Citrus Sinensis ID: 038815
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.961 | 0.963 | 0.674 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.965 | 0.974 | 0.650 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.970 | 0.956 | 0.673 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.970 | 0.956 | 0.672 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.969 | 0.950 | 0.651 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.956 | 0.956 | 0.657 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.958 | 0.937 | 0.650 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.974 | 0.964 | 0.631 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.966 | 0.961 | 0.639 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.965 | 0.962 | 0.637 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2031 bits (5262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1459 (67%), Positives = 1164/1459 (79%), Gaps = 78/1459 (5%)
Query: 11 SCLSPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATE 70
S + S S WR+ F RS ++EDD EEALK AALE LPT++ + ++ S G A E
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDEDD-EEALKWAALEKLPTFDRLRKGLLFGSQGAAAE 79
Query: 71 ADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAE 130
D ++ LG Q R+ L+++LV+ DNE FLLKL++R D VGIDLP +EVRYE+LN++A+
Sbjct: 80 VD-INDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDAD 138
Query: 131 AFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRP 190
A++ S++LPTF NF TN +E + LNSL IL +RK+ LTILKD+SGII+P
Sbjct: 139 AYVGSRSLPTFMNFMTNFVETL------------LNSLHILSSRKRQLTILKDISGIIKP 186
Query: 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNH 250
MTLLLGPPSSGKTTLLLALAGKLD +LKV+G+V+YNGH + EF PQR AAYISQHD H
Sbjct: 187 CRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLH 246
Query: 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANV 310
IGEMTVRETL FSARCQGVGSRF+ML EL +RE A IKPD DID++MKAAATEGQEANV
Sbjct: 247 IGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANV 306
Query: 311 LTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSS 365
+TDY LK+LGLDICADT+VGD+MIRGISGGQK+RVTTG P+ ALFMDEIS GLDSS
Sbjct: 307 VTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSS 366
Query: 366 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFE 425
TT+ IVNS+RQ++ IL GTAVISLLQPAPETY+LFDDIILLSDG IVY GPR+ VL+FFE
Sbjct: 367 TTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFE 426
Query: 426 SMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAE 485
SMGFKCP+RKGVADFLQEVTS+KDQQQYW+ + YRF+T +EF EA+QSFHVG+KL E
Sbjct: 427 SMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDE 486
Query: 486 LRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVS 545
L TPFDK+K HPAAL+ ++YG+GKKELLK RE LLMKRNSFVY+FK +QL+ +A+++
Sbjct: 487 LATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALIT 546
Query: 546 MSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPA 605
M+LFFRT+MP+D+ +DGGIY GA FF V+M MFNGMS+++MTI KLPVFYKQRDL F+P+
Sbjct: 547 MTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPS 606
Query: 606 WSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFI 665
W+YA+P+WI+KIP++ +EV WV LTYYVIGFDPN+ RF KQ+LLL+ VNQMA+ +FRFI
Sbjct: 607 WAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFI 666
Query: 666 GAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFL 725
GA GR M VA +FGSFALL+ FALGGFVLSRDD+ WWIWGYW SPMMY+ N+I+ NEF
Sbjct: 667 GAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFD 726
Query: 726 GHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKF 785
G W NE+LG +KSRGFFP AYWYW+G+GA++GF +VFN ++L+L +LN F
Sbjct: 727 GKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPF 786
Query: 786 EKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTET 845
+KP+AV+ ++ E+ E +G SS T S + GD I E ++
Sbjct: 787 DKPQAVLPEDGENAE-------------NGEVSSQIT-STDGGDSISESQNN-------- 824
Query: 846 AVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPG 905
KKGMVLPFEPHS+TFD+VVYSVDMPQEMK QG ED+LVLL GVSGAFRPG
Sbjct: 825 ---------KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPG 875
Query: 906 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSP 965
VLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGY KKQETF RISGYCEQNDIHSP
Sbjct: 876 VLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSP 935
Query: 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025
VTVYESL+YSAWLRLP +VD +TRKMF++E+MELVEL PLR +LVGLPGV+GLSTEQRK
Sbjct: 936 YVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRK 995
Query: 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFES 1085
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFE+
Sbjct: 996 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1055
Query: 1086 FDEAI----------------------------PGVQKIKDGCNPATWMLEVTARSQELA 1117
FDE PGV KIK+G NPATWMLEVTA +QE+
Sbjct: 1056 FDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMM 1115
Query: 1118 LGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSY 1177
LG+DF +YK SDLYRRNKALI EL P PGSKD++F TQYS+SF+ Q +ACLWKQHWSY
Sbjct: 1116 LGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSY 1175
Query: 1178 WRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSV 1237
WRNP Y AVRF+FTT IAL FGTMFWD+GTKV +++DL NAMGSMY AV F+G Q SSV
Sbjct: 1176 WRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSV 1235
Query: 1238 QPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAK 1297
QPVVA+ER VFYRE+ AGMYS +PYAF QV IEIPY+FV SV YG+IVYAMIGFEW K
Sbjct: 1236 QPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGK 1295
Query: 1298 FFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWW 1357
FFWYLF MFFTLLYFTFYGMM VA+TPN ++A+IV+ FYG+WN+FSGF+IPRPR+P WW
Sbjct: 1296 FFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWW 1355
Query: 1358 RWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEFLGVVAVVVAAFA 1417
RWYYWANPVAWT+YGL ASQFGD++ K+ + ETV+QF+R YF FKH+FLGVVA V+ A+
Sbjct: 1356 RWYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYV 1415
Query: 1418 VLFGVLFAAGIKRFNFQNR 1436
+F FA IK FNFQ R
Sbjct: 1416 FMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1976 bits (5118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1472 (65%), Positives = 1141/1472 (77%), Gaps = 85/1472 (5%)
Query: 1 MEGDITYRPTSCLSPSASTWRSTS-EGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRK 59
MEG ++ ++ + ++S W+ S F RS +EEDD EEAL+ AALE LPT++ +
Sbjct: 1 MEGTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDD-EEALRWAALEKLPTFDRLRKG 59
Query: 60 MITNS-SGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEV 118
++T S +G D+ LG Q +KL+++L++ ++E L KL+ R D VGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 119 EVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHL 178
EVR+++L VEAE + +ALPTF NF +N + LN+L ++P RKK
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKF------------LNTLHLVPNRKKKF 167
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
TIL DVSGI++PG M LLLGPPSSGKTTLLLALAGKLD LK +GRVTYNGH M+EF PQ
Sbjct: 168 TILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQ 227
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R AAYI Q+D HIGEMTVRET A++AR QGVGSR+DMLTEL +RE EA IKPDPDID+FM
Sbjct: 228 RTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFM 287
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALAL 353
KA +T G++ NV+TDY LK+LGL++CADT+VGD+M+RGISGGQK+RVTTG P+ AL
Sbjct: 288 KAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRAL 347
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
FMDEIS GLDSSTT+QIVNS+R +HI NGTA+ISLLQPAPET++LFDDIIL+++G I+Y
Sbjct: 348 FMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIY 407
Query: 414 LGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAF 473
GPR+ V++FFE+MGFKCP RKGVADFLQEVTS+KDQ QYWA ++ YRF+ V+EF EAF
Sbjct: 408 EGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAF 467
Query: 474 QSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIF 533
QSFHVG+++ EL PFDK+KSHPAAL+ K+YGVG KEL+K + SRE+LLMKRNSFVY F
Sbjct: 468 QSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYF 527
Query: 534 KLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPV 593
K QL +A ++M+LFFRT+M K + DG +Y GA FF +MM MFNGMS++SMTIAKLPV
Sbjct: 528 KFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPV 587
Query: 594 FYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLF 653
FYKQRDL FYPAW Y+LP W++KIPISF+E A F+TYYVIGFDPNVGR FKQY+LL+
Sbjct: 588 FYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVL 647
Query: 654 VNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMM 713
+NQMA+ALF+ + A GRNMIVA +FG+FA+L+ FALGG VLSRDDI KWWIWGYW SP+M
Sbjct: 648 MNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIM 707
Query: 714 YAQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNV 773
Y QNAI+ANEF GHSW + NS+E+LGV LKSRGF PHAYWYW+G GA++GF+++FN
Sbjct: 708 YGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNF 767
Query: 774 GFTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWE 833
GFTL+LTFLN KP+AVI +E S+E E
Sbjct: 768 GFTLALTFLNSLGKPQAVIAEEPASDET-------------------------------E 796
Query: 834 RSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV 893
S+ S V E +K+GMVLPFEPHS+TFD VVYSVDMPQEM QG ED+LV
Sbjct: 797 LQSARSEGVVEAGAN-----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLV 851
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+ITISGY K Q+TF RI
Sbjct: 852 LLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARI 911
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
SGYCEQ DIHSP VTVYESL+YSAWLRLP EVD RK+FIEE+MELVEL PLRQ+LVGL
Sbjct: 912 SGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGL 971
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
PG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVC
Sbjct: 972 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1031
Query: 1074 TIHQPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATW 1105
TIHQPSIDIFE+FD E+I G+ KI +G NPATW
Sbjct: 1032 TIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATW 1091
Query: 1106 MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQ 1165
MLEV+ SQE ALGVDF +YK S+LY+RNK LI+ELS+P PGSKD+YFPTQYS+SF Q
Sbjct: 1092 MLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQ 1151
Query: 1166 FMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTA 1225
MA LWKQHWSYWRNPPY AVRFLFT IAL FGTMFWD+G K K +DL NAMGSMYTA
Sbjct: 1152 CMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTA 1211
Query: 1226 VFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIV 1285
V F+G Q +SVQPVV VER VFYRE+ AGMYS MPYAFAQV IEIPY+ V ++VYG+IV
Sbjct: 1212 VLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIV 1271
Query: 1286 YAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSG 1345
YAMIGFEWTA KFFWYLFFM+ + L FTFYGMM VAMTPNHHIA++VS+ FYG+WN+FSG
Sbjct: 1272 YAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSG 1331
Query: 1346 FVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGE-TVKQFVRNYFDFKHE 1404
F+IPRP +P WW WYYW PVAWT+YGL ASQFGD+ + M + +VKQF+R ++ ++
Sbjct: 1332 FLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREG 1391
Query: 1405 FLGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
FLGVVA + F +LF V+FA GIK FNFQ R
Sbjct: 1392 FLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1968 bits (5099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1462 (67%), Positives = 1123/1462 (76%), Gaps = 68/1462 (4%)
Query: 16 SASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNS------PFRKMITNSSGEAT 69
S S WR + F RS +EEDD EEAL+ AALE LPTY+ P G
Sbjct: 23 SGSMWRR-GDDVFSRSSREEDD-EEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGK 80
Query: 70 EADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEA 129
DV LGP+ R+ L+++LVR DNE FLLKL+DR D VGID+P +EVR+E+L EA
Sbjct: 81 GVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEA 140
Query: 130 EAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIR 189
E + + LPT N TN +E + N+L ILP RK+ + +L DVSGII+
Sbjct: 141 EVRVGNSGLPTVLNSITNTLE------------EAGNALGILPNRKQTMPVLHDVSGIIK 188
Query: 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249
P MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EF P+R AAYISQHD
Sbjct: 189 PRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDL 248
Query: 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEAN 309
HIGEMTVRETLAFSARCQGVGSRFDMLTEL +RE A IKPD DID FMKAAA GQEAN
Sbjct: 249 HIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEAN 308
Query: 310 VLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDS 364
V TDY LK+LGL+ICADT+VGDEM+RGISGGQ++RVTTG PA ALFMDEIS GLDS
Sbjct: 309 VNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDS 368
Query: 365 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFF 424
STTFQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSDG IVY GPRE VL+FF
Sbjct: 369 STTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFF 428
Query: 425 ESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTA 484
ESMGFKCP+RKGVADFLQEVTS+KDQ+QYWA + YRFVTV+EF AFQSFH G+ +
Sbjct: 429 ESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIAN 488
Query: 485 ELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMV 544
EL PFDKSKSHPAAL+ YG KELLKANI RE LLMKRNSFVY+F+ QL V+++
Sbjct: 489 ELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLI 548
Query: 545 SMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYP 604
+M+LFFRTKM +DSV GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FYP
Sbjct: 549 AMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYP 608
Query: 605 AWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRF 664
AWSY +P+WI+KIPI+F+EV +VFLTYYVIGFD NVG FFKQYLL+L +NQMA +LFRF
Sbjct: 609 AWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRF 668
Query: 665 IGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEF 724
IG A RNMIVA F SF LL+ LGGF+L+R+ + KWWIWGYW SPMMYAQNAI NE
Sbjct: 669 IGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNEL 728
Query: 725 LGHSWRKF--TTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFL 782
+GHSW K ++ SNE+LGVQ LKSRG FP A WYW+G GA+IGF ++FN FTL+LT+L
Sbjct: 729 MGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYL 788
Query: 783 NKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSV 842
+ R + E E EK G + SS S R G E S++
Sbjct: 789 RPYGNSRQSV-SEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGT----ENDSTIVDDD 843
Query: 843 TETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAF 902
TE + ++GMVLPF P SL+FD V YSVDMPQEMK QGV +D+L LL GVSG+F
Sbjct: 844 TE--------VTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSF 895
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI 962
RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGY KKQETF R+SGYCEQNDI
Sbjct: 896 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDI 955
Query: 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022
HSP VTVYESLL+SAWLRLP +VDS TRKMFIEE+MELVEL LR +LVGLPGV+GLSTE
Sbjct: 956 HSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTE 1015
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDI 1082
QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDI
Sbjct: 1016 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDI 1075
Query: 1083 FESFD----------------------------EAIPGVQKIKDGCNPATWMLEVTARSQ 1114
FE+FD E+IPGV KIKDG NPATWMLEVT Q
Sbjct: 1076 FEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQ 1135
Query: 1115 ELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQH 1174
E ALGVDF +IYK S+LY+RNKALI++LS+P P S D+YFPTQYS+S Q MACLWKQ+
Sbjct: 1136 EQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQN 1195
Query: 1175 WSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYC 1234
SYWRNPPYNAVRF FTT IAL FGT+FWD+G KV +++DLFNAMGSMY AV F+G C
Sbjct: 1196 LSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNC 1255
Query: 1235 SSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWT 1294
+SVQPVVAVER VFYRE+ AGMYS PYAF QV+IEIPY V + VYG+IVYAMIGFEWT
Sbjct: 1256 TSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWT 1315
Query: 1295 AAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIP 1354
AAKFFWYLFFM FTLLYFTFYGMM V +TPN+HIA+IVS+ FY +WN+FSGFVIPRPR+P
Sbjct: 1316 AAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVP 1375
Query: 1355 EWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEFLGVVAVVVA 1414
WWRWY WA PVAWT+YGL SQFGD+E ME+G VK FV NYF FKH +LG VA VVA
Sbjct: 1376 IWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVA 1435
Query: 1415 AFAVLFGVLFAAGIKRFNFQNR 1436
AFA LF LF I +FNFQ R
Sbjct: 1436 AFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1966 bits (5094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1462 (67%), Positives = 1122/1462 (76%), Gaps = 68/1462 (4%)
Query: 16 SASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNS------PFRKMITNSSGEAT 69
S S WR + F RS +EEDD EEAL+ AALE LPTY+ P G
Sbjct: 23 SGSMWRR-GDDVFSRSSREEDD-EEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGK 80
Query: 70 EADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEA 129
DV LGP+ R+ L+++LVR DNE FLLKL+DR D VGID+P +EVR+E+L EA
Sbjct: 81 GVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEA 140
Query: 130 EAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIR 189
E + + LPT N TN +E + N+L ILP RK+ + +L DVSGII+
Sbjct: 141 EVRVGNSGLPTVLNSITNTLE------------EAGNALGILPNRKQTMPVLHDVSGIIK 188
Query: 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249
P MTLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EF P+R AAYISQHD
Sbjct: 189 PRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDL 248
Query: 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEAN 309
HIGEMTVRETLAFSARCQGVGSRFDMLTEL +RE A IKPD DID FMKAAA GQEAN
Sbjct: 249 HIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEAN 308
Query: 310 VLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDS 364
V TDY LK+LGL+ICADT+VGDEM+RGISGGQ++RVTTG PA ALFMDEIS GLDS
Sbjct: 309 VNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDS 368
Query: 365 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFF 424
STTFQIVNS+RQ +HIL GTAVISLLQPAPETY+LFDDIILLSDG IVY GPRE VL+FF
Sbjct: 369 STTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFF 428
Query: 425 ESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTA 484
ES GFKCP+RKGVADFLQEVTS+KDQ+QYWA + YRFVTV+EF AFQSFH G+ +
Sbjct: 429 ESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIAN 488
Query: 485 ELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMV 544
EL PFDKSKSHPAAL+ YG KELLKANI RE LLMKRNSFVY+F+ QL V+++
Sbjct: 489 ELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLI 548
Query: 545 SMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYP 604
+M+LFFRTKM +DSV GGIY+GA FF V+M MFNG S++++T+ KLPVF+KQRDL FYP
Sbjct: 549 AMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYP 608
Query: 605 AWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRF 664
AWSY +P+WI+KIPI+F+EV +VFLTYYVIGFD NVG FFKQYLL+L +NQMA +LFRF
