  +L+ L  L L  N    S+P   F  L  L  L L  N L  +IP   F+ +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 243 SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           +++QT  + +N ++  +P      L  L+  ++ GNQF
Sbjct: 155 TNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 97  NLSFLQKLDLRNNSFTNEIPPQIGHL----RRLQILYLQINSF---DGEIPASISNCSNL 149
               L++LDLR +   +     + H       L  L +   +       +   ++ C NL
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 150 LVVSLALNHLAGKIPSEFGSLSKLQFLST------TANNLTGNIPSSLGNLSSLRGLSLS 203
             + L       K+ +      +L+ L T         ++   +  +L     LR LS  
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 204 RNGFYGSIPDTFGGLKNLVNLSL 226
            +     +P  +     L  L+L
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNL 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 27/258 (10%)

Query: 50  LGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNN 109
           L      + +               +++  L L  +     +P      + ++KLDL   
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYA 303

Query: 110 SF-TNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFG 168
              T +    I     L++L  +    D  +      C  L  + +        +  E G
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 169 SLS------------KLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGSIP 212
            +S            +L++++   +++T      I + L NL   R + L R      +P
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423

Query: 213 DTFG------GLKNLVNLSLVVNNLSGTIPPLIF---NISSIQTFDVGSNYIEGEMPLDL 263
              G      G K L   +  +     T   L +      +++   +G      E  ++ 
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 264 GTTLPNLRIFSITGNQFT 281
               PNL+   + G  F+
Sbjct: 484 SRGCPNLQKLEMRGCCFS 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.8e-38  Score=268.63  Aligned_cols=248  Identities=31%  Similarity=0.552  Sum_probs=202.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEcCCCCcce--ecCccCcCCCCCC
Q 038776           29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRH--QRVTILDLQNLKLAG--TLPPHIGNLSFLQ  102 (281)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~~--~~l~~l~l~~~~l~~--~~~~~~~~l~~L~  102 (281)
                      .|.+.|+.++++|++.+. ++. .+.+|..+.++|.  |.|+.|....  .+++.|+++++.+.+  .+|..+..+++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            578889999999999985 444 6788988888998  9999998654  789999999999998  8999999999999


Q ss_pred             EEECCC-CCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776          103 KLDLRN-NSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       103 ~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  181 (281)
                      +|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 8898889999999999999999999998888988999999999999999998888888899999999999999


Q ss_pred             cccccCCccccCCC-CCCeEEcccCCCccccccc-----------------------CCCCCCCCeEecccCcCcCCCCc
Q 038776          182 NLTGNIPSSLGNLS-SLRGLSLSRNGFYGSIPDT-----------------------FGGLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       182 ~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~l~~n~~~~~~~~  237 (281)
                      .+++.+|..+..++ +|++|++++|.+++.+|..                       +..+++|+.|++++|.+++.+|.
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence            98888888888877 7888888877776555544                       44455555555555555543333


Q ss_pred             cccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          238 LIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       238 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       +..+++|++|++++|.+++.+|..+.. +++|+.|++++|++
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNL  280 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEE
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECcCCcc
Confidence             555667777777777777777776665 77788888887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.4e-35  Score=249.34  Aligned_cols=247  Identities=19%  Similarity=0.288  Sum_probs=195.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEEcCCCCcceecCccC
Q 038776           28 VSGNETDRAALLEFKSKITNDALGVLGSW----NDSIHFCEWYGVTCSP--------RHQRVTILDLQNLKLAGTLPPHI   95 (281)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~~~~--------~~~~l~~l~l~~~~l~~~~~~~~   95 (281)
                      .+...+++.++++|+..+..++..+...|    ....++|.|.|+.|..        ...+++.|+++++.+. .+|..+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            34455688999999998866776667788    4566789999998842        2367889999999888 677778


Q ss_pred             cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCC------
Q 038776           96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGS------  169 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~------  169 (281)
                      ..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            88889999999998888 78888888888999999888888 77888888888888888888777777776554      


Q ss_pred             ---CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC
Q 038776          170 ---LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ  246 (281)
Q Consensus       170 ---l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  246 (281)
                         +++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..++.+++|+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence               788888888888877 67777777888888888888877 4555677778888888888777777777777778888


Q ss_pred             EEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       247 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|++++|.+.+.+|..+.. +++|+.|++++|++
T Consensus       257 ~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVN  289 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTT
T ss_pred             EEECCCCCchhhcchhhhc-CCCCCEEeCCCCCc
Confidence            8888887777777777665 78888888887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.9e-35  Score=270.33  Aligned_cols=244  Identities=22%  Similarity=0.359  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCC-------CCCCCCCCccc---cceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCC
Q 038776           32 ETDRAALLEFKSKITNDALGVLG-------SWNDSIHFCEW---YGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFL  101 (281)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L  101 (281)
                      ..|+.||.++++++.++.|....       +|..+.++|.|   .|+.|... ++|+.|+++++++.|.+|+.++.+++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence            46889999999998766665433       79988899999   99999875 899999999999999999999999999


Q ss_pred             CEEECCCCCC----------------------------------------------------------------------
Q 038776          102 QKLDLRNNSF----------------------------------------------------------------------  111 (281)
Q Consensus       102 ~~L~l~~n~~----------------------------------------------------------------------  111 (281)
                      ++|++++|.+                                                                      
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~  187 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ  187 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred             eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence            9999999843                                                                      


Q ss_pred             --------ccCCchhccCCCcccEeeccCCccccc-----------------CCccCc--CCCCCcEEEcccCCCCCCCc
Q 038776          112 --------TNEIPPQIGHLRRLQILYLQINSFDGE-----------------IPASIS--NCSNLLVVSLALNHLAGKIP  164 (281)
Q Consensus       112 --------~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~~~~p  164 (281)
                              ++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|
T Consensus       188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p  266 (636)
T 4eco_A          188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP  266 (636)
T ss_dssp             TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred             hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence                    23 788899999999999999999975                 999999  99999999999999999999


Q ss_pred             hhcCCCCCCCEEeCcCCc-ccc-cCCccccCC------CCCCeEEcccCCCcccccc--cCCCCCCCCeEecccCcCcCC
Q 038776          165 SEFGSLSKLQFLSTTANN-LTG-NIPSSLGNL------SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       165 ~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .++.+++|+.|++++|.++|.
T Consensus       267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence            999999999999999998 888 788877776      89999999999998 8888  889999999999999999888


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCC-CcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN-LRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~-L~~L~l~~N~l~  281 (281)
                      +| .++.+++|++|++++|.++ .+|..+.. +++ |+.|++++|+++
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS
T ss_pred             hh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc
Confidence            88 8888888888888888888 77877666 777 888888888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.5e-34  Score=267.09  Aligned_cols=246  Identities=25%  Similarity=0.376  Sum_probs=189.0

Q ss_pred             cccCCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCccee---cC---------
Q 038776           25 AFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGT---LP---------   92 (281)
Q Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~---~~---------   92 (281)
                      |++++..+.|+.|+++||+.+. ++. .+.+|..+++||.|.|+.|.  .++|+.++++++.+.|.   ++         
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             CccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            3444556789999999999987 665 88999988899999999998  48999999999988876   44         


Q ss_pred             --------------ccCcCCCCCCEEECCCCCCccCCch--hccCCCcccEeeccCCcccccCCccC-cCCCCCcEEEcc
Q 038776           93 --------------PHIGNLSFLQKLDLRNNSFTNEIPP--QIGHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLA  155 (281)
Q Consensus        93 --------------~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~  155 (281)
                                    ..++.+++|++|++++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ .++++|++|+++
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  159 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS  159 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence                          4566667777777777777766666  67777777777777777776666554 677777777777


Q ss_pred             cCCCCCCCchh---cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776          156 LNHLAGKIPSE---FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       156 ~n~~~~~~p~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      +|.+.+..|..   +..+++|++|++++|.+.+..|.  ..+++|++|++++|.+++.+|. ++.+++|++|++++|.++
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence            77777666655   67777777777777777655432  6778888888888888776666 788888888888888888


Q ss_pred             CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          233 GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       233 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +.+|..++.+++|++|++++|.+++.+|..   .+++|++|++++|++
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF  281 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence            778888888888888888888888777754   378888888888865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-33  Score=262.85  Aligned_cols=241  Identities=22%  Similarity=0.307  Sum_probs=209.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCcEEEEEcCCCCcce
Q 038776           29 SGNETDRAALLEFKSKITNDALGVLGSWNDSI-----HF--CEW------------YGVTCSPRHQRVTILDLQNLKLAG   89 (281)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~~~~~~~~l~~l~l~~~~l~~   89 (281)
                      +....|+.||++|++++.+.      +|..+.     ++  |.|            .|+.|.. .++|+.|+++++++.|
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred             ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence            34456899999999998533      454332     44  999            9999986 4899999999999999


Q ss_pred             ecCccCcCCCCCCEEEC-CCCCCccC------------------------------------------------------
Q 038776           90 TLPPHIGNLSFLQKLDL-RNNSFTNE------------------------------------------------------  114 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l-~~n~~~~~------------------------------------------------------  114 (281)
                      .+|+.++.+++|++|++ ++|.+.|.                                                      
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            99999999999999999 77654332                                                      


Q ss_pred             ----------------------CchhccCCCcccEeeccCCcccc-----------------cCCccCc--CCCCCcEEE
Q 038776          115 ----------------------IPPQIGHLRRLQILYLQINSFDG-----------------EIPASIS--NCSNLLVVS  153 (281)
Q Consensus       115 ----------------------~~~~~~~l~~L~~L~l~~n~~~~-----------------~~p~~l~--~l~~L~~L~  153 (281)
                                            +|..++++++|++|++++|.+++                 .+|..++  ++++|++|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  78889999999999999999997                 3899988  999999999


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCc-ccc-cCCccccCC-------CCCCeEEcccCCCcccccc--cCCCCCCCC
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANN-LTG-NIPSSLGNL-------SSLRGLSLSRNGFYGSIPD--TFGGLKNLV  222 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~  222 (281)
                      +++|.+.+.+|..++.+++|+.|++++|+ +++ .+|..++.+       ++|++|++++|.++ .+|.  .++.+++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            99999999999999999999999999998 887 677765554       49999999999998 8888  899999999


Q ss_pred             eEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC-CcEEEcccccCC
Q 038776          223 NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN-LRIFSITGNQFT  281 (281)
Q Consensus       223 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~-L~~L~l~~N~l~  281 (281)
                      .|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+.. +++ |+.|++++|+++
T Consensus       577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC
T ss_pred             EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC
Confidence            9999999998 788 8888999999999999998 88887776 888 999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.8e-31  Score=224.47  Aligned_cols=202  Identities=26%  Similarity=0.450  Sum_probs=142.6

Q ss_pred             CcEEEEEcCC-CCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQN-LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ++++.|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4556666663 555555555566666666666666665555555555555666666665555555555555555555555


Q ss_pred             cccCCCCCCCchhcCCCC-CCCE-----------------------EeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          154 LALNHLAGKIPSEFGSLS-KLQF-----------------------LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~-~L~~-----------------------L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      +++|.+++.+|..+..++ +|+.                       |++++|.+++..|..+..+++|++|++++|.+++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            555555555555555544 4444                       4555555554555666777888888888888876


Q ss_pred             cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      .+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|.. . .+++|+.+++++|+
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~-~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G-NLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T-TGGGSCGGGTCSSS
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c-cccccChHHhcCCC
Confidence            6665 778899999999999999999999999999999999999999999975 3 48999999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.7e-30  Score=244.26  Aligned_cols=205  Identities=30%  Similarity=0.482  Sum_probs=142.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..++.+++|++|++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            34555555555555555555555666666666666666566666666666666666666666666666666666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-------------------------------------------
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-------------------------------------------  191 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-------------------------------------------  191 (281)
                      ++|++.+.+|..+..+++|+.|++++|.+++.+|..+                                           
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS  601 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence            6666666666666666667777766666665555332                                           


Q ss_pred             ---------------------------cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCC
Q 038776          192 ---------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISS  244 (281)
Q Consensus       192 ---------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  244 (281)
                                                 ..+++|++|++++|.++|.+|..++.+++|+.|++++|+++|.+|..++.+++
T Consensus       602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~  681 (768)
T 3rgz_A          602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG  681 (768)
T ss_dssp             GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence                                       22356777777777777777878888888888888888888888888888888


Q ss_pred             CCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          245 IQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       245 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |+.||+++|+++|.+|..+.. +++|+.|++++|++
T Consensus       682 L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          682 LNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNL  716 (768)
T ss_dssp             CCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEE
T ss_pred             CCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcc
Confidence            888888888888888877766 88888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=3.7e-29  Score=208.68  Aligned_cols=206  Identities=20%  Similarity=0.213  Sum_probs=186.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-ccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-FDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~  153 (281)
                      ++++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            679999999999998777789999999999999999997778899999999999999997 7755578899999999999


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      +++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            99999998778889999999999999999996666678999999999999999996666679999999999999999998


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ..|..+..+++|++|++++|.+++ +|...+..+++|+.|++++|+++
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence            889999999999999999999995 55554455999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=4.7e-29  Score=206.49  Aligned_cols=216  Identities=23%  Similarity=0.309  Sum_probs=185.9

Q ss_pred             CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC
Q 038776           61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  140 (281)
                      +.|.|.|..|.-. .+.+.++++++.+. .+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.++...+
T Consensus         3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            3 ALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             CCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             ccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            5799999887542 34678999999988 5666554  689999999999996666789999999999999999984444


Q ss_pred             ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCC
Q 038776          141 ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN  220 (281)
Q Consensus       141 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  220 (281)
                      ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS  158 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence            55688999999999999999666667899999999999999999777777899999999999999999766667899999


Q ss_pred             CCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          221 LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      |+.|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus       159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            999999999999776677889999999999999998 566655556999999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.3e-29  Score=212.37  Aligned_cols=201  Identities=21%  Similarity=0.308  Sum_probs=189.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcC---------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISN---------  145 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~---------  145 (281)
                      .+++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            67999999999999 88989999999999999999999 88999999999999999999888889987765         


Q ss_pred             CCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEe
Q 038776          146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS  225 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  225 (281)
                      +++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|+
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            999999999999999 88999999999999999999999 5677899999999999999999999999999999999999


Q ss_pred             cccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          226 LVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       226 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.+++..|.+
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGS
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHH
Confidence            9999999999999999999999999999999999999987 99999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.2e-28  Score=205.92  Aligned_cols=205  Identities=23%  Similarity=0.270  Sum_probs=132.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCcc-------------------------CCchhccCCCcccEee
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-------------------------EIPPQIGHLRRLQILY  129 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------------~~~~~~~~l~~L~~L~  129 (281)
                      ++++.|+++++.+....+..|..+++|++|++++|.+..                         .+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            456677777776663333335666666666666666542                         2333344555555555


Q ss_pred             ccCCcccccCC-ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCC
Q 038776          130 LQINSFDGEIP-ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       130 l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~  207 (281)
                      +++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            55555552222 345666666666666666665555666667777777777777664 3566667777777777777777


Q ss_pred             cccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCC-CCCcEEEcccccC
Q 038776          208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTL-PNLRIFSITGNQF  280 (281)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~N~l  280 (281)
                      ++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+.. + ++|+.|++++|++
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC-CCTTCCEEECTTCCE
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh-hhccCCEEEccCCCe
Confidence            7666667777777777777777777655556677777777777777777666665554 5 3777777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.4e-27  Score=211.64  Aligned_cols=203  Identities=22%  Similarity=0.241  Sum_probs=142.8

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57888888888888777788888888888888888888777778888888888888888888555556778888888888


Q ss_pred             ccCCCCCCCchhcCCCCC-------------------------CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          155 ALNHLAGKIPSEFGSLSK-------------------------LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~-------------------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      ++|.+....+..+..+++                         |+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            888877443334444444                         4555555554442 22 34455666666666666665


Q ss_pred             cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|...+..+++|+.|++++|++
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence            55666667777777777777776666666777777777777777776 44444444477777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=2.2e-27  Score=196.98  Aligned_cols=205  Identities=21%  Similarity=0.192  Sum_probs=179.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            56899999999999777778999999999999999999777778999999999999999999777788999999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCccccc-CCccccCCCCCCeEEcccCCCcccccccCCCCCCCC----eEecccC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV----NLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n  229 (281)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+    .+++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999976666799999999999999999863 588999999999999999999977777777666666    8999999


Q ss_pred             cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+++..+.. ....+|++|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus       188 ~l~~~~~~~-~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQPGA-FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECTTS-SCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccCccc-cCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence            998554444 44558999999999998 566666666999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.9e-27  Score=207.48  Aligned_cols=203  Identities=24%  Similarity=0.264  Sum_probs=134.5

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            44566666666666555556666666666666666666555556666666666666666666333334566666666666


Q ss_pred             ccCCCCCCCchh-------------------------cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          155 ALNHLAGKIPSE-------------------------FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       155 ~~n~~~~~~p~~-------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      ++|.+....+..                         +..+++|+.|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            666555333323                         445556666666666555 333 35566677777777777776


Q ss_pred             cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|++
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            66777777888888888888887766777778888888888888887 45555555588888888888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=4.1e-27  Score=208.63  Aligned_cols=68  Identities=13%  Similarity=0.301  Sum_probs=41.3

Q ss_pred             cccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |..++.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHI  359 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCC
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcc
Confidence            444555566666666666666555556666666666666666666444443333 66677777776665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=201.53  Aligned_cols=184  Identities=21%  Similarity=0.262  Sum_probs=165.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      .+++.|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            67888999998887 456678899999999999999985444 5789999999999999999988888899999999999


Q ss_pred             cccCCCCC-CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776          154 LALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       154 l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      +++|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            99999986 57888999999999999999999877889999999999999999999777778889999999999999999


Q ss_pred             CCCCccccCCC-CCCEEEcccCcccccC
Q 038776          233 GTIPPLIFNIS-SIQTFDVGSNYIEGEM  259 (281)
Q Consensus       233 ~~~~~~l~~~~-~L~~L~l~~n~l~~~~  259 (281)
                      +..|..+..++ +|++|++++|++.+..
T Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          237 TSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             BCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             ccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            88888888884 9999999999998654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.6e-26  Score=196.81  Aligned_cols=215  Identities=23%  Similarity=0.312  Sum_probs=172.2

Q ss_pred             CccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC
Q 038776           62 FCEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI  132 (281)
Q Consensus        62 ~c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  132 (281)
                      .|.+..+.|...         .++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            366777776532         25789999999999977777899999999999999999987889999999999999999


Q ss_pred             CcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc--cCCccccCC----------------
Q 038776          133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG--NIPSSLGNL----------------  194 (281)
Q Consensus       133 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l----------------  194 (281)
                      |.++ .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.++.  ..+..+..+                
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence            9998 6776654  788999999998886555568888888888888888752  333333332                


Q ss_pred             ----CCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCC
Q 038776          195 ----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL  270 (281)
Q Consensus       195 ----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L  270 (281)
                          ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+.. +++|
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~L  266 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-LKLL  266 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG-CTTC
T ss_pred             ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc-CccC
Confidence                46677777777777666677888888888888888888766677888888999999998888 78877765 8889


Q ss_pred             cEEEcccccCC
Q 038776          271 RIFSITGNQFT  281 (281)
Q Consensus       271 ~~L~l~~N~l~  281 (281)
                      +.|++++|+++
T Consensus       267 ~~L~l~~N~l~  277 (332)
T 2ft3_A          267 QVVYLHTNNIT  277 (332)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCCCC
Confidence            99999888874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=5.6e-27  Score=207.75  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC
Q 038776          167 FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ  246 (281)
Q Consensus       167 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  246 (281)
                      +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            33444455555555554444444455555555555555555544455555555555555555555554455555566666


Q ss_pred             EEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       247 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|++++|.++ .+|...+..+++|+.|++++|++
T Consensus       375 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCccc-cCCHhHhccCCcccEEEccCCCc
Confidence            6666666665 34433333466666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=2.3e-26  Score=192.21  Aligned_cols=199  Identities=22%  Similarity=0.212  Sum_probs=175.5

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.++++++++. .+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+++ ++.. ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence            56788999999888 5666554  689999999999997778889999999999999999984 4433 78999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+. .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            999998 7888889999999999999999966667899999999999999999977777788999999999999999966


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+..+..+++|++|++++|.++ .+|..++. +++|+.+++++|++.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence            5667788999999999999998 88988887 789999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.1e-26  Score=190.94  Aligned_cols=200  Identities=23%  Similarity=0.235  Sum_probs=177.2

Q ss_pred             EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      +.++.+++++. .+|..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56777787777 455544  468999999999999777778999999999999999999777889999999999999999


Q ss_pred             C-CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776          158 H-LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       158 ~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  236 (281)
                      . +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 776668889999999999999999997778889999999999999999997777778999999999999999997666


Q ss_pred             ccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          237 PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       237 ~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ..+..+++|++|++++|.+++..|..+.. +++|+.|++++|+++
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCC
Confidence            67899999999999999999777777765 999999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=4.3e-26  Score=193.97  Aligned_cols=215  Identities=24%  Similarity=0.328  Sum_probs=156.2

Q ss_pred             CccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC
Q 038776           62 FCEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI  132 (281)
Q Consensus        62 ~c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  132 (281)
                      .|.+..+.|...         .+.++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            466666666531         25788999999999977677899999999999999999977788999999999999999


Q ss_pred             CcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc--cCCccccCCC---------------
Q 038776          133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG--NIPSSLGNLS---------------  195 (281)
Q Consensus       133 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~---------------  195 (281)
                      |.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..++               
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            9888 6665543  667777777777765555556666666666666666542  3334444444               


Q ss_pred             ------CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776          196 ------SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       196 ------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  269 (281)
                            +|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+.. +++
T Consensus       187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~  264 (330)
T 1xku_A          187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKY  264 (330)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT-CSS
T ss_pred             CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc-CCC
Confidence                  4555555555555555666777777778888777777666667777777888888888777 67766655 778


Q ss_pred             CcEEEcccccCC
Q 038776          270 LRIFSITGNQFT  281 (281)
Q Consensus       270 L~~L~l~~N~l~  281 (281)
                      |+.|++++|+++
T Consensus       265 L~~L~l~~N~i~  276 (330)
T 1xku_A          265 IQVVYLHNNNIS  276 (330)
T ss_dssp             CCEEECCSSCCC
T ss_pred             cCEEECCCCcCC
Confidence            888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=204.11  Aligned_cols=180  Identities=24%  Similarity=0.292  Sum_probs=144.5

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC--------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP--------------  140 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--------------  140 (281)
                      ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+              
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            567777777777776655667777777777777777764444456666777777776666553222              


Q ss_pred             -----------ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          141 -----------ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       141 -----------~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                                 ..+.++++|++|++++|.++ .+| .+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence                       24566778888888888887 455 47889999999999999998888999999999999999999998


Q ss_pred             cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88889999999999999999999777778889999999999999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-26  Score=203.81  Aligned_cols=182  Identities=23%  Similarity=0.256  Sum_probs=151.5

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc------------
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA------------  141 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~------------  141 (281)
                      .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+.            
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence            36788888888888877777788888888888888888855556677888888888888877633222            


Q ss_pred             -------------cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776          142 -------------SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       142 -------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                                   .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence                         35566777777777777763 34 4788999999999999999888889999999999999999999


Q ss_pred             ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       209 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      +..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.-
T Consensus       256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            8888899999999999999999997777788899999999999998863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2.2e-26  Score=210.67  Aligned_cols=203  Identities=20%  Similarity=0.210  Sum_probs=137.8

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+..++++++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            45667777777777666667777888888888888877666667777888888888888777333334577788888888


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccC-----------------------------------------------
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI-----------------------------------------------  187 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-----------------------------------------------  187 (281)
                      ++|.+.+..|..++.+++|+.|++++|.+++..                                               
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            888877666667777777777777777665321                                               


Q ss_pred             ------------CccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcc
Q 038776          188 ------------PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI  255 (281)
Q Consensus       188 ------------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  255 (281)
                                  +..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus       235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence                        1123344566666666666665566666666666666666666663 455555666777777777776


Q ss_pred             cccCChhhhhCCCCCcEEEcccccC
Q 038776          256 EGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       256 ~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      + .+|..+.. +++|+.|++++|++
T Consensus       314 ~-~i~~~~~~-l~~L~~L~L~~N~l  336 (597)
T 3oja_B          314 L-HVERNQPQ-FDRLENLYLDHNSI  336 (597)
T ss_dssp             C-CCGGGHHH-HTTCSEEECCSSCC
T ss_pred             C-ccCccccc-CCCCCEEECCCCCC
Confidence            6 56655554 66666666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-27  Score=204.18  Aligned_cols=205  Identities=20%  Similarity=0.223  Sum_probs=120.6

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            34555666666555444445555556666666665555444555555555666666555555222222555555555555


Q ss_pred             ccCCCCCCCch--hcCCCCCCCEEeCcCCc-ccccCCccccCCCCCCeEEcccCCCcccccccCCC--------------
Q 038776          155 ALNHLAGKIPS--EFGSLSKLQFLSTTANN-LTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG--------------  217 (281)
Q Consensus       155 ~~n~~~~~~p~--~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--------------  217 (281)
                      ++|.+. .+|.  .+..+++|+.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..              
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            555555 2332  45555555555555552 33333344555555555555555555444444444              


Q ss_pred             ----------CCCCCeEecccCcCcCC-------------------------------CCccccCCCCCCEEEcccCccc
Q 038776          218 ----------LKNLVNLSLVVNNLSGT-------------------------------IPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       218 ----------l~~L~~L~l~~n~~~~~-------------------------------~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                                +++|+.|++++|.+++.                               +|..+..+++|++|++++|.++
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence                      45566666666665542                               2334567788999999999998


