Citrus Sinensis ID: 038803

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLISFE
Secondary Structure (PSIPRED)
ccccHHHcEEEEEEEccccEEEEEEEcccHHHHHHcccccEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHEEEEEcccccEEEEEEEccHHHHHHHccccEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MGNCQAAEAATVVIqhpgnkieRIYWSVSAIEIMNSNPGHYVALlatsptlksenglpvkqlkllrpddtlLIGRVYRLISFE
Flexible Loop (DISEMBL)
MGNCQAAEAAtvviqhpgnkIERIYWSVSAIEIMNSNPGHYVALLATSPtlksenglpvkqlkllrpddtlligrvyrlisfe
Low Complexity Region (SEG)
MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLISFE
Disordered region (IsUnstruct)
********AATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLIS**
Disordered Region (DISOPRED)
***C*AAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLA***************LKLLRPDDTLLIGRVYRLISFE
Disordered Region (DISEMBL)
********AATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLISFE
Disordered Region (DISPRO)
*GNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLISFE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIGRVYRLISFE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
224095029	184	predicted protein [Populus trichocarpa]	1.0	0.451	0.891	8e-38
255568627	146	conserved hypothetical protein [Ricinus	1.0	0.568	0.891	1e-37
359497315	180	PREDICTED: uncharacterized protein LOC10	1.0	0.461	0.879	3e-37
356511974	180	PREDICTED: uncharacterized protein LOC10	1.0	0.461	0.855	1e-36
449448206	183	PREDICTED: uncharacterized protein LOC10	1.0	0.453	0.892	3e-36
359806136	178	uncharacterized protein LOC100812463 [Gl	1.0	0.466	0.843	9e-36
357476507	168	hypothetical protein MTR_4g097220 [Medic	1.0	0.494	0.843	2e-35
15240787	182	uncharacterized protein [Arabidopsis tha	1.0	0.456	0.785	2e-32
297794211	180	hypothetical protein ARALYDRAFT_919939 [	1.0	0.461	0.761	1e-31
388513355	171	unknown [Lotus japonicus]	1.0	0.485	0.752	1e-28

>gi|224095029|ref|XP_002310335.1| predicted protein [Populus trichocarpa] gi|222853238|gb|EEE90785.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 79/83 (95%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAEAATVVIQHPGNKIERIYWSVSA EIMNSNPGHYVAL+ TSPT ++ENGLP+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHEIMNSNPGHYVALVVTSPTTRTENGLPLK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
          QLKLLRPDDTLLIG VYRL+SFE
Sbjct: 61 QLKLLRPDDTLLIGHVYRLVSFE 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568627|ref|XP_002525287.1| conserved hypothetical protein [Ricinus communis] gi|223535445|gb|EEF37115.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 79/83 (95%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAEAATVVIQHPGNKIERIYWSVSA +IMNSNPGHYVA++  SPT K+ENGLPVK
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHQIMNSNPGHYVAMVVPSPTTKTENGLPVK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
          QLKLLRPDDTLLIG+VYRLISFE
Sbjct: 61 QLKLLRPDDTLLIGQVYRLISFE 83

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497315|ref|XP_002266324.2| PREDICTED: uncharacterized protein LOC100262782 [Vitis vinifera] gi|296080881|emb|CBI18811.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 78/83 (93%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAEAATVVIQHPGNKIERIYWSVSA E+M SNPGHYVAL+ TSPT KSENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAHEVMTSNPGHYVALVVTSPTAKSENGTPLK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
          QLKLLRPDDTLLIG+VYRL+SFE
Sbjct: 61 QLKLLRPDDTLLIGQVYRLVSFE 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511974|ref|XP_003524696.1| PREDICTED: uncharacterized protein LOC100780653 [Glycine max]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 79/83 (95%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAEAATVVIQHPGNKIER+YWS+SA E+MNSNPGHYVAL+ +SPTLK+ENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLKAENGAPMK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
          QLKLLRPDDTL IG+VYRLISFE
Sbjct: 61 QLKLLRPDDTLHIGQVYRLISFE 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448206|ref|XP_004141857.1| PREDICTED: uncharacterized protein LOC101222947 [Cucumis sativus] gi|449499848|ref|XP_004160933.1| PREDICTED: uncharacterized protein LOC101226371 [Cucumis sativus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/84 (89%), Positives = 78/84 (92%), Gaps = 1/84 (1%)

Query: 1  MGNCQAAEAATVVIQHPGN-KIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPV 59
          MGNCQAAEAATVVIQHPGN KIERIYWSVSA EIMNSNPGHYVALL TS T+KSENG P+
Sbjct: 1  MGNCQAAEAATVVIQHPGNQKIERIYWSVSAHEIMNSNPGHYVALLITSSTMKSENGTPI 60

Query: 60 KQLKLLRPDDTLLIGRVYRLISFE 83
          KQLKLLRPDDTLLIG VYRLI+FE
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLITFE 84