Sbjct: 609 AWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRF 668
Query: 665 IGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEF 724
IG A RNMIVA F SF LL+ LGGF+L+R+ + KWWIWGYW SPMMYAQNAI NE
Sbjct: 669 IGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNEL 728
Query: 725 LGHSWRKF--TTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFL 782
+GHSW K ++ SNE+LGVQ LKSRG FP A WYW+G GA+IGF ++FN FTL+LT+L
Sbjct: 729 MGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYL 788
Query: 783 NKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSV 842
+ R + E E EK G + SS S R G E S++
Sbjct: 789 RPYGNSRQSV-SEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGT----ENDSTIVDDD 843
Query: 843 TETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAF 902
TE + ++GMVLPF P SL+FD V YSVDMPQEMK QGV +D+L LL GVSG+F
Sbjct: 844 TE--------VTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSF 895
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI 962
RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGY KKQETF R+SGYCEQNDI
Sbjct: 896 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDI 955
Query: 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022
HSP VTVYESLL+SAWLRLP +VDS TRKMFIEE+MELVEL LR +LVGLPGV+GLSTE
Sbjct: 956 HSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTE 1015
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDI 1082
QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDI
Sbjct: 1016 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDI 1075
Query: 1083 FESFD----------------------------EAIPGVQKIKDGCNPATWMLEVTARSQ 1114
FE+FD E+IPGV KIKDG NPATWMLEVT Q
Sbjct: 1076 FEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQ 1135
Query: 1115 ELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQH 1174
E ALGVDF +IYK S+LY+RNKALI++LS+P P S D+YFPTQYS+S Q MACLWKQ+
Sbjct: 1136 EQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQN 1195
Query: 1175 WSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYC 1234
SYWRNPPYNAVRF FTT IAL FGT+FWD+G KV +++DLFNAMGSMY AV F+G C
Sbjct: 1196 LSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNC 1255
Query: 1235 SSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWT 1294
+SVQPVVAVER VFYRE+ AGMYS PYAF QV+IEIPY V + VYG+IVYAMIGFEWT
Sbjct: 1256 TSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWT 1315
Query: 1295 AAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIP 1354
AAKFFWYLFFM FTLLYFTFYGMM V +TPN+HIA+IVS+ FY +WN+FSGFVIPRPR+P
Sbjct: 1316 AAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVP 1375
Query: 1355 EWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEFLGVVAVVVA 1414
WWRWY WA PVAWT+YGL SQFGD+E ME+G VK FV NYF FKH +LG VA VVA
Sbjct: 1376 IWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVA 1435
Query: 1415 AFAVLFGVLFAAGIKRFNFQNR 1436
AFA LF LF I +FNFQ R
Sbjct: 1436 AFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1907 bits (4940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1469 (65%), Positives = 1131/1469 (76%), Gaps = 77/1469 (5%)
Query: 16 SASTWRSTSEGTFPRS-----PKEEDDDEEALKRAALENLPTYNSPFRKMI------TNS 64
+AS W S G F RS ++ +DDEEAL+ AALE LPTY+ R ++
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 65 SGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYEN 124
+ DV +LGPQ R+ L+++LVR DNE FLLKL++R D VGID+P +EVR+E+
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 125 LNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDV 184
L EAE + + LPT N TN +L+G+ N+L ILP +K+ + IL DV
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTN------------KLEGAANALGILPNKKQTMPILHDV 192
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYI 244
SGI++P MTLLLGPP SGKTTLLLALAG+L +K SG+VTYNGH M++F PQR AAYI
Sbjct: 193 SGIVKPRRMTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYI 252
Query: 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATE 304
SQHD HIGEMTVRETL+FSARCQGVGSRFDMLTEL +RE A IKPD DID FMKA+A E
Sbjct: 253 SQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAME 312
Query: 305 GQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEIS 359
GQE N++TDY LK+LGLDICADT+VGD+M+RGISGGQ++RVTTG PA ALFMDEIS
Sbjct: 313 GQETNLITDYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEIS 372
Query: 360 NGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPREL 419
GLDSSTTFQIV S+RQ IHIL GTAVISLLQPAPETYDLFDDIILLSDG IVY GPRE
Sbjct: 373 TGLDSSTTFQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREG 432
Query: 420 VLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVG 479
VL+FFE MGFKCPERKGVADFLQEVTSRKDQ+QYW + YR+V V++F AFQSFH G
Sbjct: 433 VLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTG 492
Query: 480 QKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLS 539
+ + EL TPFDKSK+HPAAL+ YGV ELLKANI REFLLMKRNSFVYIF+ QL
Sbjct: 493 KSIANELATPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLM 552
Query: 540 TVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRD 599
V+ ++M++FFRTKM +DSV DG I++GA FF+VMM MFNG+S++ +TI KLPVF+KQRD
Sbjct: 553 VVSAIAMTVFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRD 612
Query: 600 LRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMAT 659
L F+PAW+Y +P+WI+KIP+SF+EV +VF++YYVIGFDP+ GRFFKQYLL+L +NQMA
Sbjct: 613 LLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAA 672
Query: 660 ALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAI 719
ALFRF+G A RNMIVA FGSF LL+ LGGF+L R+ + KWWIWGYW SPMMYAQNAI
Sbjct: 673 ALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAI 732
Query: 720 VANEFLGHSWRKFTTN--SNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTL 777
NEFLGHSW K N SNE+LGVQAL+SRG FP A WYW+G GA++GF+++FN FTL
Sbjct: 733 SVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTL 792
Query: 778 SLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSS 837
+LT+L + K + + +E ++ N G L T SS++L
Sbjct: 793 ALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDN------------ 840
Query: 838 MSSSVTETAVEIRNLIR--KKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLL 895
TET+ EI + + ++GMVLPF P SLTFD + YSVDMPQEMK G+ ED+L LL
Sbjct: 841 -----TETSSEIADNSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELL 895
Query: 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISG 955
GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+ITISGY KKQETF R+SG
Sbjct: 896 KGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSG 955
Query: 956 YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015
YCEQNDIHSP VTV ESLL+SAWLRLP +VDS TRKMFIEE+MELVEL PLR +LVGLPG
Sbjct: 956 YCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPG 1015
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
V+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTI
Sbjct: 1016 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1075
Query: 1076 HQPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATWML 1107
HQPSIDIFE+FD E I GV +IKDG NPATWML
Sbjct: 1076 HQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWML 1135
Query: 1108 EVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFM 1167
EV+ SQE ALGVDF +IY+ S+L++RNKALI+ELS P PGS ++YFPT+YS SF Q +
Sbjct: 1136 EVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCL 1195
Query: 1168 ACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVF 1227
ACLWK H SYWRNPPYNA+R FTT IAL FGT+FWD+G K +++DLFNAMGSMY+AV
Sbjct: 1196 ACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVL 1255
Query: 1228 FVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYA 1287
F+G SVQPVV+VER VFYRE+ AGMYS PYAF QV IE PY V S++YG+IVY+
Sbjct: 1256 FIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYS 1315
Query: 1288 MIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFV 1347
MIGF+WTAAKFFWYLFFMFFT LYFTFYGMM V +TP++H+A+IVS+ FYG+WN+FSGF+
Sbjct: 1316 MIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFI 1375
Query: 1348 IPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEFLG 1407
IPRP++P WWRWY W PVAWT+YGL ASQFGD+ M++G VK FV NYFDFKH +LG
Sbjct: 1376 IPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWLG 1435
Query: 1408 VVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
VVAVV+ AF +LF LF I + NFQ R
Sbjct: 1436 VVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1902 bits (4926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1455 (65%), Positives = 1156/1455 (79%), Gaps = 82/1455 (5%)
Query: 16 SASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVS 75
S S WR+ F RS ++EDD EEALK AALE LPTY+ + ++ S G A E D V
Sbjct: 30 SNSIWRNNGAEVFSRSARDEDD-EEALKWAALEKLPTYDRLRKGILFGSQGAAAEVD-VD 87
Query: 76 TLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLAS 135
G R+ L+++LV+ DNE FLLKL++R D VGID P +EVR+E+LN++A+A++ S
Sbjct: 88 DSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGS 147
Query: 136 KALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTL 195
+ALPTFTNF +N +E G L+S+ ILP++K+ +TILKDVSGI++P MTL
Sbjct: 148 RALPTFTNFISNFVE------------GLLDSIHILPSKKRQVTILKDVSGIVKPCRMTL 195
Query: 196 LLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255
LLGPP SGKTTLLLALAGKLDS+LKV+G+VTYNGH + EF PQR AAYISQHD HIGEMT
Sbjct: 196 LLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMT 255
Query: 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY 315
VRETL FSARCQGVGSR++ML EL +RE A IKPD DID+FMKAA+TEGQEA V+TDY
Sbjct: 256 VRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYI 315
Query: 316 LKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQI 370
LK+LGLDICADT+VGD+MIRGISGGQK+RVTTG P+ ALFMDEIS GLDSSTT+ I
Sbjct: 316 LKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSI 375
Query: 371 VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFK 430
VNS++Q++ I+ GTA+ISLLQPAPETY+LFDDIILLSDG IVY GPRE VL+FFESMGFK
Sbjct: 376 VNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFK 435
Query: 431 CPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPF 490
CPERKG ADFLQEVTS+KDQQQYW ++ YRF+T +EF EA+QSFHVG+K++ EL+T F
Sbjct: 436 CPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTF 495
Query: 491 DKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFF 550
DKSKSHPAAL+ ++YG+GK++LLK RE LLM+RNSFVY+FK QL +A+++M++FF
Sbjct: 496 DKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFF 555
Query: 551 RTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYAL 610
RTKMP+DS DGGIY GA FF V+M MFNG+S++ MT+ KLPVFYKQRD FYP+W+YA+
Sbjct: 556 RTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAI 615
Query: 611 PAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGR 670
P+WI+KIP++F EV WVFLTYYV+GFDPNVGRFFKQ+LLLL VNQMA+ALFRFI A GR
Sbjct: 616 PSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGR 675
Query: 671 NMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWR 730
M VA +FG+FALL+ FALGGF+L+R+D+ WWIWGYW SP+MY+ NAI+ NEF G W+
Sbjct: 676 TMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWK 735
Query: 731 KFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRA 790
E LG +++RGFFP AYWYW+G+GA+ GF+++FN+ ++++L +LN F+KP+A
Sbjct: 736 HIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQA 795
Query: 791 VIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIR 850
I DESE+NE ++ + S+ G S+S
Sbjct: 796 TISDESENNESESSP--QITSTQEGDSASEN----------------------------- 824
Query: 851 NLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTAL 910
+KKGMVLPF+PHS+TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTAL
Sbjct: 825 ---KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTAL 881
Query: 911 MGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970
MGVSGAGKTTLMDVLAGRKTGGYI GSI ISGY KKQ+TF RISGYCEQNDIHSP VTV+
Sbjct: 882 MGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVF 941
Query: 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 1030
ESL+YSAWLRLP +V+ E R MF+EE+M+LVEL PLR +LVGLPGV+GLSTEQRKRLTIA
Sbjct: 942 ESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIA 1001
Query: 1031 VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE-- 1088
VELVANPSIIFMDEPTSGLDARAAAIVMR V+NTV+TGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1002 VELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1061
Query: 1089 --------------------------AIPGVQKIKDGCNPATWMLEVTARSQELALGVDF 1122
+IPGV KI +G NPATWMLEVTA SQE+ALGVDF
Sbjct: 1062 LMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDF 1121
Query: 1123 HNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPP 1182
++YK SDLYRRNKALI+ELS P PG+ D++F +++S+ F+ Q MACLWKQHWSYWRNP
Sbjct: 1122 TDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPA 1181
Query: 1183 YNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVA 1242
Y AVR +FTT IAL FGTMFWD+GTKV RN+DL NAMGSMY AV F+G Q SSVQPVV+
Sbjct: 1182 YTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVS 1241
Query: 1243 VERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYL 1302
VER VFYREK AGMYS +PYAFAQV+IEIPY+FV + VYG+IVY+MIGFEWT AKFFW
Sbjct: 1242 VERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDF 1301
Query: 1303 FFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYW 1362
FFMFFT LYFTF+GMMTVA+TPN ++A+IV+ FY +WN+FSGF++PRPRIP WWRWYYW
Sbjct: 1302 FFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYW 1361
Query: 1363 ANPVAWTMYGLFASQFGDVEDKM-ENGETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFG 1421
P+AWT+YGL ASQFGD++D + + +TV+QF+R+ F FKH+FLGVVA V+ AFAV+F
Sbjct: 1362 GCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFA 1421
Query: 1422 VLFAAGIKRFNFQNR 1436
FA GIK FNFQ R
Sbjct: 1422 FTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1899 bits (4918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1449 (65%), Positives = 1113/1449 (76%), Gaps = 73/1449 (5%)
Query: 33 KEEDDDEEALKRAALENLPTYN---SPFRKMITNSSGEATEAD-------DVSTLGPQAR 82
+ E+DDEEAL+ AAL+ LPTY+ + M+ GEA DV +LGP R
Sbjct: 48 RGEEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHER 107
Query: 83 QKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTFT 142
+ L+++LVR DNE FLLKL++R VGID+P +EVR+E+L VEAE + + +PT
Sbjct: 108 RALLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVL 167
Query: 143 NFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSS 202
N TN IE + N+L ILPTRK+ L IL D+SGII+P MTLLLGPP S
Sbjct: 168 NSITNKIE------------EAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGS 215
Query: 203 GKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAF 262
GKTT LLALAG+L LK SG+VTYNGH M++F PQR AAYISQHD HIGEMTVRETL+F
Sbjct: 216 GKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSF 274
Query: 263 SARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322
SARCQGVGSRFDMLTEL +RE A IKPD D+D FMKA+A EGQE+N++TDY LK+LGL+
Sbjct: 275 SARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLE 334
Query: 323 ICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIRQN 377
ICADT+VGD+M+RGISGGQ++RVTTG PA A FMDEIS GLDSSTTFQIV S+RQ
Sbjct: 335 ICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQT 394
Query: 378 IHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGV 437
IHIL GTAVISLLQPAPETYDLFDDIILLSDG IVY GPRE VL+FFE MGFKCPERKGV
Sbjct: 395 IHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGV 454
Query: 438 ADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSHP 497
ADFLQEVTSRKDQ+QYWA + YR+V ++EF AFQSFH G+ + EL TPFDKSKSHP
Sbjct: 455 ADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHP 514
Query: 498 AALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKD 557
AAL+ YGV ELLKANI RE LL+KRNSFVYIF+ QL TV+ ++M++FFRTKM +D
Sbjct: 515 AALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRD 574
Query: 558 SVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKI 617
SV DG I++GA FFAVMM M NG+S++ +TI KLPVF+KQRDL F+PAW+Y +P+WI+K
Sbjct: 575 SVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKS 634
Query: 618 PISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMS 677
P+SF+EV + F++YYVIGFDPNVGRFFKQYLL+L V+QMA ALFRF+G A RN+IVA
Sbjct: 635 PMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANV 694
Query: 678 FGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKFTTN-- 735
FGSF LL+ LGGF+L+RD +NKWWIWGYW SPMMYAQNA+ NEFLGHSW K N
Sbjct: 695 FGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSL 754
Query: 736 SNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDE 795
SNE+LGVQAL SRG FP A WYW+G GA++GF+++FN+ FTL+LT+L K + I +E
Sbjct: 755 SNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE 814
Query: 796 SESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRK 855
++ N G L T SS++L + + S+ T + + + +
Sbjct: 815 ELKEKQANINGNVLDVDTMASSNNL---------------AIVGSTGTGSEIADNSQPTQ 859
Query: 856 KGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSG 915
+GMVLPF P SLTF+++ YSVDMPQEMK G+ ED+L LL GVSG FRPGVLTALMGVSG
Sbjct: 860 RGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSG 919
Query: 916 AGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975
AGKTTLMDVLAGRKTGGYI G+I+ISGY KKQETF R+SGYCEQNDIHSP VTV ESLL+
Sbjct: 920 AGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLF 979
Query: 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1035
SAWLRLP +VDS TRKMFIEE+MELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVA
Sbjct: 980 SAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVA 1039
Query: 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD-------- 1087
NPSIIFMDEPTSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDIFE+FD
Sbjct: 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
Query: 1088 --------------------EAIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYK 1127
E I GV KI DG NPATWMLEVT SQE AL VDF +IY+
Sbjct: 1100 GEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYR 1159
Query: 1128 LSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVR 1187
S+L++RNKALI+ELS P PGS ++YFPTQYS+SF +Q +ACLWKQH SYWRNPPYNA+R
Sbjct: 1160 KSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIR 1219
Query: 1188 FLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAV 1247
FTT IAL FGT+FWD+G K+ +++DLFNAMGSMY AV F+G SVQPVV+VER V
Sbjct: 1220 LFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTV 1279
Query: 1248 FYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFF 1307
FYRE+ AGMYS +PYAF QV IE PY V SV+Y +IVY+MIGF+WT AKFFWYLFFMFF
Sbjct: 1280 FYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFF 1339
Query: 1308 TLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVA 1367
TLLYFTFYGMM V +TP++H+A+IVS+ FY +WN+F+GFVI RP P WWRWY W PVA
Sbjct: 1340 TLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVA 1399
Query: 1368 WTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAG 1427
WT+YGL SQ+GD+ M++G V FV NYFDFKH +LG VAVV+ AF +LF LF
Sbjct: 1400 WTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFA 1459
Query: 1428 IKRFNFQNR 1436
I + NFQ R
Sbjct: 1460 IMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1885 bits (4884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 928/1469 (63%), Positives = 1121/1469 (76%), Gaps = 70/1469 (4%)