Q ss_pred             ccCChhhhhCCCCCcEEEcccccCC
Q 038776          257 GEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       .+|..++..+++|++|++++|+++
T Consensus       291 -~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          291 -SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -ccCHHHHhcCCCCCEEEeeCCCcc
Confidence             788877666899999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=205.23  Aligned_cols=206  Identities=19%  Similarity=0.240  Sum_probs=128.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            45666667766666655566666666777777766666555666666666666666666666333334566666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC-
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG-  233 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-  233 (281)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ 
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            6666665555566666666666666666665555556666666666666666654444445555555555555555543 


Q ss_pred             -----------------------CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          234 -----------------------TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 -----------------------~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                                             .+|.......+|++|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCC
Confidence                                   33333333445666666667776 556555555888888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=8.3e-26  Score=196.53  Aligned_cols=202  Identities=21%  Similarity=0.236  Sum_probs=133.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~  153 (281)
                      ++++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.. +.++++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            56677777777777665566777777777777777777666666777777777777777776 44443 46777777777


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCC---------------------------------------------
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP---------------------------------------------  188 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------------------------------------------  188 (281)
                      +++|.+.+..|..+..+++|+.|++++|.+++...                                             
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            77777776556666777777777777766553210                                             


Q ss_pred             --------------ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776          189 --------------SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       189 --------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  254 (281)
                                    ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.
T Consensus       228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred             ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence                          123344566666666666665556666666777777777776663 45555566677777777777


Q ss_pred             ccccCChhhhhCCCCCcEEEcccccC
Q 038776          255 IEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       255 l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +. .+|..+.. +++|+.|++++|++
T Consensus       307 l~-~~~~~~~~-l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          307 LL-HVERNQPQ-FDRLENLYLDHNSI  330 (390)
T ss_dssp             CC-CCGGGHHH-HTTCSEEECCSSCC
T ss_pred             ce-ecCccccc-cCcCCEEECCCCcc
Confidence            66 55555554 66677776666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.4e-27  Score=198.67  Aligned_cols=200  Identities=23%  Similarity=0.301  Sum_probs=170.9

Q ss_pred             CcEEEEEcCCCCcceecCccC--cCCCCCCEEECCCCCCccCCchhccCC-----CcccEeeccCCcccccCCccCcCCC
Q 038776           75 QRVTILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIPPQIGHL-----RRLQILYLQINSFDGEIPASISNCS  147 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~l~~l~  147 (281)
                      .+++.|++++|.+.+.+|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..|..++.++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            678999999999998888876  8899999999999999966 8777776     8999999999999977778999999


Q ss_pred             CCcEEEcccCCCCCC--Cchhc--CCCCCCCEEeCcCCcccc--cCC-ccccCCCCCCeEEcccCCCccccc-ccCCCCC
Q 038776          148 NLLVVSLALNHLAGK--IPSEF--GSLSKLQFLSTTANNLTG--NIP-SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLK  219 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~  219 (281)
                      +|++|++++|++.+.  .|..+  ..+++|++|++++|++++  ..+ ..+..+++|++|++++|.+++..| ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999998754  34454  889999999999999983  222 334578999999999999997765 4566789


Q ss_pred             CCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          220 NLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       220 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +. .+++|+.|++++|+++
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~-~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD-ELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TT-TSCEEEEEECTTCTTT
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hh-hCCCCCEEeccCCCCC
Confidence            9999999999998 7787776  8999999999999954 65 54 4999999999999985

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.1e-27  Score=201.53  Aligned_cols=185  Identities=19%  Similarity=0.234  Sum_probs=149.8

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc--cCcCCCCCcE
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA--SISNCSNLLV  151 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~  151 (281)
                      .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.  .+..+++|++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence            478999999999999877888999999999999999998555556899999999999999998 5555  7888999999


Q ss_pred             EEcccCC-CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC------------------------
Q 038776          152 VSLALNH-LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG------------------------  206 (281)
Q Consensus       152 L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------------------  206 (281)
                      |++++|. +....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.                        
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            9999984 665556678889999999999998887777777776666665555554                        


Q ss_pred             Cccc-------------------------------ccccCCCCCCCCeEecccCcCcCCCCcc-ccCCCCCCEEEcccCc
Q 038776          207 FYGS-------------------------------IPDTFGGLKNLVNLSLVVNNLSGTIPPL-IFNISSIQTFDVGSNY  254 (281)
Q Consensus       207 ~~~~-------------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~  254 (281)
                      +++.                               +|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|+
T Consensus       234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            4321                               2334567889999999999999 56655 5899999999999999


Q ss_pred             ccccCC
Q 038776          255 IEGEMP  260 (281)
Q Consensus       255 l~~~~p  260 (281)
                      +.+..|
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            997665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=7.6e-26  Score=201.75  Aligned_cols=206  Identities=21%  Similarity=0.159  Sum_probs=138.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            56777777777777666667777777777777777776444445667777777777777776555666666666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCC------------------------ccc
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF------------------------YGS  210 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~------------------------~~~  210 (281)
                      ++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+                        .+.
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence            66666655555566666666666666655533333344444555555544444                        444


Q ss_pred             ccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       211 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|.......+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|+++
T Consensus       216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCS
T ss_pred             cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccc
Confidence            44444444577788888888885444678899999999999999995544444 45999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=4.1e-26  Score=198.45  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=118.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            66788999999888554445788999999999999999777779999999999999999999777778999999999999


Q ss_pred             ccCCCCCCCchh-cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          155 ALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       155 ~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      ++|.+. .+|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            999999 45544 6899999999999999997777789999999999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1e-25  Score=191.70  Aligned_cols=203  Identities=22%  Similarity=0.231  Sum_probs=155.0

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCch----------------------hccCCCcccEeecc
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP----------------------QIGHLRRLQILYLQ  131 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------~~~~l~~L~~L~l~  131 (281)
                      .++++.|++++|.+.+..|..+..+++|++|++++|.+. .+|.                      .+..+++|++|+++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            367888888888888777778888888888888888766 3333                      34455556666666


Q ss_pred             CCcccc--cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776          132 INSFDG--EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       132 ~n~~~~--~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      +|.+..  ..+..+..+++|++|++++|.+. .+|..+.  ++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            665532  34455666666777777666666 3444332  678888888888887777889999999999999999998


Q ss_pred             cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh-----CCCCCcEEEcccccCC
Q 038776          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT-----TLPNLRIFSITGNQFT  281 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-----~~~~L~~L~l~~N~l~  281 (281)
                      ..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..     ..+.++.+++++|++.
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            77778999999999999999998 78888999999999999999998443333321     1478999999999873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=2.3e-25  Score=182.38  Aligned_cols=192  Identities=24%  Similarity=0.265  Sum_probs=167.5

Q ss_pred             CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC
Q 038776           61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p  140 (281)
                      .|+.|.|..|..   ..+.++.+++.+. .+|..+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            467888899953   3457899999888 5666665  689999999999998788889999999999999999997777


Q ss_pred             ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCC
Q 038776          141 ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN  220 (281)
Q Consensus       141 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  220 (281)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            78899999999999999999776677899999999999999999665566788999999999999999776778999999


Q ss_pred             CCeEecccCcCcCCCCccccCCCCCCEEEcccCccccc
Q 038776          221 LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  258 (281)
                      |+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999977777889999999999999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=4.5e-26  Score=208.89  Aligned_cols=204  Identities=22%  Similarity=0.207  Sum_probs=174.2

Q ss_pred             CcEEEEEcCCCCccee--cCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAGT--LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~  151 (281)
                      ++++.+++++|.+.+.  .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            6778888888887755  3667788888888888888877 466778888999999999998886666 57888999999


Q ss_pred             EEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCc
Q 038776          152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  230 (281)
                      |++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            9999999988888888999999999999999887 367888899999999999999988888889999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCC-CCcEEEcccccCC
Q 038776          231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLP-NLRIFSITGNQFT  281 (281)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~~N~l~  281 (281)
                      +++..|..+..+++|++|++++|+++ .+|..+.. ++ +|+.|++++|+++
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~-l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH-FPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG-SCTTCCEEECCSCCCC
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh-hcccCcEEEccCCCcc
Confidence            99877888999999999999999998 77777665 76 5999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1e-25  Score=206.46  Aligned_cols=204  Identities=23%  Similarity=0.234  Sum_probs=129.9

Q ss_pred             CcEEEEEcCCCCcceec--CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAGTL--PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~  151 (281)
                      ++++.|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            34555555555554433  44455566666666666665555555566666666666666666544433 2566666666


Q ss_pred             EEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc---CCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776          152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN---IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  228 (281)
                      |++++|.+.+..|..+..+++|+.|++++|.+.+.   .+..+..+++|++|++++|.+++..|..++.+++|+.|++++
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence            66666666655566666667777777777766542   224466667777777777777666666777777777777777


Q ss_pred             CcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          229 NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |++++..|..+..+++| +|++++|.+++..|..+.. +++|+.|++++|++
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI-LSQQRTINLRQNPL  559 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH-HHTSSEEECTTCCE
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhccc-CCCCCEEeCCCCCc
Confidence            77776667777777777 7777777777554444444 67777777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=9.7e-27  Score=214.38  Aligned_cols=203  Identities=23%  Similarity=0.374  Sum_probs=178.3

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC-Ccc-CCchhccCC------CcccEeeccCCcccccCCc--cC
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS-FTN-EIPPQIGHL------RRLQILYLQINSFDGEIPA--SI  143 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~p~--~l  143 (281)
                      ..+++.|++++|.+.+.+|..++.+++|++|++++|. +++ .+|..+..+      ++|++|++++|.++ .+|.  .+
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence            3678999999999999999999999999999999998 887 789888776      99999999999999 8888  89


Q ss_pred             cCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCC-CCeEEcccCCCcccccccCCCCC--C
Q 038776          144 SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLK--N  220 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~  220 (281)
                      +++++|++|++++|.+.|.+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+  +
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            999999999999999998888 8888999999999999988 78888888888 999999999988 7787777654  8


Q ss_pred             CCeEecccCcCcCCCCcccc-------CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          221 LVNLSLVVNNLSGTIPPLIF-------NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       221 L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      |+.|++++|.+++.+|..+.       .+++|++|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            89999999999888887777       6778888999988888 778777777888888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=6.2e-25  Score=201.35  Aligned_cols=204  Identities=23%  Similarity=0.220  Sum_probs=112.2

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEEEc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVVSL  154 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l  154 (281)
                      +++.|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            3444444444444 33444444444455555544444333444444455555555555444333332 455555555555


Q ss_pred             ccCCCCCCC--chhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccc-cCCCCCCCCeEecccCcC
Q 038776          155 ALNHLAGKI--PSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       155 ~~n~~~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~  231 (281)
                      ++|.+.+..  +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            555555332  44455566666666666666555555566666666666666666544433 256666666666666666


Q ss_pred             cCCCCccccCCCCCCEEEcccCccccc-C--ChhhhhCCCCCcEEEcccccCC
Q 038776          232 SGTIPPLIFNISSIQTFDVGSNYIEGE-M--PLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       232 ~~~~~~~l~~~~~L~~L~l~~n~l~~~-~--p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ++..|..+..+++|++|++++|.+++. +  +..+.. +++|+.|++++|+++
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-LGRLEILVLSFCDLS  489 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-CTTCCEEECTTSCCC
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-CCCccEEECCCCccC
Confidence            666666666667777777777766642 1  122333 677777777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=4.2e-25  Score=182.93  Aligned_cols=194  Identities=22%  Similarity=0.244  Sum_probs=145.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++++.+.. + +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            567788888887763 2 247778888888888888774 3 36778888888888888888555556778888888888


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            88888866666678888888888888888765555667788888888888888866666677888888888888888876


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+..+..+++|++|++++|++.+.        +++|+.+++++|.+
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKH  234 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHT
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhC
Confidence            666677888888888888877643        33455555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.8e-24  Score=178.90  Aligned_cols=184  Identities=24%  Similarity=0.253  Sum_probs=163.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|+++++.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            56899999999999776678999999999999999998555566789999999999999999655567889999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            99999977777789999999999999999966556688999999999999999977777789999999999999999976


Q ss_pred             CCccccCCCCCCEEEcccCccccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~  258 (281)
                      .+..+..+++|+.|++++|++...
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CHHHhccccCCCEEEecCCCeeCC
Confidence            666788899999999999998643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3e-25  Score=203.45  Aligned_cols=203  Identities=20%  Similarity=0.154  Sum_probs=174.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccC--CchhccCCCcccEeeccCCcccccCCccCcCCCCCcEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  152 (281)
                      ++++.++++++...+..  .+..+++|++|++++|.+.+.  .|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus       328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL  404 (606)
T ss_dssp             SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEE
T ss_pred             CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCee
Confidence            44555555555333322  456778888888888888754  4778889999999999999988 577889999999999


Q ss_pred             EcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc-cccccCCCCCCCCeEecccCc
Q 038776          153 SLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       153 ~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|.
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence            999999997777 578999999999999999998888899999999999999999987 478889999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++..|..+..+++|++|++++|++++..|..+.. +++|+.|++++|+++
T Consensus       485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC
T ss_pred             CCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc
Confidence            99888889999999999999999999877877766 999999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=2.2e-24  Score=176.49  Aligned_cols=179  Identities=22%  Similarity=0.280  Sum_probs=158.0

Q ss_pred             CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776           99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  178 (281)
                      ...++++++++.+. .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35688999999998 6777654  68999999999999777778999999999999999999877778999999999999


Q ss_pred             cCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccccc
Q 038776          179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  258 (281)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++ 
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence            9999997666788999999999999999997777778899999999999999997666689999999999999999995 


Q ss_pred             CChhhhhCCCCCcEEEcccccCC
Q 038776          259 MPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       259 ~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|...+..+++|+.|++++|+|+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHHhCCCCCCEEEeeCCcee
Confidence            44444445999999999999974

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=189.73  Aligned_cols=200  Identities=21%  Similarity=0.244  Sum_probs=168.6

Q ss_pred             CcEEEEEcCCCCcceecCccC--cCCCCCCEEECCCCCCccCCc----hhccCCCcccEeeccCCcccccCCccCcCCCC
Q 038776           75 QRVTILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIP----PQIGHLRRLQILYLQINSFDGEIPASISNCSN  148 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~  148 (281)
                      .+++.|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            358999999999998888887  889999999999999986554    34567999999999999998777788999999


Q ss_pred             CcEEEcccCCCCCC--Cc--hhcCCCCCCCEEeCcCCcccccCCc----cccCCCCCCeEEcccCCCcccccccCCCC--
Q 038776          149 LLVVSLALNHLAGK--IP--SEFGSLSKLQFLSTTANNLTGNIPS----SLGNLSSLRGLSLSRNGFYGSIPDTFGGL--  218 (281)
Q Consensus       149 L~~L~l~~n~~~~~--~p--~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~l--  218 (281)
                      |++|++++|++.+.  ++  ..+..+++|++|++++|+++ .++.    .+..+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999997642  22  22468999999999999997 3232    24678999999999999998878777766  


Q ss_pred             -CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          219 -KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       219 -~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       ++|++|++++|.++ .+|..+.  ++|++|++++|++++ +|. + ..+++|+.|++++|+|+
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~-~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P-DELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T-TSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h-hhCCCccEEECcCCCCC
Confidence             69999999999999 6777764  799999999999995 443 3 44899999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=2.4e-24  Score=199.93  Aligned_cols=205  Identities=25%  Similarity=0.291  Sum_probs=110.1

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .++.+++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            46666777777776667777777788888888887765554 46677777777777777665444444444444444444


Q ss_pred             ccCCCC--CCCchhcCCCCCCCEEeCcCCcccccCCccccC--------------------------------CCCCCeE
Q 038776          155 ALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN--------------------------------LSSLRGL  200 (281)
Q Consensus       155 ~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~--------------------------------l~~L~~L  200 (281)
                      ++|.+.  +..|..+..+++|+.|++++|.+++..+..+..                                +++|++|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            444443  233444444444444444444444333333444                                4455555


Q ss_pred             EcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       201 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+...+++|+.+++++|++
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            55555554222233455555555555555555333334445555555555555555322222221245555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.8e-25  Score=199.78  Aligned_cols=205  Identities=17%  Similarity=0.172  Sum_probs=167.7

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..|..+++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            57889999999988777788889999999999999998777788899999999999999988655566888999999999


Q ss_pred             ccCCCCC-CCchhcCCCCCCCEEeCcCCcccccCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776          155 ALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       155 ~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      ++|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9998885 356678889999999999988544555 57888899999999999998888888888999999999998876


Q ss_pred             CCCCcc-ccCCCCCCEEEcccCcccccC--ChhhhhCCCCCcEEEcccccC
Q 038776          233 GTIPPL-IFNISSIQTFDVGSNYIEGEM--PLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       233 ~~~~~~-l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       .+|.. +..+++|++|++++|.+++..  |..+...+++|+.|++++|.+
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence             34443 456888999999999888532  333444578899999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-24  Score=199.38  Aligned_cols=136  Identities=21%  Similarity=0.218  Sum_probs=120.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            45778899999888655556788999999999999999878889999999999999999999777778899999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccc
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  210 (281)
                      ++|.+.+..+..++.+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            99999955445579999999999999999988788899999999999999988753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=4e-25  Score=199.09  Aligned_cols=83  Identities=25%  Similarity=0.272  Sum_probs=61.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-cCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-EIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~  153 (281)
                      .+++.|++++|.+.+..|..|..+++|++|++++|.+. .+|..  .+++|++|++++|.+++ .+|..++++++|++|+
T Consensus        45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~  121 (520)
T 2z7x_B           45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG  121 (520)
T ss_dssp             TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred             ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence            66777777777777666777777777888888777777 55554  67778888888877775 3567777777777777


Q ss_pred             cccCCCC
Q 038776          154 LALNHLA  160 (281)
Q Consensus       154 l~~n~~~  160 (281)
                      +++|.+.
T Consensus       122 L~~n~l~  128 (520)
T 2z7x_B          122 LSTTHLE  128 (520)
T ss_dssp             EEESSCC
T ss_pred             ecCcccc
Confidence            7777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=7.9e-25  Score=207.75  Aligned_cols=111  Identities=21%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             CcEEEEEcCCCCcceec-CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc--CcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAGTL-PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS--ISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~  151 (281)
                      .+++.|++++|...+.+ |..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..  ++++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            44455555555333333 444555555555555555555555555555555666666555555434433  555566666


Q ss_pred             EEcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccc
Q 038776          152 VSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTG  185 (281)
Q Consensus       152 L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~  185 (281)
                      |++++|.+.+..+ ..++++++|++|++++|.+++
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            6666665554333 345566666666666555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=4e-24  Score=177.02  Aligned_cols=194  Identities=19%  Similarity=0.248  Sum_probs=164.6

Q ss_pred             EcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCC
Q 038776           81 DLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA  160 (281)
Q Consensus        81 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~  160 (281)
                      ++..+.+.+..  ....+++|+.|++++|.+. .+ ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           25 NLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred             HhcCccccccc--ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC
Confidence            34444444332  2456789999999999987 33 358899999999999999984 3 47889999999999999999


Q ss_pred             CCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCcccc
Q 038776          161 GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF  240 (281)
Q Consensus       161 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  240 (281)
                      +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..++
T Consensus        99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A           99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence            77777789999999999999999977667789999999999999999977777789999999999999999977777789


Q ss_pred             CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       241 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+++|++|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence            99999999999999996555 44445999999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.5e-24  Score=197.15  Aligned_cols=89  Identities=24%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC--CCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776          192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       192 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  269 (281)
                      ..+++|++|++++|.+++.+|..++.+++|+.|++++|++++  .+|..+..+++|++|++++|.+++.+|...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            344566666666666665566666666666666666666664  223445666666677777766665455554444555


Q ss_pred             CcEEEcccccC
Q 038776          270 LRIFSITGNQF  280 (281)
Q Consensus       270 L~~L~l~~N~l  280 (281)
                      |+.|++++|++
T Consensus       430 L~~L~l~~n~l  440 (562)
T 3a79_B          430 ILVLNLSSNML  440 (562)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCCC
Confidence            66666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=8.4e-25  Score=197.00  Aligned_cols=59  Identities=31%  Similarity=0.447  Sum_probs=37.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCcc-CCchhccCCCcccEeeccCCccc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFD  136 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~  136 (281)
                      ++++.|++++|.+. .+|..  .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.
T Consensus        69 ~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           69 QELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             TTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            56666777776666 34443  56667777777776664 35566666666666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2.7e-24  Score=183.04  Aligned_cols=204  Identities=24%  Similarity=0.201  Sum_probs=153.6

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      .++++.|++++|.+.+..|..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            377899999999998877888999999999999999887 5665443  6778888888777744444567777777777


Q ss_pred             cccCCCCC--CCchhcCCC--------------------CCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccc
Q 038776          154 LALNHLAG--KIPSEFGSL--------------------SKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI  211 (281)
Q Consensus       154 l~~n~~~~--~~p~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  211 (281)
                      +++|.+..  ..|..+..+                    ++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            77777642  333333322                    46777777777777666677888889999999999988777


Q ss_pred             cccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhC-----CCCCcEEEcccccCC
Q 038776          212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTT-----LPNLRIFSITGNQFT  281 (281)
Q Consensus       212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~~L~~L~l~~N~l~  281 (281)
                      +..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+...     .++|+.|++++|+++
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            777888889999999999888 678888888899999999998884433333221     466888888888763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=2.9e-25  Score=209.32  Aligned_cols=202  Identities=21%  Similarity=0.326  Sum_probs=149.0

Q ss_pred             CCcEEEEEcCCCCcce-----------------ecCccCc--CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc
Q 038776           74 HQRVTILDLQNLKLAG-----------------TLPPHIG--NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS  134 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  134 (281)
                      ..+++.|++++|.+.+                 .+|..++  .+++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            3678889999998887                 3788877  88899999999998888888888888899999998887


Q ss_pred             -ccc-cCCccCcCC-------CCCcEEEcccCCCCCCCch--hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776          135 -FDG-EIPASISNC-------SNLLVVSLALNHLAGKIPS--EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS  203 (281)
Q Consensus       135 -~~~-~~p~~l~~l-------~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  203 (281)
                       +++ .+|..++.+       ++|++|++++|.+. .+|.  .++.+++|+.|++++|.++ .+| .+..+++|++|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             776 667654443       48888888888888 7777  7888888888888888877 666 67777777777777


Q ss_pred             cCCCcccccccCCCCCC-CCeEecccCcCcCCCCccccCCC-------------------------------CCCEEEcc
Q 038776          204 RNGFYGSIPDTFGGLKN-LVNLSLVVNNLSGTIPPLIFNIS-------------------------------SIQTFDVG  251 (281)
Q Consensus       204 ~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~~~-------------------------------~L~~L~l~  251 (281)
                      +|.++ .+|..+..+++ |+.|++++|.++ .+|..+...+                               +|+.|+++
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            77777 67766777776 777777777766 4554443332                               45555555


Q ss_pred             cCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       252 ~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|.++ .+|..++..+++|+.|++++|+++
T Consensus       682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          682 YNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             SSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             CCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence            55555 556666555677777777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=1.7e-24  Score=175.82  Aligned_cols=198  Identities=16%  Similarity=0.139  Sum_probs=169.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC-CccCCchhccCCCcccEeeccC-CcccccCCccCcCCCCCcEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS-FTNEIPPQIGHLRRLQILYLQI-NSFDGEIPASISNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L  152 (281)
                      ..++.|+++++.+.+..+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            578999999999997777789999999999999997 8756666899999999999998 99986666788999999999


Q ss_pred             EcccCCCCCCCchhcCCCCCCC---EEeCcCC-cccccCCccccCCCCCC-eEEcccCCCcccccccCCCCCCCCeEecc
Q 038776          153 SLALNHLAGKIPSEFGSLSKLQ---FLSTTAN-NLTGNIPSSLGNLSSLR-GLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       153 ~l~~n~~~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  227 (281)
                      ++++|.+.+ +|. +..+++|+   .|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            999999985 676 88888888   9999999 88866566788999999 9999999998 555544344899999999


Q ss_pred             cCc-CcCCCCccccCC-CCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776          228 VNN-LSGTIPPLIFNI-SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       228 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +|+ +++..+..+..+ ++|+.|++++|.++ .+|..   .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            995 886666778888 99999999999998 66654   38899999999873

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.4e-27  Score=198.62  Aligned_cols=200  Identities=23%  Similarity=0.283  Sum_probs=161.3

Q ss_pred             EEEEEcCCCCcc-eecCccCc-------CCCCCCEEECCCCCCccCCchhc--cCCCcccEeeccCCcccccCCccCcCC
Q 038776           77 VTILDLQNLKLA-GTLPPHIG-------NLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINSFDGEIPASISNC  146 (281)
Q Consensus        77 l~~l~l~~~~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~l~~l  146 (281)
                      ++.++++++.+. ..+|..+.       .+++|++|++++|.+.+.+|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            455666676663 34555444       68899999999999998888876  8899999999999999855 7777666


Q ss_pred             -----CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc--CCccc--cCCCCCCeEEcccCCCcc--ccc-cc
Q 038776          147 -----SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN--IPSSL--GNLSSLRGLSLSRNGFYG--SIP-DT  214 (281)
Q Consensus       147 -----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~  214 (281)
                           ++|++|++++|++.+..|..++.+++|++|++++|++.+.  .|..+  ..+++|++|++++|.+++  .++ ..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 8999999999999977778899999999999999998754  33444  788999999999999883  222 33


Q ss_pred             CCCCCCCCeEecccCcCcCCCC-ccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          215 FGGLKNLVNLSLVVNNLSGTIP-PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       215 ~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.   ++|+.|++++|+++
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD  287 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCC
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCC
Confidence            4577899999999999987664 45666789999999999998 7887664   78999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.3e-24  Score=178.81  Aligned_cols=195  Identities=21%  Similarity=0.222  Sum_probs=166.0