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806136|ref|NP_001241193.1| uncharacterized protein LOC100812463 [Glycine max] gi|255641057|gb|ACU20808.1| unknown [Glycine max]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 78/83 (93%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAEAATVVIQHPGNKIER+YWS+SA E+MNSNPGHYVAL+ +SPTL +ENG P+K
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERVYWSLSAHEVMNSNPGHYVALVVSSPTLMAENGTPMK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
          QLKLLRPDDTL IG+VYRLISFE
Sbjct: 61 QLKLLRPDDTLHIGQVYRLISFE 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476507|ref|XP_003608539.1| hypothetical protein MTR_4g097220 [Medicago truncatula] gi|355509594|gb|AES90736.1| hypothetical protein MTR_4g097220 [Medicago truncatula] gi|388515023|gb|AFK45573.1| unknown [Medicago truncatula]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 77/83 (92%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
          MGNCQAAE ATVVI  PGNK+ERIYWSVSA E+MNSNPGHYVAL+ +SPTLKSENG+P+K
Sbjct: 1  MGNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSENGMPLK 60

Query: 61 QLKLLRPDDTLLIGRVYRLISFE 83
           LKLLRPDDTLLIG+VYRLISFE
Sbjct: 61 HLKLLRPDDTLLIGQVYRLISFE 83

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240787|ref|NP_201563.1| uncharacterized protein [Arabidopsis thaliana] gi|9757883|dbj|BAB08470.1| unnamed protein product [Arabidopsis thaliana] gi|32815941|gb|AAP88355.1| At5g67620 [Arabidopsis thaliana] gi|110736456|dbj|BAF00196.1| hypothetical protein [Arabidopsis thaliana] gi|332010985|gb|AED98368.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 76/84 (90%), Gaps = 1/84 (1%)

Query: 1  MGNCQAAEAATVVIQHPG-NKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPV 59
          MGNCQAAEAATV+I HP  NK+ERIYWSV+A +IM SNPGHYVA++ TSPT+K+E GLP+
Sbjct: 1  MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query: 60 KQLKLLRPDDTLLIGRVYRLISFE 83
          KQLKLLRPDDTLLIG VYRL+SFE
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLVSFE 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794211|ref|XP_002864990.1| hypothetical protein ARALYDRAFT_919939 [Arabidopsis lyrata subsp. lyrata] gi|297310825|gb|EFH41249.1| hypothetical protein ARALYDRAFT_919939 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 75/84 (89%), Gaps = 1/84 (1%)

Query: 1  MGNCQAAEAATVVIQHPG-NKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPV 59
          MGNCQAAEAATV+I HP  NK+ERIYWSV+A ++M SNPGHYVA++ TSPT+K+E G P+
Sbjct: 1  MGNCQAAEAATVLIHHPAENKVERIYWSVTASDVMKSNPGHYVAVVVTSPTMKNEKGSPL 60

Query: 60 KQLKLLRPDDTLLIGRVYRLISFE 83
          KQLKLLRPDDTLLIG VYRL+SFE
Sbjct: 61 KQLKLLRPDDTLLIGHVYRLVSFE 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513355|gb|AFK44739.1| unknown [Lotus japonicus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 72/85 (84%), Gaps = 2/85 (2%)

Query: 1  MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPV- 59
          MGNCQAAEAATVVIQHPGNKIERIYWS+SA ++MN NPGHYVAL+  S    + NG P+ 
Sbjct: 1  MGNCQAAEAATVVIQHPGNKIERIYWSLSANQVMNLNPGHYVALVLMSSENNNNNGTPLN 60

Query: 60 -KQLKLLRPDDTLLIGRVYRLISFE 83
           K LKLLRP+DTLLIG+VYRLISFE
Sbjct: 61 SKHLKLLRPEDTLLIGQVYRLISFE 85

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2158651	182	AT5G67620 "AT5G67620" [Arabido	1.0	0.456	0.785	3.7e-32
TAIR|locus:2170693	161	AT5G62900 "AT5G62900" [Arabido	0.987	0.509	0.578	8.3e-19
TAIR|locus:2170116	159	AT5G50090 "AT5G50090" [Arabido	0.975	0.509	0.511	2.3e-16
TAIR|locus:2202690	173	AT1G60010 "AT1G60010" [Arabido	0.975	0.468	0.473	1.8e-14
TAIR|locus:2194616	166	AT1G10530 "AT1G10530" [Arabido	0.975	0.487	0.442	9.1e-13

TAIR|locus:2158651 AT5G67620 "AT5G67620" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 66/84 (78%), Positives = 76/84 (90%)

Query:     1 MGNCQAAEAATVVIQHPG-NKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPV 59
             MGNCQAAEAATV+I HP  NK+ERIYWSV+A +IM SNPGHYVA++ TSPT+K+E GLP+
Sbjct:     1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query:    60 KQLKLLRPDDTLLIGRVYRLISFE 83
             KQLKLLRPDDTLLIG VYRL+SFE
Sbjct:    61 KQLKLLRPDDTLLIGHVYRLVSFE 84