Query: 11 SCLSPSASTWRSTSEGTFPRSP---KEEDDDEEALKRAALENLPTYNSPFRKMITNSS-- 65
+ L S WRS + F RS ++EDDDEEAL+ AALE LPTY+ R ++ SS
Sbjct: 9 ASLRREGSMWRSGGD-VFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSED 67
Query: 66 ----GEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVR 121
GE E D V LG + + LI++LVR D+E FLLKLR+R D VGID P +EVR
Sbjct: 68 GGAGGEKVEVD-VGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVR 126
Query: 122 YENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTIL 181
+ENL VEA+ + ++ LPT N TN +E I N+L ILP +K+ +T+L
Sbjct: 127 FENLEVEADVHVGNRGLPTLLNSVTNTVEAIG------------NALHILPNKKQPMTVL 174
Query: 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVA 241
DVSGII+P MTLLLGPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EF P+R A
Sbjct: 175 HDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTA 234
Query: 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAA 301
AYISQHD HIGEMTVRETLAFSARCQGVG+R++MLTEL +RE A IKPD DID++MKA+
Sbjct: 235 AYISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKAS 294
Query: 302 ATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMD 356
A GQE++V+TDY LK+LGLDICADT+VG+EM+RGISGGQ++RVTTG PA ALFMD
Sbjct: 295 AMGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMD 354
Query: 357 EISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGP 416
EIS GLDSSTT+QIVNS+RQ IHIL GTAVISLLQPAPETY+LFDDIILLSDG +VY GP
Sbjct: 355 EISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGP 414
Query: 417 RELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSF 476
RE VL+FFE MGF+CP RKGVADFLQEVTSRKDQ QYW ++ YRFV V++F +AF+SF
Sbjct: 415 REHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSF 474
Query: 477 HVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLT 536
HVG+ + EL PFD+++SHPAAL+ +YGV +KELLKA I RE LLMKRN+F+YIFK
Sbjct: 475 HVGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAV 534
Query: 537 QLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYK 596
L+ +A++ M+ FFRT M D + G IY+GA +FA+ MFNG ++++MT+ KLPVF+K
Sbjct: 535 NLTLMALIVMTTFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFK 593
Query: 597 QRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQ 656
QRDL F+PAW+Y +P+WI++IPI+FLEV +VF+TYYVIGFDP+V RFFKQYLLLL +NQ
Sbjct: 594 QRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQ 653
Query: 657 MATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQ 716
M++ALFRFI GR+M+V+ +FG +LL ALGGF+L+R D+ KWWIWGYW SP+ YAQ
Sbjct: 654 MSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQ 713
Query: 717 NAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFT 776
NAI NEFLGHSW + N +LGV LKSRG F A WYW+GLGA++G+ L+FN+ +T
Sbjct: 714 NAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYT 773
Query: 777 LSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSS 836
++L+ L+ F A + +++ + N TG ++ G + + +I +++S
Sbjct: 774 VALSVLSPFTDSHASMSEDALKEKHANLTGEVVE----GQKDTKSRKQELELSHIADQNS 829
Query: 837 SMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLN 896
++S+ + + +KGMVLPF P S++F++V YSVDMP+ MK QG+ ED+L+LL
Sbjct: 830 GINSADSSAS--------RKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLK 881
Query: 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGY 956
GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGY KKQETF RISGY
Sbjct: 882 GVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGY 941
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
CEQNDIHSP VTVYESL++SAWLRLP EVDSE RKMFIEE+M+LVEL LR +LVGLPGV
Sbjct: 942 CEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGV 1001
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV TGRTVVCTIH
Sbjct: 1002 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIH 1061
Query: 1077 QPSIDIFESFDE----------------------------AIPGVQKIKDGCNPATWMLE 1108
QPSIDIFE+FDE I GV +IKDG NPATWMLE
Sbjct: 1062 QPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLE 1121
Query: 1109 VTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMA 1168
VT+ +QE LGVDF IY+ S+LY+RNK LIEELS P PGS D+ FPTQYSRSF Q +A
Sbjct: 1122 VTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLA 1181
Query: 1169 CLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFF 1228
CLWKQ+WSYWRNP Y AVR LFT IAL FGTMFW++GT+ K+ +DLFNAMGSMY AV +
Sbjct: 1182 CLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLY 1241
Query: 1229 VGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAM 1288
+G Q SVQPVV VER VFYRE+ AGMYS PYAF QV IE+PY+ V +++YGV+VY+M
Sbjct: 1242 IGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSM 1301
Query: 1289 IGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVI 1348
IGFEWT AKF WYLFFM+FTLLYFTFYGMM V +TPN IAAI+S+ FY +WN+FSG++I
Sbjct: 1302 IGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLI 1361
Query: 1349 PRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME-NGETVKQFVRNYFDFKHEFLG 1407
PRP+IP WWRWY W PVAWT+YGL ASQFGD++ +E + TV QFV +YF F H FL
Sbjct: 1362 PRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLW 1421
Query: 1408 VVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
VVAVV FAV F LF+ I +FNFQ R
Sbjct: 1422 VVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1880 bits (4870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1459 (63%), Positives = 1139/1459 (78%), Gaps = 71/1459 (4%)
Query: 16 SASTWRSTS--EGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADD 73
+AS+WR TS F RS +EEDD EEALK AA+E LPTY+ RK I + G E D
Sbjct: 19 TASSWRGTSGRSDAFGRSVREEDD-EEALKWAAIEKLPTYDR-MRKGILTAGG--VEEVD 74
Query: 74 VSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFL 133
+ LG Q R+ LI++LVR DNE FLLKLRDR + VGID P +EVR+ENL+++AEA++
Sbjct: 75 IGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYV 134
Query: 134 ASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSM 193
++ +PTFTNFF+N ++ L++++I+ + K+ ++IL D+SGIIRPG M
Sbjct: 135 GNRGIPTFTNFFSN------------KIMDVLSAMRIVSSGKRPISILHDISGIIRPGRM 182
Query: 194 TLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253
+LLLGPP SGKT+LLLALAGKLDS+LKVSGRVTYNGH+MDEF PQR +AYI QHD HIGE
Sbjct: 183 SLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGE 242
Query: 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTD 313
MTVRETLAFSARCQGVG+R+DMLTEL +RE EA IKPDPDIDV+MKA + EGQE+ V+TD
Sbjct: 243 MTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTD 301
Query: 314 YYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTF 368
Y LK+LGL+ICADT+VGD MIRGISGGQK+RVTTG PA ALFMDEIS GLDSSTT+
Sbjct: 302 YILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTY 361
Query: 369 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMG 428
QIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLS+G IVY GPRE +L+FFE+MG
Sbjct: 362 QIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMG 421
Query: 429 FKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRT 488
FKCPERKGVADFLQEVTSRKDQ QYW ++ YR+++V +F EAF+ FHVG+ L +ELR
Sbjct: 422 FKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRV 481
Query: 489 PFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSL 548
PFD++++HPAAL+ YG+ K EL KA SRE+LLMKRNSFVYIFK+ QL + + M++
Sbjct: 482 PFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTV 541
Query: 549 FFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSY 608
F RTKM + SV DG I++GA F ++ +FNG ++++M+IAKLP+FYKQRDL FYP+W+Y
Sbjct: 542 FLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAY 601
Query: 609 ALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAA 668
ALP W++KIPISFLE A W+ +TYYV+GFDPN+ RFF+ Y+LL+ ++QMA+ LFR + A
Sbjct: 602 ALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAAL 661
Query: 669 GRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHS 728
GR M+VA +FGSFA L+L LGGF++SR++I KWWIWGYW SP+MYAQNAI NEFLGHS
Sbjct: 662 GREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHS 721
Query: 729 WRKFT--TNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFE 786
W K T SN++LGVQ LK RG F A WYW+G+GA++G++++FN+ F L L +L+
Sbjct: 722 WNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLG 781
Query: 787 KPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETA 846
K +AV+ +E + NRTG ++ T G+ S +G ++ + T
Sbjct: 782 KGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAG------RGEITGADT--- 832
Query: 847 VEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGV 906
RK+GMVLPF P S+TFD + YSVDMPQEMK +GV ED+L+LL GVSGAFRPGV
Sbjct: 833 -------RKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGV 885
Query: 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPL 966
LTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISGY KKQETF RI+GYCEQNDIHSP
Sbjct: 886 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPH 945
Query: 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026
VTVYESLLYSAWLRLP EVDSE RKMF+EE+MELVEL LR +LVGLPGV+GLSTEQRKR
Sbjct: 946 VTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKR 1005
Query: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESF 1086
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFE+F
Sbjct: 1006 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1065
Query: 1087 D----------------------------EAIPGVQKIKDGCNPATWMLEVTARSQELAL 1118
D E I GV+KIKDG NPATWMLEVT +QE L
Sbjct: 1066 DELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDIL 1125
Query: 1119 GVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYW 1178
G++F +Y+ SDLY+RNK LI ELS P PGS D++FPTQ+S+ FF Q MACLWKQH SYW
Sbjct: 1126 GINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYW 1185
Query: 1179 RNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQ 1238
RNP Y A R FTT IAL FGT+F ++G K+ + DLFN++GSMY AV F+G Q +VQ
Sbjct: 1186 RNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQ 1245
Query: 1239 PVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKF 1298
P+V VER VFYREK AGMYS +PYAFAQV+IEIP++F+ +VVYG+IVY++IGF+WT KF
Sbjct: 1246 PIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKF 1305
Query: 1299 FWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWR 1358
FWY+FFMFFT +YFTFYGMM VAMTPN IAAIVST FY +WN+F+GF+IPRPRIP WWR
Sbjct: 1306 FWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWR 1365
Query: 1359 WYYWANPVAWTMYGLFASQFGDVEDK-MENGETVKQFVRNYFDFKHEFLGVVAVVVAAFA 1417
WY WA PVAWT+YGL ASQ+GD+ + +E+GE V+ ++R YF F+H++LG VA V FA
Sbjct: 1366 WYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFA 1425
Query: 1418 VLFGVLFAAGIKRFNFQNR 1436
LF +FA IK FNFQ R
Sbjct: 1426 ALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1460 (63%), Positives = 1125/1460 (77%), Gaps = 73/1460 (5%)
Query: 13 LSPSASTWRSTS-EGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEA 71
L S S WRS S F RS +EEDD EEALK AALE LPTY+ + ++T GE E
Sbjct: 19 LRRSVSAWRSPSTSDVFGRSSREEDD-EEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEA 131
D + LG Q R+ L++KLVR DNE FLLKLR+R + VGID P +EVR+E+LN+ AEA
Sbjct: 78 D-IQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEA 136
Query: 132 FLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPG 191
F+ ++ +PT NFF N +I L++L ++P+ K+ ++IL DVSGII+P
Sbjct: 137 FVGNRGVPTLVNFFVNKAIWI------------LSALHLMPSGKRPISILHDVSGIIKPC 184
Query: 192 SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251
MTLLLGPP +GKTTLLLALAGKLD++LKV+G VTYNGH M EF PQR +AYISQHD HI
Sbjct: 185 RMTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHI 244
Query: 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVL 311
GEMTVRETLAFS+RCQGVG+R++MLTEL +RE EA IKPDPD+DV+MKA A EGQE+ V+
Sbjct: 245 GEMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VV 303
Query: 312 TDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSST 366
TDY LK+LGLDICADT+VGD MIRGISGGQK+RVTTG P+ ALFMDEIS GLDSST
Sbjct: 304 TDYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSST 363
Query: 367 TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFES 426
TFQIVNS+RQ++HIL GTA+I+LLQPAPETYDLFDDI+LLSDG IVY GPRE VL+FFES
Sbjct: 364 TFQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFES 423
Query: 427 MGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAEL 486
MGFKCPERKGVADFLQEVTSRKDQQQYW + YRFV V EF EAF+SFHVG KL EL
Sbjct: 424 MGFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEEL 483
Query: 487 RTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSM 546
TPFD+S++HPAAL+ +YG+ K ELLKA I RE+LLMKRNSFVYIFK+ QL +A+++M
Sbjct: 484 STPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAM 543
Query: 547 SLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAW 606
++FFRTK+P++ + D I+ GA F ++ +FNG ++++M+IAKLPVFYKQRDL FYP W
Sbjct: 544 TVFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPW 603
Query: 607 SYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIG 666
+YALP WI+KIPISF+E W+ +TYYVIGFDPNV R F+ YLLL+ ++Q+A+ LFR +
Sbjct: 604 AYALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLA 663
Query: 667 AAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLG 726
A GR+M+VA +FG+FA L+L LGGF+++R+ I K+WIWGYW SP+MYAQNAI NEFLG
Sbjct: 664 AVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLG 723
Query: 727 HSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFE 786
HSW K + ++LG + L++RG F WYW+G+GA+IG++++FN F L L +L+
Sbjct: 724 HSWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLG 783
Query: 787 KPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETA 846
K + + +E+ ++ NRTG ++ +T GS++ T G S
Sbjct: 784 KGQTTVSEEALQEKEANRTGANVELATRGSAA---TSDGGS------------------- 821
Query: 847 VEIR-NLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPG 905
VEIR + RKKGMVLPF P S+TFD V YSVDMPQEMK +GV EDKL+LL GVSGAFRPG
Sbjct: 822 VEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPG 881
Query: 906 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSP 965
VLTALMGVSG GKTTLMDVLAGRKTGGYI G I ISGY K QETF RISGYCEQNDIHSP
Sbjct: 882 VLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSP 941
Query: 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025
VTVYESLLYSAWLRLP EVD + RKMF++E+M+LVELN LR SLVGLPGV+GLSTEQRK
Sbjct: 942 HVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRK 1001
Query: 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFES 1085
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR V+NTV+TGRTVVCTIHQPSIDIFE+
Sbjct: 1002 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEA 1061
Query: 1086 FDE----------------------------AIPGVQKIKDGCNPATWMLEVTARSQELA 1117
FDE +I GV+KIK+ NPATWMLEVT SQE
Sbjct: 1062 FDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEI 1121
Query: 1118 LGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSY 1177
LG++F +Y+ SDLY+RNK LI+ELS P PGSKD++F TQ+S+SF MQ +ACLWKQH SY
Sbjct: 1122 LGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSY 1181
Query: 1178 WRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSV 1237
WRNP Y A R FT IAL FGT+FWD+G K + DL NAMGSMY AV F+G Q +V
Sbjct: 1182 WRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTV 1241
Query: 1238 QPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAK 1297
QP+V VER VFYREK AGMYS +PYA+AQV+IE+P++ V +++YG++VY+MIGF+WTAAK
Sbjct: 1242 QPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAK 1301
Query: 1298 FFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWW 1357
F WY+FFMFFT LYFT+YGMM VAMTPN IAAIV+ FY +WN+F+GF+IPRPRIP WW
Sbjct: 1302 FLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWW 1361
Query: 1358 RWYYWANPVAWTMYGLFASQFGDVEDKMEN-GETVKQFVRNYFDFKHEFLGVVAVVVAAF 1416
RWYYWA PVAWT+YGL SQFG+ D M + ETVK F+R + F+H+FL VV V+V F
Sbjct: 1362 RWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVF 1421
Query: 1417 AVLFGVLFAAGIKRFNFQNR 1436
VLF +FA IK NFQ R
Sbjct: 1422 TVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | ||||||
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.974 | 0.684 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.970 | 0.975 | 0.694 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.977 | 0.446 | 0.714 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.974 | 0.679 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.986 | 0.962 | 0.699 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.955 | 0.950 | 0.687 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.983 | 0.973 | 0.702 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.972 | 0.686 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.986 | 0.975 | 0.670 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.954 | 0.834 | 0.688 | 0.0 |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2076 bits (5380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1009/1473 (68%), Positives = 1180/1473 (80%), Gaps = 83/1473 (5%)
Query: 1 MEGDITYRPTSCL-SPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRK 59
MEG YR ++ L S S++ WR++ F RS +EEDD EEALK AALE LPTYN +
Sbjct: 1 MEGSDIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDD-EEALKWAALEKLPTYNRLRKG 59
Query: 60 MITNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVE 119
++T S G A E D VS LG Q RQKL+++LV+ DNE FLLKL++R D VG+D+P +E
Sbjct: 60 LLTASHGVANEID-VSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIE 118
Query: 120 VRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLT 179
VRYE+LN+EAEAF+ S+ALP+F N TN++E G N L + ++KKH+T
Sbjct: 119 VRYEHLNIEAEAFVGSRALPSFINSVTNVVE------------GFFNLLHVSTSKKKHVT 166
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
ILKDVSGII+P MTLLLGPPSSGKTTLLLAL+GKLD +LKVSGRVTYNGH ++EF PQR
Sbjct: 167 ILKDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQR 226
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
AAYISQHD HIGEMTVRETLAFSARCQGVGSR+DML+EL +RE A IKPDPD+DV+MK
Sbjct: 227 TAAYISQHDLHIGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMK 286
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALF 354
A ATEGQE+N++TDY LK+LGLDICADT+VGDEM+RGISGGQ++RVTTG PA ALF
Sbjct: 287 ATATEGQESNIVTDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALF 346
Query: 355 MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYL 414
MDEIS GLDSSTTFQIV+S+R +HILNGTAVISLLQPAPETYDLFDDIIL+SDG +VY
Sbjct: 347 MDEISTGLDSSTTFQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYH 406
Query: 415 GPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQ 474
GPRE VLDFFESMGF+CPERKGVADFLQEVTS+KDQ QYW ++ YRFVTV +F EAFQ
Sbjct: 407 GPREYVLDFFESMGFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQ 466
Query: 475 SFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFK 534
SFH+G KL EL PFD++KSHPAAL+ K+YG+ KKELLKAN SRE+LLMKRNSFVY+FK
Sbjct: 467 SFHIGGKLGEELTVPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFK 526
Query: 535 LTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVF 594
L+QL +A+V+M+LF RT+M ++++D G+Y GA FF ++ MFNG+++ISMTIAKLPVF
Sbjct: 527 LSQLFIMALVAMTLFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVF 586
Query: 595 YKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFV 654
YKQR+L FYP+W+YA+P+WI+KIP++ +EVA WVFLTYYVIGFDPNVGRFFKQYL+LL V
Sbjct: 587 YKQRNLLFYPSWAYAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIV 646
Query: 655 NQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMY 714