Q ss_pred             cCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC
Q 038776           82 LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG  161 (281)
Q Consensus        82 l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~  161 (281)
                      -.+.++. .+|..+.  +.+++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            3344444 4555553  579999999999997777789999999999999999996667789999999999999999997


Q ss_pred             CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccc-ccccCCCCCCCCeEecccCcCcCCCCcccc
Q 038776          162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF  240 (281)
Q Consensus       162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  240 (281)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+.
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            7778899999999999999999976666789999999999999999863 688999999999999999999977667777


Q ss_pred             CCCCCC----EEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          241 NISSIQ----TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       241 ~~~~L~----~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+++|+    +|++++|.+. .++...+. ..+|+.|++++|+++
T Consensus       171 ~l~~L~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLK  213 (276)
T ss_dssp             HHHTCTTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCS
T ss_pred             hhhhccccceeeecCCCccc-ccCccccC-CCcccEEECCCCcee
Confidence            666666    8999999998 45555555 568999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=7.4e-24  Score=196.69  Aligned_cols=186  Identities=20%  Similarity=0.224  Sum_probs=140.1

Q ss_pred             CcEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCc--------------------------cCCchhccCCCcccE
Q 038776           75 QRVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFT--------------------------NEIPPQIGHLRRLQI  127 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~  127 (281)
                      ++++.|++++|.+.+.++ ..+..+++|++|++++|.+.                          +.+|..+..+++|++
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            456667777666665444 34555556666666555543                          345666777788888


Q ss_pred             eeccCCcccccCCccCcCCCCCcEEEcccCCCCCCC----c----hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776          128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKI----P----SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG  199 (281)
Q Consensus       128 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~----p----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  199 (281)
                      |++++|.+++..+..+..+++|++|++++|.+.+..    |    ..+..+++|+.|++++|+++...+..+..+++|++
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            888888887555566788888888888888876421    1    23678888999999999888433346889999999


Q ss_pred             EEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCcccc-CCCCCCEEEcccCcccccCC
Q 038776          200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       200 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~p  260 (281)
                      |++++|.+++..+..+..+++|+.|++++|++++..+..+. .+++|+.|++++|++....+
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999976667788999999999999999977766676 68899999999999886544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.4e-25  Score=196.59  Aligned_cols=200  Identities=22%  Similarity=0.220  Sum_probs=144.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-------------  141 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-------------  141 (281)
                      ++++.|++++|.+.+..|..|..+++|++|++++|.+.+..|  +..+++|++|++++|.+++..+.             
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            356666777766665555566666677777777766664333  56666666666666655421110             


Q ss_pred             ---cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcccc-CCCCCCeEEcccCCCcccccccCCC
Q 038776          142 ---SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG-NLSSLRGLSLSRNGFYGSIPDTFGG  217 (281)
Q Consensus       142 ---~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~  217 (281)
                         ....+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence               012357788888888888877777788888888888888888877776665 688889999999888755 32 335


Q ss_pred             CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          218 LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC-CTTCCEEECTTCCBC
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhcc-CCCCCEEEcCCCCCc
Confidence            8889999999999885 4555888889999999999988 47766654 889999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=197.00  Aligned_cols=203  Identities=22%  Similarity=0.239  Sum_probs=172.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCC--chhccCCCcccEeeccCCcccccCCccCcCCCCCcEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI--PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  152 (281)
                      ++++.++++++.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus       325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L  401 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  401 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence            4455566666655544333  57789999999999987543  6788899999999999999984 45558999999999


Q ss_pred             EcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc-ccccccCCCCCCCCeEecccCc
Q 038776          153 SLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       153 ~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|+
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            999999986655 46889999999999999999888888999999999999999997 5789999999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD-RLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh-cccCCcEEEecCCccc
Confidence            9988899999999999999999999965554444 4999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9e-24  Score=176.47  Aligned_cols=181  Identities=22%  Similarity=0.292  Sum_probs=161.2

Q ss_pred             cCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776           94 HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL  173 (281)
Q Consensus        94 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  173 (281)
                      .+..++++++++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++ ++.. +.+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence            3677889999999999998 6776553  689999999999997778889999999999999999984 3433 789999


Q ss_pred             CEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776          174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN  253 (281)
Q Consensus       174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  253 (281)
                      +.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999998 77888899999999999999999777788999999999999999999777777889999999999999


Q ss_pred             cccccCChhhhhCCCCCcEEEcccccCC
Q 038776          254 YIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       254 ~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++ .+|...+..+++|+.|++++|+++
T Consensus       159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          159 NLT-ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence            999 677777667999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=9.5e-24  Score=177.84  Aligned_cols=190  Identities=22%  Similarity=0.350  Sum_probs=159.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence            678899999998874 44 5888999999999999998 4455 8999999999999999884 44 6889999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence            9999984 443 89999999999999999854 33 78899999999999999854 33 88899999999999999854


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       +. +..+++|++|++++|.+++..+  +. .+++|+.|++++|+++
T Consensus       189 -~~-l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          189 -SP-LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -GG-GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEE
T ss_pred             -hh-hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeee
Confidence             33 7889999999999999985442  44 4999999999999863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=8.2e-25  Score=185.12  Aligned_cols=192  Identities=22%  Similarity=0.222  Sum_probs=139.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+  +..+++|++|++++|.+.+ ++    ..++|++|++++|.+++..+.   .+++|++|++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence            445555555555554332  5555555555555555542 11    225556666666655533222   3678899999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      ++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence            9999887666678889999999999999987666655 4688999999999998854 33 3358899999999999984


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       +|..+..+++|++|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus       206 -l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~-l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          206 -MGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -ECGGGGGGTTCSEEECTTSCCC-EECTTCCC-CTTCCEEECTTCCCB
T ss_pred             -chhhhcccCcccEEECcCCccc-chhhHhhc-CCCCCEEEccCCCcc
Confidence             5566888999999999999998 67877655 899999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=7.7e-25  Score=198.39  Aligned_cols=181  Identities=21%  Similarity=0.255  Sum_probs=107.6

Q ss_pred             CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776           99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  178 (281)
                      ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            45666666666666555555666666666666666666555555666666666666666666544445666666666666


Q ss_pred             cCCcccc-cCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          179 TANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       179 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      ++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            6666653 234455666666666666665333333 35556666666666666666555666666666666666666654


Q ss_pred             ccCChhhhhCCCCCcEEEcccccC
Q 038776          257 GEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       .+|..+...+++|+.|++++|++
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBC
T ss_pred             -ccchhhHhhcccccEEEccCCcc
Confidence             44444444456666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=7.3e-24  Score=201.14  Aligned_cols=205  Identities=21%  Similarity=0.219  Sum_probs=138.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchh--ccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQ--IGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~  151 (281)
                      .+++.|++++|.+.+..|..|..+++|++|++++|.+.+.+|..  +..+++|++|++++|.+.+..+ ..++++++|++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            67889999999998888888999999999999999888766654  8889999999999998875544 56888888888


Q ss_pred             EEcccCCCCCCCchhcCCC--------------------------CC------CCEEeCcCC------------------
Q 038776          152 VSLALNHLAGKIPSEFGSL--------------------------SK------LQFLSTTAN------------------  181 (281)
Q Consensus       152 L~l~~n~~~~~~p~~~~~l--------------------------~~------L~~L~l~~n------------------  181 (281)
                      |++++|.+.+..+..+..+                          ++      |+.|++++|                  
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~  232 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ  232 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence            8888887765444333211                          11      444444444                  


Q ss_pred             --------------------------------------------cccccCCccccCCCCCCeEEcccCCCcccccccCCC
Q 038776          182 --------------------------------------------NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG  217 (281)
Q Consensus       182 --------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  217 (281)
                                                                  .+.+..|..+..+++|++|++++|.+++..|..+..
T Consensus       233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  312 (844)
T 3j0a_A          233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG  312 (844)
T ss_dssp             BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred             ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence                                                        333333444455556666666666666555556666


Q ss_pred             CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          218 LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+.+. +...+..+++|+.|++++|.+
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC-CSSCSCSCCCCCEEEEETCCS
T ss_pred             CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc-ChhhhcCCCCCCEEECCCCCC
Confidence            66666666666666655566666666666666666666533 333333366777777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=6.3e-24  Score=193.12  Aligned_cols=159  Identities=23%  Similarity=0.182  Sum_probs=120.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            56778888888888776777888888888888888887666677888888888888888887666677888888888888


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCC----CeEecccC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n  229 (281)
                      ++|.+....+..++.+++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            8888875444457888888888888888775 357778888888888888888776656555555555    56666666


Q ss_pred             cCcC
Q 038776          230 NLSG  233 (281)
Q Consensus       230 ~~~~  233 (281)
                      .+++
T Consensus       188 ~l~~  191 (570)
T 2z63_A          188 PMNF  191 (570)
T ss_dssp             CCCE
T ss_pred             Ccee
Confidence            5543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.91  E-value=1.4e-23  Score=189.64  Aligned_cols=196  Identities=21%  Similarity=0.322  Sum_probs=164.6

Q ss_pred             CCCCCCCCc-----cccce-eeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEe
Q 038776           55 SWNDSIHFC-----EWYGV-TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL  128 (281)
Q Consensus        55 ~w~~~~~~c-----~~~g~-~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  128 (281)
                      .|.....+|     .|.++ .|..  .+++.|+++++.+.+ +|..+.  ++|++|++++|.+. .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            354444556     67887 5653  578999999999986 777663  78999999999998 777   468999999


Q ss_pred             eccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776          129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       129 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      ++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.++
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            999999995 777 655  99999999999995 666   68999999999999985 665   5789999999999998


Q ss_pred             ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCC-------CEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI-------QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       209 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      + +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..++. +++|+.|++++|+++
T Consensus       174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS  243 (571)
T ss_dssp             C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred             C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence            5 776 65  89999999999999 6776 544  67       99999999999 79999988 999999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.7e-23  Score=190.32  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=132.3

Q ss_pred             cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC--CCchhcCCCCCCCEEeCcCCcccccCCc-cccCCCC
Q 038776          120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG--KIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNLSS  196 (281)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~  196 (281)
                      ..+++|++|++++|.+++..|..+.++++|++|++++|++++  ..|..+..+++|+.|++++|.+++.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            577889999999999887788888899999999999998885  2345688899999999999999875554 4777889


Q ss_pred             CCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776          197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       197 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      |++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|...+..+++|+.|+++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            99999999998877776654  78999999999998 67877779999999999999998 6787744559999999999


Q ss_pred             cccCC
Q 038776          277 GNQFT  281 (281)
Q Consensus       277 ~N~l~  281 (281)
                      +|+++
T Consensus       506 ~N~~~  510 (562)
T 3a79_B          506 DNPWD  510 (562)
T ss_dssp             SCCBC
T ss_pred             CCCcC
Confidence            99874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=5.8e-23  Score=175.68  Aligned_cols=174  Identities=21%  Similarity=0.329  Sum_probs=110.6

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ .+. +..+++|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~  246 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLT  246 (347)
T ss_dssp             GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCC
Confidence            334444444444444443 2222 44445555555555544422 22 5566777777777777763 333 67777777


Q ss_pred             EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776          175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  254 (281)
                      .|++++|.+++.  ..+..+++|++|++++|.+++.  +.+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus       247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            777777777642  4566777788888888877643  346677888888888888877777777788888888888888


Q ss_pred             ccccCChhhhhCCCCCcEEEcccccCC
Q 038776          255 IEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       255 l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++..|  +.. +++|+.|++++|+|+
T Consensus       323 l~~~~~--~~~-l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 ITDIRP--LAS-LSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCGG--GGG-CTTCSEESSSCC---
T ss_pred             cccccC--hhh-hhccceeehhhhccc
Confidence            875444  443 788888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.9e-23  Score=169.67  Aligned_cols=185  Identities=18%  Similarity=0.238  Sum_probs=156.7

Q ss_pred             ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-ccccCCccCcCCCCCcEEEccc-CCCCCCCchhc
Q 038776           90 TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-FDGEIPASISNCSNLLVVSLAL-NHLAGKIPSEF  167 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~  167 (281)
                      .+|. +.  +.+++|++++|.+++..+..|..+++|++|++++|. +++..+..+.++++|++|++++ |.++...+..+
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 43  489999999999997666789999999999999997 8755556889999999999998 99996666778


Q ss_pred             CCCCCCCEEeCcCCcccccCCccccCCCCCC---eEEcccC-CCcccccccCCCCCCCC-eEecccCcCcCCCCccccCC
Q 038776          168 GSLSKLQFLSTTANNLTGNIPSSLGNLSSLR---GLSLSRN-GFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPLIFNI  242 (281)
Q Consensus       168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~  242 (281)
                      ..+++|+.|++++|.+++ +|. +..+++|+   +|++++| .+++..+..+..+++|+ .|++++|.++ .+|......
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~  178 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG  178 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence            999999999999999985 666 88888888   9999999 88866667799999999 9999999998 555544444


Q ss_pred             CCCCEEEcccCc-ccccCChhhhhCC-CCCcEEEcccccCC
Q 038776          243 SSIQTFDVGSNY-IEGEMPLDLGTTL-PNLRIFSITGNQFT  281 (281)
Q Consensus       243 ~~L~~L~l~~n~-l~~~~p~~~~~~~-~~L~~L~l~~N~l~  281 (281)
                      ++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|+++
T Consensus       179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence            899999999995 88 5665555558 99999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=4.8e-22  Score=169.99  Aligned_cols=195  Identities=23%  Similarity=0.345  Sum_probs=129.7

Q ss_pred             CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      .++++.|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+ .+. +..+++|++|+
T Consensus       109 l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~  183 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLS  183 (347)
T ss_dssp             CTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEE
T ss_pred             CCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEE
Confidence            36777888888777643 22 6666777777777765442332 25555566666665555542 221 44455555555


Q ss_pred             cccCCCCCC---------------------CchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776          154 LALNHLAGK---------------------IPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       154 l~~n~~~~~---------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  212 (281)
                      +++|.+.+.                     .+. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ + 
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-  258 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-  258 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-
Confidence            555544421                     111 56667777777777777643 33 6777888888888887774 2 


Q ss_pred             ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          213 DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +.+..+++|+.|++++|.+++ + ..+..+++|++|++++|.+++..|..+.. +++|+.|++++|+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHIT  324 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCC
T ss_pred             hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCccc
Confidence            457778888888888888875 3 45778889999999999988666665655 899999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=2.8e-23  Score=175.64  Aligned_cols=193  Identities=18%  Similarity=0.145  Sum_probs=164.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence            578999999999997777789999999999999999985444  8899999999999999883 33    3489999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC-CCCCCCCeEecccCcCcC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~  233 (281)
                      ++|.+.+..+   ..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus       107 ~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            9999985443   346889999999999997777788889999999999999997777666 478999999999999985


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      . +. ...+++|++|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV  227 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC
T ss_pred             c-cc-ccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc
Confidence            4 33 335899999999999999 56666665 999999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=3e-22  Score=178.03  Aligned_cols=189  Identities=24%  Similarity=0.352  Sum_probs=126.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+  +..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  272 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence            445555555555554322  4455666666666666552 2 345666677777777776663322  666777777777


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+. +. +..+++|+.|++++|++.+..+  +..+++|++|++++|.+++..|  +..+++|+.|++++|.+++.
T Consensus       273 ~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          273 GANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            77777643 33 6677777777777777764322  5677778888888887775554  56777888888888877753


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                        ..+..+++|+.|++++|++++..|  +.. +++|+.|++++|++
T Consensus       347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          347 --SSLANLTNINWLSAGHNQISDLTP--LAN-LTRITQLGLNDQAW  387 (466)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCBCGG--GTT-CTTCCEEECCCEEE
T ss_pred             --hhhccCCCCCEEeCCCCccCccch--hhc-CCCCCEEeccCCcc
Confidence              467778888888888888886655  443 88888888888865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.6e-22  Score=160.76  Aligned_cols=182  Identities=22%  Similarity=0.233  Sum_probs=133.7

Q ss_pred             CccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc
Q 038776           62 FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA  141 (281)
Q Consensus        62 ~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~  141 (281)
                      .|.|.++.|..            +++. .+|..+  .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus         6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            36777777753            2222 233333  35778888888888755555677888888888888888744445


Q ss_pred             cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCC
Q 038776          142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL  221 (281)
Q Consensus       142 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  221 (281)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            56788888888888888885555557788888888888888875555567788888888888888886666667788888


Q ss_pred             CeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh
Q 038776          222 VNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT  265 (281)
Q Consensus       222 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  265 (281)
                      +.|++++|.+.+       .+++|+.|++..|.++|.+|..+..
T Consensus       151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence            888888887764       3457788888888888888876654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.3e-24  Score=187.23  Aligned_cols=208  Identities=20%  Similarity=0.284  Sum_probs=167.5

Q ss_pred             CCcEEEEEcCCCC---cceecCccC-------cCCCCCCEEECCCCCCcc----CCchhccCCCcccEeeccCCcccccC
Q 038776           74 HQRVTILDLQNLK---LAGTLPPHI-------GNLSFLQKLDLRNNSFTN----EIPPQIGHLRRLQILYLQINSFDGEI  139 (281)
Q Consensus        74 ~~~l~~l~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~  139 (281)
                      .++++.|+++++.   +.+.+|..+       ..+++|++|++++|.+.+    .+|..+..+++|++|++++|.+++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            4788999998863   444455444       688999999999999986    46778889999999999999987433


Q ss_pred             Cc----cCcCC---------CCCcEEEcccCCCC-CCCc---hhcCCCCCCCEEeCcCCcccc-----cCCccccCCCCC
Q 038776          140 PA----SISNC---------SNLLVVSLALNHLA-GKIP---SEFGSLSKLQFLSTTANNLTG-----NIPSSLGNLSSL  197 (281)
Q Consensus       140 p~----~l~~l---------~~L~~L~l~~n~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L  197 (281)
                      +.    .+..+         ++|++|++++|.++ ..++   ..+..+++|+.|++++|.+..     ..+..+..+++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence            33    33334         89999999999997 3444   457788999999999999873     233477889999


Q ss_pred             CeEEcccCCCc----ccccccCCCCCCCCeEecccCcCcCC----CCcccc--CCCCCCEEEcccCcccc----cCChhh
Q 038776          198 RGLSLSRNGFY----GSIPDTFGGLKNLVNLSLVVNNLSGT----IPPLIF--NISSIQTFDVGSNYIEG----EMPLDL  263 (281)
Q Consensus       198 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~--~~~~L~~L~l~~n~l~~----~~p~~~  263 (281)
                      ++|++++|.++    +.+|..+..+++|+.|++++|.+++.    ++..+.  .+++|++|++++|.+++    .+|..+
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            99999999996    56788888999999999999999854    456663  48999999999999997    488887


Q ss_pred             hhCCCCCcEEEcccccCC
Q 038776          264 GTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       264 ~~~~~~L~~L~l~~N~l~  281 (281)
                      ..++++|+.|++++|+++
T Consensus       299 ~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHCTTCCEEECTTSBSC
T ss_pred             HhcCCCceEEEccCCcCC
Confidence            565899999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=7.8e-24  Score=180.27  Aligned_cols=202  Identities=21%  Similarity=0.257  Sum_probs=156.9

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccC-CchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      .+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5677888888888766554 55788899999999887754 777788889999999999988877777788889999999


Q ss_pred             cccC-CCCC-CCchhcCCCCCCCEEeCcCC-ccccc-CCccccCCC-CCCeEEcccC--CCc-ccccccCCCCCCCCeEe
Q 038776          154 LALN-HLAG-KIPSEFGSLSKLQFLSTTAN-NLTGN-IPSSLGNLS-SLRGLSLSRN--GFY-GSIPDTFGGLKNLVNLS  225 (281)
Q Consensus       154 l~~n-~~~~-~~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~  225 (281)
                      +++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9988 5664 25666778889999999988 77754 456677788 8999999988  454 45666677788999999


Q ss_pred             cccCc-CcCCCCccccCCCCCCEEEcccCc-ccccCChhhhhCCCCCcEEEcccc
Q 038776          226 LVVNN-LSGTIPPLIFNISSIQTFDVGSNY-IEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       226 l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      +++|. +++..+..+..+++|++|++++|. +.......+.. +++|+.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence            99888 666667788888899999999884 43332224444 888999998887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=8.3e-23  Score=182.44  Aligned_cols=194  Identities=16%  Similarity=0.150  Sum_probs=149.0

Q ss_pred             cCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC
Q 038776           82 LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG  161 (281)
Q Consensus        82 l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~  161 (281)
                      +....+...+.......++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++
T Consensus        17 ~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~   94 (487)
T 3oja_A           17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE   94 (487)
T ss_dssp             CCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred             CchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence            33333433333333445589999999999998788899999999999999999986555  8889999999999887763


Q ss_pred             CCch----------------hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCC-CCCCCCeE
Q 038776          162 KIPS----------------EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-GLKNLVNL  224 (281)
Q Consensus       162 ~~p~----------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L  224 (281)
                      ..+.                ....+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|
T Consensus        95 l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            2111                012356788888888888877777788888899999999988877777765 68889999


Q ss_pred             ecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          225 SLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ++++|.+++. | ....+++|++|++++|.+++ +|..+.. +++|+.|++++|.++
T Consensus       175 ~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          175 NLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS-AAGVTWISLRNNKLV  227 (487)
T ss_dssp             ECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred             ecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence            9999988854 3 23358899999999999985 5555655 899999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6.4e-23  Score=172.91  Aligned_cols=202  Identities=20%  Similarity=0.224  Sum_probs=163.6

Q ss_pred             CcEEEEEcCCCCcceec-Cc--cCcCCCCCCEEECCCCCCccCCchhc--cCCCcccEeeccCCcccccCC----ccCcC
Q 038776           75 QRVTILDLQNLKLAGTL-PP--HIGNLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINSFDGEIP----ASISN  145 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~-~~--~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p----~~l~~  145 (281)
                      .+++.+.+.++.+.... ..  .+..++.|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            34667777777664321 10  12234679999999999998888887  899999999999999986544    34557


Q ss_pred             CCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc--C--CccccCCCCCCeEEcccCCCcccccc----cCCC
Q 038776          146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN--I--PSSLGNLSSLRGLSLSRNGFYGSIPD----TFGG  217 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~  217 (281)
                      +++|++|++++|.+.+..+..++.+++|++|++++|++.+.  +  +..+..+++|++|++++|.++ .++.    .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            99999999999999987788899999999999999998642  2  233468899999999999997 3333    2467


Q ss_pred             CCCCCeEecccCcCcCCCCccccCC---CCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          218 LKNLVNLSLVVNNLSGTIPPLIFNI---SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       218 l~~L~~L~l~~n~~~~~~~~~l~~~---~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+   +++|+.|++++|+++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---PAKLRVLDLSSNRLN  285 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---CSCCSCEECCSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---cCCCCEEECCCCcCC
Confidence            8999999999999998778777776   69999999999999 788766   379999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=6.7e-22  Score=157.10  Aligned_cols=175  Identities=21%  Similarity=0.181  Sum_probs=145.6

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            67899999999998766666889999999999999999666667889999999999999999555556789999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+       .+++|+.|++..|+++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence            9999996666668999999999999999986655668889999999999997763       456899999999999999


Q ss_pred             CCccccCCCCCCEEEcccCcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p  260 (281)
                      +|..++.++.    +...|...+..+
T Consensus       181 ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          181 VRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             eeccCccccC----CccccccCCCcc
Confidence            9988887654    344444443333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=3.2e-21  Score=170.84  Aligned_cols=182  Identities=19%  Similarity=0.177  Sum_probs=108.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+. +  ++.+++|++|++++|.+.+ ++  ++.+++|++|++++|.+++ +|  ++.+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            5566666666666642 2  5666666666666666663 22  5666666666666666663 33  566666666666


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+++. +  ++.+++|+.|++++|...+.+  .+..+++|++|++++|.+++ +|  ++.+++|+.|++++|.+++.
T Consensus       135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            66666642 2  555566666666665443333  24555666666666666654 33  55556666666666666542


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                         .++.+++|++|++++|.+++ +|  +.. +++|+.|++++|++
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~-l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTP-LTQLTYFDCSVNPL  245 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCC
T ss_pred             ---ccccCCCCCEEECcCCcccc-cC--ccc-cCCCCEEEeeCCcC
Confidence               25556666666666666664 44  322 66666666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=4.1e-21  Score=170.13  Aligned_cols=184  Identities=18%  Similarity=0.226  Sum_probs=161.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.+. | .+..+++|++|++++|.+.+ +|  ++.+++|++|++++|.+++ ++  ++++++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence            6789999999999864 5 68899999999999999985 44  8899999999999999985 44  889999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+++ +|  ++.+++|+.|++++|.+++. +  ++.+++|++|++++|...+.+  .++.+++|+.|++++|++++ 
T Consensus       114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred             CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence            9999985 44  88999999999999999863 3  788999999999999766565  47789999999999999996 


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|  +..+++|+.|++++|.+++. +  +.. +++|+.|++++|+++
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~-~--l~~-l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKL-D--LNQ-NIQLTFLDCSSNKLT  225 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCC-C--CTT-CTTCSEEECCSSCCS
T ss_pred             ec--cccCCCCCEEECcCCcCCee-c--ccc-CCCCCEEECcCCccc
Confidence            55  78899999999999999853 3  444 899999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=3.2e-21  Score=171.44  Aligned_cols=190  Identities=28%  Similarity=0.395  Sum_probs=142.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.+.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++ + ..+..+++|++|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence            5677777777776642  236677788888888887774433  6677888888888887763 3 35677888888888


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+..+  +..+++|+.|++++|.+++.. . +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.
T Consensus       251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCccccchh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            8888874433  778888888888888887543 3 7778888888888888875443  67788888888888888865