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IDA

TAIR|locus:2170693 AT5G62900 "AT5G62900" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query:     1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVK 60
             MGNCQAAEAAT VIQ P  K  R Y +V+A E++ S+PGH+VALL +S  +     L V 
Sbjct:     1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSS-AVPHGGSLRVT 59

Query:    61 QLKLLRPDDTLLIGRVYRLISFE 83
             ++KLLRP D LL+G VYRLIS E
Sbjct:    60 RIKLLRPSDNLLLGHVYRLISSE 82

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2170116 AT5G50090 "AT5G50090" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query:     1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSEN---GL 57
             MGNCQA + A VVIQHP  K E++   VSA  +M  NPGH V+LL ++  L S +   G 
Sbjct:     1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGG 60

Query:    58 PVK--QLKLLRPDDTLLIGRVYRLIS 81
             P++  ++KLLRP DTL++G VYRLI+
Sbjct:    61 PLRLTRIKLLRPTDTLVLGHVYRLIT 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2202690 AT1G60010 "AT1G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 44/93 (47%), Positives = 58/93 (62%)

Query:     1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALL---------ATSPTL 51
             MGNCQA +AA +V+QHP  KI+R Y  VS  EIM   PGHYV+L+         AT+ T 
Sbjct:     1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60

Query:    52 --KSENGLP-VKQLKLLRPDDTLLIGRVYRLIS 81
               KSE  +    ++KLLRP + L++G  YRLI+
Sbjct:    61 DDKSERKVVRFTRVKLLRPTENLVLGHAYRLIT 93

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2194616 AT1G10530 "AT1G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 42/95 (44%), Positives = 54/95 (56%)

Query:     1 MGNCQAAEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSEN----- 55
             MGNCQA  AA +V+QHPG  I+R Y SVS  E+M   PGHYV+L+      + +N     
Sbjct:     1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60

Query:    56 -GLPVKQLK--------LLRPDDTLLIGRVYRLIS 81
              G   KQ K        LLRP + L++G  YRLI+
Sbjct:    61 KGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLIT 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        83   0.00091  102 3  11 22  0.43    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.69u 0.09s 9.78t   Elapsed:  00:00:00
  Total cpu time:  9.69u 0.09s 9.78t   Elapsed:  00:00:00
  Start:  Thu May  9 19:34:19 2013   End:  Thu May  9 19:34:19 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0019037401 hypothetical protein (184 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	3e-23

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score = 86.6 bits (215), Expect = 3e-23
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 1  MGNCQA------AEAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSE 54
          MGNC +        AATV + HP  K+      V+A E+M   PGH+V          S+
Sbjct: 1  MGNCLSCCLAPSGAAATVKVVHPDGKVREYSRPVTAAELMLEYPGHFVC--------DSD 52

Query: 55 NGLPVKQLKLLRPDDTLLIGRVYRLISFE 83
          +    +++  L PDD L  G++Y L+  E
Sbjct: 53 SLYIGRRIPALPPDDELERGQLYFLLPAE 81

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	99.96

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=99.96  E-value=1.6e-29  Score=171.65  Aligned_cols=75  Identities=39%  Similarity=0.614  Sum_probs=66.3

Q ss_pred             Ccchhhh------hceeeEEEcCCCeeEEEeecccHHHHHhhCCCcEEEeeecCcCcCCCCCcceeeeEeeCCCccccCC
Q 038803            1 MGNCQAA------EAATVVIQHPGNKIERIYWSVSAIEIMNSNPGHYVALLATSPTLKSENGLPVKQLKLLRPDDTLLIG   74 (83)
Q Consensus         1 MGNC~A~------d~a~v~I~hp~GkVe~~~~~vsA~eVM~~nPgH~Va~~~~~~~~~~~~~~~~~riklL~Pd~~L~~G   74 (83)
                      ||||++.      +..+++|+|+||+|++|++|++|+|||.+||||||++.-.        ....+++++|+|||+|+.|
T Consensus         1 MGn~~~~~~~~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~--------~~~~~~~~~l~~d~~L~~G   72 (181)
T PF14009_consen    1 MGNCVSCCLASSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDS--------FRFGRRIKPLPPDEELQPG   72 (181)
T ss_pred             CCCcccccccccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEecccc--------ccCCCcccCCCccCeecCC
Confidence            9999997      8899999999999999999999999999999999965310        1113899999999999999


Q ss_pred             cEEEEeecC
Q 038803           75 RVYRLISFE   83 (83)
Q Consensus        75 ~~Y~Li~~~   83 (83)
                      ++|||+|.+
T Consensus        73 ~~Y~llP~~   81 (181)
T PF14009_consen   73 QIYFLLPMS   81 (181)
T ss_pred             CEEEEEEcc
Confidence            999999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00