+QMA+ LFR I A GRNMIVA +FG+FA++ + ALGGF+LS+ DI WWIWGYW SP+MY
Sbjct: 647 SQMASGLFRTIAALGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMY 706
Query: 715 AQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVG 774
QNA++ NEFL +SW N+ +LGV+ L+SR FF +YWYWLGLGA++GF+ +FNV
Sbjct: 707 GQNALMVNEFLSNSWH----NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVM 762
Query: 775 FTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQS-STSGSSSSLRTRSGESGDYIWE 833
F L+L FL F+KP+A I ++ SNE GTL G SS R GD + E
Sbjct: 763 FGLALEFLGPFDKPQATITEDESSNE------GTLADIELPGIESSGR------GDSLVE 810
Query: 834 RSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV 893
S +KKGMVLPFEPHS+TFDEVVYSVDMPQEMK QGV ED+LV
Sbjct: 811 SSHG----------------KKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLV 854
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGY KKQETF RI
Sbjct: 855 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARI 914
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
SGYCEQNDIHSP VTVYESLLYSAWLRLP VDS+TRKMFIEE+MELVELNP+R SLVGL
Sbjct: 915 SGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGL 974
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVC
Sbjct: 975 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1034
Query: 1074 TIHQPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATW 1105
TIHQPSIDIFE+FD E+I GV KIKDG NPATW
Sbjct: 1035 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATW 1094
Query: 1106 MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQ 1165
MLEVTA +QEL+LGVDF ++YK SDLYRRNK LI+EL +P PGSKD++FPTQYS+SF +Q
Sbjct: 1095 MLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQ 1154
Query: 1166 FMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTA 1225
ACLWKQ WSYWRNPPY AVRF FTT IAL FGT+FWD+G K DL NA+GSMYTA
Sbjct: 1155 CQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTA 1214
Query: 1226 VFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIV 1285
V F+G Q SSVQPVVA+ER VFYREK AGMYS +PYAFAQ+++E+PY+FV +V YGVIV
Sbjct: 1215 VLFLGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIV 1274
Query: 1286 YAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSG 1345
YAMIGFEWTA KFFWYLFFM+FTLLY+TFYGMMTV +TPNHHIA+IV+ FY +WN+FSG
Sbjct: 1275 YAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSG 1334
Query: 1346 FVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKM--ENGETVKQFVRNYFDFKH 1403
FV+ RP IP WWRWYYWA PVAWT+YGL ASQFGD+ + M E + VK F+ +Y+ KH
Sbjct: 1335 FVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKH 1394
Query: 1404 EFLGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
+F+GV AVVVA AVLF ++FA IK FNFQ R
Sbjct: 1395 DFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2070 bits (5364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1021/1471 (69%), Positives = 1182/1471 (80%), Gaps = 77/1471 (5%)
Query: 1 MEGDITYRPTSCLS-PSASTWRSTSEGTFPRSPK-EEDDDEEALKRAALENLPTYNSPFR 58
MEG Y L +S WRS + F +S + +EDDDEEALK AA+E LPTY+ +
Sbjct: 1 MEGTELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLKK 60
Query: 59 KMITNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEV 118
++T S GEA E D V LG ++ L+D+LV+ DNE FLLKL++R D VGI+LP +
Sbjct: 61 GLLTTSKGEANEID-VKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 119 EVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHL 178
EVR+E+LNVE EA + S+ALPTF NF +I+E G LN L ILP+ KK L
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVE------------GFLNFLHILPSGKKSL 167
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+IL+DVSGII+P MTLLLGPPSSGKTTLLLALAGKLD LK SGRVTYNGH M+EF PQ
Sbjct: 168 SILQDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQ 227
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R AAYISQHD HIGEMTVRETLAF+ARCQGVG R++M++EL +RE + IKPDPDIDVFM
Sbjct: 228 RTAAYISQHDTHIGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFM 287
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALAL 353
KA ATEGQEANV+TDY LK+LGL++CAD +VG+EM+RG+SGGQ++RVTTG PA AL
Sbjct: 288 KAMATEGQEANVVTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKAL 347
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
FMDEIS GLDSSTT+QIVNSI+Q IHILNGTAVISLLQP PETY+LFDDIILLSDG IVY
Sbjct: 348 FMDEISTGLDSSTTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVY 407
Query: 414 LGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAF 473
GPRE VL+FFE MGFKCPERKGVADFLQEVTSRKDQ QYWA K+ Y FVTV+EF EAF
Sbjct: 408 QGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAF 467
Query: 474 QSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIF 533
QSF VG++L AEL TPFDKSKSHPAAL+ K+YGVGK ELLKA SRE LLMKRNSFVYIF
Sbjct: 468 QSFLVGRRLEAELSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIF 527
Query: 534 KLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPV 593
KLTQL+ +AMV+M+LF RT+M +DSV +GGIY+GA FF+V+ MFNG+S+IS+TIAKLPV
Sbjct: 528 KLTQLTIMAMVAMTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPV 587
Query: 594 FYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLF 653
FYKQR L FYP W+++LP WI KIPI+ ++VA WVFLTYYVIGFDPNVGRFFKQYLLL
Sbjct: 588 FYKQRSLLFYPPWAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLAL 647
Query: 654 VNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMM 713
V+QMA+ LFRFI AAGRNMIVA +FGSFALL LFALGGF+LSRD+I KWWIWGYW SP+M
Sbjct: 648 VSQMASGLFRFIAAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLM 707
Query: 714 YAQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNV 773
Y QNAIV NEFLG+SW K ++ E+LG+Q L+SRGFF HAYWYW+G+GA++GF L++N
Sbjct: 708 YGQNAIVVNEFLGNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNF 767
Query: 774 GFTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWE 833
FTL+LTFL +KP+AVI ++S SN SG++G+ I
Sbjct: 768 FFTLALTFLGPLQKPQAVISEDSASNT-----------------------SGKTGEVI-- 802
Query: 834 RSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV 893
+SS TE VE N ++KGMVLPFEPHS+TF+++ YSVDMPQEMK QG ED+L
Sbjct: 803 ---QLSSVRTELIVE-ENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLE 858
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISG+ KKQETF RI
Sbjct: 859 LLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 918
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
SGYCEQNDIHSP VTVYESLLYS+WLRLPPEV+SETRKMFIEE+MELVEL PLRQ+LVGL
Sbjct: 919 SGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGL 978
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVC
Sbjct: 979 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1038
Query: 1074 TIHQPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATW 1105
TIHQPSIDIFE+FD EAI GV IKDG NPATW
Sbjct: 1039 TIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATW 1098
Query: 1106 MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQ 1165
MLEV++ +QE+ LG+DF IYK S+LYRRNKALIEELS P GS D+YFPTQYS+SFF Q
Sbjct: 1099 MLEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQ 1158
Query: 1166 FMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTA 1225
MACLWKQHWSYWRNPPY AVRFLFTT IAL FGTMFWD+G+K + +DLFNAMGSMY A
Sbjct: 1159 CMACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAA 1218
Query: 1226 VFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIV 1285
+ F+G Q SSVQPVVAVER VFYRE+ AGMYS +PYAFAQV+IE+PY+F+ + VYG+IV
Sbjct: 1219 IVFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIV 1278
Query: 1286 YAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSG 1345
YAMIGFEW+AAKFFWYLFFM+FTLL++T+YGMM VA+TPN +A+IVS+ FY +WN+FSG
Sbjct: 1279 YAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSG 1338
Query: 1346 FVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEF 1405
F+IPRPRIP WWRWY W PVA+T+YGL +SQFGD++ +E+GETV+ FVR+YFDFKHE
Sbjct: 1339 FIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHEL 1398
Query: 1406 LGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
LG VA V FA LF FA IK FNFQ R
Sbjct: 1399 LGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2066 bits (5353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1041/1456 (71%), Positives = 1195/1456 (82%), Gaps = 53/1456 (3%)
Query: 16 SASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVS 75
S+S WR++ E F RS ++EDD EEALK AALE LPTYN + ++ S+GEA+E D +
Sbjct: 1705 SSSIWRNSGEEVFSRSSRDEDD-EEALKWAALEKLPTYNRMRKGLLMGSAGEASEVD-IH 1762
Query: 76 TLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLAS 135
LG Q ++ L+++LV+ DNE FLLKLR+R D VGIDLPE+EVR+E+L ++AEA + S
Sbjct: 1763 NLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGS 1822
Query: 136 KALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTL 195
+ALP+F N IE I LN+L+ILP+RKK LTIL DVSGII+P MTL
Sbjct: 1823 RALPSFIYSAFNQIEDI------------LNTLRILPSRKKKLTILHDVSGIIKPRRMTL 1870
Query: 196 LLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255
LLGPPSSGKTTLLLAL+GKLDSSLKV+G+VTYNGH M+EF PQR A YISQHD HIGEMT
Sbjct: 1871 LLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMT 1930
Query: 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY 315
VRETLAFSARCQGVG R+DML EL +RE A IKPDPDIDVFMKA ATEGQ+ NV+TDY
Sbjct: 1931 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYT 1990
Query: 316 LKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQI 370
LK+LGL++CADTLVGD+MIRGISGGQ++RVTTG P+ ALFMDEIS GLDSSTT+QI
Sbjct: 1991 LKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQI 2050
Query: 371 VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFK 430
VNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD IVY GPRE VLDFFESMGF+
Sbjct: 2051 VNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFR 2110
Query: 431 CPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPF 490
CPERKGVADFLQEVTSRKDQQQYWA K+ Y FVTV+EF EAFQSFH+G+KL EL TPF
Sbjct: 2111 CPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPF 2170
Query: 491 DKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFF 550
DK+KSHPAAL ++YGV KKELL A ISRE+LLMKRNSFVYIFKLTQL +A +SM++F
Sbjct: 2171 DKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFL 2230
Query: 551 RTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYAL 610
RT+M K+S +DG IY GA FF V+M MFNGMS+++MTIAKLPVFYKQR L FYPAW+YAL
Sbjct: 2231 RTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYAL 2290
Query: 611 PAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGR 670
P+WI+KIPI+F+EVA WVF++YYVIGFDPNVGR FKQYLLL+ VNQMA+ALFRFI AAGR
Sbjct: 2291 PSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGR 2350
Query: 671 NMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWR 730
NMIVA +FGSF+LL+LFALGGFVLSR+++ KWWIWGYW SP+MYAQNAIV NEFLG SW
Sbjct: 2351 NMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWS 2410
Query: 731 K-FTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPR 789
K +T+S ESLGV LKSRGFF AYWYW+G GA++GF+LVFN +T++LT+LN FEKP+
Sbjct: 2411 KNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQ 2470
Query: 790 AVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEI 849
AVI +ESE +++TGG ++ S+ S +T S E D I SS SSSV A+
Sbjct: 2471 AVITEESE----NSKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAE 2526
Query: 850 RNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTA 909
KKGMVLPF+P S+TFD++ YSVDMP+EMK QGV ED+L LL GVSGAFRPGVLTA
Sbjct: 2527 ARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTA 2586
Query: 910 LMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969
LMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGY KKQETF RISGYCEQNDIHSP VT+
Sbjct: 2587 LMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTI 2646
Query: 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1029
+ESLLYSAWLRLP +VDS+TRKMFIEE+MELVEL PL+ SLVGLPGV+GLSTEQRKRLTI
Sbjct: 2647 HESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTI 2706
Query: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE- 1088
AVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFE+FDE
Sbjct: 2707 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 2766
Query: 1089 ---------------------------AIPGVQKIKDGCNPATWMLEVTARSQELALGVD 1121
I GV KIKDG NPATWMLEVT+ +QE LGVD
Sbjct: 2767 LLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVD 2826
Query: 1122 FHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNP 1181
F IYK SDLYRRNK LI+ELS+P PGSKD+YFPTQYS+SFF Q MACLWKQ SYWRNP
Sbjct: 2827 FTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNP 2886
Query: 1182 PYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVV 1241
PY AVRF FTT IAL FGTMFWD+GTK K+ +DL NAMGSMY AV F+G Q SSVQPVV
Sbjct: 2887 PYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVV 2946
Query: 1242 AVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWY 1301
AVER VFYRE+ AGMYS MPYAFAQ ++EIPY+F +VVYGVIVYAMIGFEWTAAKFFWY
Sbjct: 2947 AVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWY 3006
Query: 1302 LFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYY 1361
LFFMFFTLLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++PR RIP WWRWYY
Sbjct: 3007 LFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYY 3066
Query: 1362 WANPVAWTMYGLFASQFGDVEDKMEN-GETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLF 1420
WA PVAWT+YGL SQFGD++D+ E+ G+TV+Q++ +YF F+H+FLGVVA V+ F VLF
Sbjct: 3067 WACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLF 3126
Query: 1421 GVLFAAGIKRFNFQNR 1436
+FA IK FNFQ R
Sbjct: 3127 LFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2058 bits (5333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1472 (67%), Positives = 1185/1472 (80%), Gaps = 82/1472 (5%)
Query: 1 MEGDITYRPTSCLSPSAST-WRSTSEGTFPRSPK-EEDDDEEALKRAALENLPTYNSPFR 58
MEG YR + L ++ST WR++ F RS + EED+DEEALK AALE LPTYN +
Sbjct: 1 MEGSDIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLRK 60
Query: 59 KMITNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEV 118
++T S G A E D ++ LG Q RQKL+D+L+ DNE LLKL++R D VGID+P +
Sbjct: 61 GLLTTSRGVANEID-ITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTI 119
Query: 119 EVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHL 178
EVRYE+LNVEAEA++ S+ALPTF NF TN++E + SL IL +KKH+
Sbjct: 120 EVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFF------------TSLHILSGKKKHV 167
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
TIL+DVSGII+P M LLLGPPSSGKTTLLLAL+GKLD +LKVSGRV YNGH M+EF PQ
Sbjct: 168 TILRDVSGIIKPRRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQ 227
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R AAYISQHD HIGEMTVRETLAFSARCQGVG+R+D+L+EL +RE EA IKPDPDIDV+M
Sbjct: 228 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYM 287
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALAL 353
KAAAT GQEA+++TDY LK+LGLDICADT++GDEM+RGISGGQ++RVTTG PA AL
Sbjct: 288 KAAATGGQEASLVTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANAL 347
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
FMDEIS GLDSSTTFQIV S+RQ +HILNGTAVISLLQPAPETY+LFDDI+L+SDG IVY
Sbjct: 348 FMDEISTGLDSSTTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVY 407
Query: 414 LGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAF 473
GPRE VL+FFE +GF+CPERKGVADFLQEVTSRKDQ+QYW H++ YRFVTV EF EAF
Sbjct: 408 QGPREYVLEFFEYVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAF 467
Query: 474 QSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIF 533
QSFHVG+++ EL TPFDKSKSHPAAL+ K+YGV KKELLKAN SRE+LLMKRNSFVYIF
Sbjct: 468 QSFHVGRRIGEELATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIF 527
Query: 534 KLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPV 593
KL QL+ +A+++M++F RT+M ++S+NDGG+Y GA FFAV++ MFNG+++ISMTI KLP+
Sbjct: 528 KLFQLTILAILTMTMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPI 587
Query: 594 FYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLF 653
FYKQRDL FYP+W+YA+P+WI+KIPI+F+E A WVFLTYYVIGFDPNVGR KQYL+LL
Sbjct: 588 FYKQRDLLFYPSWAYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLL 647
Query: 654 VNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMM 713
+NQM++ LFR I A GRNMIVA +FGSFALL+LFALGGFVLSR+DI WWIWGYW SP+M
Sbjct: 648 INQMSSGLFRAIAALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLM 707
Query: 714 YAQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNV 773
Y QNAIV NEFLG SW FT NSN++LG+Q L+SRGFF HAYWYW+G+GA+IGF+++FN+
Sbjct: 708 YGQNAIVVNEFLGDSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNI 767
Query: 774 GFTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWE 833
+TL+LT+LN ++ P+ I +ESES T G +S +G I
Sbjct: 768 IYTLALTYLNPYDTPQTTITEESES----GMTNGIAES---------------AGRAIAV 808
Query: 834 RSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV 893
SSS +K+GM+LPFEP+S+TFD++VYSVDMP EMK QGV ED+LV
Sbjct: 809 MSSSHK--------------KKRGMILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLV 854
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I +SGY K+QETF RI
Sbjct: 855 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARI 914
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
SGYCEQNDIHSP VTVYESL+YSAWLRLP EV++ TRKMFIEE+MELVELNPLR SLVGL
Sbjct: 915 SGYCEQNDIHSPHVTVYESLVYSAWLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGL 974
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVC
Sbjct: 975 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1034
Query: 1074 TIHQPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATW 1105
TIHQPSIDIFE+FD E+I GV KIKDG NPATW
Sbjct: 1035 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATW 1094
Query: 1106 MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQ 1165
MLEVT +QEL LGVDFH IY+ S L RRNK LI EL P PGSKD++FPTQY +S +Q
Sbjct: 1095 MLEVTTPAQELNLGVDFHEIYRNSGLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQ 1154
Query: 1166 FMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTA 1225
+ACLWKQHWSYWRNPPY AVRFL TT A+ FGTMFWD+G K +DLFNAMGSMY A
Sbjct: 1155 CLACLWKQHWSYWRNPPYTAVRFLSTTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNA 1214
Query: 1226 VFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIV 1285
V FVG Q +SVQPVVA+ER VFYRE+ AGMYS +PYA AQV+IE+PY+FV + Y VIV
Sbjct: 1215 VLFVGVQNSASVQPVVAIERTVFYRERAAGMYSALPYALAQVIIELPYVFVQATSYSVIV 1274
Query: 1286 YAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSG 1345
YAM+GFEWT KFFWY+FFM+FTL YFTFYGMMTVA+TPNHH+A++V++ FYG+WN+FSG
Sbjct: 1275 YAMMGFEWTLQKFFWYVFFMYFTLCYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSG 1334
Query: 1346 FVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGE-TVKQFVRNYFDFKHE 1404
FVI RP IP WWRWYYWA PVAWT+YGL ASQFGD+ + M++ +V++F+R++ KH+
Sbjct: 1335 FVIARPSIPVWWRWYYWACPVAWTIYGLVASQFGDITNVMKSENMSVQEFIRSHLGIKHD 1394
Query: 1405 FLGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
F+GV A++V+ FAVLF ++FA IK FNFQ R
Sbjct: 1395 FVGVSAIMVSGFAVLFVIIFAVSIKAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2053 bits (5319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1486 (69%), Positives = 1196/1486 (80%), Gaps = 70/1486 (4%)
Query: 3 GDITYRPTSCLSPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMIT 62
G+I S S+S WR++ E F RS ++EDD EEALK AALE LPTYN + ++