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .|  +..+++|+.|++++|.+++. + .+.. +++|+.|++++|+++
T Consensus       325 ~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~-l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          325 SP--VSSLTKLQRLFFYNNKVSDV-S-SLAN-LTNINWLSAGHNQIS  366 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCC-G-GGTT-CTTCCEEECCSSCCC
T ss_pred             hh--hccCccCCEeECCCCccCCc-h-hhcc-CCCCCEEeCCCCccC
Confidence            44  67888899999999988853 3 4444 889999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=5.6e-22  Score=182.14  Aligned_cols=201  Identities=20%  Similarity=0.164  Sum_probs=138.5

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|++++|.+++..+..|..+++|++|++++|.+.+..+.+|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            46778888888887666667888888888888888887666667888888888888888887444456778888888888


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCC----CCeEecccC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN----LVNLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~----L~~L~l~~n  229 (281)
                      ++|++++..+..++.+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+    ...++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            8888875555567788888888888887764 34666777788888888888887666666554433    335677777


Q ss_pred             cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776          230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      .+....+ .......+..+++.+|.....++...+..++.++...+.
T Consensus       212 ~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~  257 (635)
T 4g8a_A          212 PMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  257 (635)
T ss_dssp             CCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred             cccccCc-ccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence            7764333 333334566777777765544444444446666555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.2e-24  Score=180.89  Aligned_cols=212  Identities=18%  Similarity=0.219  Sum_probs=177.7

Q ss_pred             CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCC--CCCCEEECCCCCCccCCchhccCCCcccEeeccCCccccc
Q 038776           61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNL--SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGE  138 (281)
Q Consensus        61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  138 (281)
                      .|..|.++.+.+  ..++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence            456788877654  34678999998776   3445555  7899999999999866555 56899999999999998765


Q ss_pred             -CCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC-ccccc-CCccccCCCCCCeEEcccC-CCccc-ccc
Q 038776          139 -IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN-NLTGN-IPSSLGNLSSLRGLSLSRN-GFYGS-IPD  213 (281)
Q Consensus       139 -~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~  213 (281)
                       ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence             7778899999999999999998888888999999999999999 67653 5666788999999999999 88754 677


Q ss_pred             cCCCCC-CCCeEecccC--cCc-CCCCccccCCCCCCEEEcccCc-ccccCChhhhhCCCCCcEEEccccc
Q 038776          214 TFGGLK-NLVNLSLVVN--NLS-GTIPPLIFNISSIQTFDVGSNY-IEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       214 ~~~~l~-~L~~L~l~~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+.. +++|+.|++++|.
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~  258 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCT
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCC
Confidence            788889 9999999999  455 4567788889999999999998 77777777776 8999999999994

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.1e-21  Score=161.70  Aligned_cols=172  Identities=26%  Similarity=0.368  Sum_probs=147.7

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      ...+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence            345789999999999988 455 5889999999999999998 4555 8999999999999999984 44 689999999


Q ss_pred             EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776          175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  254 (281)
                      .|++++|.+++ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            99999999985 33 38899999999999999985443  7889999999999999985 444 8899999999999999


Q ss_pred             ccccCChhhhhCCCCCcEEEcccccCC
Q 038776          255 IEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       255 l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++ ++. +.. +++|+.|++++|+++
T Consensus       185 l~~-~~~-l~~-l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          185 ISD-ISP-LAS-LPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCC-CGG-GGG-CTTCCEEECTTSCCC
T ss_pred             cCc-Chh-hcC-CCCCCEEEccCCccC
Confidence            984 443 444 999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.4e-23  Score=182.18  Aligned_cols=207  Identities=15%  Similarity=0.190  Sum_probs=167.2

Q ss_pred             CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCCC---CccCCchhc-------cCCCcccEeeccCCcccc---
Q 038776           75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNS---FTNEIPPQI-------GHLRRLQILYLQINSFDG---  137 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~l~~n~~~~---  137 (281)
                      ++++.|++++|.+.+.    ++..+..+++|++|++++|.   +.+.+|..+       ..+++|++|++++|.+.+   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            6689999999988765    34457789999999999964   445566555       689999999999999986   


Q ss_pred             -cCCccCcCCCCCcEEEcccCCCCCCCchhc----CCC---------CCCCEEeCcCCccc-ccCC---ccccCCCCCCe
Q 038776          138 -EIPASISNCSNLLVVSLALNHLAGKIPSEF----GSL---------SKLQFLSTTANNLT-GNIP---SSLGNLSSLRG  199 (281)
Q Consensus       138 -~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~----~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~  199 (281)
                       .+|..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|.+. +..+   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             467788899999999999999874434333    333         89999999999997 3344   45667899999


Q ss_pred             EEcccCCCcc-----cccccCCCCCCCCeEecccCcCc----CCCCccccCCCCCCEEEcccCccccc----CChhhh-h
Q 038776          200 LSLSRNGFYG-----SIPDTFGGLKNLVNLSLVVNNLS----GTIPPLIFNISSIQTFDVGSNYIEGE----MPLDLG-T  265 (281)
Q Consensus       200 L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~-~  265 (281)
                      |++++|+++.     ..|..+..+++|+.|++++|.++    +.+|..+..+++|++|++++|.+++.    ++..+. .
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999999973     34547888999999999999996    56788889999999999999999865    344432 1


Q ss_pred             CCCCCcEEEcccccCC
Q 038776          266 TLPNLRIFSITGNQFT  281 (281)
Q Consensus       266 ~~~~L~~L~l~~N~l~  281 (281)
                      .+++|+.|++++|+++
T Consensus       272 ~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             SSCCCCEEECCSSCCB
T ss_pred             cCCCeEEEECcCCcCC
Confidence            2799999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=3.4e-21  Score=160.95  Aligned_cols=169  Identities=25%  Similarity=0.361  Sum_probs=138.8

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            5678899999888743 3 47788999999999999884 444 8889999999999998873 44 4888999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ 
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-  192 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  192 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence            9999874 3 4688889999999999998754  567888999999999999886544  7888999999999999884 


Q ss_pred             CCccccCCCCCCEEEcccCcccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      ++ .+..+++|+.|++++|++++
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             Ch-hhccCCCCCEEECcCCcccC
Confidence            44 47888999999999998874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=4.7e-21  Score=175.96  Aligned_cols=205  Identities=22%  Similarity=0.253  Sum_probs=161.9

Q ss_pred             CcEEEEEcCCCCcc--eecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLA--GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~  151 (281)
                      +.++.++++.+.+.  +..+..+..+..|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccc
Confidence            34455555555443  223333445555666666665554 334456677788888887776654333 45778899999


Q ss_pred             EEcccCCCCCCCchhcCCCCCCCEEeCcCCccc-ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCc
Q 038776          152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++.|.+.+..+..+..+++++.|++++|... +..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            999999999888888899999999999999754 4567889999999999999999998889999999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCC-CCCcEEEcccccCC
Q 038776          231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTL-PNLRIFSITGNQFT  281 (281)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~N~l~  281 (281)
                      +++..|..+..+++|++|++++|++++..|..+.. + ++|+.|++++|+|+
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCBC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCCc
Confidence            99888888999999999999999999777776665 5 68999999999985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=3.5e-21  Score=165.65  Aligned_cols=175  Identities=22%  Similarity=0.221  Sum_probs=130.1

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhcc-CCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG-HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      .++.+++++. .+|..+.  +.++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5677777776 4565553  4578899999988866666676 8888888888888888666677888888888888888


Q ss_pred             CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC---CCCCCCCeEecccCcCcCC
Q 038776          158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++....+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+   ..+++|+.|++++|.+++.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8886556667888888888888888886667778888888888888888874433334   4577888888888888754


Q ss_pred             CCccccCCCC--CCEEEcccCccc
Q 038776          235 IPPLIFNISS--IQTFDVGSNYIE  256 (281)
Q Consensus       235 ~~~~l~~~~~--L~~L~l~~n~l~  256 (281)
                      .+..+..++.  ++.|++++|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            4455666655  367788887775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=8.4e-23  Score=175.86  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=159.8

Q ss_pred             CcEEEEEcCCCCcceecC----ccCcCCC-CCCEEECCCCCCccCCchhccCC-----CcccEeeccCCcccccCCcc--
Q 038776           75 QRVTILDLQNLKLAGTLP----PHIGNLS-FLQKLDLRNNSFTNEIPPQIGHL-----RRLQILYLQINSFDGEIPAS--  142 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~--  142 (281)
                      .+++.|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            559999999999986555    5677888 89999999999997777777765     99999999999998655543  


Q ss_pred             --CcCC-CCCcEEEcccCCCCCCCchhc----CC-CCCCCEEeCcCCcccccC----CccccCCC-CCCeEEcccCCCcc
Q 038776          143 --ISNC-SNLLVVSLALNHLAGKIPSEF----GS-LSKLQFLSTTANNLTGNI----PSSLGNLS-SLRGLSLSRNGFYG  209 (281)
Q Consensus       143 --l~~l-~~L~~L~l~~n~~~~~~p~~~----~~-l~~L~~L~l~~n~~~~~~----~~~l~~l~-~L~~L~l~~n~~~~  209 (281)
                        +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..    +..+...+ +|++|++++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3444 899999999999987666543    34 369999999999998533    33445555 99999999999986


Q ss_pred             cccccC----CCC-CCCCeEecccCcCcCC----CCccccC-CCCCCEEEcccCcccccCChh---hhhCCCCCcEEEcc
Q 038776          210 SIPDTF----GGL-KNLVNLSLVVNNLSGT----IPPLIFN-ISSIQTFDVGSNYIEGEMPLD---LGTTLPNLRIFSIT  276 (281)
Q Consensus       210 ~~~~~~----~~l-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~p~~---~~~~~~~L~~L~l~  276 (281)
                      ..+..+    ... ++|+.|++++|.+++.    ++..+.. .++|++|++++|.+++..+..   ++..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            665433    344 5999999999999853    4455555 458999999999998655533   33457899999999


Q ss_pred             ccc
Q 038776          277 GNQ  279 (281)
Q Consensus       277 ~N~  279 (281)
                      +|.
T Consensus       262 ~n~  264 (362)
T 3goz_A          262 YDI  264 (362)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            997

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=9.9e-21  Score=151.68  Aligned_cols=153  Identities=27%  Similarity=0.278  Sum_probs=133.9

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  181 (281)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67889999888 6777554  68999999999999666668899999999999999999877888999999999999999


Q ss_pred             cccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776          182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      .++...+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9985544567889999999999999998888889999999999999999997777778889999999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2e-20  Score=150.86  Aligned_cols=165  Identities=25%  Similarity=0.282  Sum_probs=135.3

Q ss_pred             CCCCCCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc
Q 038776           55 SWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS  134 (281)
Q Consensus        55 ~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  134 (281)
                      .|......|.|.++.|..            +++. .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus        11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            455566789988888854            2233 4455443  789999999999998778889999999999999999


Q ss_pred             ccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccccc
Q 038776          135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT  214 (281)
Q Consensus       135 ~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  214 (281)
                      +....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            98444456789999999999999999666666889999999999999998 77888889999999999999998666677


Q ss_pred             CCCCCCCCeEecccCcCcCCC
Q 038776          215 FGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       215 ~~~l~~L~~L~l~~n~~~~~~  235 (281)
                      +..+++|+.|++++|.+....
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTB
T ss_pred             HhCCCCCCEEEeeCCCccCCc
Confidence            888999999999999887554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2e-20  Score=149.87  Aligned_cols=152  Identities=22%  Similarity=0.258  Sum_probs=134.5

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCC
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH  158 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~  158 (281)
                      .++.+++++. .+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            4566677776 5566554  689999999999997777789999999999999999998889999999999999999999


Q ss_pred             CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          159 LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       159 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      ++...+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            995555557899999999999999998888899999999999999999997777789999999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=2.1e-20  Score=149.81  Aligned_cols=154  Identities=27%  Similarity=0.305  Sum_probs=131.1

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      .++++++.+. .+|..+.  ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            6788888877 4666553  456899999999986544 45889999999999999999766778999999999999999


Q ss_pred             CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776          158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  235 (281)
                      .+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            999777777899999999999999999777888889999999999999999777888999999999999999887543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=3.5e-20  Score=149.40  Aligned_cols=156  Identities=25%  Similarity=0.254  Sum_probs=134.3

Q ss_pred             CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            467899988887 6776543  8899999999999977788899999999999999999855556678999999999999


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p  260 (281)
                      |.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9998666666788999999999999998 788888899999999999999996666778889999999999999885543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=150.38  Aligned_cols=156  Identities=22%  Similarity=0.222  Sum_probs=137.9

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            68999999988 6777553  457899999999996544 4578999999999999999977777899999999999999


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p  260 (281)
                      |.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++....+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99997767778999999999999999998888999999999999999999998878999999999999999999986555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=7e-21  Score=149.96  Aligned_cols=152  Identities=16%  Similarity=0.242  Sum_probs=98.0

Q ss_pred             cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776          120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG  199 (281)
Q Consensus       120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  199 (281)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34556666666666665 444 4566666666666666443  2335666667777777777666555666667777777


Q ss_pred             EEcccCCCcccccccCCCCCCCCeEecccCc-CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       200 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      |++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+.. +++|+.|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~-l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED-FPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG-CSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc-CCCCCEEEeeCc
Confidence            7777777766566666777777777777776 44 444 56677777777777777763 44 3444 777777777777


Q ss_pred             cC
Q 038776          279 QF  280 (281)
Q Consensus       279 ~l  280 (281)
                      ++
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.3e-22  Score=174.69  Aligned_cols=205  Identities=19%  Similarity=0.238  Sum_probs=156.1

Q ss_pred             cEEEEEcCCCCcceecCccCcCC-----CCCCEEECCCCCCccCCchhcc----CC-CcccEeeccCCcccccCCccC--
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNL-----SFLQKLDLRNNSFTNEIPPQIG----HL-RRLQILYLQINSFDGEIPASI--  143 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~p~~l--  143 (281)
                      +++.|++++|.+.+..+..+..+     ++|++|++++|.+.+..+..+.    .+ ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            79999999999987666666554     8999999999999877666444    44 899999999999985544333  


Q ss_pred             --cC-CCCCcEEEcccCCCCCCCch----hcCCCC-CCCEEeCcCCcccccCCcc----ccCC-CCCCeEEcccCCCccc
Q 038776          144 --SN-CSNLLVVSLALNHLAGKIPS----EFGSLS-KLQFLSTTANNLTGNIPSS----LGNL-SSLRGLSLSRNGFYGS  210 (281)
Q Consensus       144 --~~-l~~L~~L~l~~n~~~~~~p~----~~~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~  210 (281)
                        .. .++|++|++++|.++...+.    .+...+ +|+.|++++|.+++..+..    +... ++|++|++++|.+++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence              34 36999999999999865443    345555 9999999999998665543    3444 5999999999999853


Q ss_pred             ----ccccCCC-CCCCCeEecccCcCcCCCC----ccccCCCCCCEEEcccCcccccCCh-------hhhhCCCCCcEEE
Q 038776          211 ----IPDTFGG-LKNLVNLSLVVNNLSGTIP----PLIFNISSIQTFDVGSNYIEGEMPL-------DLGTTLPNLRIFS  274 (281)
Q Consensus       211 ----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~p~-------~~~~~~~~L~~L~  274 (281)
                          ++..+.. .++|+.|++++|.+++..+    ..+..+++|++|++++|.+.+..+.       .+. .+++|+.||
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~Ld  290 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVD  290 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEEC
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEe
Confidence                4455544 4699999999999986443    3456778999999999985532222       222 377899999


Q ss_pred             cccccCC
Q 038776          275 ITGNQFT  281 (281)
Q Consensus       275 l~~N~l~  281 (281)
                      +++|++.
T Consensus       291 L~~N~l~  297 (362)
T 3goz_A          291 KNGKEIH  297 (362)
T ss_dssp             TTSCBCC
T ss_pred             cCCCcCC
Confidence            9999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.6e-20  Score=154.71  Aligned_cols=171  Identities=24%  Similarity=0.327  Sum_probs=135.7

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+  +..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence            345678899999998887 344 47888899999999998884 444 7888999999999998874  33488889999


Q ss_pred             EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776          175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  254 (281)
                      .|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999999988743  5677888999999999988754  567788899999999998885433  7888899999999998


Q ss_pred             ccccCChhhhhCCCCCcEEEcccccC
Q 038776          255 IEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       255 l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++ .++. +.. +++|+.|++++|++
T Consensus       190 i~-~l~~-l~~-l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          190 IS-DLRA-LAG-LKNLDVLELFSQEC  212 (291)
T ss_dssp             CC-BCGG-GTT-CTTCSEEEEEEEEE
T ss_pred             CC-CChh-hcc-CCCCCEEECcCCcc
Confidence            88 4553 444 88999999998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.6e-20  Score=161.61  Aligned_cols=175  Identities=21%  Similarity=0.243  Sum_probs=98.7

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      +.++++++.+. .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45566666655 4454332  3456666666666644444444 566666666666666644445566666666666666


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccc---cCCCCCCEEEcccCcccc
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI---FNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~l~~  257 (281)
                      |++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+   ..+++|+.|++++|.++ 
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence            66664444455666666666666666665555566666666666666666663222222   34566666666666666 


Q ss_pred             cCChhhhhCCCC--CcEEEcccccC
Q 038776          258 EMPLDLGTTLPN--LRIFSITGNQF  280 (281)
Q Consensus       258 ~~p~~~~~~~~~--L~~L~l~~N~l  280 (281)
                      .+|...+..++.  ++.|++++|++
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCc
Confidence            344333333554  35566666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=1.8e-20  Score=170.96  Aligned_cols=169  Identities=25%  Similarity=0.369  Sum_probs=144.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.|+++++.+.. ++ .+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+. .+| .+..+++|++|++
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEe
Confidence            668889999998874 34 58889999999999999984 444 889999999999999998 344 6889999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.+++ 
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-  189 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  189 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence            9999984 3 4588999999999999999854  678889999999999999986666  8889999999999999985 


Q ss_pred             CCccccCCCCCCEEEcccCcccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      + ..+..+++|+.|++++|.+.+
T Consensus       190 l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          190 L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             C-hHHccCCCCCEEEccCCcCcC
Confidence            4 468889999999999999884

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=1.3e-19  Score=165.53  Aligned_cols=183  Identities=25%  Similarity=0.311  Sum_probs=107.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+. .+|.   .+++|++|++++|.+. .+|.   .+++|+.|++++|.++ .+|..   +++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence            44555555555554 2333   3445555555555554 2222   2334444444444444 23322   245555555


Q ss_pred             ccCCCCCCCchh---cC--------------CCCCCCEEeCcCCcccccCCcccc-----------------CCCCCCeE
Q 038776          155 ALNHLAGKIPSE---FG--------------SLSKLQFLSTTANNLTGNIPSSLG-----------------NLSSLRGL  200 (281)
Q Consensus       155 ~~n~~~~~~p~~---~~--------------~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L  200 (281)
                      ++|.+++ +|..   +.              .+++|+.|++++|.+++ +|..+.                 .+++|++|
T Consensus       149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L  226 (622)
T 3g06_A          149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL  226 (622)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence            5555542 2211   11              12555666666665552 222111                 12567777


Q ss_pred             EcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       201 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.. +++|+.|++++|++
T Consensus       227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~-l~~L~~L~L~~N~l  296 (622)
T 3g06_A          227 IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPL  296 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG-SCTTCEEECCSCCC
T ss_pred             EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh-ccccCEEEecCCCC
Confidence            777777763 44   34578888888888887 4555   5678999999999998 88888776 99999999999987


Q ss_pred             C
Q 038776          281 T  281 (281)
Q Consensus       281 ~  281 (281)
                      +
T Consensus       297 ~  297 (622)
T 3g06_A          297 S  297 (622)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=1.4e-20  Score=148.20  Aligned_cols=153  Identities=18%  Similarity=0.203  Sum_probs=102.3

Q ss_pred             cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCE
Q 038776           96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF  175 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  175 (281)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..++.+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34556677777777666 445 4666777777777777553  2335666777777777777776556666777777777


Q ss_pred             EeCcCCcccccCCccccCCCCCCeEEcccCC-CcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776          176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  254 (281)
                      |++++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            7777777766566667777777777777776 44 444 46677777778887777764 33 66677778888888887


Q ss_pred             cc
Q 038776          255 IE  256 (281)
Q Consensus       255 l~  256 (281)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            65

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=7.9e-21  Score=168.16  Aligned_cols=183  Identities=20%  Similarity=0.235  Sum_probs=91.5

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCC--------------------------------
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLR--------------------------------  123 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--------------------------------  123 (281)
                      +++.++++++.+ +.+|+.++.+++|++|++++|.+.+.+|..+++++                                
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~   90 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP   90 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence            344555555555 35555555555555555555555545555444444                                


Q ss_pred             -cccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEc
Q 038776          124 -RLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL  202 (281)
Q Consensus       124 -~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  202 (281)
                       +|++|++++|.+++ +|..   .++|++|++++|.+.+ +|..   .++|++|++++|.+++ +| .++.+++|++|++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence             44555555555442 3322   2455555555555542 2211   1466677777766663 45 4666677777777


Q ss_pred             ccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       203 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|.+++ +|..+   .+|+.|++++|.+++ +| .++.+++|++|++++|.+++ +|..    .++|+.|++++|.+
T Consensus       161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNIL  227 (454)
T ss_dssp             CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCC
T ss_pred             CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcC
Confidence            7776663 44332   466777777777664 44 46667777777777777763 4431    34677777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=8.3e-20  Score=166.87  Aligned_cols=178  Identities=28%  Similarity=0.346  Sum_probs=87.9

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      +++.|++++|.+. .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence            4455555555544 2333   3345555555555554 3333   4455555555555555 3333   34556666666


Q ss_pred             cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcc---ccCC--------------CCCCeEEcccCCCcccccccCCC-
Q 038776          156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS---LGNL--------------SSLRGLSLSRNGFYGSIPDTFGG-  217 (281)
Q Consensus       156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---l~~l--------------~~L~~L~l~~n~~~~~~~~~~~~-  217 (281)
                      +|+++ .+|..   +++|++|++++|.+++ +|..   +..+              ++|+.|++++|.+++ +|..+.. 
T Consensus       130 ~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L  203 (622)
T 3g06_A          130 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL  203 (622)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             CCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence            66655 34432   3667777777777663 2322   2111              556666666666553 2221110 


Q ss_pred             ----------------CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          218 ----------------LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       218 ----------------l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                                      +++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|++
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L  273 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQL  273 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCC
Confidence                            1334444444444442 23   23345555555555555 3443    245566666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1.6e-20  Score=160.97  Aligned_cols=197  Identities=18%  Similarity=0.123  Sum_probs=134.4

Q ss_pred             ccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccE-eecc
Q 038776           63 CEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQI-LYLQ  131 (281)
Q Consensus        63 c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~  131 (281)
                      |.+..+.|...         ..+++.|++++|.+....+..|.++++|++|++++|.+.+.+| .+|.++++++. +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            55556666431         2568899999999996555679999999999999999875555 46888888775 6667


Q ss_pred             CCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC-CcccccCCccccCC-CCCCeEEcccCCCcc
Q 038776          132 INSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA-NNLTGNIPSSLGNL-SSLRGLSLSRNGFYG  209 (281)
Q Consensus       132 ~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~  209 (281)
                      .|+++...|..+..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+ ..+++|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            7889866678889999999999999999855554555556666676654 34443333344444 35667777777776 


Q ss_pred             cccccCCCCCCCCeEeccc-CcCcCCCCccccCCCCCCEEEcccCcccccCCh
Q 038776          210 SIPDTFGGLKNLVNLSLVV-NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPL  261 (281)
Q Consensus       210 ~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~  261 (281)
                      .+|.......+|+++++.+ |.++...+..+..+++|+.|++++|+++ .+|.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~  219 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  219 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence            3444433445667777654 4444322345566677777777777766 4554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=6.6e-20  Score=167.23  Aligned_cols=169  Identities=24%  Similarity=0.353  Sum_probs=91.0

Q ss_pred             CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776           97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  176 (281)
                      .+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+ ++. +..+++|++|++++|.+.+ +| .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            4455555666665554 233 35555666666666665553 222 5555666666666665552 22 45555666666


Q ss_pred             eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      ++++|.+.+ + +.+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+.
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            666665553 1 3355555666666666655533  345555566666666666554333  555556666666666555


Q ss_pred             ccCChhhhhCCCCCcEEEcccccC
Q 038776          257 GEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      + +| .+.. +++|+.|+|++|++
T Consensus       189 ~-l~-~l~~-l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          189 D-LR-ALAG-LKNLDVLELFSQEC  209 (605)
T ss_dssp             B-CG-GGTT-CTTCSEEECCSEEE
T ss_pred             C-Ch-HHcc-CCCCCEEEccCCcC
Confidence            3 22 2333 55666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=5.7e-20  Score=157.45  Aligned_cols=198  Identities=19%  Similarity=0.153  Sum_probs=157.7

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcE-EEccc
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLV-VSLAL  156 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~-L~l~~  156 (281)
                      +++-++++++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+.+.+|. .|.+++++++ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4667777787 6676663  6899999999999954556899999999999999998766654 6788988775 56677


Q ss_pred             CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc-CCCcccccccCCCC-CCCCeEecccCcCcCC
Q 038776          157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR-NGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT  234 (281)
Q Consensus       157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~  234 (281)
                      |++....|..+..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence            999877778899999999999999999865555566667788898876 45554444556665 46889999999998 4


Q ss_pred             CCccccCCCCCCEEEccc-CcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTFDVGS-NYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~-n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|..+....+|++|++.+ |.++ .+|...+..+++|+.||+++|+|+
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            666666677899999986 5555 888887777999999999999885