Sbjct: 4 GEIYRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDD-EEALKWAALEKLPTYNRMRKGLLM 62
Query: 63 NSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRY 122
S+GEA+E D + LG Q ++ L+++LV+ DNE FLLKLR+R D VGIDLPE+EVR+
Sbjct: 63 GSAGEASEVD-IHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 123 ENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILK 182
E+L ++AEA + S+ALP+F N N IE I LN+L+ILP+RKK TIL
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDI------------LNTLRILPSRKKKXTILH 169
Query: 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA 242
DVSGII+P MTLLLGPPSSGKTTLLLAL+GKLDSSLKV+G+VTYNGH M+EF PQR A
Sbjct: 170 DVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTAT 229
Query: 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK--- 299
YISQHD HIGEMTVRETLAFSARCQGVG R+DML EL +RE A IKPDPDIDVFMK
Sbjct: 230 YISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQN 289
Query: 300 --------------AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV 345
A ATEGQ+ NV+TDY LK+LGL++CADTLVGD+MIRGISGGQ++RV
Sbjct: 290 LLSLEFLKVLIGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRV 349
Query: 346 TTG-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400
TTG P+ ALFMDEIS GLDSSTT+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLF
Sbjct: 350 TTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLF 409
Query: 401 DDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMR 460
DDIILLSD IVY GPRE VLDFFESMGF+CPERKGVADFLQEVTSRKDQQQYWA K+
Sbjct: 410 DDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEP 469
Query: 461 YRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISRE 520
Y FVTV+EF EAFQSFH+G+KL EL TPFDK+KSHPAAL ++YGV KKELL A ISRE
Sbjct: 470 YSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISRE 529
Query: 521 FLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNG 580
+LLMKRNSFVYIFKLTQL +A +SM++F RT+M K+S +DG IY GA FF V+M MFNG
Sbjct: 530 YLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNG 589
Query: 581 MSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPN 640
MS+++MTIAKLPVFYKQR L FYPAW+YALP+WI+KIPI+F+EVA WVF++YYVIGFDPN
Sbjct: 590 MSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPN 649
Query: 641 VGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDIN 700
VGR FKQYLLL+ VNQMA+ALFRFI AAGRNMIVA +FGSF+LL+LFALGGFVLSR+++
Sbjct: 650 VGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVK 709
Query: 701 KWWIWGYWCSPMMYAQNAIVANEFLGHSWRK-FTTNSNESLGVQALKSRGFFPHAYWYWL 759
KWWIWGYW SP+MYAQNAIV NEFLG SW K +T+S ESLGV LKSRGFF AYWYW+
Sbjct: 710 KWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWI 769
Query: 760 GLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSS 819
G GA++GF+LVFN +T++LT+LN FEKP+AVI +ESE +++TGG ++ S+ S
Sbjct: 770 GAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGSI 825
Query: 820 LRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMP 879
+T S E + I SS SSSV A+ KKGMVLPF+P S+TF+++ YSVDMP
Sbjct: 826 DQTASTERREEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMP 885
Query: 880 QEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIT 939
+EMK QGV ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I
Sbjct: 886 EEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIN 945
Query: 940 ISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
ISGY KKQETF RI GYCEQNDIHSP VT++ESLLYSAWLRLP +VDS+TRKMFIEE+ME
Sbjct: 946 ISGYPKKQETFARIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVME 1005
Query: 1000 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
LVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 1006 LVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1065
Query: 1060 TVKNTVETGRTVVCTIHQPSIDIFESFD----------------------------EAIP 1091
TV+NTV+TGRTVVCTIHQPSIDIFE+FD E I
Sbjct: 1066 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIE 1125
Query: 1092 GVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKD 1151
GV KIK G NPATWMLEVT +QE LGVDF IYK SDLYRRNK LI+ELS+P PGSKD
Sbjct: 1126 GVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKD 1185
Query: 1152 IYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKR 1211
+YFPTQYS+SFF Q MACLWKQ SYWRNPPY AVRF FTT IAL FGTMFWD+GTK K+
Sbjct: 1186 LYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKK 1245
Query: 1212 NRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEI 1271
+DL NAMGSMY AV F+G Q SSVQPVVAVER VFYRE+ AGMYS MPYAFAQ ++EI
Sbjct: 1246 QQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEI 1305
Query: 1272 PYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAI 1331
PY+F +VVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMM VA TPN HIAAI
Sbjct: 1306 PYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAI 1365
Query: 1332 VSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMEN-GET 1390
V+ FYGLWN+FSGF++PR RIP WWRWYYWA PVAWT+YGL SQFGD++D+ E+ G+T
Sbjct: 1366 VAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDT 1425
Query: 1391 VKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
V+Q++ +YF F+H+FLGVVA V+ F +LF +FA IK FNFQ R
Sbjct: 1426 VEQYLNDYFGFEHDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2052 bits (5316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1450 (68%), Positives = 1161/1450 (80%), Gaps = 78/1450 (5%)
Query: 28 FPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVSTLGPQARQKLID 87
F S +EEDD EEALK AALE LPTY+ + ++ ++S DV +LG R+ L++
Sbjct: 31 FSMSSREEDD-EEALKWAALERLPTYDRLRKGILFSASRNGANEIDVGSLGFHERKLLLE 89
Query: 88 KLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTFTNFFTN 147
+L+R DNE FLLKL++R D VGI+LP +EVR+ENLN+EAEAF+ S+ALPTF NF N
Sbjct: 90 RLLRVVEEDNEEFLLKLKNRIDRVGIELPTIEVRFENLNIEAEAFVGSRALPTFVNFSIN 149
Query: 148 IIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTL 207
+ E G LNSL ILP+RKK LTILKDVSG+I+P MTLLLGPPSSGKTTL
Sbjct: 150 LFE------------GFLNSLHILPSRKKQLTILKDVSGVIKPSRMTLLLGPPSSGKTTL 197
Query: 208 LLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQ 267
LLALAGKLD +LK SG VTYNGH M+EF PQ AAYISQHD HIGEMTVRETL+FS RCQ
Sbjct: 198 LLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQ 257
Query: 268 GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327
GVG+R DML EL +RE A IKPDPDIDVFMKA ATEGQE NV+TDY LK+LGL++CADT
Sbjct: 258 GVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADT 317
Query: 328 LVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382
LVGDEM+RGISGGQ++RVTTG PA ALFMDEIS GLDSSTT+QIVNS++Q IHIL+
Sbjct: 318 LVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILD 377
Query: 383 GTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442
GTAVISLLQPAPETYDLFDDIILLSDG IVY GPRE VL+FFE MGFKCPERKGVADFLQ
Sbjct: 378 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQ 437
Query: 443 EVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSHPAALSM 502
EVTS+ DQ+QYW K+ Y FVTVQEF EAFQS+ VGQ + EL TPFDKSKSHPAAL+
Sbjct: 438 EVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAA 497
Query: 503 KEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDG 562
++YGV K ELLKA +RE+LLMKRNSFVYIFKLTQL +A++SM+LF RT+M ++ + D
Sbjct: 498 RKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDA 557
Query: 563 GIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFL 622
G+Y+GA FF+++ MFNGMS++SMTIAKLPVFYKQRDL+FYP W+YALP WI+KIPI+F
Sbjct: 558 GVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFF 617
Query: 623 EVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFA 682
EV WVF+TYYVIGFDPNV R FKQY LLL VNQMA+ LFRFI A GRNMIVA +FGSFA
Sbjct: 618 EVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFA 677
Query: 683 LLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKFTTN--SNESL 740
LL +FALGG VLSRDDI KWW WGYW SPMMY QNA+VANEFLG SW N S +SL
Sbjct: 678 LLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSL 737
Query: 741 GVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESESNE 800
GVQ +KSRGFFPHAYWYW+G+GA+ GF ++FN+ FTL+LT LN +EKP AVI DE E
Sbjct: 738 GVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDEP---E 794
Query: 801 KDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIR-----NLIRK 855
+ +RTGG +Q S +GSS ++TE V IR N +K
Sbjct: 795 RSDRTGGAIQLSQNGSS---------------------HRTITENGVGIRMTDEANQNKK 833
Query: 856 KGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSG 915
KGMVLPFEPHS+TF++V+YSVDMPQEMK QG+ +DKLVLL GVSGAF+PGVLTALMGVSG
Sbjct: 834 KGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSG 893
Query: 916 AGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975
AGKTTLMDVLAGRKTGGYI G I ISGY KKQ+TF RISGYCEQNDIHSP VTVYESL+Y
Sbjct: 894 AGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIY 953
Query: 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1035
SAWLRL PEVD ETRKMF+ E+MELVELNPLRQ+LVGLPGV+GLSTEQRKRLTI+VELVA
Sbjct: 954 SAWLRLAPEVDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVA 1013
Query: 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD-------- 1087
NPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSID+FE+FD
Sbjct: 1014 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRG 1073
Query: 1088 --------------------EAIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYK 1127
E I G K+KDG NPATWMLEVT+ +QEL+LGVDF IYK
Sbjct: 1074 GEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYK 1133
Query: 1128 LSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVR 1187
S+LYRRNKA+I+ELS VPGSKD+YFPTQYS+SF Q +ACLWKQ SYWRNPPY AVR
Sbjct: 1134 NSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVR 1193
Query: 1188 FLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAV 1247
FLFTT IAL FGTMFWD+G+K + +D+FN+ GSMY AV F+G Q +SVQPVVA+ER V
Sbjct: 1194 FLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTV 1253
Query: 1248 FYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFF 1307
FYRE+ AGMYS +PYA+AQV++EIPY+F +VVYG++ Y+MIGFEWTAAKFFWY+FFM+F
Sbjct: 1254 FYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYF 1313
Query: 1308 TLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVA 1367
TL+YFT+YGMM VA+TPNHHIA++VS+ FYG+WN+FSGF++PR R+P WWRWYYW PV+
Sbjct: 1314 TLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVS 1373
Query: 1368 WTMYGLFASQFGDVEDKMENG-ETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAA 1426
WT+YGL SQF D++D E G +TV+ FVR Y+ +H+FLGVVA V+ VLF +FA
Sbjct: 1374 WTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAV 1433
Query: 1427 GIKRFNFQNR 1436
IK FNFQ R
Sbjct: 1434 SIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2045 bits (5298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1032/1469 (70%), Positives = 1192/1469 (81%), Gaps = 56/1469 (3%)
Query: 3 GDITYRPTSCLSPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMIT 62
G+I S S+S WR++ E RS ++EDD EEALK AALE LPTYN + ++
Sbjct: 4 GEIYRAGGSLRKDSSSIWRNSGEEVSSRSSRDEDD-EEALKWAALEKLPTYNRMRKGLLM 62
Query: 63 NSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRY 122
S+GEA+E D + LG Q ++ L+++LV+ DNE FLLKLR+R D VGIDLPE+EVR+
Sbjct: 63 GSAGEASEVD-IHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 123 ENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILK 182
E+L ++AEA + S+ALP+F N N IE I LN+L+ILP+RKK TIL
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDI------------LNTLRILPSRKKKFTILH 169
Query: 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA 242
DVSGII+P MTLLLGPPSSGKTTLLLAL+GKLDSSLKV+G+VTYNGH M+EF PQR A
Sbjct: 170 DVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTAT 229
Query: 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAA 302
YISQHD HIGEMTVRETLAFSARCQGVG R+DML EL +RE A IKPDPDIDVFMKAAA
Sbjct: 230 YISQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAA 289
Query: 303 TEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDE 357
TEGQ+ NV+TDY LK+LGL++CADTLVGD+MIRGISGGQ++RVTTG P+ ALFMDE
Sbjct: 290 TEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDE 349
Query: 358 ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPR 417
IS GLDSSTT+QIVNS+RQ IHILNGTA+ISLLQPAPETYDLFDDIILLSD IVY GPR
Sbjct: 350 ISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPR 409
Query: 418 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFH 477
E VLDFFESMGF+CPERKGVADFLQEVTSRKDQQQYWA K+ Y FVTV++F EAFQSFH
Sbjct: 410 EDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFH 469
Query: 478 VGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQ 537
G+K+ EL TPFDK+KSHPAAL ++YGV KKELL A ISRE+ LMKRNSFVYI +LTQ
Sbjct: 470 SGRKVGDELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQ 529
Query: 538 LSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQ 597
L +A +SM++F RT+M K+S +DG IY+GA FF V+M MFNGMS+++MTIAKLPVFYKQ
Sbjct: 530 LIIMAAISMTIFLRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQ 589
Query: 598 RDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQM 657
R L FYPAW+YAL +WI+KIPI+F+EVA WVF++YYVIGFDPNVGR FKQYLLL+ VNQM
Sbjct: 590 RGLLFYPAWAYALSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQM 649
Query: 658 ATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQN 717
A+ALFRFI AAGRNMIVA +FGSF+LL+LFALGGFVLSR+++ KWWIWGYW SP+MYAQN
Sbjct: 650 ASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQN 709
Query: 718 AIVANEFLGHSWRK-FTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFT 776
AIV NEFLG SW K +TNS ESLGV LKSRGFF AYWYW+G GA++GF+LVFN +T
Sbjct: 710 AIVVNEFLGKSWSKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYT 769
Query: 777 LSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSS 836
++LT+LN FEKP+AVI +ESE +++TGG ++ S+ S +T S D I S
Sbjct: 770 VALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQT---ASTDEIGRSIS 822
Query: 837 SMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLN 896
S SSSV A+ K+GMVLPF+P S+TFD++ YSVDMP+EMK QGV ED+L LL
Sbjct: 823 STSSSVRAEAIAEARRNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLK 882
Query: 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGY 956
GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGY KKQETFTRISGY
Sbjct: 883 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGY 942
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
CEQNDIHSP VT++ESLLYSAWLRLP +VDS+TRKMFIE++MELVEL PL+ SLVGLPGV
Sbjct: 943 CEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGV 1002
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIH
Sbjct: 1003 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1062
Query: 1077 QPSIDIFESFD----------------------------EAIPGVQKIKDGCNPATWMLE 1108
QPSIDIFE+FD E I GV KIK G NPATWMLE
Sbjct: 1063 QPSIDIFEAFDELLLLKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLE 1122
Query: 1109 VTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMA 1168
VT +QE LGVDF IYK S+LYRRNK LI+ELS+P PGSKD+YFPTQYS+SFF Q MA
Sbjct: 1123 VTTSAQEFLLGVDFTEIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMA 1182
Query: 1169 CLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFF 1228
CLWKQ SYWRNPPY AVRF FTT IAL FGTMFWD+GTK + +DL NAMGSMY AV F
Sbjct: 1183 CLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLF 1242
Query: 1229 VGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAM 1288
+G Q SSVQPVVAVER VFYRE+ AG+YS MPYAFA ++EIPY+F +VVYGVIVYAM
Sbjct: 1243 LGVQNSSSVQPVVAVERTVFYRERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAM 1302
Query: 1289 IGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVI 1348
IGFEWTAAKFFWYLFFMFFTLLYFTFYGMM VA TPN HIAAIV+ FYGLWN+FSGF++
Sbjct: 1303 IGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIV 1362
Query: 1349 PRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMEN-GETVKQFVRNYFDFKHEFLG 1407
PR RIP WWRWYYWA PVAWT+YGL SQFGD++D+ E+ G+TV+Q++ +YF F+H+FLG
Sbjct: 1363 PRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLG 1422
Query: 1408 VVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
VVA V+ F VLF +FA IK FNFQ R
Sbjct: 1423 VVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2043 bits (5294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1006/1466 (68%), Positives = 1170/1466 (79%), Gaps = 77/1466 (5%)
Query: 6 TYRPTSCLSPSAST-WRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNS 64
TYR + L + S+ WRS+ F RS ++EDD EEALK AALE LPTYN R ++ S
Sbjct: 6 TYRASGSLRRNGSSIWRSSGADVFSRSSRDEDD-EEALKWAALEKLPTYNRLRRGLLMGS 64
Query: 65 SGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYEN 124
GEA+E D + LG Q ++ L+++LV+ DNE FLLKL++R D VGID+PE+EVR+E+
Sbjct: 65 EGEASEID-IHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEH 123
Query: 125 LNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDV 184
L ++AEAF+ S+ALP+F NF N +L+G LN+++ILP++K+ TIL DV
Sbjct: 124 LTIDAEAFVGSRALPSFHNFIFN------------KLEGILNAVRILPSKKRKFTILNDV 171
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYI 244
SGII+P +TLLLGPPSSGKTTLLLALAGKLD +LKV GRVTYNGH M+EF PQR AAYI
Sbjct: 172 SGIIKPRRLTLLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYI 231
Query: 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATE 304
SQHD HIGEMTVRETLAFSARCQGVG R+DML EL +RE A IKPDPD+DVFMKAAATE
Sbjct: 232 SQHDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATE 291
Query: 305 GQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEIS 359
GQ+ NV+TDY LK+LGLDICADT+VGDEMIRGISGGQ++RVTTG P+ ALFMDEIS
Sbjct: 292 GQKENVVTDYTLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEIS 351
Query: 360 NGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPREL 419
GLDSSTTFQI+NS++Q IHILNGTAVISLLQPAPETY+LFDDIILLSD IVY GPRE
Sbjct: 352 TGLDSSTTFQIINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPRED 411
Query: 420 VLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVG 479
VL+FFES+GFKCPERKG ADFLQEVTSRKDQ QYWA K++ Y FVTV+EF EAFQSFH+G
Sbjct: 412 VLEFFESIGFKCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIG 471
Query: 480 QKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLS 539
+K+ EL +PFD++KSHPAAL+ K+YGV KKELL AN+SRE+LLMKRNSFVYIFKLTQL+
Sbjct: 472 RKVADELASPFDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLA 531
Query: 540 TVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRD 599
VA+++M+LF RT+M K+S DG IY GA FF V+M MFNGM++++MTIAKLPVFYKQRD
Sbjct: 532 VVAVIAMTLFLRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRD 591
Query: 600 LRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMAT 659
FYPAW+YALP W++KIPI+F+EVA WVF+TYYVIGFDPNV R F+QYLLLL VNQMA+
Sbjct: 592 FLFYPAWAYALPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMAS 651
Query: 660 ALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAI 719
LFRFI AAGRNMIVA +FG+FA+LML ALGGF+LS D++ KWWIWGYW SP+MYAQNAI
Sbjct: 652 GLFRFIAAAGRNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAI 711
Query: 720 VANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSL 779
V NEFLG SW K TNS ESLG+ LKSRGFF A+WYW+G GA++GF+ VFN +TL L
Sbjct: 712 VVNEFLGKSWSKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCL 771
Query: 780 TFLNKFEKPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMS 839
+LN FEKP+AVI +ES++ ++ +GD M
Sbjct: 772 NYLNPFEKPQAVITEESDN-----------------------AKTATTGDETHTWGEHMV 808
Query: 840 SSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVS 899
++ E N +KKGMVLPF+PHS+TFD++ YSVDMP+EMK QG ED+L LL GVS
Sbjct: 809 EAIAEG-----NHNKKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVS 863
Query: 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQ 959
GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+ISGY KKQETF RISGYCEQ
Sbjct: 864 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQ 923
Query: 960 NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019
NDIHSP VTV+ESLLYSAWLRLP +V+SETRKMFIEE+MELVEL PLR +LVGLPGV+GL
Sbjct: 924 NDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGL 983
Query: 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPS
Sbjct: 984 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1043
Query: 1080 IDIFESFD----------------------------EAIPGVQKIKDGCNPATWMLEVTA 1111
IDIFE+FD E I GV KIKDG NPATWMLEVT
Sbjct: 1044 IDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTT 1103
Query: 1112 RSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLW 1171
+QE LGVDF IYK SDLYRRNK LI+ELS+P PG+KD+YF TQYS+ FF QF+ACLW
Sbjct: 1104 GAQEGTLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLW 1163
Query: 1172 KQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGA 1231
KQ WSYWRNPPY AVRFLFTT IAL FG +FWD+GT+ R +DL NAMGSMY AV F+G
Sbjct: 1164 KQRWSYWRNPPYTAVRFLFTTFIALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGV 1223
Query: 1232 QYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGF 1291
Q SVQPV+ VER VFYRE+ AGMYS +PYAF Q ++EIPY+F +VVYGVIVY MIGF
Sbjct: 1224 QNAQSVQPVIVVERTVFYRERAAGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGF 1283
Query: 1292 EWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRP 1351
EWTA KFFWYLFFMF TLLYFTFYGMM VA TPN HIA+I++ FY LWN+FSGF++PR
Sbjct: 1284 EWTATKFFWYLFFMFCTLLYFTFYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRN 1343
Query: 1352 RIPEWWRWYYWANPVAWTMYGLFASQFGDVEDK-MENGETVKQFVRNYFDFKHEFLGVVA 1410
RIP WWRWY W PVAWT+YGL ASQFGD++ +EN +TVKQF+ +YF FKH+FLGVVA
Sbjct: 1344 RIPVWWRWYCWICPVAWTLYGLVASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVA 1403
Query: 1411 VVVAAFAVLFGVLFAAGIKRFNFQNR 1436
VV F VLF +FA IK FNFQ R
Sbjct: 1404 AVVVGFVVLFLFIFAYAIKAFNFQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2041 bits (5287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1471 (67%), Positives = 1173/1471 (79%), Gaps = 55/1471 (3%)
Query: 1 MEGDITYRPTSCLSPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKM 60
M+ YR +S S+S WR+++ F RS ++ DDDEEALK A++E LPTY R+
Sbjct: 1 MDSGEIYRVSSARINSSSIWRNSAMEVFSRSSRD-DDDEEALKWASIERLPTYLR-VRRG 58
Query: 61 ITNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEV 120
I N GE+ DV LG R+ ++++LV+ DNE FLLKL++R + VG+DLP +EV
Sbjct: 59 ILNLDGESAREIDVQNLGLLERRNILERLVKIAEDDNERFLLKLKNRMERVGLDLPAIEV 118
Query: 121 RYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTI 180
R+E+L VEAEA A +ALPT NF N++E G L+ I+P RKK L+I
Sbjct: 119 RFEHLEVEAEAHTAGRALPTMFNFSLNMLE------------GFLSYFHIIPNRKKQLSI 166
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L DVSGII+PG MTLLLGPPSSGKTTLL LAGKL LK SGRVTYNGH M+EF PQR
Sbjct: 167 LHDVSGIIKPGRMTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRT 226
Query: 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKA 300
+AYISQ D HIGEMTVRETL+FSARCQGVG R+DMLTEL +RE A IKPDPD+D+ MKA
Sbjct: 227 SAYISQQDLHIGEMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKA 286
Query: 301 AATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFM 355
AA GQE NV+TDY LK+LGL+ICADT+VGDEM RGISGGQK+RVTTG P+ ALFM
Sbjct: 287 AALGGQETNVVTDYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFM 346
Query: 356 DEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415
DEIS GLDSSTT+QIVNS+RQ IHILNGTA+ISLLQPAPETY+LFDDIIL+SDG +VY G
Sbjct: 347 DEISTGLDSSTTYQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQG 406
Query: 416 PRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQS 475
PRE VL+FF+ MGF CP+RKGVADFLQEVTSRKDQ+QYW ++ YRFV+V+EF EAFQS
Sbjct: 407 PRENVLEFFQHMGFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQS 466
Query: 476 FHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKL 535
FHVG+KL EL TPFDKSKSHPAAL+ ++YG KKELLKA ISRE LLMKRNSFVYIFKL
Sbjct: 467 FHVGKKLGDELATPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKL 526
Query: 536 TQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFY 595
QL +A V+M+LFFRT+M + +V+DG +Y+GA FFA+++TMFNG S++++TI KLPVFY
Sbjct: 527 IQLILMAFVTMTLFFRTEMHRRTVDDGSVYMGALFFAIIITMFNGFSELALTILKLPVFY 586
Query: 596 KQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVN 655
KQRD F+P W+Y++P WI+KIPI+F+EV WV +TYYV+GFDPN GRFFK +L+LLFVN
Sbjct: 587 KQRDFLFFPPWAYSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVN 646
Query: 656 QMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYA 715
QMA+ALFR IGA GRN+IVA +FGSFALL + LGGFVL+RDD++ WWIWGYW SPMMYA
Sbjct: 647 QMASALFRLIGALGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYA 706
Query: 716 QNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGF 775
QN I NEFLGH WR NSNESLGV LKSRG FP A WYW+G+GA IG++L+FN F
Sbjct: 707 QNGIAVNEFLGHKWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLF 766
Query: 776 TLSLTFLNKFEKPRAVIFDESESNE--KDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWE 833
T++L +L+ FEKP+A++ E+ +++ K ++ L+ S+ G SSS RT + S
Sbjct: 767 TIALQYLDPFEKPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQIS------ 820
Query: 834 RSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV 893
SS SS+ + E N +K+GMVLPFEPHS+TFDE+ Y+VDMPQEMK QGV ED+L
Sbjct: 821 LSSRTSSARVGSFSEEANQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLE 880
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+ITISGY KKQETF RI
Sbjct: 881 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARI 940
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
+GYCEQ DIHSP VTVYESL+YSAWLRLPP+VDS TRKMF+EE+MEL+ELNPLR ++VGL
Sbjct: 941 AGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGL 1000
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVC
Sbjct: 1001 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1060
Query: 1074 TIHQPSIDIFESFDE----------------------------AIPGVQKIKDGCNPATW 1105
TIHQPSIDIF++FDE +I GV KIKDG NPATW
Sbjct: 1061 TIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATW 1120
Query: 1106 MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQ 1165
MLE+T +QE LGV+F+ +YK S+LYRRNKALI+ELS P S ++YFPT+YS+SFF+Q
Sbjct: 1121 MLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQ 1180
Query: 1166 FMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTA 1225
+ACLWKQH SYWRNPPY+AVRFLFTT IAL FGT+FWD+G+K +DLFNAMGSMY A
Sbjct: 1181 CIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAA 1240
Query: 1226 VFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIV 1285
V F+G Q +SVQPVVA+ER VFYRE+ AGMYS +PYAF QV+IE+PY+F+ +VVYGVIV
Sbjct: 1241 VLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIV 1300
Query: 1286 YAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSG 1345
Y MIGFEWTAAKFFWY+FFM+FTLLYFTFYGMMTVA+TPNH+IAAIVS+ FYG WN+FSG
Sbjct: 1301 YGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSG 1360
Query: 1346 FVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKMENGETVKQFVRNYFDFKHEF 1405
F++PR RIP WWRWYYW PVAWT+YGL SQFGD+ D M++ +TV +FV NYF +K++F
Sbjct: 1361 FIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDF 1420
Query: 1406 LGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436
LGVVA V VLFG +FA IK FNFQ R
Sbjct: 1421 LGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2039 bits (5282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1454 (68%), Positives = 1162/1454 (79%), Gaps = 84/1454 (5%)
Query: 17 ASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVST 76
+S WRS+ F RS ++EDD EEALK AALE LPTYN R ++ S GEA+E D +
Sbjct: 239 SSIWRSSGADVFSRSSRDEDD-EEALKWAALEKLPTYNRLRRGLLMGSEGEASEID-IHN 296
Query: 77 LGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASK 136
LG Q ++ L+++LV+ DNE FLLKL++R D VGID+PE+EVR+E+L ++AEAF+ S+
Sbjct: 297 LGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDAEAFVGSR 356
Query: 137 ALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLL 196
ALP+F NF N +L+G LN+++ILP++K+ TIL DVSGII+P +TLL
Sbjct: 357 ALPSFHNFIFN------------KLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLL 404
Query: 197 LGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256
LGPPSSGKTTLLLALAGKLD +LKV GRVTYNGH M+EF PQR AAYISQHD HIGEMTV
Sbjct: 405 LGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTV 464
Query: 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYL 316
RETLAFSARCQGVG R+DML EL +RE A IKPDPD+DVFMKAAATEGQ+ NV+TDY L
Sbjct: 465 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 524
Query: 317 KVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIV 371
K+LGLDICADT+VGDEMIRGISGGQ++RVTTG P+ ALFMDEIS GLDSSTTFQI+
Sbjct: 525 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQII 584
Query: 372 NSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKC 431
NS++Q IHILNGTAVISLLQPAPETY+LFDDIILLSD IVY GPRE VL+FFES+GFKC
Sbjct: 585 NSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKC 644
Query: 432 PERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFD 491
PERKG ADFLQEVTSRKDQ QYWA K++ Y FVTV+EF EAFQSFH+G+K+ EL +PFD
Sbjct: 645 PERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFD 704
Query: 492 KSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFR 551
++KSHPAAL+ K+YGV KKELL AN+SRE+LLMKRNSFVYIFKLTQL+ VA+++M+LF R
Sbjct: 705 RAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLR 764
Query: 552 TKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALP 611
T+M K+S DG IY GA FF V+M MFNGM++++MTIAKLPVFYKQRD FYPAW+YALP
Sbjct: 765 TEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALP 824
Query: 612 AWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRN 671
W++KIPI+F+EVA WVF+TYYVIGFDPNV R F+QYLLLL VNQMA+ LFRFI AAGRN
Sbjct: 825 TWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRN 884
Query: 672 MIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRK 731
MIVA +FG+FA+LML ALGGF+LS D++ KWWIWGYW SP+MYAQNAIV NEFLG SW K
Sbjct: 885 MIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSK 944
Query: 732 FTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAV 791
TNS ESLG+ LKSRGFF A+WYW+G GA++GF+ VFN +TL L +LN FEKP+AV
Sbjct: 945 NVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAV 1004
Query: 792 IFDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRN 851
I +ES+ N K T +++ G+ +
Sbjct: 1005 ITEESD-NAKTATTEHMVEAIAEGNHN--------------------------------- 1030
Query: 852 LIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALM 911
+KKGMVLPF+PHS+TFD++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTALM
Sbjct: 1031 --KKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALM 1088
Query: 912 GVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971
GVSGAGKTTLMDVLAGRKTGGYI G+I+ISGY KKQETF RISGYCEQNDIHSP VTV+E
Sbjct: 1089 GVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHE 1148
Query: 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1031
SLLYSAWLRLP +V+SETRKMFIEE+MELVEL PLR +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 1149 SLLYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAV 1208
Query: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD---- 1087
ELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFE+FD
Sbjct: 1209 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1268
Query: 1088 ------------------------EAIPGVQKIKDGCNPATWMLEVTARSQELALGVDFH 1123
E I GV KIKDG NPATWMLEVT +QE LGVDF
Sbjct: 1269 MKRGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFT 1328
Query: 1124 NIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPY 1183
IYK SDLYRRNK LI+ELS+P PG+KD+YF TQYS+ FF QF+ACLWKQ WSYWRNPPY
Sbjct: 1329 EIYKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPY 1388
Query: 1184 NAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAV 1243
AVRFLFTT IAL FG +FWD+GT+ R +DL NAMGSMY AV F+G Q SVQPV+ V
Sbjct: 1389 TAVRFLFTTFIALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVV 1448
Query: 1244 ERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLF 1303
ER VFYRE+ AGMYS +PYAF Q ++EIPY+F +VVYGVIVY MIGFEWTA KFFWYLF
Sbjct: 1449 ERTVFYRERAAGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLF 1508
Query: 1304 FMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWA 1363
FMF TLLYFTFYGMM VA TPN HIA+I++ FY LWN+FSGF++PR RIP WWRWY W
Sbjct: 1509 FMFCTLLYFTFYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWI 1568
Query: 1364 NPVAWTMYGLFASQFGDVEDK-MENGETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGV 1422
PVAWT+YGL ASQFGD++ +EN +TVKQF+ +YF FKH+FLGVVA VV F VLF
Sbjct: 1569 CPVAWTLYGLVASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLF 1628
Query: 1423 LFAAGIKRFNFQNR 1436
+FA IK FNFQ R
Sbjct: 1629 IFAYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.549 | 0.554 | 0.589 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.532 | 0.526 | 0.502 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.534 | 0.540 | 0.482 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.529 | 0.527 | 0.487 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.536 | 0.531 | 0.453 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.529 | 0.532 | 0.433 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.532 | 0.526 | 0.495 | 3.2e-305 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.527 | 0.515 | 0.477 | 2.8e-295 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.533 | 0.540 | 0.479 | 8.7e-292 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.529 | 0.538 | 0.453 | 5.2e-263 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2475 (876.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 477/809 (58%), Positives = 599/809 (74%)
Query: 1 MEGDITYRPTSCLSPSASTWRSTS-EGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRK 59
MEG ++ ++ + ++S W+ S F RS +EEDD EEAL+ AALE LPT++ +
Sbjct: 1 MEGTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDD-EEALRWAALEKLPTFDRLRKG 59
Query: 60 MITNS-SGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEV 118
++T S +G D+ LG Q +KL+++L++ ++E L KL+ R D VGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 119 EVRYENLNVEAEAFLASKALPXXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHL 178
EVR+++L VEAE + +ALP LN+L ++P RKK
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKF------------LNTLHLVPNRKKKF 167
Query: 179 TILKDVSGIIRPGSMTLLLGPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQ 238
TIL DVSGI++PG M LLLGPP K +GRVTYNGH M+EF PQ
Sbjct: 168 TILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQ 227
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R AAYI Q+D HIGEMTVRET A++AR QGVGSR+DMLTEL +RE EA IKPDPDID+FM
Sbjct: 228 RTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFM 287
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALAL 353
KA +T G++ NV+TDY LK+LGL++CADT+VGD+M+RGISGGQK+RVTTG P+ AL
Sbjct: 288 KAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRAL 347
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
FMDEIS GLDSSTT+QIVNS+R +HI NGTA+ISLLQPAPET++LFDDIIL+++G I+Y
Sbjct: 348 FMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIY 407
Query: 414 LGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAF 473
GPR+ V++FFE+MGFKCP RKGVADFLQEVTS+KDQ QYWA ++ YRF+ V+EF EAF
Sbjct: 408 EGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAF 467
Query: 474 QSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIF 533
QSFHVG+++ EL PFDK+KSHPAAL+ K+YGVG KEL+K + SRE+LLMKRNSFVY F
Sbjct: 468 QSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYF 527
Query: 534 KLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPV 593
K QL +A ++M+LFFRT+M K + DG +Y GA FF +MM MFNGMS++SMTIAKLPV
Sbjct: 528 KFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPV 587
Query: 594 FYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLF 653
FYKQRDL FYPAW Y+LP W++KIPISF+E A F+TYYVIGFDPNVGR FKQY+LL+
Sbjct: 588 FYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVL 647
Query: 654 VNQMATALFRFIGAAGRNMIVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMM 713
+NQMA+ALF+ + A GRNMIVA VLSRDDI KWWIWGYW SP+M
Sbjct: 648 MNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIM 707
Query: 714 YAQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNV 773
Y QNAI+ANEF GHSW + NS+E+LGV LKSRGF PHAYWYW+G GA++GF+++FN
Sbjct: 708 YGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNF 767
Query: 774 GFTLSLTFLNKFEKPRAVIFDESESNEKD 802
GFTL+LTFLN KP+AVI +E S+E +
Sbjct: 768 GFTLALTFLNSLGKPQAVIAEEPASDETE 796
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2039 (722.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 397/790 (50%), Positives = 539/790 (68%)
Query: 24 SEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMI--TNSSGEATEAD-DVSTLGPQ 80
++ F RS + E+DD E L+ AALE LPTY+ + M+ T +G+ D DV+ L P+
Sbjct: 42 TDDVFGRSDRREEDDVE-LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPK 100
Query: 81 ARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPX 140
++ L++ +++ DNE FL +LR+R D VGI++P++EVRYENL+VE + AS+ALP
Sbjct: 101 EKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPT 160
Query: 141 XXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPP 200
T ++ L +LP++K+ + ILKD+SGII+P MTLLLGPP
Sbjct: 161 LFN------------VTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPP 208
Query: 201 XXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260
++SGR+TY GH EF PQ+ AYISQHD H GEMTVRE+L
Sbjct: 209 SSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESL 268
Query: 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320
FS RC GVG+R+ +LTEL +RE EAGIKPDP+ID FMK+ A GQE +++TDY LK+LG
Sbjct: 269 DFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLG 328
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIR 375
LDICADTLVGD M RGISGGQ++R+TTG PA ALFMDEIS GLDSSTTFQI +R
Sbjct: 329 LDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMR 388
Query: 376 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERK 435
Q +HI + T VISLLQPAPET++LFDDIILLS+G IVY G R+ VL+FFE MGFKCPERK
Sbjct: 389 QLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERK 448
Query: 436 GVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKS 495
G+ADFLQEVTS+KDQ+QYW +E Y +V+V +F F SFH GQ+L +E R P+DK+K+
Sbjct: 449 GIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKT 508
Query: 496 HPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMP 555
HPAAL ++YG+ K+L KA RE+LLMKRNSFVY+FK Q++ +++++M+++FRT+M
Sbjct: 509 HPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMH 568
Query: 556 KDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIV 615
+V DG + GA FF+++ MFNGM++++ T+ +LPVF+KQRD FYP W++ALP +++
Sbjct: 569 VGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLL 628
Query: 616 KIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVA 675