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.82  E-value=1.2e-21  Score=182.58  Aligned_cols=200  Identities=21%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCC-CCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCE-----EE
Q 038776           32 ETDRAALLEFKSKITNDALGVLGSWND-SIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQK-----LD  105 (281)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~-----L~  105 (281)
                      +.++.++.++..+.....+.....|.. ......|.+..+..  ++++.+++.++.+.. .+..+.....|+.     ++
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~  207 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDD  207 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCcc
Confidence            445677777777664444444445643 23345666655443  556666666555543 1222211111111     11


Q ss_pred             CCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc
Q 038776          106 LRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG  185 (281)
Q Consensus       106 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  185 (281)
                      ++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.++ 
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            2222222 23444555555555555555555 45555555555555555555555 55555555555555555555555 


Q ss_pred             cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccc
Q 038776          186 NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI  239 (281)
Q Consensus       186 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  239 (281)
                      .+|..++.+++|++|++++|.++ .+|..++.+++|+.|+|++|.+++.+|..+
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            44555555555555555555554 445555555555555555555555444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=2e-20  Score=153.96  Aligned_cols=168  Identities=20%  Similarity=0.210  Sum_probs=134.7

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      +++.++++++.+.+..  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence            3455667777777443  4677889999999999887 555 68889999999999999884 444 8889999999999


Q ss_pred             cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776          156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  235 (281)
                      +|++++ +|.. .. ++|+.|++++|.+++.  +.+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++. 
T Consensus        94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence            999884 4433 33 8899999999998853  4588899999999999998854 4 577889999999999999864 


Q ss_pred             CccccCCCCCCEEEcccCccccc
Q 038776          236 PPLIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       236 ~~~l~~~~~L~~L~l~~n~l~~~  258 (281)
                       ..+..+++|+.|++++|.+++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             6778889999999999988743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=5.4e-22  Score=175.89  Aligned_cols=181  Identities=17%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             CCCEEECCCCCCccC----CchhccCCCcccEeeccCCcccccC-----CccCcCCCCCcEEEcccCCCCCC----Cchh
Q 038776          100 FLQKLDLRNNSFTNE----IPPQIGHLRRLQILYLQINSFDGEI-----PASISNCSNLLVVSLALNHLAGK----IPSE  166 (281)
Q Consensus       100 ~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~-----p~~l~~l~~L~~L~l~~n~~~~~----~p~~  166 (281)
                      +|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            444444444444421    2344445555555555555554221     11122455666666666665532    3444


Q ss_pred             cCCCCCCCEEeCcCCcccccCCcccc-----CCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCCCCc
Q 038776          167 FGSLSKLQFLSTTANNLTGNIPSSLG-----NLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       167 ~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~  237 (281)
                      +..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            55566666666666666533222222     124677777777766643    344555667888888888877654333


Q ss_pred             cccC-----CCCCCEEEcccCcccc----cCChhhhhCCCCCcEEEcccccCC
Q 038776          238 LIFN-----ISSIQTFDVGSNYIEG----EMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       238 ~l~~-----~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .+..     .++|++|++++|.+++    .+|..+.. +++|++|++++|+++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCC
Confidence            3322     5678888888888875    56666665 788888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1.2e-18  Score=154.13  Aligned_cols=119  Identities=26%  Similarity=0.361  Sum_probs=53.1

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      +++.|++++|.+.+ +| .++.+++|++|++++|.+.+ +|..   ..+|++|++++|.+++ +| .++++++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            34444444444443 33 24445555555555554442 3322   1244444444444442 33 34455555555555


Q ss_pred             cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776          156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      +|.+.+ +|..   .++|+.|++++|.+. .+| .+..+++|++|++++|.++
T Consensus       204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            554442 2221   124444444444444 333 2444555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=3e-19  Score=161.44  Aligned_cols=166  Identities=24%  Similarity=0.314  Sum_probs=143.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+. .+|   ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            67999999999998 666   457899999999999995 777 655  99999999999995 776   6899999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCC-------CeEecc
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL-------VNLSLV  227 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------~~L~l~  227 (281)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|+++
T Consensus       148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred             CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence            9999985 665   67899999999999985 676 55  89999999999998 6776 554  77       999999


Q ss_pred             cCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh
Q 038776          228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT  265 (281)
Q Consensus       228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  265 (281)
                      +|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus       216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            99999 68888888999999999999999988887765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=2.2e-21  Score=172.03  Aligned_cols=204  Identities=22%  Similarity=0.217  Sum_probs=94.7

Q ss_pred             cEEEEEcCCCCcce----ecCccCcCCCCCCEEECCCCCCccCCchhcc-----CCCcccEeeccCCccccc----CCcc
Q 038776           76 RVTILDLQNLKLAG----TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG-----HLRRLQILYLQINSFDGE----IPAS  142 (281)
Q Consensus        76 ~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~p~~  142 (281)
                      +++.|++++|.+..    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            45666666665552    3344555566666666666655432222111     133455555555544431    1222


Q ss_pred             CcCCCCCcEEEcccC-----------------------------CCCCC----CchhcCCCCCCCEEeCcCCcccccC--
Q 038776          143 ISNCSNLLVVSLALN-----------------------------HLAGK----IPSEFGSLSKLQFLSTTANNLTGNI--  187 (281)
Q Consensus       143 l~~l~~L~~L~l~~n-----------------------------~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--  187 (281)
                      +..+++|++|++++|                             .++..    ++..+..+++|++|++++|.+.+..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            333444444444444                             44321    2333344455555555555443221  


Q ss_pred             ---CccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCCCCcccc-----CCCCCCEEEcccCcc
Q 038776          188 ---PSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-----NISSIQTFDVGSNYI  255 (281)
Q Consensus       188 ---~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l  255 (281)
                         +.....+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               11112344555555555555432    334444455555555555555432222221     124566666666665


Q ss_pred             ccc----CChhhhhCCCCCcEEEcccccC
Q 038776          256 EGE----MPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       256 ~~~----~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++.    ++..+.. +++|+.|++++|++
T Consensus       326 ~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          326 TAACCSHFSSVLAQ-NRFLLELQISNNRL  353 (461)
T ss_dssp             BGGGHHHHHHHHHH-CSSCCEEECCSSBC
T ss_pred             chHHHHHHHHHHhh-CCCccEEEccCCcc
Confidence            543    2233333 56777777777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=4.3e-22  Score=180.51  Aligned_cols=123  Identities=21%  Similarity=0.271  Sum_probs=102.3

Q ss_pred             CCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776          148 NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  227 (281)
                      .|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57889999998884 666 888999999999999998 778888999999999999999985 66 78889999999999


Q ss_pred             cCcCcCCC-CccccCCCCCCEEEcccCcccccCCh--hhhhCCCCCcEEEc
Q 038776          228 VNNLSGTI-PPLIFNISSIQTFDVGSNYIEGEMPL--DLGTTLPNLRIFSI  275 (281)
Q Consensus       228 ~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~l  275 (281)
                      +|.+++.. |..++.+++|+.|++++|.+++..|.  .+...+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998765 88889999999999999998865442  23334888998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=5.7e-19  Score=145.26  Aligned_cols=147  Identities=22%  Similarity=0.274  Sum_probs=125.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++ .+|... . ++|++|++
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEEC
T ss_pred             CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEc
Confidence            67889999999887 445 68889999999999999984 454 899999999999999998 455433 3 89999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+++ + +.+..+++|+.|++++|++++. + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       114 ~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999985 3 3589999999999999999854 3 688899999999999999865  6788899999999999999854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=8.7e-20  Score=170.08  Aligned_cols=181  Identities=24%  Similarity=0.270  Sum_probs=124.3

Q ss_pred             ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCC
Q 038776           90 TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGS  169 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~  169 (281)
                      ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            44667889999999999999998 78887889999999999999999 89999999999999999999999 88999999


Q ss_pred             CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCC-CCCeEecccCcCcCCCCccccCCCCCCEE
Q 038776          170 LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK-NLVNLSLVVNNLSGTIPPLIFNISSIQTF  248 (281)
Q Consensus       170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  248 (281)
                      +++|++|++++|.++ .+|..++.+++|++|++++|.+++.+|..+..+. ....+++++|.+++.+|..      |+.|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l  364 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI  364 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence            999999999999997 7888899999999999999999988887775432 2234778999998877754      4556


Q ss_pred             EcccC----cccccCChhhh---hCCCCCcEEEcccccC
Q 038776          249 DVGSN----YIEGEMPLDLG---TTLPNLRIFSITGNQF  280 (281)
Q Consensus       249 ~l~~n----~l~~~~p~~~~---~~~~~L~~L~l~~N~l  280 (281)
                      +++.|    ...|.++....   ..+.+++...+++|-+
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             -------------------------------------CC
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            66655    22223332211   1244555556666644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=2.5e-21  Score=175.53  Aligned_cols=178  Identities=19%  Similarity=0.193  Sum_probs=148.7

Q ss_pred             cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-------------ccccCCccCcCCCCCcEEE-cccCCCCC
Q 038776           96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-------------FDGEIPASISNCSNLLVVS-LALNHLAG  161 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~p~~l~~l~~L~~L~-l~~n~~~~  161 (281)
                      ...++|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56889999999999997 889999999999999997764             4556677778888888888 5555432 


Q ss_pred             CCch------hcCC--CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          162 KIPS------EFGS--LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       162 ~~p~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      .++.      .+..  ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            1111      0111  1358999999999985 676 899999999999999999 889999999999999999999996


Q ss_pred             CCCccccCCCCCCEEEcccCcccccC-ChhhhhCCCCCcEEEcccccCC
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEM-PLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                       +| .++.+++|++|++++|.+++.. |..+.. +++|+.|++++|+++
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLC  546 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGG
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCC
Confidence             67 8999999999999999999765 888877 999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=9.1e-18  Score=131.51  Aligned_cols=132  Identities=23%  Similarity=0.292  Sum_probs=114.9

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      +.++++++.+. .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999987 77775543  899999999999854443 388999999999999999988888899999999999999


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  236 (281)
                      |++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99997777778899999999999999998888899999999999999999986544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.2e-17  Score=130.80  Aligned_cols=132  Identities=25%  Similarity=0.305  Sum_probs=116.0

Q ss_pred             EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCch-hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776           78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP-QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL  156 (281)
Q Consensus        78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  156 (281)
                      +.++++++++. .+|..+..  ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            46788888885 66766543  899999999999865554 489999999999999999988889999999999999999


Q ss_pred             CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776          157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  212 (281)
                      |++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998777789999999999999999998889999999999999999999986543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=3.7e-18  Score=130.77  Aligned_cols=131  Identities=19%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             CCCCEEECCCCCCc-cCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEe
Q 038776           99 SFLQKLDLRNNSFT-NEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS  177 (281)
Q Consensus        99 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  177 (281)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666665 45555556666666666666666532  4555566666666666665544444444455555555


Q ss_pred             CcCCcccccC-CccccCCCCCCeEEcccCCCccccc---ccCCCCCCCCeEecccCcC
Q 038776          178 TTANNLTGNI-PSSLGNLSSLRGLSLSRNGFYGSIP---DTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       178 l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~  231 (281)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555554221 1334444444444444444442222   1333444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=6.5e-18  Score=129.41  Aligned_cols=137  Identities=21%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             CCcccEeeccCCccc-ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeE
Q 038776          122 LRRLQILYLQINSFD-GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGL  200 (281)
Q Consensus       122 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  200 (281)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467888888888876 66777777888888888888887744  667788888888888888876666666668888888


Q ss_pred             EcccCCCcccc-cccCCCCCCCCeEecccCcCcCCCC---ccccCCCCCCEEEcccCcccccCCh
Q 038776          201 SLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIP---PLIFNISSIQTFDVGSNYIEGEMPL  261 (281)
Q Consensus       201 ~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~p~  261 (281)
                      ++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+. ++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            88888887432 2567778888888888888875443   36777888888888888776 4553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=7.7e-18  Score=126.39  Aligned_cols=129  Identities=22%  Similarity=0.235  Sum_probs=75.9

Q ss_pred             CCCcEEEcccCCCC-CCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEe
Q 038776          147 SNLLVVSLALNHLA-GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS  225 (281)
Q Consensus       147 ~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  225 (281)
                      ++|++|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34445555555444 34444445555555555555555433  4455566666666666666655565555566777777


Q ss_pred             cccCcCcCC-CCccccCCCCCCEEEcccCcccccCC--hhhhhCCCCCcEEEccc
Q 038776          226 LVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMP--LDLGTTLPNLRIFSITG  277 (281)
Q Consensus       226 l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~l~~  277 (281)
                      +++|.+++. .+..+..+++|++|++++|.+++..+  ...+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777776642 23566777777777777777774433  12333377888877763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=4e-17  Score=127.90  Aligned_cols=128  Identities=23%  Similarity=0.326  Sum_probs=109.2

Q ss_pred             cEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccC
Q 038776          126 QILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRN  205 (281)
Q Consensus       126 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  205 (281)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888988888 7776553  68999999999998 77788899999999999999998776678888999999999999


Q ss_pred             CCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776          206 GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       206 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      .+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9987777788899999999999999986555678888999999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=8.9e-18  Score=126.05  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             CcccEeeccCCccc-ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEE
Q 038776          123 RRLQILYLQINSFD-GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS  201 (281)
Q Consensus       123 ~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  201 (281)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444444 34444444445555555555544422  3344455555555555555443444444455555555


Q ss_pred             cccCCCccc-ccccCCCCCCCCeEecccCcCcCCCC---ccccCCCCCCEEEcc
Q 038776          202 LSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIP---PLIFNISSIQTFDVG  251 (281)
Q Consensus       202 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~  251 (281)
                      +++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555532 22455555666666666666654333   345556666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=1.8e-16  Score=122.33  Aligned_cols=133  Identities=21%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             ccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 038776          125 LQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR  204 (281)
Q Consensus       125 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  204 (281)
                      .+.++++++.++ .+|..+  .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            567888888887 667544  37899999999999866666678999999999999999866556678899999999999


Q ss_pred             CCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776          205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP  260 (281)
Q Consensus       205 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p  260 (281)
                      |.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99997777778889999999999999986555567888999999999999887655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=124.39  Aligned_cols=128  Identities=27%  Similarity=0.356  Sum_probs=115.5

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  181 (281)
                      +.++++++.+. .+|..+  .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            68999999988 677654  368999999999998 88889999999999999999999777778999999999999999


Q ss_pred             cccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      .+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9997777789999999999999999996666678899999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=2.3e-16  Score=121.83  Aligned_cols=133  Identities=21%  Similarity=0.254  Sum_probs=113.5

Q ss_pred             CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      .+.++++++.+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            478999999887 566544  47899999999999965556678999999999999999966666689999999999999


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  236 (281)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99996666678899999999999999996666667889999999999999987554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=2.5e-16  Score=121.47  Aligned_cols=132  Identities=17%  Similarity=0.218  Sum_probs=85.7

Q ss_pred             ccCCCcccEeeccCCcccccCCccCcCC-CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCC
Q 038776          119 IGHLRRLQILYLQINSFDGEIPASISNC-SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL  197 (281)
Q Consensus       119 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  197 (281)
                      +..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            456677777888877777 4443 3333 3777777777777643  456677777777777777764332334667777


Q ss_pred             CeEEcccCCCcccccc--cCCCCCCCCeEecccCcCcCCCCcc----ccCCCCCCEEEcccCccc
Q 038776          198 RGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPL----IFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       198 ~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~n~l~  256 (281)
                      ++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777775 4444  5666677777777777776 34443    666677777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=1.3e-18  Score=158.78  Aligned_cols=205  Identities=16%  Similarity=0.139  Sum_probs=121.7

Q ss_pred             cEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCc-cCCchhccCCCcccEeeccC-----------Cccccc-CCc
Q 038776           76 RVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFT-NEIPPQIGHLRRLQILYLQI-----------NSFDGE-IPA  141 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~-----------n~~~~~-~p~  141 (281)
                      +++.|++++|.+.+... ..+..+++|++|+++ +.+. +.++..+..+++|++|++++           +.+++. ++.
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            45555555554332211 123445555555555 2222 12222233455666666662           333321 111


Q ss_pred             cCcCCCCCcEEEcccCCCCCCCchhcCC-CCCCCEEeCc----CCccccc-----CCccccCCCCCCeEEcccCC--Ccc
Q 038776          142 SISNCSNLLVVSLALNHLAGKIPSEFGS-LSKLQFLSTT----ANNLTGN-----IPSSLGNLSSLRGLSLSRNG--FYG  209 (281)
Q Consensus       142 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--~~~  209 (281)
                      ....+++|++|+++.+.+++..+..++. +++|+.|+++    .|.+++.     ++..+..+++|++|+++.|.  +++
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            2234667777777666666555555544 7777777775    4455432     22234557788888886543  444


Q ss_pred             cccccCC-CCCCCCeEecccCcCcC-CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          210 SIPDTFG-GLKNLVNLSLVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       210 ~~~~~~~-~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ..+..+. .+++|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+...+++|+.|++++|+++
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4333333 47889999999998875 345566788999999999999876655555555899999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.64  E-value=5.6e-19  Score=139.13  Aligned_cols=129  Identities=26%  Similarity=0.303  Sum_probs=63.1

Q ss_pred             CCCCEEECCCCCCccCCch------hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCC
Q 038776           99 SFLQKLDLRNNSFTNEIPP------QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSK  172 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  172 (281)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444433333      55566666666666666552 44 5555556666666665555 44444444455


Q ss_pred             CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCc
Q 038776          173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  232 (281)
                      |+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            5555555555543 22 34444455555555554442111 23444444444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=3.3e-16  Score=120.87  Aligned_cols=132  Identities=19%  Similarity=0.135  Sum_probs=74.0

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCC-CcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHL-RRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL  173 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  173 (281)
                      +....+|++|++++|.+. .+|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            444556666666666665 3333 3333 3666666666666532  455566666666666666653322333566666


Q ss_pred             CEEeCcCCcccccCCc--cccCCCCCCeEEcccCCCccccccc----CCCCCCCCeEecccCcCc
Q 038776          174 QFLSTTANNLTGNIPS--SLGNLSSLRGLSLSRNGFYGSIPDT----FGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       174 ~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~  232 (281)
                      +.|++++|.+. .+|.  .+..+++|++|++++|.+. .+|..    +..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666666664 3343  4555666666666666665 33432    555666666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=3.4e-17  Score=149.45  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=16.5

Q ss_pred             CCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776          242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       242 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      +++|++|++..|.+++..+..+...+++|+.|+++
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            44455555544444444444444334555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=4.9e-15  Score=125.64  Aligned_cols=174  Identities=14%  Similarity=0.130  Sum_probs=129.6

Q ss_pred             CCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCC-------C----------
Q 038776           98 LSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL-------A----------  160 (281)
Q Consensus        98 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~-------~----------  160 (281)
                      +++|+.++++. .+....+.+|.++++|+.+++..|.+....+..|..+.++..+....+..       .          
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            88899999988 77655566788899999999988887755566677777676666544211       0          


Q ss_pred             ---------CCCchh---------------------------c-CCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776          161 ---------GKIPSE---------------------------F-GSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS  203 (281)
Q Consensus       161 ---------~~~p~~---------------------------~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  203 (281)
                               +.++..                           + ..+++|+.+++.+|+++...+..|..+++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                     000000                           0 027889999999988885555678889999999999


Q ss_pred             cCCCcccccccCCCCCCCC-eEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEc
Q 038776          204 RNGFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSI  275 (281)
Q Consensus       204 ~n~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l  275 (281)
                      .| +....+..|.++++|+ .+++.+ .++...+..|.++++|+.+++++|.++ .++...+.++++|+.++.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            87 6655667788999999 999988 666556688889999999999999988 667767777999998874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=1.1e-18  Score=137.42  Aligned_cols=155  Identities=17%  Similarity=0.218  Sum_probs=103.1

Q ss_pred             ccCCCcccEeeccCCcccccCCc------cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcccc
Q 038776          119 IGHLRRLQILYLQINSFDGEIPA------SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG  192 (281)
Q Consensus       119 ~~~l~~L~~L~l~~n~~~~~~p~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~  192 (281)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34455666666666666666555      66777777777777777774 55 6677777777777777776 5566666


Q ss_pred             CCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC-ccccCCCCCCEEEcccCcccccCChh---------
Q 038776          193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP-PLIFNISSIQTFDVGSNYIEGEMPLD---------  262 (281)
Q Consensus       193 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~---------  262 (281)
                      .+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|..         
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            66777777777777764 44 46666777777777777763221 35667777777777777776554431         


Q ss_pred             hhhCCCCCcEEEcccccC
Q 038776          263 LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       263 ~~~~~~~L~~L~l~~N~l  280 (281)
                      +...+++|+.||  +|++
T Consensus       169 ~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          169 VVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHHHCSSCSEEC--CGGG
T ss_pred             HHHhCCCcEEEC--Cccc
Confidence            223377777765  5543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=2.3e-14  Score=109.83  Aligned_cols=109  Identities=23%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             CCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776          148 NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  227 (281)
                      ..+++++++|.++ .+|..+  .++++.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999998 577655  3889999999999997778889999999999999999997777778899999999999


Q ss_pred             cCcCcCCCCccccCCCCCCEEEcccCcccccC
Q 038776          228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEGEM  259 (281)
Q Consensus       228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  259 (281)
                      +|++++..+..+..+++|++|++++|++....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999766667889999999999999987443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=3.8e-14  Score=109.00  Aligned_cols=106  Identities=22%  Similarity=0.202  Sum_probs=91.0

Q ss_pred             CcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776          149 LLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       149 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  228 (281)
                      -+.+++++|.+. .+|..+.  ++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999987 7777654  8899999999999977788899999999999999999966666678899999999999


Q ss_pred             CcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776          229 NNLSGTIPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      |++++..+..+..+++|++|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99996555568889999999999999873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=5e-17  Score=148.32  Aligned_cols=204  Identities=15%  Similarity=0.121  Sum_probs=129.8

Q ss_pred             CcEEEEEcCCCCcceec-CccCcCCCCCCEEECCCCCCccC-CchhccCCCcccEeeccC---------CcccccCCccC
Q 038776           75 QRVTILDLQNLKLAGTL-PPHIGNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQI---------NSFDGEIPASI  143 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~p~~l  143 (281)
                      ++++.|+++++.+.+.. +..+..+++|++|++++| +... ++.....+++|++|++.+         +.+++.....+
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            56777777777755332 222456677788887776 3321 222223467788887733         33332211122


Q ss_pred             -cCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEeCc--C----Cccccc-----CCccccCCCCCCeEEcccCCCccc
Q 038776          144 -SNCSNLLVVSLALNHLAGKIPSEFG-SLSKLQFLSTT--A----NNLTGN-----IPSSLGNLSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       144 -~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~  210 (281)
                       ..+++|++|.+..+.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|++|++++ .+++.
T Consensus       368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence             2367888888777777755444444 57888888888  3    344411     112245677888888876 55544


Q ss_pred             ccccCCC-CCCCCeEecccCcCcCCCCccc-cCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          211 IPDTFGG-LKNLVNLSLVVNNLSGTIPPLI-FNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       211 ~~~~~~~-l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+...+++|+.|++++|++
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4444443 7889999999998865444443 56788999999999887655555555588999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=9.9e-14  Score=106.25  Aligned_cols=105  Identities=26%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776          101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  180 (281)
                      .+.+++++|.+. .+|..+  .++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            466777777776 455544  25677777777777755566666777777777777777644444456666666666666


Q ss_pred             CcccccCCccccCCCCCCeEEcccCCCc
Q 038776          181 NNLTGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      |++++..+..+..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6666444445666666666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1.3e-13  Score=105.95  Aligned_cols=107  Identities=24%  Similarity=0.270  Sum_probs=94.3

Q ss_pred             ccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 038776          125 LQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR  204 (281)
Q Consensus       125 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  204 (281)
                      -+.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999997 7888764  8999999999999987788899999999999999999965555678999999999999


Q ss_pred             CCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       205 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      |.+++..+..+..+++|+.|++++|.+...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999966666699999999999999999843

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=4.8e-14  Score=119.52  Aligned_cols=197  Identities=15%  Similarity=0.160  Sum_probs=138.3

Q ss_pred             CcEEEEEcCCCCcc--eecCccCcCCCCCCEEECCCCCCccCCchhccC--------CCcccEeeccCCcccccCCccCc
Q 038776           75 QRVTILDLQNLKLA--GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH--------LRRLQILYLQINSFDGEIPASIS  144 (281)
Q Consensus        75 ~~l~~l~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~p~~l~  144 (281)
                      ++++.|++++|.+.  ......+   +.++.+.+..+.+   .+.+|.+        +++|+.+++.. .++..-+..|.
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             ccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            45666666666555  2211112   1133334443322   2346667        99999999998 77755566799


Q ss_pred             CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcc----cccCCccc-----------------------------
Q 038776          145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL----TGNIPSSL-----------------------------  191 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~----~~~~~~~l-----------------------------  191 (281)
                      ++++|+.++++.|.+....+..|..+.++..+....+..    .......+                             
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP  201 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence            999999999999988756666677777777776554211    00000000                             


Q ss_pred             ---------------------cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC-EEE
Q 038776          192 ---------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ-TFD  249 (281)
Q Consensus       192 ---------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~-~L~  249 (281)
                                           ..+++|+.+++++|+++...+..|.++++|+.+++.+| ++...+..|.++++|+ .++
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence                                 02689999999999998666667999999999999998 7656667889999999 999


Q ss_pred             cccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       250 l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +.+ .++ .++...+.++++|+.+++++|+++
T Consensus       281 l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          281 LPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             ECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred             Ecc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence            998 666 666666677999999999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=8.7e-16  Score=140.11  Aligned_cols=201  Identities=14%  Similarity=0.147  Sum_probs=116.0