KIP+S +E W+ LTYY IGF P+ RFF+Q L VNQMA +LFRF+GA GR ++A
Sbjct: 629 KIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIA 688
Query: 676 XXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSW---RKF 732
++S+DDI W W Y+ SPMMY Q A+V NEFL W
Sbjct: 689 NSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNND 748
Query: 733 TTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAV- 791
T + +++G LKSRGFF YW+W+ +GA++GF ++FN + ++L +LN +A
Sbjct: 749 TRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATT 808
Query: 792 IFDESESNEK 801
+ +E + K
Sbjct: 809 VVEEGKDKHK 818
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1978 (701.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 382/791 (48%), Positives = 528/791 (66%)
Query: 20 WRSTSEGTFPRSP--KEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVSTL 77
W S +E F RS K+E +DEE L+ AAL+ LPTY+ R + + GE E + L
Sbjct: 2 WNS-AENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQ-IGNL 59
Query: 78 GPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKA 137
++ L+D+LV D E F ++R RFDAV + P++EVR++NL VE+ + S+A
Sbjct: 60 EASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRA 119
Query: 138 LPXXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLL 197
LP +G L ++ ++ ++ LTIL +SG+IRP +TLLL
Sbjct: 120 LPTIPNFIINMA------------EGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLL 167
Query: 198 GPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257
GPP + SG++TYNG+++ E R +AY+SQ D H+ EMTVR
Sbjct: 168 GPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVR 227
Query: 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK 317
+TL F+ RCQGVG ++DML EL +RE AGI PD D+D+FMK+ A G E +++ +Y +K
Sbjct: 228 QTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMK 287
Query: 318 VLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVN 372
+LGLD CADTLVGDEMI+GISGGQK+R+TTG PA LFMDEISNGLDSSTT QI+
Sbjct: 288 ILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIM 347
Query: 373 SIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCP 432
+R + H L GT VISLLQP+PETY+LFDD+IL+S+G I+Y GPR+ VLDFF S+GF CP
Sbjct: 348 YMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCP 407
Query: 433 ERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDK 492
+RK VADFLQEVTS+KDQQQYW+ YR+V +F EAF+S+ G+KL +L PFDK
Sbjct: 408 DRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDK 467
Query: 493 SKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRT 552
+H AALS +YGV K ELLK N + + LMK+N+F+Y+FK QL VA+++M++F RT
Sbjct: 468 RFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRT 527
Query: 553 KMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPA 612
M ++++DG IY+G+ +F++++ +FNG +++ M +AKLPV YK RDL FYP+W+Y LP+
Sbjct: 528 TMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPS 587
Query: 613 WIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNM 672
W++ IP S +E A WV +TYY IG+DP RF +Q+LL ++QM+ LFR +G+ GR+M
Sbjct: 588 WLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHM 647
Query: 673 IVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKF 732
IVA ++SRD I WWIWGYW SP+MYAQNA NEFLGH+W+K
Sbjct: 648 IVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKT 707
Query: 733 TTN-SNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAV 791
N +++SLG+ LK R F YWYW+G+ A++G+ ++FN+ FTL L LN + K +AV
Sbjct: 708 AGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAV 767
Query: 792 IF-DESESNEK 801
+ +E + EK
Sbjct: 768 VSREELDEREK 778
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1955 (693.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 385/790 (48%), Positives = 516/790 (65%)
Query: 27 TFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGE--------ATEADDVSTLG 78
T R K ++DEEALK A++E LPTYN R + GE +A DV+ L
Sbjct: 36 TSSRRTKSVNEDEEALKWASIEKLPTYNR-LRTSLMPELGEDDVYGNQILNKAVDVTKLD 94
Query: 79 PQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKAL 138
+ RQK ID + + DNE L KLR+R D VGI LP VEVRY++L V+A+ + ++L
Sbjct: 95 GEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSL 154
Query: 139 PXXXXXXXXXXXXXXXLTTCKRL-KGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLL 197
P L + + + +L + I +K LTILKDVSGI++P MTLLL
Sbjct: 155 PSL-------------LNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLL 201
Query: 198 GPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257
GPP VSG VTYNG+ ++EF P + +AYISQ+D H+G MTV+
Sbjct: 202 GPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVK 261
Query: 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK 317
ETL FSARCQGVG+R+D+L EL +RE +AGI P+ D+D+FMKA+A +G +++++TDY LK
Sbjct: 262 ETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLK 321
Query: 318 VLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVN 372
+LGLDIC DT+VGD+M+RGISGGQK+RVTTG P LFMDEIS GLDSSTTFQIV
Sbjct: 322 ILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVK 381
Query: 373 SIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCP 432
++Q +H+ T +ISLLQPAPET+DLFDDIILLS+G IVY GPR+ +L+FFES GFKCP
Sbjct: 382 CLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCP 441
Query: 433 ERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDK 492
ERKG ADFLQEVTS+KDQ+QYW YR++ V EF +F+ FHVG KL+ EL P+DK
Sbjct: 442 ERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDK 501
Query: 493 SKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRT 552
SKSH AAL +Y + K ELLK+ +E++LMKRNSF Y+FK Q+ +A ++ +L+ RT
Sbjct: 502 SKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRT 561
Query: 553 KMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPA 612
+M + D IY+G+ FA+++ MFNG+++++MTI +LPVFYKQRDL F+P W+Y LP
Sbjct: 562 EMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPT 621
Query: 613 WIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNM 672
+++ IPIS E AW+ +TYY IG+ P+ RFFKQ+L++ + QMA +FRFI + R M
Sbjct: 622 FLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTM 681
Query: 673 IVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSW-RK 731
+A +L R +I WW W YW SP+ YA NAI NE W K
Sbjct: 682 TIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNK 741
Query: 732 FTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAV 791
+ NS LG L F WYW+G+G ++GF ++FN FTL+LT+L+ K +A+
Sbjct: 742 MSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAI 801
Query: 792 IFDESESNEK 801
+ E + K
Sbjct: 802 LPKEEDEEAK 811
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1751 (621.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 363/801 (45%), Positives = 497/801 (62%)
Query: 8 RPTSCLSPSASTWRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGE 67
R TS S+S + ++G + D E AL+ A +E LPT ++ +
Sbjct: 30 RHTSSFRSSSSIYEVENDGDV-----NDHDAEYALQWAEIERLPTVKRMRSTLLDDGDES 84
Query: 68 ATEAD----DVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYE 123
TE DV+ LG R +I+KL++ DN L K+R R D VG++LP +EVRYE
Sbjct: 85 MTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYE 144
Query: 124 NLNVEAEA-FLASKALPXXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILK 182
+L V AE + KALP T KR+ L L T + + I+
Sbjct: 145 SLKVVAECEVVEGKALPTLW-------------NTAKRVLSELVKLTGAKTHEAKINIIN 191
Query: 183 DVSGIIRPGSMTLLLGPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAA 242
DV+GII+PG +TLLLGPP K SG ++YNGH +DEF PQ+ +A
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSA 251
Query: 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAA 302
YISQ+D HI EMTVRET+ FSARCQGVGSR D++ E+ KRE E GI PD ++D +MKA +
Sbjct: 252 YISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAIS 311
Query: 303 TEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT-----GPALALFMDE 357
EG + ++ TDY LK+LGLDICA+ L+GD M RGISGGQK+R+TT GP ALFMDE
Sbjct: 312 VEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDE 371
Query: 358 ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPR 417
I+NGLDSST FQIV S++Q HI + T ++SLLQPAPE+YDLFDDI+L++ G IVY GPR
Sbjct: 372 ITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPR 431
Query: 418 ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFH 477
VL+FFE GF+CPERKGVADFLQEV S+KDQ QYW H+++ Y FV+V+ + F+
Sbjct: 432 GEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLS 491
Query: 478 VGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQ 537
+G+K+ L P+D+SKSH ALS Y + EL A ISRE+LLMKRN FVYIFK Q
Sbjct: 492 IGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQ 551
Query: 538 LSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQ 597
L A ++M++F RT+M D ++ G Y+ A FFA+++ + +G ++SMT +L VFYKQ
Sbjct: 552 LVMAAFITMTVFIRTRMGIDIIH-GNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQ 610
Query: 598 RDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQM 657
+ L FYPAW+YA+PA ++K+P+SF E W L+YYVIG+ P RFFKQ++LL V+
Sbjct: 611 KQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFT 670
Query: 658 ATALFRFIGAAGRNMIVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQN 717
+ ++FR + A + ++ + V+ + W WG+W +P+ Y +
Sbjct: 671 SISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEI 730
Query: 718 AIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTL 777
+ NEFL W + N N +LG L++RG + Y YW+ L A++GF ++FN+ FTL
Sbjct: 731 GLSVNEFLAPRWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTL 789
Query: 778 SLTFLNKFEKPRAVIFDESES 798
+LTFL RA+I + S
Sbjct: 790 ALTFLKSPTSSRAMISQDKLS 810
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1730 (614.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 344/793 (43%), Positives = 492/793 (62%)
Query: 23 TSEGTFPRSPKEE--DDDEEALKRAALENLP-----TYNSPFRKMITNSS------GEAT 69
T +F R E + DEE L+ AA+ LP T+N+ R+ T + G
Sbjct: 17 TGRESFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVV 76
Query: 70 EADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEA 129
+ DV L R+ L+ + + DN L +++R D VG+++P++EVR+ENLN+EA
Sbjct: 77 QTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEA 136
Query: 130 EAFLASKALPXXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIR 189
+ ++ALP C L+SL+I+ RK L ILKD+SGII+
Sbjct: 137 DVQAGTRALPTLVNVSRDF------FERC------LSSLRIIKPRKHKLNILKDISGIIK 184
Query: 190 PGSMTLLLGPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249
PG MTLLLGPP K +G +TYNG N+++F +R +AYISQ DN
Sbjct: 185 PGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDN 244
Query: 250 HIGEMTVRETLAFSARCQGVGSRF-DMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEA 308
HI E+TVRETL F+ARCQG F + +L + E E GI+P +ID FMKAA+ +G++
Sbjct: 245 HIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKH 304
Query: 309 NVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLD 363
+V TDY LKVLGLD+C+DT+VG++M+RG+SGGQ++RVTTG P LFMDEIS GLD
Sbjct: 305 SVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLD 364
Query: 364 SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDF 423
SSTTFQIV IR +H+++ T +++LLQPAPET+DLFDD+ILLS+G +VY GPRE V+ F
Sbjct: 365 SSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAF 424
Query: 424 FESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLT 483
FES+GF+ P RKGVADFLQEVTS+KDQ QYWA Y+F+ V + AF++ G
Sbjct: 425 FESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAAD 484
Query: 484 AELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAM 543
++L PFDK + P+AL ++ + E LK RE LL+KR+ F+Y F+ Q+ V +
Sbjct: 485 SKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGL 544
Query: 544 VSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFY 603
V+ ++F +T++ S G Y+ FF ++ MFNG S++ + I++LPVFYKQRD F+
Sbjct: 545 VTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFH 604
Query: 604 PAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLF-VNQMATALF 662
PAWS+++ +W++++P S LE W + Y+ +G P+ GRFF+ Y+LLLF V+QMA LF
Sbjct: 605 PAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFR-YMLLLFSVHQMALGLF 663
Query: 663 RFIGAAGRNMIVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVAN 722
R + + R+M++A V+ + DI WW+WG+W SP+ Y Q AI N
Sbjct: 664 RMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVN 723
Query: 723 EFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFL 782
EF W + S+ ++G+ LK R F + YWYW+G+ +IG+ ++FN TL+L +L
Sbjct: 724 EFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYL 783
Query: 783 NKFEKPRAVIFDE 795
N K RAV+ D+
Sbjct: 784 NPLRKARAVVLDD 796
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2025 (717.9 bits), Expect = 3.2e-305, Sum P(2) = 3.2e-305
Identities = 391/789 (49%), Positives = 535/789 (67%)
Query: 24 SEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMI--TNSSGEATEAD-DVSTLGPQ 80
++ F RS + E+DD E L+ AA+E LPT++ + M+ T+++G+ D D++ L P+
Sbjct: 44 TDEVFGRSERREEDDME-LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPK 102
Query: 81 ARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPX 140
++ L++ ++ DNE FL LR+R D VGI++P++EVRYEN++VE + AS+ALP
Sbjct: 103 DKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPT 162
Query: 141 XXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPP 200
T L+ L +LP+++K + ILKD+SGI++P MTLLLGPP
Sbjct: 163 LFN------------VTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPP 210
Query: 201 XXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260
++SGR+TY GH EF PQ+ AYISQHD H GEMTVRE L
Sbjct: 211 SSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREIL 270
Query: 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320
FS RC GVGSR+ +++EL +RE E GIKPDP ID FMK+ A GQE +++TDY LK+LG
Sbjct: 271 DFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILG 330
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIR 375
LDICAD L GD M RGISGGQK+R+TTG PA ALFMDEIS GLDSSTTFQI +R
Sbjct: 331 LDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMR 390
Query: 376 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERK 435
Q +HI + T +ISLLQPAPET++LFDDIILLS+G IVY GPR+ VL+FFE GF+CPERK
Sbjct: 391 QLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERK 450
Query: 436 GVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKS 495
GVADFLQEVTS+KDQ+QYW +E Y +V+V +F F +FH GQKLT+E R P+DK+K+
Sbjct: 451 GVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKT 510
Query: 496 HPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMP 555
H AAL ++YG+ EL KA RE+LLMKRNSFVY+FK Q++ +++++M+++ RT+M
Sbjct: 511 HSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMH 570
Query: 556 KDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIV 615
+V DG + GA FF+++ MFNG+++++ T+ +LPVFYKQRD FYP W++ALPAW++
Sbjct: 571 VGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLL 630
Query: 616 KIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVA 675
KIP+S +E W+ LTYY IGF P+ RFF+Q L VNQMA +LFRF+GA GR +++
Sbjct: 631 KIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVIS 690
Query: 676 XXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRK--FT 733
++++DDI W W Y+ SPMMY Q AIV NEFL W +
Sbjct: 691 NSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYD 750
Query: 734 TNSN-ESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVI 792
T N +++G LKSRGFF YW+W+ + A++GF L+FN+ + L+L +LN +A +
Sbjct: 751 TRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATV 810
Query: 793 FDESESNEK 801
+E + +K
Sbjct: 811 VEEGKDKQK 819
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1922 (681.6 bits), Expect = 2.8e-295, Sum P(2) = 2.8e-295
Identities = 377/789 (47%), Positives = 521/789 (66%)
Query: 30 RSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGE--------ATEADDVSTLGPQA 81
R + +DDEEALK AA+E LPTY S R + N+ E ++ DV+ L +
Sbjct: 41 RRTQSVNDDEEALKWAAIEKLPTY-SRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGED 99
Query: 82 RQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPXX 141
RQK ID + + DNE L KLR+R D VGI LP VEVRYE+L ++A+ + +++LP
Sbjct: 100 RQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRSLPTL 159
Query: 142 XXXXXXXXXXXXXLTTCKRL-KGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPP 200
L + + + +L + I +K LTILKD+SG+I+PG MTLLLGPP
Sbjct: 160 -------------LNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPP 206
Query: 201 XXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260
+VSG +TYNG+ +DEF P++ +AYISQ+D H+G MTV+ETL
Sbjct: 207 SSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETL 266
Query: 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320
FSARCQGVG+R+D+L EL +RE +AGI P+ D+D+FMKA+A +G + +++TDY LK+LG
Sbjct: 267 DFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILG 326
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIR 375
LDIC DT+VGD+M+RGISGGQK+RVTTG P LFMDEIS GLDSSTTFQIV ++
Sbjct: 327 LDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQ 386
Query: 376 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERK 435
Q +H+ T ++SLLQPAPET+DLFDDIIL+S+G IVY GPR+ +L+FFES GFKCPERK
Sbjct: 387 QIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERK 446
Query: 436 GVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKS 495
G ADFLQEVTS+KDQ+QYW + Y ++ V EF ++SFHVG K++ EL PFDKS+
Sbjct: 447 GTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRG 506
Query: 496 HPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMP 555
H AAL +Y V K+ELLK+ +E+LLM+RN+F Y+FK Q+ +A ++ +LF RT+M
Sbjct: 507 HKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMN 566
Query: 556 KDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIV 615
+ D +YIGA F +++ MFNG ++++M +++LPVFYKQRDL FYP+W+++LP +++
Sbjct: 567 TRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLL 626
Query: 616 KIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVA 675
IP S LE AW+ +TYY IGF P+ RFFKQ+LL+ + QMA +LFR I + R M++A
Sbjct: 627 GIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIA 686
Query: 676 XXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSW--RKFT 733
+L + I WW W YW SP+ YA N +V NE W + +
Sbjct: 687 NTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMAS 746
Query: 734 TNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIF 793
+NS LG L + + WYW+ +GA++ F +FN+ FTL+LT+LN K +A +
Sbjct: 747 SNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGK-KAGLL 805
Query: 794 DESESNEKD 802
E E+ + D
Sbjct: 806 PEEENEDAD 814
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1903 (674.9 bits), Expect = 8.7e-292, Sum P(2) = 8.7e-292
Identities = 379/791 (47%), Positives = 514/791 (64%)
Query: 22 STSEGTFPRSPKE--EDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVSTLGP 79
S S F R +D DEEALK AALE LPT+ + R I + + DV+ LG
Sbjct: 18 SNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTF-ARLRTTIIHPHEDLV---DVTKLGV 73
Query: 80 QARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALP 139
RQK ID + + DNE FL K R+R D V I LP VEVR+E + +EA + +ALP
Sbjct: 74 DDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALP 133
Query: 140 XXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGP 199
L +R L L T+ +TIL+DVSGII+P MTLLLGP
Sbjct: 134 TLPNAA---------LNIAER---GLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGP 181
Query: 200 PXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259