Q ss_pred             CcEEEEEcCCCCcceecCccCc-CCCCCCEEECCCC-CCccC-CchhccCCCcccEeeccCCcccccCCc----cCcCCC
Q 038776           75 QRVTILDLQNLKLAGTLPPHIG-NLSFLQKLDLRNN-SFTNE-IPPQIGHLRRLQILYLQINSFDGEIPA----SISNCS  147 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~----~l~~l~  147 (281)
                      ++++.|+++++.+.+..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+.    ....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5677777777776654444443 4677777777777 33322 334444677788888877776543322    223566


Q ss_pred             CCcEEEcccCC--CCC-CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCC-----------------
Q 038776          148 NLLVVSLALNH--LAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF-----------------  207 (281)
Q Consensus       148 ~L~~L~l~~n~--~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~-----------------  207 (281)
                      +|++|++++|.  +.. .++.....+++|+.|++++|...+.++..+..+++|++|++..+..                 
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            77888877775  211 1111223467777887777732223555555666677776544321                 


Q ss_pred             ---------c----ccccccCCCCCCCCeEecccCcCcCC-CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEE
Q 038776          208 ---------Y----GSIPDTFGGLKNLVNLSLVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF  273 (281)
Q Consensus       208 ---------~----~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  273 (281)
                               .    +.++..+..+++|+.|++++|.+++. ++..+..+++|++|++++| +.+.....+...+++|+.|
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                     0    11222233457777777777776532 2233556777888888777 4433333444447778888


Q ss_pred             Ecc
Q 038776          274 SIT  276 (281)
Q Consensus       274 ~l~  276 (281)
                      +++
T Consensus       344 ~L~  346 (594)
T 2p1m_B          344 RVF  346 (594)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.49  E-value=7.6e-16  Score=132.63  Aligned_cols=167  Identities=18%  Similarity=0.157  Sum_probs=96.0

Q ss_pred             CCCCEEECCCCCCccCCchhccC-----CCcccEeeccCCcccccCCccC-cCCCCCcEEEcccCCCCCCCchhc-----
Q 038776           99 SFLQKLDLRNNSFTNEIPPQIGH-----LRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSEF-----  167 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~~~~~~p~~~-----  167 (281)
                      +.|+.|++++|.+.......+..     .++|++|++++|.++......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45667777776665332222221     2567777777776653222222 234566777777776654333322     


Q ss_pred             CCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----C
Q 038776          168 GSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I  235 (281)
Q Consensus       168 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~  235 (281)
                      ...++|+.|++++|.++..    ++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2456677777777776532    333445566777777777776532    244455566777777777777632    2


Q ss_pred             CccccCCCCCCEEEcccCcccccCChhhhh
Q 038776          236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGT  265 (281)
Q Consensus       236 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~  265 (281)
                      ...+...++|++|++++|.+++.....+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            334445567777777777777555444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=1.5e-15  Score=130.74  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=119.7

Q ss_pred             CCcccEeeccCCcccccCCccC----c-CCCCCcEEEcccCCCCCCCchhc-CCCCCCCEEeCcCCcccccCCccc----
Q 038776          122 LRRLQILYLQINSFDGEIPASI----S-NCSNLLVVSLALNHLAGKIPSEF-GSLSKLQFLSTTANNLTGNIPSSL----  191 (281)
Q Consensus       122 l~~L~~L~l~~n~~~~~~p~~l----~-~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~l----  191 (281)
                      +++|+.|++++|.++......+    . ..++|++|++++|.++......+ ..+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999875333322    2 23799999999999874333332 345689999999999975433333    


Q ss_pred             -cCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChh
Q 038776          192 -GNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLD  262 (281)
Q Consensus       192 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~  262 (281)
                       ...++|++|++++|.+++.    ++..+...++|++|++++|.+.+.    ++..+...++|++|++++|.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3468899999999999742    444556788999999999998742    3456677789999999999998644333


Q ss_pred             hhh---CCCCCcEEEcccccCC
Q 038776          263 LGT---TLPNLRIFSITGNQFT  281 (281)
Q Consensus       263 ~~~---~~~~L~~L~l~~N~l~  281 (281)
                      +..   ..++|+.|++++|+|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            322   2699999999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.4e-12  Score=111.22  Aligned_cols=105  Identities=20%  Similarity=0.199  Sum_probs=87.4

Q ss_pred             cEEEcccC-CCCCCCchhcCCCCCCCEEeCcC-CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776          150 LVVSLALN-HLAGKIPSEFGSLSKLQFLSTTA-NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       150 ~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  227 (281)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..+..+++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 777 6788 89999999999996 99986666788899999999999999998888888999999999999


Q ss_pred             cCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776          228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEG  257 (281)
Q Consensus       228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  257 (281)
                      +|++++..+..+..++ |+.|++++|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999865555555554 9999999998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1.3e-11  Score=107.21  Aligned_cols=193  Identities=12%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776           77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  156 (281)
                      ++.+.+.. .+...-...|.++.+|+.++++.|.+......+|. ..+|+.+.+..+ +...-...|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            44444443 33333334566666666666666655533333343 355555555533 3323334455555566665554


Q ss_pred             CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc-----ccccccCCCCCCCCeEecccCcC
Q 038776          157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY-----GSIPDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~  231 (281)
                      + +.......|.. .+|+.+.+. +.++.....++..+++|+.+.+.++.+.     ...+..|.++++|+.+.+.+ .+
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i  311 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI  311 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred             C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence            3 22111222322 344444442 2232222344445555555555544432     12233344455555555542 23


Q ss_pred             cCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776          232 SGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       232 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +......|.++++|+.+.+..+ ++ .+....+.++ +|+.+++++|.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            3223334444455555555333 22 2333333334 45555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.9e-12  Score=110.38  Aligned_cols=105  Identities=23%  Similarity=0.205  Sum_probs=92.1

Q ss_pred             cEeeccCC-cccccCCccCcCCCCCcEEEccc-CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776          126 QILYLQIN-SFDGEIPASISNCSNLLVVSLAL-NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS  203 (281)
Q Consensus       126 ~~L~l~~n-~~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  203 (281)
                      ..++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..+..+++|+.|+|++|.+++..|..+..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 788 6888 99999999999996 99997777889999999999999999998888889999999999999


Q ss_pred             cCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       204 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      +|.+++..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999966555666665 9999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.31  E-value=7e-11  Score=102.62  Aligned_cols=196  Identities=12%  Similarity=0.103  Sum_probs=150.6

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.++++.+.+.......|. ...|+.+.+..+ +...-..+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence            6789999999888854444454 689999999855 66456678999999999999875 44344456666 78999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCccc-----ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLT-----GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  229 (281)
                      .. .+.......|..+++|+.+.+.++.+.     ...+..+..+++|+.+.+.. .++......|.++++|+.+.+..+
T Consensus       256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            54 455455667899999999999887664     24456788999999999984 466455677889999999999665


Q ss_pred             cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCC-CCcEEEccccc
Q 038776          230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLP-NLRIFSITGNQ  279 (281)
Q Consensus       230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~~N~  279 (281)
                       ++..-...|.++ +|+.+++.+|.+. .++...+.+++ +++.|++..+.
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence             654556788888 9999999999887 55555555564 78899887664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.24  E-value=2.5e-12  Score=110.04  Aligned_cols=200  Identities=14%  Similarity=0.186  Sum_probs=124.3

Q ss_pred             CcEEEEEcCCCCcce-e-------cCccCcCCCCCCEEECCCCCCc---------cCCchhccCCCcccEeeccCCcccc
Q 038776           75 QRVTILDLQNLKLAG-T-------LPPHIGNLSFLQKLDLRNNSFT---------NEIPPQIGHLRRLQILYLQINSFDG  137 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~  137 (281)
                      .+++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|.+++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456666666554432 1       1233455778899988654321         124455677899999999887322 


Q ss_pred             cCCccCcCCCCCcEEEcccCCCCCCCchhcC--CCCCCCEEeCcC--Cccccc-----CCccc--cCCCCCCeEEcccCC
Q 038776          138 EIPASISNCSNLLVVSLALNHLAGKIPSEFG--SLSKLQFLSTTA--NNLTGN-----IPSSL--GNLSSLRGLSLSRNG  206 (281)
Q Consensus       138 ~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~l--~~l~~L~~L~l~~n~  206 (281)
                      .++. + .+++|++|++..+.+.......+.  .+++|+.|+++.  +...+.     +...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3443 3 378999999988877643333343  788999998853  211111     11122  246889999998888


Q ss_pred             CcccccccC---CCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776          207 FYGSIPDTF---GGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       207 ~~~~~~~~~---~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +.+..+..+   ..+++|+.|+++.|.+.+.    ++..+.++++|+.|++++|.+++..-..+...+  ...+++++++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            764332222   2467899999988888753    233345568899999998888765544444322  4557777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=2.3e-11  Score=103.97  Aligned_cols=180  Identities=13%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             CCCCEEECCCCCCcc-C-------CchhccCCCcccEeeccCCccc---------ccCCccCcCCCCCcEEEcccCCCCC
Q 038776           99 SFLQKLDLRNNSFTN-E-------IPPQIGHLRRLQILYLQINSFD---------GEIPASISNCSNLLVVSLALNHLAG  161 (281)
Q Consensus        99 ~~L~~L~l~~n~~~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~p~~l~~l~~L~~L~l~~n~~~~  161 (281)
                      ..++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|.++++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            346777777554432 1       1233456789999998765321         123344567899999999887321 


Q ss_pred             CCchhcCCCCCCCEEeCcCCcccccCCcccc--CCCCCCeEEcccC--CCcc-----cccccC--CCCCCCCeEecccCc
Q 038776          162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLG--NLSSLRGLSLSRN--GFYG-----SIPDTF--GGLKNLVNLSLVVNN  230 (281)
Q Consensus       162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n--~~~~-----~~~~~~--~~l~~L~~L~l~~n~  230 (281)
                      .++. + .+++|+.|++..+.+.......+.  .+++|++|+|+.+  ...+     .+...+  ..+++|+.|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3333 3 389999999998887644333343  6899999998632  1111     111222  357899999999998


Q ss_pred             CcCCCCccc---cCCCCCCEEEcccCcccccCChhhhh---CCCCCcEEEcccccCC
Q 038776          231 LSGTIPPLI---FNISSIQTFDVGSNYIEGEMPLDLGT---TLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 ~~~~~~~~l---~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~l~~N~l~  281 (281)
                      +....+..+   ..+++|++|+++.|.+.+..+..+..   .+++|+.|++++|.++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            874333333   24689999999999998754444432   3799999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=3.1e-09  Score=82.17  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             ccCcCCCCCcEEEcccC-CCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc-
Q 038776          141 ASISNCSNLLVVSLALN-HLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS-  210 (281)
Q Consensus       141 ~~l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-  210 (281)
                      ..+...++|++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.+.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            33455677777777777 66532    223345556667777776666532    122333345666666666666532 


Q ss_pred             ---ccccCCCCCCCCeEec--ccCcCcCC----CCccccCCCCCCEEEcccCccc
Q 038776          211 ---IPDTFGGLKNLVNLSL--VVNNLSGT----IPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       211 ---~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                         +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               2334444555666666  55555422    2233334455666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.69  E-value=8.2e-11  Score=95.91  Aligned_cols=64  Identities=25%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             CCCCCcEEEcccCCCCC--CCchhcCCCCCCCEEeCcCCcccccCCccccCCC--CCCeEEcccCCCccc
Q 038776          145 NCSNLLVVSLALNHLAG--KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS--SLRGLSLSRNGFYGS  210 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~  210 (281)
                      ++++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|.+.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence            45666666666666664  2334444556666666666655532  1122222  555555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=7.7e-09  Score=79.95  Aligned_cols=115  Identities=11%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             hccCCCcccEeeccCC-cccc----cCCccCcCCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc--
Q 038776          118 QIGHLRRLQILYLQIN-SFDG----EIPASISNCSNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN--  186 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n-~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~--  186 (281)
                      .+...++|++|++++| .+..    .+...+...++|++|++++|.+...    +...+...++|++|++++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445555666666655 5442    1223334455566666666655432    122233445566666666655432  


Q ss_pred             --CCccccCCCCCCeEEc--ccCCCccc----ccccCCCCCCCCeEecccCcCc
Q 038776          187 --IPSSLGNLSSLRGLSL--SRNGFYGS----IPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       187 --~~~~l~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                        +...+...++|++|++  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2333444455666666  55555432    2223333455666666655543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=9.3e-08  Score=77.85  Aligned_cols=80  Identities=21%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             CCCCCCeEEcccCCCcc--cccccCCCCCCCCeEecccCcCcCCCCccccCCC--CCCEEEcccCcccccCCh------h
Q 038776          193 NLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS--SIQTFDVGSNYIEGEMPL------D  262 (281)
Q Consensus       193 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~p~------~  262 (281)
                      ++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|++++|++.+.+|.      .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34556666666666554  2334444566666666666666532  2222222  677777777777665552      2


Q ss_pred             hhhCCCCCcEEE
Q 038776          263 LGTTLPNLRIFS  274 (281)
Q Consensus       263 ~~~~~~~L~~L~  274 (281)
                      +...+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            333477777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.51  E-value=1.8e-06  Score=74.58  Aligned_cols=194  Identities=13%  Similarity=0.039  Sum_probs=110.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-----------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-----------------  137 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------  137 (281)
                      ..++.+.+..+. ...-...|..+..|+.+.+..+ +......+|.++..|+.+.+..+....                 
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~  239 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD  239 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence            567777776543 2233456788888999888766 332344567777777776665443210                 


Q ss_pred             ----cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccc
Q 038776          138 ----EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD  213 (281)
Q Consensus       138 ----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  213 (281)
                          .-...+..+..|+.+.+..+... .....+..+..++.+....+.+   ....+..+.+|+.+.+..+ +......
T Consensus       240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~  314 (394)
T 4fs7_A          240 SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEE  314 (394)
T ss_dssp             TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTT
T ss_pred             CceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechh
Confidence                11122334444555554443222 2222344444444444433221   1234555667777776554 4433445


Q ss_pred             cCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      .|.++.+|+.+++..+ ++..-...+.++.+|+.+.+..+ ++ .+....+.++++|+.+++..+
T Consensus       315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            6777788888887544 44344566777788888888665 44 555555666888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.42  E-value=1e-05  Score=69.82  Aligned_cols=86  Identities=12%  Similarity=0.216  Sum_probs=53.3

Q ss_pred             cccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776          190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       190 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  269 (281)
                      ++.++++|+.+.+.. .+.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++ .+....+.+|++
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred             ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence            344455555555532 233233445667778888887654 44334556777788888888644 44 566666666888


Q ss_pred             CcEEEccccc
Q 038776          270 LRIFSITGNQ  279 (281)
Q Consensus       270 L~~L~l~~N~  279 (281)
                      |+.+++.+|.
T Consensus       359 L~~i~~~~~~  368 (394)
T 4gt6_A          359 LNNIEYSGSR  368 (394)
T ss_dssp             CCEEEESSCH
T ss_pred             CCEEEECCce
Confidence            8888887663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.33  E-value=1.1e-05  Score=69.64  Aligned_cols=176  Identities=14%  Similarity=0.019  Sum_probs=109.1

Q ss_pred             CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCC
Q 038776           92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLS  171 (281)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~  171 (281)
                      ...|..+.+|+.+.+..+... ....+|.++.+|+.+.+..+ +.......+.++..|+.+.+..+...  +........
T Consensus       155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~  230 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT  230 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred             hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence            346888999999999866433 45567889999999999876 33244556777777777766554322  111222233


Q ss_pred             CCCEEeC-----------------------cCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776          172 KLQFLST-----------------------TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       172 ~L~~L~l-----------------------~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  228 (281)
                      +|+.+.+                       ..+... .....+.....++.+....+.   .....+..+.+|+.+.+..
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccccccccccccc
Confidence            4444444                       332221 222333344444444433321   1223466778888888865


Q ss_pred             CcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          229 NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      + ++..-...+.++.+|+.+++..+ ++ .+....+.++.+|+.+++..|
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence            5 44344567888899999999754 55 566666667999999998765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=2.6e-07  Score=70.16  Aligned_cols=109  Identities=11%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             CchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC-CcccccccCCCC----CCCCeEecccCc-CcCCCC
Q 038776          163 IPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGL----KNLVNLSLVVNN-LSGTIP  236 (281)
Q Consensus       163 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~  236 (281)
                      +|.....-..|+.|++++|.++......+..+++|++|++++|. +++..-..+..+    ++|++|++++|. ++..--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433334578899999988876655667788899999999885 665443444443    468899998874 765444


Q ss_pred             ccccCCCCCCEEEcccCc-cccc--CChhhhhCCCCCc
Q 038776          237 PLIFNISSIQTFDVGSNY-IEGE--MPLDLGTTLPNLR  271 (281)
Q Consensus       237 ~~l~~~~~L~~L~l~~n~-l~~~--~p~~~~~~~~~L~  271 (281)
                      ..+..+++|++|+++++. +++.  ....+...+|+++
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             HHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            556778889999998884 5532  1223334467665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.26  E-value=3.7e-05  Score=66.30  Aligned_cols=63  Identities=13%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776          213 DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      ..+.+++.|+.+.+. +.++......+.++.+|+.+++..+ ++ .+....+.+|.+|+.+.+..+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence            344555666666654 2333233456667788888888654 44 455555666888888887543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=3.2e-07  Score=69.65  Aligned_cols=84  Identities=12%  Similarity=0.040  Sum_probs=48.9

Q ss_pred             CcccEeeccCCcccccCCccCcCCCCCcEEEcccCC-CCCCCchhcCCC----CCCCEEeCcCCc-ccccCCccccCCCC
Q 038776          123 RRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH-LAGKIPSEFGSL----SKLQFLSTTANN-LTGNIPSSLGNLSS  196 (281)
Q Consensus       123 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~  196 (281)
                      .+|+.||+++|.++..--..+..+++|++|+|++|. ++...-..++.+    ++|++|++++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467788888877764444445667777777777764 443333334443    356666666653 54433344455566


Q ss_pred             CCeEEcccCC
Q 038776          197 LRGLSLSRNG  206 (281)
Q Consensus       197 L~~L~l~~n~  206 (281)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.00  E-value=0.00023  Score=60.86  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeE
Q 038776          145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  224 (281)
                      ...+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......+..+++|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3444555444332 11122233445555555555433 22222334445555555555432 221223345555566666


Q ss_pred             ecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776          225 SLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      .+.++.++..-...+.++.+|+.+.+..+ ++ .+....+.++.+|+.+.+.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            65555554333445555555666655433 33 3333334445555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.97  E-value=0.00018  Score=61.52  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=86.8

Q ss_pred             hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCC
Q 038776          118 QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL  197 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  197 (281)
                      .+.....|+.+.+..+ +.......+.++..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......+..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445556666666543 22233445677788888888765 33334455777888888887544 432334567778888


Q ss_pred             CeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776          198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN  253 (281)
Q Consensus       198 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  253 (281)
                      +.+.+.++.++..-...|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            88888887777455667888888888888654 44344567778888888877544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.44  E-value=0.00026  Score=50.91  Aligned_cols=56  Identities=27%  Similarity=0.396  Sum_probs=34.6

Q ss_pred             eEEcccCCCc-ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          199 GLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       199 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      .++.++++++ ..+|..+  .++++.|+|++|+++...+..+..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664 2445433  245777777777777544455666677777777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.34  E-value=4.1e-05  Score=59.08  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=31.2

Q ss_pred             CCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCc---CcC----CCCccccCCCCCCEEEcccCcc
Q 038776          195 SSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNN---LSG----TIPPLIFNISSIQTFDVGSNYI  255 (281)
Q Consensus       195 ~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~---~~~----~~~~~l~~~~~L~~L~l~~n~l  255 (281)
                      +.|++|+|++|.+.+.    +.+.+..-+.|+.|+|++|.   +..    .+...+..-+.|+.|+++.|.+
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            4566666666665432    22334444556666665432   221    1223444556667777766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00014  Score=56.15  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CCCCCCCEEeCcCC-cccc----cCCccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----
Q 038776          168 GSLSKLQFLSTTAN-NLTG----NIPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----  234 (281)
Q Consensus       168 ~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----  234 (281)
                      ..-+.|+.|+++++ .+..    .+...+..-+.|+.|+|++|.+.+.    +.+.+..-++|+.|+|++|.+...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455666666654 4432    1234455557888889988888743    333444558999999999999743    


Q ss_pred             CCccccCCCCCCEEEcccC---cccccC----ChhhhhCCCCCcEEEccccc
Q 038776          235 IPPLIFNISSIQTFDVGSN---YIEGEM----PLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n---~l~~~~----p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +-..+...+.|++|+|++|   .+.+..    ...+.. -++|+.|+++.|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCC
Confidence            3345667788999999865   444332    223333 6889999998875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.003  Score=45.30  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=44.4

Q ss_pred             CEEeCcCCccc-ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776          174 QFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       174 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  232 (281)
                      ..++.+++.++ ..+|..+  .+++++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36778888776 3456443  357999999999999666667888999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 98.3 bits (243), Expect = 1e-24
 Identities = 77/304 (25%), Positives = 113/304 (37%), Gaps = 58/304 (19%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSP--RHQRVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    +  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  LAG--TLPPHIGNLSFLQKLDLRNN-SFTNEIPPQIGHLRRLQILYL------------- 130
           L     +P  + NL +L  L +    +    IPP I  L +L  LY+             
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 131 -----------QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTT 179
                        N+  G +P SIS+  NL+ ++   N ++G IP  +GS SKL    T 
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 180 ANNLTGNIPSSLGNLSSLRGLSLSRNGF-----------------------YGSIPDTFG 216
           + N             +L  + LSRN                                 G
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 217 GLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276
             KNL  L L  N + GT+P  +  +  + + +V  N + GE+P   G  L    + +  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYA 299

Query: 277 GNQF 280
            N+ 
Sbjct: 300 NNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
                     + +      + +  LDL+N ++ GTLP  +  L FL  L++  N+   EI
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCS 147
            PQ G+L+R  +     N      P  +  C+
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 6e-09
 Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 4/185 (2%)

Query: 53  LGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQK-LDLRNNSF 111
           L + + S +               +  +     +++G +P   G+ S L   + +  N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 112 TNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLS 171
           T +IPP   +L    +   +            S+ +   +     +              
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 172 KLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
               L    N + G +P  L  L  L  L++S N   G IP   G L+     +   N  
Sbjct: 247 NGLDLRN--NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

Query: 232 SGTIP 236
               P
Sbjct: 304 LCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 4e-15
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 14/198 (7%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
            +      +   +T       +  L L   +L       + +L+ L  LDL NN  +N  
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175
           P  +  L +L  L L  N      P  ++  + L  + L  N    +  S   +L  L +
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTY 311

Query: 176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           L+   NN++   P  + +L+ L+ L  + N    S   +   L N+  LS   N +S   
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT 367

Query: 236 PPLIFNISSIQTFDVGSN 253
           P  + N++ I    +   
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 15/188 (7%)

Query: 94  HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153
            +  L+ L+ L   NN  ++  P  I     L  L L  N        ++++ +NL  + 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           LA N ++   P     L+KL  L   AN ++   P  L  L++L  L L+ N      P 
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 303

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF 273
           +   LKNL  L+L  NN+S   P  + +++ +Q     +N +     L     L N+   
Sbjct: 304 SN--LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL---ANLTNINWL 356

Query: 274 SITGNQFT 281
           S   NQ +
Sbjct: 357 SAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 97  NLSFLQKLDLRNNSFTNEIPP-QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155
            L+   K  L   + T+ +    +  +  LQ   L I S DG     +   +NL  ++ +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 156 LNHLAGKIPSEFGSLSKLQFL 176
            N L    P    +L+KL  +
Sbjct: 75  NNQLTDITP--LKNLTKLVDI 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 5e-14
 Identities = 51/251 (20%), Positives = 76/251 (30%), Gaps = 37/251 (14%)

Query: 63  CEWYGVTCSPRH---------QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN 113
           C    V CS                +LDLQN K+         NL  L  L L NN  + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 114 EIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA------------- 160
             P     L +L+ LYL  N               L V    +  +              
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 161 ----------GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS 210
                     G     F  + KL ++     N+T  IP  L    SL  L L  N     
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKV 186

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270
              +  GL NL  L L  N++S      + N   ++   + +N +              +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYI 244

Query: 271 RIFSITGNQFT 281
           ++  +  N  +
Sbjct: 245 QVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 11/193 (5%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
            +++        V        V  L    LK +G        +  L  + + + + T  I
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 165

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175
           P   G    L  L+L  N       AS+   +NL  + L+ N ++        +   L+ 
Sbjct: 166 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF------GGLKNLVNLSLVVN 229
           L    N L   +P  L +   ++ + L  N       + F          +   +SL  N
Sbjct: 224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

Query: 230 NLS-GTIPPLIFN 241
            +    I P  F 
Sbjct: 283 PVQYWEIQPSTFR 295

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-13
 Identities = 44/226 (19%), Positives = 65/226 (28%), Gaps = 5/226 (2%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
           W  S           +       +    N +L    P     L  L  L L         
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175
           P     L  LQ LYLQ N+       +  +  NL  + L  N ++      F  L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           L    N +    P +  +L  L  L L  N       +    L+ L  L L  N      
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                  + +Q F   S+ +   +P  L        +  +  N   
Sbjct: 242 RARPL-WAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 4/192 (2%)

Query: 70  CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILY 129
           C   ++           L   +P  I      Q++ L  N  ++         R L IL+
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKI-PSEFGSLSKLQFLSTTANNLTGNIP 188
           L  N       A+ +  + L  + L+ N     + P+ F  L +L  L      L    P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTF 248
                L++L+ L L  N       DTF  L NL +L L  N +S         + S+   
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 249 DVGSNYIEGEMP 260
            +  N +    P
Sbjct: 183 LLHQNRVAHVHP 194

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 42/206 (20%), Positives = 58/206 (28%), Gaps = 26/206 (12%)

Query: 69  TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128
             S     + + +     L   LPP +        L L  N         +    RL  L
Sbjct: 5   EVSKVASHLEV-NCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 129 YL---------------------QINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEF 167
            L                       ++    +P        L V+ ++ N L        
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 168 GSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227
             L +LQ L    N L    P  L     L  LSL+ N           GL+NL  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL- 179

Query: 228 VNNLSGTIPPLIFNISSIQTFDVGSN 253
             N   TIP   F    +    +  N
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
                +  +           ++  L L N  L       +  L  L  L L+ NS    I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187

Query: 116 PPQIGHLRRLQILYLQINSFD 136
           P        L   +L  N + 
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 9/120 (7%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
                                +          +  +         L++L++ NN    E+
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-EL 299

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175
           P     L RL   +  +               NL  + +  N L  + P    S+  L+ 
Sbjct: 300 PALPPRLERLIASFNHLAEVPELPQ-------NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP 188
              +N+   EI +      +L  ++++ N L  ++P+    L +L      + N    +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEVP 320

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221
               NL     L +  N      PD    +++L
Sbjct: 321 ELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 79  ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGE 138
           +L L +  L  T+  H+  L  +  LDL +N     +PP +  LR L++L    N+ +  
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 58

Query: 139 IPASISNCSNLLVVSLALNHLAG-KIPSEFGSLSKLQFLSTTANNLTG------NIPSSL 191
              +       L   L  N L          S  +L  L+   N+L         +   L
Sbjct: 59  DGVANLPRLQEL--LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 192 GNLSSL 197
            ++SS+
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           + L     +LT  +   L  L  +  L LS N      P     L+ L  L    N    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                + N+  +Q   + +N ++    +    + P L + ++ GN   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 101 LQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGE----IPASISNCSNLLVVSLA 155
           +Q LD++    ++    ++   L++ Q++ L            I +++     L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGN 186
            N L            +         +L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 63  CEWYGVTCSPRHQRVTILDLQNLKL----AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQ 118
                         + +L L +  +      +L   +     L++LDL NN   +    Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 119 IG-----HLRRLQILYLQINSFDGEIPASIS----NCSNLLVVS 153
           +          L+ L L    +  E+   +     +  +L V+S
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 13/135 (9%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNE- 114
                HF             +++   L++  +           S L+ L L +   ++  
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385

Query: 115 ---IPPQIGHLRRLQILYLQINSFDGEIPASIS-----NCSNLLVVSLALNHLAGKIPSE 166
              +   +     L+ L L  N         +          L  + L   + + ++   
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 167 FGSLSK----LQFLS 177
             +L K    L+ +S
Sbjct: 446 LQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 148 NLLVVSLALNHLAGKIPSE-FGSLSKLQFLSTTANNLTG----NIPSSLGNLSSLRGLSL 202
           ++  + +    L+    +E    L + Q +      LT     +I S+L    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
             N                 +  +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 80  LDLQNLKLAGTLPPHI-GNLSFLQKLDLRNNSFTNE----IPPQIGHLRRLQILYLQINS 134
           LD+Q  +L+      +   L   Q + L +   T      I   +     L  L L+ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 135 FDGEIPASISNCSNLLVVSLALNHL 159
                   +     L   S  +  L
Sbjct: 67  LGDVGVHCV--LQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 26/118 (22%)

Query: 164 PSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK 219
                  S L+ L     +++ +    + ++L    SLR L LS N    +      G+ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA------GIL 415

Query: 220 NLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP---LDLGTTLPNLRIFS 274
            LV               +      ++   +   Y   EM      L    P+LR+ S
Sbjct: 416 QLVES-------------VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 78  TILDLQNLKLAGTLPPHIGNLSFLQKLDLR-NNSFTNEIPPQIGHLRRLQILYLQINSFD 136
             LDL    L    P   G L     +  R   SF ++   +     R+Q + L  +  +
Sbjct: 3   QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 137 GE-IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS 177
              +   +S CS L  +SL    L+  I +     S L  L+
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 9e-05
 Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPL 238
                   S    L +SR   +         LK L   S    NL   +P L
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPTL 241

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 165 SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL 224
           +++ +  + + L      +   I +    L     +  S N       D F  L+ L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 225 SLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +  N +      L   +  +    + +N +     LD   +L +L    I  N  T
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 93  PHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV 152
               N    ++LDLR       I      L +   +    N               L  +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 153 SLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSI 211
            +  N +         +L  L  L  T N+L        L +L SL  L + RN      
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 212 PDTFGGLKNLVNL 224
                 +  +  +
Sbjct: 129 HYRLYVIYKVPQV 141

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 4/140 (2%)

Query: 53  LGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFT 112
           L       +               +  L L   K+          L  L+ L+L +N  +
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

Query: 113 NEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSK 172
             +P    HL  L  L L  N F+            L   SL         PS    +  
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPS---KVRD 171

Query: 173 LQFLSTTANNLTGNIPSSLG 192
           +Q      +    +  +S G
Sbjct: 172 VQIKDLPHSEFKCSSENSEG 191

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 74  HQRVTILDLQNLKLAGTLPP------HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI 127
            + V   + + ++L G +PP       +  L   + L L  N+        +  +  L+I
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRI 74

Query: 128 LY 129
           L 
Sbjct: 75  LS 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 56  WNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI 115
              SI   +   +T      ++T L   + K++      + +L  L ++ L+NN  ++  
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS 211

Query: 116 PPQIGHLRRLQILYL 130
           P  + +   L I+ L
Sbjct: 212 P--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 164 PSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223
            +   +LSKL  L    N ++   P  L +L +L  + L  N      P       NL  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 224 LSL 226
           ++L
Sbjct: 222 VTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 143 ISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL 202
           ++N S L  +    N ++   P    SL  L  +    N ++   P  L N S+L  ++L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 203 S 203
           +
Sbjct: 225 T 225

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197
           ++   +S   +    +L L  L  +   +  + +    L+   +++   +     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 198 RGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255
             L+LS N  Y    +        NL  L+L  N L             ++   +  N +
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 256 EGEMPLDLG------TTLPNLRI 272
                             P L  
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLR 150

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 4/153 (2%)

Query: 70  CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI-GHLRRLQIL 128
           C P     + L             H+     L +L + N      +  +    L  L+ L
Sbjct: 5   CCP--HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP 188
            +  +      P +      L  ++L+ N L          LS  + + +          
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221
             L          +               + N 
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 3/137 (2%)

Query: 146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNLSSLRGLSLSR 204
                 +    +               L  L         ++    L  L  LR L++ +
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG 264
           +G     PD F     L  L+ +  N   ++        S+Q   +  N +     L   
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLN-LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 265 TTLPNLRIFSITGNQFT 281
                  +  +   +  
Sbjct: 125 QRWEEEGLGGVPEQKLQ 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.5e-36  Score=254.84  Aligned_cols=247  Identities=31%  Similarity=0.538  Sum_probs=199.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEcCCCCcce--ecCccCcCCCCCCE
Q 038776           30 GNETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRH--QRVTILDLQNLKLAG--TLPPHIGNLSFLQK  103 (281)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~~--~~l~~l~l~~~~l~~--~~~~~~~~l~~L~~  103 (281)
                      |.+.|++||++||+.+.++  ..+.+|..++++|.  |.|+.|....  .+|+.|+++++.+.+  .+|+.++.+++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            7889999999999998643  36889998889994  9999998653  489999999999886  58899999999999


Q ss_pred             EECCC-CCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCc
Q 038776          104 LDLRN-NSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANN  182 (281)
Q Consensus       104 L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  182 (281)
                      |++++ |.+.|.+|..|+++++|++|++++|.+.+..+..+..+++|+++++++|.+.+.+|..+..++.++.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99997 88999999999999999999999999998888888899999999999999988899999999999999999999


Q ss_pred             ccccCCccccCCCCC-CeEEcccCCCcc-----------------------cccccCCCCCCCCeEecccCcCcCCCCcc
Q 038776          183 LTGNIPSSLGNLSSL-RGLSLSRNGFYG-----------------------SIPDTFGGLKNLVNLSLVVNNLSGTIPPL  238 (281)
Q Consensus       183 ~~~~~~~~l~~l~~L-~~L~l~~n~~~~-----------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  238 (281)
                      +.+.+|..+..+.++ +.+++++|++++                       .+|..+..+++++.+++++|.+.+.+| .
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~  239 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K  239 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-G
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            988888877777665 667666665543                       233444555666666776666665433 4


Q ss_pred             ccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          239 IFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       239 l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++.+++|+.|++++|+++|.+|..+.+ +++|++|++++|+|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~-L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEE
T ss_pred             cccccccccccCccCeecccCChHHhC-CCCCCEEECcCCcc
Confidence            566667777777777777777766665 67777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.8e-26  Score=185.50  Aligned_cols=198  Identities=22%  Similarity=0.208  Sum_probs=171.4

Q ss_pred             cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776           76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  155 (281)
                      +...++-++++++ .+|+.+.  +++++|+|++|.+++..+..|.++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            3445688888887 5676664  57899999999998655678999999999999999998 555 35789999999999


Q ss_pred             cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776          156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  235 (281)
                      +|++. ..+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.+.+..+..+..+++++.+++++|++++..
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            99998 55777889999999999999998766777888899999999999998767777888999999999999999877


Q ss_pred             CccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       236 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +..+..+++|++|++++|+|+ .+|.+++. +++|+.|+|++|++.
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             ccccccccccceeecccCCCc-ccChhHCC-CCCCCEEEecCCCCC
Confidence            788899999999999999999 89998887 899999999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-25  Score=182.37  Aligned_cols=206  Identities=20%  Similarity=0.207  Sum_probs=181.0

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeecc-CCcccccCCccCcCCCCCcEEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQ-INSFDGEIPASISNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~-~n~~~~~~p~~l~~l~~L~~L~  153 (281)
                      ..++.|++++|+++...+..|.+++.|++|++++|.+....+..+..+..++.+... .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            567899999999986666679999999999999999997777888889999998775 5556645577899999999999


Q ss_pred             cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776          154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  233 (281)
                      +++|.+....+..+...++|+.+++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999986677778899999999999999996666778889999999999999997778889999999999999999998


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ..|..+..+++|++|++++|.+.+ ++...+..+++|++|++++|+++
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCC
Confidence            889999999999999999999995 55555555999999999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=5.9e-27  Score=195.90  Aligned_cols=204  Identities=27%  Similarity=0.456  Sum_probs=178.0

Q ss_pred             CCcEEEEEcCC-CCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEE
Q 038776           74 HQRVTILDLQN-LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV  152 (281)
Q Consensus        74 ~~~l~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  152 (281)
                      ...++.|++++ |.+.|.+|..++++++|++|++++|.+.+..+..+..+.+|++++++.|.+.+.+|..++++++|+++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            36889999986 78999999999999999999999999998888889999999999999999988899999999999999


Q ss_pred             EcccCCCCCCCchhcCCCCCC-CEEeCcCCccccc-----------------------CCccccCCCCCCeEEcccCCCc
Q 038776          153 SLALNHLAGKIPSEFGSLSKL-QFLSTTANNLTGN-----------------------IPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       153 ~l~~n~~~~~~p~~~~~l~~L-~~L~l~~n~~~~~-----------------------~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      ++++|.+.+.+|..+..+..+ +.+.++.|++++.                       .|..+..+++++.+++++|.+.
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998888888777665 6677776665443                       4445556788999999999988


Q ss_pred             ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       209 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +.+| .++.+++|+.|++++|+++|.+|..++++++|++|++++|+++|.+|. +.+ +++|+.+++++|++
T Consensus       235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~-L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN-LQRFDVSAYANNKC  303 (313)
T ss_dssp             CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT-GGGSCGGGTCSSSE
T ss_pred             cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-ccc-CCCCCHHHhCCCcc
Confidence            6655 678899999999999999999999999999999999999999999995 343 88999999999973

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.8e-23  Score=172.65  Aligned_cols=212  Identities=26%  Similarity=0.286  Sum_probs=143.9

Q ss_pred             ccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCC
Q 038776           63 CEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN  133 (281)
Q Consensus        63 c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  133 (281)
                      |.+..+.|...         .+.+++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            66677777532         267899999999998555557999999999999999999777888999999999999998


Q ss_pred             cccccCCcc------------------------------------------------CcCCCCCcEEEcccCCCCCCCch
Q 038776          134 SFDGEIPAS------------------------------------------------ISNCSNLLVVSLALNHLAGKIPS  165 (281)
Q Consensus       134 ~~~~~~p~~------------------------------------------------l~~l~~L~~L~l~~n~~~~~~p~  165 (281)
                      +++ .+|..                                                +..+++|+++++++|.+. .+|.
T Consensus        90 ~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          90 QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             ccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            776 33322                                                222344444444444443 2222


Q ss_pred             hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCC
Q 038776          166 EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI  245 (281)
Q Consensus       166 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  245 (281)
                      .  .+++++.|++++|...+..+..+..++.+++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|
T Consensus       168 ~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         168 G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             c--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence            2  2355666666666666555566666677777777777776655666667777777777777776 456667777777


Q ss_pred             CEEEcccCcccccCChhhh------hCCCCCcEEEcccccC
Q 038776          246 QTFDVGSNYIEGEMPLDLG------TTLPNLRIFSITGNQF  280 (281)
Q Consensus       246 ~~L~l~~n~l~~~~p~~~~------~~~~~L~~L~l~~N~l  280 (281)
                      ++|++++|+|+ .++...+      ...++|+.|++++|++
T Consensus       245 ~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         245 QVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            77777777776 4433221      2256677777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.3e-23  Score=167.72  Aligned_cols=178  Identities=26%  Similarity=0.237  Sum_probs=160.7

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      +.++.|++++|.+.+..+..|..+++|++|++++|.++ .+| .++.+++|++|++++|.++ ..+..+..+++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            57999999999999766677999999999999999998 455 3678999999999999998 66778899999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      +++.+....+..+..+.+++.|++.+|.+....+..+..+++++.+++++|++++..+..+..+++|++|+|++|+++ .
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            999999777778889999999999999998666677788999999999999999877888999999999999999999 7


Q ss_pred             CCccccCCCCCCEEEcccCccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      +|..+..+++|+.|+|++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            8888889999999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4e-22  Score=164.01  Aligned_cols=198  Identities=22%  Similarity=0.237  Sum_probs=169.4

Q ss_pred             EEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc-cCC
Q 038776           80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA-LNH  158 (281)
Q Consensus        80 l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~-~n~  158 (281)
                      ++.++.++. .+|..+.  +.+++|++++|.++...+.+|.++++|++|++++|.+.+..+..+..++.++.+++. .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            455666666 5666554  568999999999986566689999999999999999997777788889999999875 456


Q ss_pred             CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCcc
Q 038776          159 LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPL  238 (281)
Q Consensus       159 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  238 (281)
                      +....+..+..+++|+.|++++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|.+++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            66556777999999999999999998666677888899999999999999766778889999999999999999777888


Q ss_pred             ccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          239 IFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       239 l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +..+++|+.+++++|.+++..|..+.. +++|+.|++++|+++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred             hccccccchhhhhhccccccChhHhhh-hhhcccccccccccc
Confidence            999999999999999999776766654 999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.5e-21  Score=162.01  Aligned_cols=195  Identities=23%  Similarity=0.350  Sum_probs=156.2

Q ss_pred             EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      +.++=++.+++ .+|..+.  +.+++|++++|.++...+..|.++++|++|++++|.+....|..+.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            45677777777 6677664  68999999999998444457999999999999999999666788999999999999998


Q ss_pred             CCCCCCchh------------------------------------------------cCCCCCCCEEeCcCCcccccCCc
Q 038776          158 HLAGKIPSE------------------------------------------------FGSLSKLQFLSTTANNLTGNIPS  189 (281)
Q Consensus       158 ~~~~~~p~~------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~~  189 (281)
                      +++ .+|..                                                +..+++|+.+++.+|.+. .+|.
T Consensus        90 ~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          90 QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             ccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            776 22221                                                112345666666666665 3343


Q ss_pred             cccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776          190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       190 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  269 (281)
                      .  .+++|++|++++|...+..+..+..++.++.|++++|.+++..+..+.++++|++|++++|.++ .+|.++.. +++
T Consensus       168 ~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~-l~~  243 (305)
T d1xkua_         168 G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKY  243 (305)
T ss_dssp             S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT-CSS
T ss_pred             c--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc-ccC
Confidence            3  2567888888888887777888889999999999999999877888999999999999999998 78887766 999


Q ss_pred             CcEEEcccccCC
Q 038776          270 LRIFSITGNQFT  281 (281)
Q Consensus       270 L~~L~l~~N~l~  281 (281)
                      |+.|++++|+++
T Consensus       244 L~~L~Ls~N~i~  255 (305)
T d1xkua_         244 IQVVYLHNNNIS  255 (305)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCccC
Confidence            999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.3e-19  Score=139.88  Aligned_cols=166  Identities=24%  Similarity=0.326  Sum_probs=125.0

Q ss_pred             CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776           97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  176 (281)
                      .+..|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .+| .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccc
Confidence            35677888888888763 33 36778888888888888873 44 3567888888888888887 344 57788888888


Q ss_pred             eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      ++.+|.+..  ...+..+++++.+++++|.+++  +..+..+++|+.+++++|++++ ++ .+.++++|++|++++|.++
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence            888887752  3456778888888888888764  2345677889999999998874 33 3778889999999999887


Q ss_pred             ccCChhhhhCCCCCcEEEccc
Q 038776          257 GEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~  277 (281)
                       .+| .+.. +++|+.|+|++
T Consensus       192 -~l~-~l~~-l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLR-ALAG-LKNLDVLELFS  209 (210)
T ss_dssp             -BCG-GGTT-CTTCSEEEEEE
T ss_pred             -CCh-hhcC-CCCCCEEEccC
Confidence             565 3544 88999998875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.8e-18  Score=137.21  Aligned_cols=186  Identities=22%  Similarity=0.318  Sum_probs=153.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.+++.++++.. ++ .+..+++|++|++++|.+.+ ++ .+..+++++++++++|.++ .++ .+..+++|+++++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeec-cc-ccccccccccccccccccc-ccc-ccccccccccccc
Confidence            568899999999884 43 58899999999999999984 33 3889999999999999887 444 5788999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      +++...+  ...+...+.++.+.+..+.+...  ..+..+++|++|++++|.+.+..  .++.+++|+.|++++|++++ 
T Consensus       115 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             TTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             ccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC-
Confidence            9988763  33467788999999999888643  34677899999999999987433  37889999999999999984 


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~  277 (281)
                      ++ .+..+++|++|++++|+++ .++. +. ++++|+.|++++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~-~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQIS-DVSP-LA-NTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCC-BCGG-GT-TCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCC-CCcc-cc-cCCCCCEEEeeC
Confidence            44 4788999999999999998 4553 44 499999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.3e-18  Score=148.29  Aligned_cols=188  Identities=24%  Similarity=0.359  Sum_probs=153.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      +.+..++++++.+.+..|  +...++|++|++++|.+. .+ +.+..+++|+.|++++|.+++ ++ .+..+++|++|++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Cc-chhhcccccchhccccCccCC-CC-cccccccCCEeec
Confidence            556778888888775433  456788999999999887 33 457889999999999999884 33 3778899999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      +++++.+ ++ .+..++.++.+.+..|.+.+  +..+..+++++++++++|.+++..+  +..+++|++|++++|++++ 
T Consensus       271 ~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         271 GANQISN-IS-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             CSSCCCC-CG-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred             cCcccCC-CC-cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-
Confidence            9999874 33 37788999999999998874  3457788999999999999986533  7789999999999999984 


Q ss_pred             CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776          235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      ++ .+.++++|++|++++|++++..|  +. ++++|+.|+|++|.
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l~-~l~~L~~L~L~~Na  384 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQA  384 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--GT-TCTTCSEEECCCEE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--hc-cCCCCCEeeCCCCc
Confidence            44 68899999999999999995443  44 49999999999983

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.3e-18  Score=132.25  Aligned_cols=162  Identities=24%  Similarity=0.387  Sum_probs=120.8

Q ss_pred             CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776           97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  176 (281)
                      .+.++++|+++++.+. .+ +.++.+++|++|++++|.+++ ++. ++++++|++|++++|.+. .++ .+..++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            4567788888888776 33 346778888888888888874 332 778888888888888776 333 47788888888


Q ss_pred             eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      +++++.....  ..+..+++|+.+++++|.+. .++ .+..+++++.|++.+|++++ ++ .++++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC
Confidence            8888877632  34677888889998888876 333 46778889999999888874 33 4778889999999999887


Q ss_pred             ccCChhhhhCCCCCcEE
Q 038776          257 GEMPLDLGTTLPNLRIF  273 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L  273 (281)
                       .++ .+.. +++|+.|
T Consensus       186 -~i~-~l~~-L~~L~~L  199 (199)
T d2omxa2         186 -DIS-VLAK-LTNLESL  199 (199)
T ss_dssp             -CCG-GGGG-CTTCSEE
T ss_pred             -CCc-cccC-CCCCCcC
Confidence             454 3554 8888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2.1e-19  Score=139.03  Aligned_cols=171  Identities=22%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCC-chhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI-PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n  157 (281)
                      +++.++++++ .+|..+.  +++++|++++|.++..+ +..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4555666666 4565543  56778888888776433 445677777777777777777666667777777777777777


Q ss_pred             CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCc
Q 038776          158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  237 (281)
                      ++....|..|.++++|++|++++|++++..+..+..+++|+++++++|.+........ -...++.+.+..+.++...|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            7775555567777777777777777775555666677777777777776653221110 011233344444555444443


Q ss_pred             cccCCCCCCEEEcccCccc
Q 038776          238 LIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       238 ~l~~~~~L~~L~l~~n~l~  256 (281)
                      .+   .+++.++++.|.+.
T Consensus       168 ~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         168 KV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             TT---TTSBGGGSCTTTCC
T ss_pred             hh---cCCEeeecCHhhCc
Confidence            32   33444455555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=139.64  Aligned_cols=201  Identities=19%  Similarity=0.116  Sum_probs=146.2

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCC-chhccCCCcccEeeccC-CcccccCCccCcCCCCCcEE
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI-PPQIGHLRRLQILYLQI-NSFDGEIPASISNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L  152 (281)
                      ..++.|+++++.+....+..|.++++|++|++++|.+...+ +..|..++.++++.+.. +.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46889999999988555556889999999999999887543 44688899999998764 56665667778899999999


Q ss_pred             EcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCC-CCCCeEEcccCCCcccccccCCCCCCCCeE-ecccC
Q 038776          153 SLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNL-SSLRGLSLSRNGFYGSIPDTFGGLKNLVNL-SLVVN  229 (281)
Q Consensus       153 ~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L-~l~~n  229 (281)
                      ++++|.+....+ ..+..++.+..+...++.+....+..+..+ ..++.+++++|+++. ++.......+++++ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhcccccccc
Confidence            999998874322 223445556666666667764444555555 478889999999984 44444445555555 56778


Q ss_pred             cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccc
Q 038776          230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~  277 (281)
                      +++...+..+.++++|++|++++|+++ .+|...+.++++|+.+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence            888544556788999999999999998 67766555577777666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7.7e-18  Score=131.90  Aligned_cols=164  Identities=25%  Similarity=0.347  Sum_probs=138.3

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ..++.++++++.+... + .+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            4578899999988743 3 47789999999999999984 44 3789999999999999998 455 5888999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      ++|.+. . ...+..+++++.+++++|.+++  +..+..+++|+++++++|++++ ++ .+..+++|++|++++|+++ .
T Consensus       120 ~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         120 EHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             cccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            999886 3 3468899999999999999874  3456788999999999999985 33 3788999999999999998 4


Q ss_pred             CCccccCCCCCCEEEccc
Q 038776          235 IPPLIFNISSIQTFDVGS  252 (281)
Q Consensus       235 ~~~~l~~~~~L~~L~l~~  252 (281)
                      ++ .+..+++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            55 688999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.1e-17  Score=142.47  Aligned_cols=194  Identities=26%  Similarity=0.335  Sum_probs=131.7

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCccccc----------------
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGE----------------  138 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------  138 (281)
                      ++++.|++++|.+++. + .++++++|++|++++|.+.+ ++ .++.+++|+.|+++++.+++.                
T Consensus        66 ~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (384)
T d2omza2          66 NNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  141 (384)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             CCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccc
Confidence            6788999999988853 3 38888999999999998873 33 377788888888776544310                


Q ss_pred             -----------------------------------------------CCccC----------------------cCCCCC
Q 038776          139 -----------------------------------------------IPASI----------------------SNCSNL  149 (281)
Q Consensus       139 -----------------------------------------------~p~~l----------------------~~l~~L  149 (281)
                                                                     .....                      ...++|
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L  221 (384)
T d2omza2         142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL  221 (384)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCC
Confidence                                                           00011                      223455


Q ss_pred             cEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc-----------------
Q 038776          150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-----------------  212 (281)
Q Consensus       150 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-----------------  212 (281)
                      ++|++++|.++. + +.+..+++|+.+++++|.+++..  .+..+++|++++++++.+++..+                 
T Consensus       222 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         222 DELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL  297 (384)
T ss_dssp             CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             CEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcccccccccccccccccc
Confidence            555555555542 2 24556677777777777766432  35666777777777776653211                 


Q ss_pred             ---ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          213 ---DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       213 ---~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                         ..+..+++++.+++++|++++. + .+..+++|++|++++|+++ .++ .+.. +++|++|++++|+++
T Consensus       298 ~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~-l~~L~~L~l~~N~l~  364 (384)
T d2omza2         298 EDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLAN-LTNINWLSAGHNQIS  364 (384)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGG-CTTCCEEECCSSCCC
T ss_pred             ccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcC-CCCCCEEECCCCcCC
Confidence               2244557888888888888753 3 3778899999999999998 455 4555 999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7.5e-18  Score=133.58  Aligned_cols=185  Identities=24%  Similarity=0.296  Sum_probs=148.6

Q ss_pred             EEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCC
Q 038776           80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL  159 (281)
Q Consensus        80 l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~  159 (281)
                      ++++.+++.+.+  .+..+.+|++|++.+|.++ .++ .+..+++|++|++++|.+.+..  .+..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            345555555443  3456788999999999998 454 5899999999999999998433  378999999999999988


Q ss_pred             CCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccc
Q 038776          160 AGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI  239 (281)
Q Consensus       160 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  239 (281)
                      + .+ ..+..+++|+.++++++...+.  ..+...+.++.+.++.+.+....  .+...++|+.|++++|.+.+.  ..+
T Consensus        98 ~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l  169 (227)
T d1h6ua2          98 K-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPL  169 (227)
T ss_dssp             S-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             c-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhh
Confidence            7 44 3588999999999999987643  44667889999999999886433  356778999999999998743  347


Q ss_pred             cCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          240 FNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       240 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +++++|+.|++++|.+++ ++. +.. +++|++|++++|+++
T Consensus       170 ~~l~~L~~L~Ls~n~l~~-l~~-l~~-l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISD-ISP-LAS-LPNLIEVHLKNNQIS  208 (227)
T ss_dssp             TTCTTCCEEECCSSCCCC-CGG-GGG-CTTCCEEECTTSCCC
T ss_pred             cccccceecccCCCccCC-Chh-hcC-CCCCCEEECcCCcCC
Confidence            889999999999999984 543 544 999999999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=9.5e-19  Score=135.26  Aligned_cols=172  Identities=20%  Similarity=0.246  Sum_probs=136.2

Q ss_pred             CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccC-CccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCc
Q 038776          101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI-PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTT  179 (281)
Q Consensus       101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  179 (281)
                      .++++.+++.++ .+|..+.  +++++|+|++|.+++.+ +..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            367889999888 7787653  68999999999997544 4567889999999999999998888889999999999999


Q ss_pred             CCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCc-cccCCCCCCEEEcccCccccc
Q 038776          180 ANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP-LIFNISSIQTFDVGSNYIEGE  258 (281)
Q Consensus       180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~  258 (281)
                      +|++++..+..|..+++|++|++++|++++..+..|..+++|+++++++|.+...... ++.  ..++.+.+..+.++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            9999977677889999999999999999977788899999999999999988754321 211  2245556667777656


Q ss_pred             CChhhhhCCCCCcEEEcccccCC
Q 038776          259 MPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       259 ~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      .|..    +.+++.++++.|.|+
T Consensus       165 ~p~~----l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APSK----VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             SSTT----TTTSBGGGSCTTTCC
T ss_pred             CChh----hcCCEeeecCHhhCc
Confidence            6643    455677778887763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.7e-17  Score=127.62  Aligned_cols=160  Identities=24%  Similarity=0.409  Sum_probs=134.1

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      .+++.|+++++++.. + +.+..+++|++|++++|.+++ ++. ++++++|++|++++|.+. .++ .+.++++|++|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            578899999998874 3 347889999999999999984 443 899999999999999887 444 4789999999999


Q ss_pred             ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776          155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  234 (281)
                      +++....  ...+..+++|+.|++++|.+..  .+.+..+++|++|++.+|.+++. + .++.+++|+.|++++|++++ 
T Consensus       114 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         114 FNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             CSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-
T ss_pred             ccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-
Confidence            9998863  3457899999999999999873  34678899999999999999853 3 37889999999999999984 


Q ss_pred             CCccccCCCCCCEE
Q 038776          235 IPPLIFNISSIQTF  248 (281)
Q Consensus       235 ~~~~l~~~~~L~~L  248 (281)
                      ++ .+..+++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            44 57888999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=133.05  Aligned_cols=198  Identities=18%  Similarity=0.167  Sum_probs=147.3

Q ss_pred             EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccC-CccCcCCCCCcEEEccc-
Q 038776           79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI-PASISNCSNLLVVSLAL-  156 (281)
Q Consensus        79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~-  156 (281)
                      .++.++.++. .+|..+.  +++++|++++|.+....+.+|.++++|++|++++|.+...+ +..+..++.++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3444555565 5666553  57899999999998555567999999999999999887544 44678899999999765 


Q ss_pred             CCCCCCCchhcCCCCCCCEEeCcCCcccccCC-ccccCCCCCCeEEcccCCCcccccccCCCC-CCCCeEecccCcCcCC
Q 038776          157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT  234 (281)
Q Consensus       157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~  234 (281)
                      |.+....+..+..+++|+.+++.+|.+....+ ..+..+..+..+...++.+....+..+..+ ..++.+++++|+++. 
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-  167 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-  167 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-
Confidence            66776667778999999999999999874322 123334555555556666664445566655 478899999999984 


Q ss_pred             CCccccCCCCCCEE-EcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          235 IPPLIFNISSIQTF-DVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~~~~l~~~~~L~~L-~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      ++......++++.+ ++++|.++ .+|...+.++++|+.|++++|+++
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            55555556666665 56778888 788777777999999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.1e-15  Score=108.94  Aligned_cols=119  Identities=22%  Similarity=0.285  Sum_probs=75.4

Q ss_pred             cEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccC
Q 038776          150 LVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN  229 (281)
Q Consensus       150 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  229 (281)
                      |+|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            45666666665 333 3566666666666666665 45555666667777777777766 333 3666777777777777


Q ss_pred             cCcCCC-CccccCCCCCCEEEcccCccccc--CChhhhhCCCCCcEE
Q 038776          230 NLSGTI-PPLIFNISSIQTFDVGSNYIEGE--MPLDLGTTLPNLRIF  273 (281)
Q Consensus       230 ~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~--~p~~~~~~~~~L~~L  273 (281)
                      +++... ...+..+++|++|++++|++++.  .+..+...+|+|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            776322 24566777888888888877632  234455557888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.3e-16  Score=115.28  Aligned_cols=125  Identities=15%  Similarity=0.154  Sum_probs=66.9

Q ss_pred             CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeE
Q 038776          145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  224 (281)
                      +..++++|++++|+++ .++..+..+++|+.|++++|.++ .+ +.+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4445555555555554 33433444555555555555554 22 234555666666666666653333334455666666


Q ss_pred             ecccCcCcCCCC--ccccCCCCCCEEEcccCcccccCCh---hhhhCCCCCcEEE
Q 038776          225 SLVVNNLSGTIP--PLIFNISSIQTFDVGSNYIEGEMPL---DLGTTLPNLRIFS  274 (281)
Q Consensus       225 ~l~~n~~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~  274 (281)
                      ++++|+++. ++  ..+..+++|++|++++|+++ ..|.   .+...+|+|+.||
T Consensus        93 ~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            666666652 22  34556666777777777665 3332   1222367777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=4.2e-14  Score=118.26  Aligned_cols=188  Identities=21%  Similarity=0.212  Sum_probs=119.4

Q ss_pred             CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776           75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  154 (281)
                      ++++.|++++|+++ .+|..+   .+|+.|++++|.+. .++..   .+.|++|++++|.+. .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceeecc
Confidence            67889999999888 566544   56788888888776 33321   235888888888877 5564 567788888888


Q ss_pred             ccCCCCCCC------------------chhcCCCCCCCEEeCcCCccccc------------------CCccccCCCCCC
Q 038776          155 ALNHLAGKI------------------PSEFGSLSKLQFLSTTANNLTGN------------------IPSSLGNLSSLR  198 (281)
Q Consensus       155 ~~n~~~~~~------------------p~~~~~l~~L~~L~l~~n~~~~~------------------~~~~l~~l~~L~  198 (281)
                      +++.+....                  +..+..++.++.+.+..|.....                  ....+..++.|+
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            777655211                  11233445566666655543210                  011223445666


Q ss_pred             eEEcccCCCccc--------------------------------------------------------ccccCCCCCCCC
Q 038776          199 GLSLSRNGFYGS--------------------------------------------------------IPDTFGGLKNLV  222 (281)
Q Consensus       199 ~L~l~~n~~~~~--------------------------------------------------------~~~~~~~l~~L~  222 (281)
                      .+++++|.....                                                        ++.....+++|+
T Consensus       208 ~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~  287 (353)
T d1jl5a_         208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE  287 (353)
T ss_dssp             EEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCC
Confidence            666655432210                                                        000112246899


Q ss_pred             eEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776          223 NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       223 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~  281 (281)
                      +|++++|+++ .+|..   +++|+.|++++|+++ .+|.    .+++|++|++++|+++
T Consensus       288 ~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         288 ELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             EEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             EEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC
Confidence            9999999988 56643   568899999999988 6774    2568999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.2e-15  Score=107.43  Aligned_cols=102  Identities=23%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776          102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  181 (281)
                      |+|++++|.++ .++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            34555555554 333 2455555555555555555 44545555555555555555554 222 2455555555555555


Q ss_pred             cccccC-CccccCCCCCCeEEcccCCCc
Q 038776          182 NLTGNI-PSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       182 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      ++.... ...+..+++|+++++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554221 123444455555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.7e-16  Score=115.15  Aligned_cols=87  Identities=18%  Similarity=0.111  Sum_probs=41.2

Q ss_pred             CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776           95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  174 (281)
                      +.+...+++|++++|.++ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|++....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            334445555555555555 34444445555555555555554 232 244455555555555555422222233344444


Q ss_pred             EEeCcCCccc
Q 038776          175 FLSTTANNLT  184 (281)
Q Consensus       175 ~L~l~~n~~~  184 (281)
                      .|++++|++.
T Consensus        91 ~L~L~~N~i~  100 (162)
T d1a9na_          91 ELILTNNSLV  100 (162)
T ss_dssp             EEECCSCCCC
T ss_pred             cceecccccc
Confidence            4444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-16  Score=128.72  Aligned_cols=196  Identities=21%  Similarity=0.205  Sum_probs=138.7

Q ss_pred             CcEEEEEcCCCCccee-cCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCC-ccccc-CCccCcCCCCCcE
Q 038776           75 QRVTILDLQNLKLAGT-LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN-SFDGE-IPASISNCSNLLV  151 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~l~~l~~L~~  151 (281)
                      .+++.++++++.+.+. +...+..+++|++|+++++.+.+..+..++.+++|++|++++| .++.. +...+..+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            5688899998877643 3344678899999999999888777788888999999999986 34421 2222356789999


Q ss_pred             EEcccCC-CCCC-CchhcC-CCCCCCEEeCcCCc--cccc-CCccccCCCCCCeEEcccCC-CcccccccCCCCCCCCeE
Q 038776          152 VSLALNH-LAGK-IPSEFG-SLSKLQFLSTTANN--LTGN-IPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       152 L~l~~n~-~~~~-~p~~~~-~l~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  224 (281)
                      |+++++. ++.. +...+. ..++|+.|+++++.  ++.. +......+++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9999864 3321 122232 34789999998753  3322 22334567899999999864 666677778888999999


Q ss_pred             ecccC-cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCc
Q 038776          225 SLVVN-NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR  271 (281)
Q Consensus       225 ~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~  271 (281)
                      ++++| .+++.....++++++|++|++.++ +++..-..+...+|+|+
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            99985 576655667788899999999988 44433344444467765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5e-16  Score=127.08  Aligned_cols=182  Identities=21%  Similarity=0.228  Sum_probs=138.7

Q ss_pred             cCCCCCCEEECCCCCCccC-CchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC-CCCCC-CchhcCCCCC
Q 038776           96 GNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN-HLAGK-IPSEFGSLSK  172 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~-~p~~~~~l~~  172 (281)
                      .....|++|+++++.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|+++++ .++.. +......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3556899999999987643 4556788999999999999988777778889999999999985 45422 2223457899


Q ss_pred             CCEEeCcCCc-cccc-CCcccc-CCCCCCeEEcccCC--Cccc-ccccCCCCCCCCeEecccC-cCcCCCCccccCCCCC
Q 038776          173 LQFLSTTANN-LTGN-IPSSLG-NLSSLRGLSLSRNG--FYGS-IPDTFGGLKNLVNLSLVVN-NLSGTIPPLIFNISSI  245 (281)
Q Consensus       173 L~~L~l~~n~-~~~~-~~~~l~-~l~~L~~L~l~~n~--~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L  245 (281)
                      |++|++++|. ++.. ....+. ..++|+.|+++++.  +++. +......+++|++|++++| .+++.....+..+++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            9999999874 4322 122233 34789999999763  3322 3334456899999999986 5776677788899999


Q ss_pred             CEEEcccC-cccccCChhhhhCCCCCcEEEcccc
Q 038776          246 QTFDVGSN-YIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       246 ~~L~l~~n-~l~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      ++|++++| .+++.....+.+ +|+|+.|+++++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHhc-CCCCCEEeeeCC
Confidence            99999996 688777777766 999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.8e-15  Score=127.04  Aligned_cols=208  Identities=20%  Similarity=0.230  Sum_probs=143.9

Q ss_pred             CCcEEEEEcCCCCcce---e-------cCccCcCCCCCCEEECCCCCCccC----CchhccCCCcccEeeccCCcccccC
Q 038776           74 HQRVTILDLQNLKLAG---T-------LPPHIGNLSFLQKLDLRNNSFTNE----IPPQIGHLRRLQILYLQINSFDGEI  139 (281)
Q Consensus        74 ~~~l~~l~l~~~~l~~---~-------~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~  139 (281)
                      .++++.++++++....   .       +...+...++|++|++++|.+...    +...+...++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            3677888887664321   1       223355678899999999887643    3334456788999999988765211


Q ss_pred             C----c---------cCcCCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc-----CCccccCCCCC
Q 038776          140 P----A---------SISNCSNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN-----IPSSLGNLSSL  197 (281)
Q Consensus       140 p----~---------~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L  197 (281)
                      .    .         .....+.|+.+++++|.+...    +...+...+.++.|++++|.+...     +...+...++|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence            0    0         113567888999998887633    223355678999999999988642     23446678899


Q ss_pred             CeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCCCC----cccc--CCCCCCEEEcccCcccccCCh----hh
Q 038776          198 RGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIP----PLIF--NISSIQTFDVGSNYIEGEMPL----DL  263 (281)
Q Consensus       198 ~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~--~~~~L~~L~l~~n~l~~~~p~----~~  263 (281)
                      ++|++++|.++..    +...+...++|++|++++|.+++...    ..+.  ..+.|++|++++|.++.....    .+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            9999999988643    44556778999999999999874322    2232  236799999999998764333    33


Q ss_pred             hhCCCCCcEEEcccccCC
Q 038776          264 GTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       264 ~~~~~~L~~L~l~~N~l~  281 (281)
                      ...+++|+.|++++|+|.
T Consensus       298 ~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHCTTCCEEECTTSBSC
T ss_pred             HccCCCCCEEECCCCcCC
Confidence            334789999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=3.4e-15  Score=125.33  Aligned_cols=207  Identities=13%  Similarity=0.129  Sum_probs=137.1

Q ss_pred             CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCCCCcc---C-------CchhccCCCcccEeeccCCccccc--
Q 038776           75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSFTN---E-------IPPQIGHLRRLQILYLQINSFDGE--  138 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~---~-------~~~~~~~l~~L~~L~l~~n~~~~~--  138 (281)
                      ..++.|++++|.+...    +...+...+.|+.++++++....   .       +...+...++|+.|++++|.+...  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5577888888876532    34456677888888888765431   1       223345678888888888877642  


Q ss_pred             --CCccCcCCCCCcEEEcccCCCCCCCchh-------------cCCCCCCCEEeCcCCccccc----CCccccCCCCCCe
Q 038776          139 --IPASISNCSNLLVVSLALNHLAGKIPSE-------------FGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRG  199 (281)
Q Consensus       139 --~p~~l~~l~~L~~L~l~~n~~~~~~p~~-------------~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~  199 (281)
                        +...+...++|++|++++|.+.......             ....+.|+.+.+++|.+...    +...+...+.|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              2333456788888888888765211111             13467788888888877532    2233455678888


Q ss_pred             EEcccCCCccc-----ccccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhhh-----
Q 038776          200 LSLSRNGFYGS-----IPDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGT-----  265 (281)
Q Consensus       200 L~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-----  265 (281)
                      |++++|.+...     +...+...++|+.|++++|.++..    +...+...++|++|++++|.+++.....++.     
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            88888887632     334456678888888888887532    3455667788888888888887654444432     


Q ss_pred             CCCCCcEEEcccccCC
Q 038776          266 TLPNLRIFSITGNQFT  281 (281)
Q Consensus       266 ~~~~L~~L~l~~N~l~  281 (281)
                      ..++|++|++++|+++
T Consensus       271 ~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             SSCCCCEEECCSSCCB
T ss_pred             cCCCCCEEECCCCcCC
Confidence            1466888888888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.43  E-value=7.3e-12  Score=104.31  Aligned_cols=70  Identities=23%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             CCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEE
Q 038776          194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF  273 (281)
Q Consensus       194 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  273 (281)
                      +++|++|++++|.++ .+|..   +++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|..    ...|+.|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~----~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI----PESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC----CTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc----ccccCee
Confidence            468999999999998 66754   578999999999998 56643   468999999999998 77752    3468887


Q ss_pred             Ecc
Q 038776          274 SIT  276 (281)
Q Consensus       274 ~l~  276 (281)
                      .+.
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.4e-13  Score=98.32  Aligned_cols=111  Identities=18%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             cCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC-cccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCC
Q 038776          144 SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN-NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV  222 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  222 (281)
                      +.....+.++.+++.+. ..|..+..+++++.|++.++ .++...+..|..+++|+.|++++|+++...+..|..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            34445567788877776 56777888888888888765 47644456788888888888888888866677788888888


Q ss_pred             eEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776          223 NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE  256 (281)
Q Consensus       223 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  256 (281)
                      .|+|++|+++ .+|.......+|++|++++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            8888888888 44444444456888888888774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=7.6e-16  Score=119.10  Aligned_cols=126  Identities=26%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             CCEEECCCC--CCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776          101 LQKLDLRNN--SFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus       101 L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  178 (281)
                      .+.+++.+.  .+. .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|.....+++|+.|++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccc
Confidence            345555543  222 45566777777777777777776 443 4666777777777777766 44444444455666666


Q ss_pred             cCCcccccCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCc
Q 038776          179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  232 (281)
                      ++|.++. + ..+..+++|++|++++|.+++... ..+..+++|+.|++++|++.
T Consensus       101 ~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         101 SYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6666652 2 234455566666666666552211 23455556666666655554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=8e-16  Score=118.97  Aligned_cols=111  Identities=24%  Similarity=0.325  Sum_probs=55.8

Q ss_pred             ccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCC
Q 038776           93 PHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSK  172 (281)
Q Consensus        93 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  172 (281)
                      ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.++ .+|.....+++|++|++++|.++. + ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence            34455555555555555554 232 2555555555555555554 344333334455555555555542 2 23445555


Q ss_pred             CCEEeCcCCcccccCC-ccccCCCCCCeEEcccCCCc
Q 038776          173 LQFLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       173 L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~  208 (281)
                      |+.|++++|+++.... ..+..+++|++|++++|++.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            5555555555542211 23455555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=96.83  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             CccCcCCCCCCEEECCCC-CCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCC
Q 038776           92 PPHIGNLSFLQKLDLRNN-SFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA  160 (281)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~  160 (281)
                      |..+..+++|++|++++| .++...+.+|.++++|+.|++++|.++...+..|..+++|++|+|++|+++
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            334444455555555433 244333334444555555555555544333444444444444444444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.5e-13  Score=116.29  Aligned_cols=85  Identities=20%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CcEEEEEcCCCCcce----ecCccCcCCCCCCEEECCCCCCccC----Cchhcc-CCCcccEeeccCCccccc----CCc
Q 038776           75 QRVTILDLQNLKLAG----TLPPHIGNLSFLQKLDLRNNSFTNE----IPPQIG-HLRRLQILYLQINSFDGE----IPA  141 (281)
Q Consensus        75 ~~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~l~~n~~~~~----~p~  141 (281)
                      ++++++++++|+++.    .++..+..+++|++|++++|.++..    +...+. ...+|++|++++|.+++.    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            566788888888763    2344567788899999999987532    222222 234799999999988642    455


Q ss_pred             cCcCCCCCcEEEcccCCC
Q 038776          142 SISNCSNLLVVSLALNHL  159 (281)
Q Consensus       142 ~l~~l~~L~~L~l~~n~~  159 (281)
                      .+..+++|++|++++|.+
T Consensus       107 ~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HTTSCTTCCEEECCSSBC
T ss_pred             hhhccccccccccccccc
Confidence            677889999999988865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.7e-11  Score=105.52  Aligned_cols=185  Identities=18%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             CCCCCCEEECCCCCCcc-----CCchhccCCCcccEeeccCCccccc----CCccCcCCCCCcEEEcccCCCCCCCchhc
Q 038776           97 NLSFLQKLDLRNNSFTN-----EIPPQIGHLRRLQILYLQINSFDGE----IPASISNCSNLLVVSLALNHLAGKIPSEF  167 (281)
Q Consensus        97 ~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~~~p~~~  167 (281)
                      ....++.+++.+|.+..     ..+........++.+++++|.+...    ....+...+.++.+++++|.+.......+
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            34566677777665532     1222334456677777777766522    22234456677777777777653222111


Q ss_pred             -----CCCCCCCEEeCcCCcccccCCc----cccCCCCCCeEEcccCCCccc----ccccCC-CCCCCCeEecccCcCcC
Q 038776          168 -----GSLSKLQFLSTTANNLTGNIPS----SLGNLSSLRGLSLSRNGFYGS----IPDTFG-GLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       168 -----~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~l~~n~~~~  233 (281)
                           .....|+.+++++|.++.....    .+...++|++|++++|.+++.    ++..+. ..+.|+.|++++|.++.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence                 2345677888877776643222    223446788888888877542    233332 35668888888887763


Q ss_pred             C----CCccccCCCCCCEEEcccCcccccCChhhhh----CCCCCcEEEcccccCC
Q 038776          234 T----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGT----TLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~----~~~~L~~L~l~~N~l~  281 (281)
                      .    +...+...++|++|++++|.+++.....+.+    .-.+|+.|++++|.++
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            2    3344556677888888888877544443332    2346888888877653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.3e-09  Score=79.22  Aligned_cols=82  Identities=20%  Similarity=0.201  Sum_probs=40.6

Q ss_pred             CCCCCCeEEcccCCCccc--ccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCCh------hhh
Q 038776          193 NLSSLRGLSLSRNGFYGS--IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPL------DLG  264 (281)
Q Consensus       193 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~------~~~  264 (281)
                      .+++|++|++++|+++..  ++..+..+++|+.|++++|.++...+.......+|+.|++++|++.+....      .+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            445555566666655532  122334456666666666666532221222333566666666666533221      233


Q ss_pred             hCCCCCcEEE
Q 038776          265 TTLPNLRIFS  274 (281)
Q Consensus       265 ~~~~~L~~L~  274 (281)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4466666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.6e-09  Score=77.11  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=18.6

Q ss_pred             CCCCCcEEEcccCCCCCCC--chhcCCCCCCCEEeCcCCccc
Q 038776          145 NCSNLLVVSLALNHLAGKI--PSEFGSLSKLQFLSTTANNLT  184 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~n~~~  184 (281)
                      .+++|++|++++|+++...  +..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            4555555555555554211  122334444455555544444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.86  E-value=3.7e-06  Score=61.79  Aligned_cols=61  Identities=15%  Similarity=-0.000  Sum_probs=29.7

Q ss_pred             CCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC-------CCccccCCCCCCEEEcccCc
Q 038776          194 LSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT-------IPPLIFNISSIQTFDVGSNY  254 (281)
Q Consensus       194 l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~l~~~~~L~~L~l~~n~  254 (281)
                      .+.|++|++++|.+.+.    +-..+...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            34555566655555432    222344445566666665543311       22333344566666665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=5.9e-06  Score=60.62  Aligned_cols=110  Identities=14%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             CCCCCCEEeCcCC-ccccc----CCccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----C
Q 038776          169 SLSKLQFLSTTAN-NLTGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I  235 (281)
Q Consensus       169 ~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~  235 (281)
                      +.++|+.|+++++ .+...    +-..+...++|++|++++|.+.+.    +...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 33321    223455667788888888887643    223344568999999999998743    2


Q ss_pred             CccccCCCCCCEEEcccCcccc---c----CChhhhhCCCCCcEEEccccc
Q 038776          236 PPLIFNISSIQTFDVGSNYIEG---E----MPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       236 ~~~l~~~~~L~~L~l~~n~l~~---~----~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      -..+...+.|++|++++|.+..   .    +...+.. .++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~-n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHh-CCCccEeeCcCCC
Confidence            3456777899999999986542   1    2223333 6899999998764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=1.3e-05  Score=58.53  Aligned_cols=64  Identities=14%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             CCCCCcEEEccc-CCCCCC----CchhcCCCCCCCEEeCcCCcccccC----CccccCCCCCCeEEcccCCCc
Q 038776          145 NCSNLLVVSLAL-NHLAGK----IPSEFGSLSKLQFLSTTANNLTGNI----PSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       145 ~l~~L~~L~l~~-n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      +.++|++|++++ +.++..    +...+...++|++|++++|.+....    ...+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            446666666665 334311    1122344555666666665554221    122233345555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=3.6e-05  Score=56.15  Aligned_cols=13  Identities=8%  Similarity=0.107  Sum_probs=6.5

Q ss_pred             CCCCCCeEecccC
Q 038776          217 GLKNLVNLSLVVN  229 (281)
Q Consensus       217 ~l~~L~~L~l~~n  229 (281)
                      ..++|++|++..+
T Consensus       130 ~n~~L~~L~l~~~  142 (166)
T d1io0a_         130 KNTTLLKFGYHFT  142 (166)
T ss_dssp             HCSSCCEEECCCS
T ss_pred             hCCCcCEEeCcCC
Confidence            3455555555444