P KV+GRVTYNGH ++EF PQ+ +AYISQ+D H+G MTV+ET
Sbjct: 182 PSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQET 241
Query: 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL 319
L FSARCQGVG+R+D+L+EL +RE +AGI P+P++D+FMK+ A +++++TDY L++L
Sbjct: 242 LDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRIL 301
Query: 320 GLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSI 374
GLDIC DT+VGDEMIRGISGGQK+RVTTG P LFMDEIS GLDSSTT+QIV +
Sbjct: 302 GLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL 361
Query: 375 RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPER 434
++ + + T ++SLLQPAPET++LFDDIILLS+G IVY GPR+ VL FFE+ GFKCP+R
Sbjct: 362 QEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDR 421
Query: 435 KGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSK 494
KG ADFLQEVTSRKDQ+QYWA + Y +++V EF + F++FHVG L +L P+D+ K
Sbjct: 422 KGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFK 481
Query: 495 SHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKM 554
SHPA+L K++ V K +L K RE LLMKRN+F YI K Q+ +A+++ +++ RT+M
Sbjct: 482 SHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEM 541
Query: 555 PKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWI 614
+ +DG +YIGA F++++ MFNG +++++ I +LPVFYKQRDL F+P W+++LP ++
Sbjct: 542 GTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFL 601
Query: 615 VKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIV 674
+ IPIS E WV +TYY+IGF P + RF K L++ QMA +FRFI A R+MI+
Sbjct: 602 LGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMIL 661
Query: 675 AXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKFTT 734
A ++ R +I KWW W YW SPM Y +A+ NE L W +
Sbjct: 662 ANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPS 721
Query: 735 NSNE-SLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIF 793
+ N SLG+ L+ F WYW+G+G ++GF ++FN+ TL+LTFLN EK +AV+
Sbjct: 722 SDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVS 781
Query: 794 DES-ESNEKDN 803
E+ E N +N
Sbjct: 782 KENTEENRAEN 792
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1736 (616.2 bits), Expect = 5.2e-263, Sum P(2) = 5.2e-263
Identities = 360/793 (45%), Positives = 496/793 (62%)
Query: 18 STWRSTSEGTFPRSPKEE--DDDEEALKRAALENLPTYNSPFRKMITNSSGEATEAD--- 72
S++RS+S R+ E+ D+ E AL+ A ++ LPT+ R + + GE TE
Sbjct: 3 SSFRSSSS----RNEHEDGGDEAEHALQWAEIQRLPTFKR-LRSSLVDKYGEGTEKGKKV 57
Query: 73 -DVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEA 131
DV+ LG R +I+KL++ DN L K+R R + VG++ P +EVRYE+L VEA
Sbjct: 58 VDVTKLGAMERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAAC 117
Query: 132 -FLASKALPXXXXXXXXXXXXXXXLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRP 190
+ KALP + K + L L + T + ++ IL DVSGII P
Sbjct: 118 EVVEGKALPTLW-------------NSLKHVFLDLLKLSGVRTNEANIKILTDVSGIISP 164
Query: 191 GSMTLLLGPPXXXXXXXXXXXXXXXXXXXKVSGRVTYNGHNMDEFEPQRVAAYISQHDNH 250
G +TLLLGPP K G ++YNGH ++E PQ+ +AYISQHD H
Sbjct: 165 GRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLH 224
Query: 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANV 310
I EMT RET+ FSARCQGVGSR D++ E+ KRE + GI PDP+ID +MKA + +G + ++
Sbjct: 225 IAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSL 284
Query: 311 LTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT-----GPALALFMDEISNGLDSS 365
TDY LK+LGLDICA+TLVG+ M RGISGGQK+R+TT GP ALFMDEI+NGLDSS
Sbjct: 285 QTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSS 344
Query: 366 TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFE 425
T FQI+ S++Q HI N T +SLLQPAPE+YDLFDDI+L+++G IVY GPR+ VL FFE
Sbjct: 345 TAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFE 404
Query: 426 SMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAE 485
GF+CPERKGVADFLQEV S+KDQ QYW H+ + + FV+V + F+ +G+K+
Sbjct: 405 ECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEA 464
Query: 486 LRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVS 545
L P+D SK+H ALS Y + K EL +A ISREFLLMKRN FVY+FK QL A+++
Sbjct: 465 LSKPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIIT 524
Query: 546 MSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPA 605
M++F RT+M D ++ G Y+ FFA ++ + +G+ ++SMT+ +L VFYKQ+ L FYPA
Sbjct: 525 MTVFIRTRMDIDIIH-GNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPA 583
Query: 606 WSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFI 665
W+YA+PA ++KIP+SF E W LTYYVIG+ P RFF+Q+++L V+ + ++FR I
Sbjct: 584 WAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCI 643
Query: 666 GAAGRNMIVAXXXXXXXXXXXXXXXXXVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFL 725
A + + A + D+ W WG+W +P+ YA+ + NEFL
Sbjct: 644 AAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFL 703
Query: 726 GHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKF 785
W+K +N +LG L+SRG Y YW+ L A++G ++FN FTL+L+FL
Sbjct: 704 APRWQKMQP-TNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSP 762
Query: 786 EKPRAVIFDESES 798
R +I + S
Sbjct: 763 TSSRPMISQDKLS 775
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5605 | 0.9491 | 0.9329 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6730 | 0.9707 | 0.9567 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6501 | 0.9658 | 0.9747 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6376 | 0.9658 | 0.9625 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6744 | 0.9616 | 0.9630 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6577 | 0.9561 | 0.9561 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6723 | 0.9707 | 0.9567 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00034512001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1447 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1436 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-91 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-88 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-71 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-67 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-53 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-44 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-41 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-35 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-34 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-31 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-30 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-26 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-21 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-11 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-11 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-09 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-08 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-07 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-06 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 8e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 9e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-04 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-04 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 3e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 0.001 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.001 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.001 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.001 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.001 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.002 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 0.003 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.003 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 0.004 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.004 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1906 bits (4939), Expect = 0.0
Identities = 820/1454 (56%), Positives = 1028/1454 (70%), Gaps = 65/1454 (4%)
Query: 30 RSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEAD--------DVSTLGPQA 81
R D+DEEALK AA+E LPTY+ R I S E DV+ L
Sbjct: 35 RRTSSVDEDEEALKWAAIEKLPTYSR-LRTSIMKSFVENDVYGNQLLHKEVDVTKLDGND 93
Query: 82 RQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTF 141
RQK ID + + DNE FL K R+R D VGI LP VEVR+E+L VEA+ ++ S+ALPT
Sbjct: 94 RQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTL 153
Query: 142 TNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPS 201
N NI E +L L I +K LTILKD SGII+P MTLLLGPPS
Sbjct: 154 PNAARNIAE------------SALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPS 201
Query: 202 SGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLA 261
SGKTTLLLALAGKLD SLKVSG +TYNG+ ++EF P++ +AYISQ+D H+G MTV+ETL
Sbjct: 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261
Query: 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321
FSARCQGVG+R+D+L+EL +RE +AGI P+ ++D+FMKA A EG +++++TDY LK+LGL
Sbjct: 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321
Query: 322 DICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIRQ 376
DIC DT+VGDEMIRGISGGQK+RVTTG P LFMDEIS GLDSSTT+QIV ++Q
Sbjct: 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381
Query: 377 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKG 436
+H+ T ++SLLQPAPET+DLFDDIILLS+G IVY GPR+ +L+FFES GFKCPERKG
Sbjct: 382 IVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441
Query: 437 VADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSH 496
ADFLQEVTS+KDQ+QYWA + YR+++V EF E F+SFHVG +L EL PFDKS+SH
Sbjct: 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSH 501
Query: 497 PAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPK 556
AAL +Y V K ELLKA +E+LLMKRN+FVY+FK Q+ VA ++ ++F RT+M
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 557 DSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVK 616
+ DG +YIGA F++++ MFNG +++++ I +LPVFYKQRDL F+P W++ LP +++
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLG 621
Query: 617 IPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAM 676
IPIS +E WV +TYY IGF P RFFKQ LL+ + QMA +FR I + R MI+A
Sbjct: 622 IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681
Query: 677 SFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSW-RKFTTN 735
+ G+ LL++F LGGF+L + +I WW W YW SP+ Y NA+ NE W K ++
Sbjct: 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD 741
Query: 736 SNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDE 795
++ LG L F WYW+G+GA++GF ++FNV FTL+LT+LN K +A+I
Sbjct: 742 NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAII--- 798
Query: 796 SESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRK 855
S E G S SS+ + E +S + + + K
Sbjct: 799 --SEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPK 856
Query: 856 KGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSG 915
+GMVLPF P +++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPGVLTALMGVSG
Sbjct: 857 RGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSG 916
Query: 916 AGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975
AGKTTLMDVLAGRKTGGYI G I ISG+ KKQETF RISGYCEQNDIHSP VTV ESL+Y
Sbjct: 917 AGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIY 976
Query: 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1035
SA+LRLP EV E + MF++E+MELVEL+ L+ ++VGLPGV+GLSTEQRKRLTIAVELVA
Sbjct: 977 SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA 1036
Query: 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE------- 1088
NPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Query: 1089 ---------------------AIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYK 1127
AIPGV KIK+ NPATWMLEV++ + E+ LG+DF YK
Sbjct: 1097 GQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYK 1156
Query: 1128 LSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVR 1187
S LY+RNKAL++ELS P PG+ D+YF TQYS+S + QF +CLWKQ W+YWR+P YN VR
Sbjct: 1157 SSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR 1216
Query: 1188 FLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAV 1247
F FT A AL GT+FW +GTK DL +G+MY AV FVG CS+VQP+VAVER V
Sbjct: 1217 FFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTV 1276
Query: 1248 FYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFF 1307
FYRE+ AGMYS +PYA AQV+ EIPY+ + + Y +IVYAM+ FEWTAAKFFW+ F FF
Sbjct: 1277 FYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFF 1336
Query: 1308 TLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVA 1367
+ LYFT+YGMMTV++TPN +AAI + FYGL+N+FSGF IPRP+IP+WW WYYW PVA
Sbjct: 1337 SFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVA 1396
Query: 1368 WTMYGLFASQFGDVEDK-----MENGETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGV 1422
WT+YGL SQ+GDVED T+K ++++++ + +F+G VA V+ F V F
Sbjct: 1397 WTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAF 1456
Query: 1423 LFAAGIKRFNFQNR 1436
+FA I+ NFQ R
Sbjct: 1457 IFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1078 bits (2791), Expect = 0.0
Identities = 380/1398 (27%), Positives = 614/1398 (43%), Gaps = 188/1398 (13%)
Query: 93 PSVDNEHFLLKLRDRFDAVGIDLPE--VEVRYENLNVEAEAFLASKALPTFTNFFTNIIE 150
+ + ++ R D+ I + V Y+NL+ A S PTF N
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNAL----- 54
Query: 151 FIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLA 210
K L L+ K ILK + G+I+PG +T++LG P SG +TLL
Sbjct: 55 -------LKILTRGFRKLK-KFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106
Query: 211 LAGKLDSSLK-VSGRVTYNGHNMDEFEPQRVA--AYISQHDNHIGEMTVRETLAFSARCQ 267
+A D V G +TY+G +E + Y ++ D H +TV ETL F+ARC+
Sbjct: 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCK 166
Query: 268 GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327
+R D ++ + ++ + D Y+ GL +T
Sbjct: 167 TPQNRPDGVSREEYAKH--------------------------IADVYMATYGLSHTRNT 200
Query: 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILN 382
VG++ +RG+SGG+++RV+ A D + GLDS+T + + +++ + +IL+
Sbjct: 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260
Query: 383 GTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442
T ++++ Q + + Y+LFD +I+L +G +Y GP + +FE MGFKCP+R+ ADFL
Sbjct: 261 TTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLT 320
Query: 443 EVTSRKDQQQYWAHKEMR-YRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKS-------- 493
+TS ++Q E + R T QEF +++ +L E+ D+
Sbjct: 321 SLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEA 377
Query: 494 ------KSHP-AALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSM 546
Y V +K ++R FL MK N +F + +A++
Sbjct: 378 YRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILS 437
Query: 547 SLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAW 606
S+F+ + +D GA FFA++ F+ + +I+ P+ K R Y
Sbjct: 438 SVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPS 494
Query: 607 SYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIG 666
+ A+ + I +IP +E + + Y+++ F GRFF L+L + LFR IG
Sbjct: 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIG 554
Query: 667 AAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLG 726
A + + AM+ + LL L GF + R + W W Y+ +P+ YA +++ NEF G
Sbjct: 555 AVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG 614
Query: 727 HSWRKFT--------TNSNESLGVQALKS--------------RGFFPHAY-WYWLGLGA 763
+ N + V + + F + W G
Sbjct: 615 RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGI 674
Query: 764 VIGFLLVFNVGFTLSLTFLNKFE-KPRAVIFDESESNEKDNRTGGTLQSSTSGSSSSLRT 822
+IGF + F + L F + K ++F K + G +S
Sbjct: 675 IIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGS--LKRAKKAGETSASNKNDI----- 727
Query: 823 RSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEM 882
+ G VL + D+V DM +E
Sbjct: 728 --------------------------------EAGEVLGSTDLTDESDDVNDEKDMEKES 755
Query: 883 KL-----------QGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 931
+ ++K V+LN V G +PG LTALMG SGAGKTTL++VLA R T
Sbjct: 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT 815
Query: 932 GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRK 991
G ITG + +F R GY +Q D+H P TV ESL +SA+LR P V +
Sbjct: 816 GVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKM 875
Query: 992 MFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLD 1050
++EE+++L+E+ ++VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD
Sbjct: 876 EYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE---------------------- 1088
++ A + + ++ + G+ ++CTIHQPS +FE FD
Sbjct: 935 SQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994
Query: 1089 -----AIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELS 1143
G K + NPA WMLEV + D+H +++ S Y+ K ++ L
Sbjct: 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLE 1054
Query: 1144 KPVPGSKDIYFPT---QYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGT 1200
+ ++D P +Y+ S + QF LW+ YWR P Y +F T AL G
Sbjct: 1055 AELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGF 1114
Query: 1201 MFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGM 1260
F+ +GT ++ L N M +++ A + P VA RE+ + +S +
Sbjct: 1115 TFFKVGTSLQ---GLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWL 1171
Query: 1261 PYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAK-------FFWYLFFMFFTLLYFT 1313
+ AQ+ +EIPY V ++ I Y +GF W A+K + LYF+
Sbjct: 1172 AFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFS 1231
Query: 1314 FYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGL 1373
G M ++ PN AA++++L + + F G + P R+P +W + Y +P + + L
Sbjct: 1232 TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQAL 1291
Query: 1374 FASQFGDVEDKMENGETV 1391
++ DV + E +
Sbjct: 1292 LSTGLADVPVTCKVKELL 1309
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 9e-91
Identities = 103/225 (45%), Positives = 129/225 (57%), Gaps = 47/225 (20%)
Query: 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 923
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 924 VLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983
VLAGRKT G ITG I I+G + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGR-PLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088
EPTSGLD++AA ++R +K ++G+ ++CTIHQPS IFE FD
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = 9e-88
Identities = 163/529 (30%), Positives = 253/529 (47%), Gaps = 50/529 (9%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSITISGYLKKQETFTR 952
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +GS+ ++G +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++E+++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 1013 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1071
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ +K + G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1072 VCTIHQPSIDIFESFD-----------------EAIPGVQKIKDGC----NPATWMLEVT 1110
+CTIHQPS ++FE FD +A+P + C NPA + ++V
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279
Query: 1111 ARSQ--ELALGVDFHNI---YKLSDLYRRNKALIEELSKPVPG---SKDIYFPTQYSRSF 1162
A E I + +SD+ R S G + Y+ S+
Sbjct: 280 AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 1163 FMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVK----RNRDLFNA 1218
+ QF A L + S R+P VR + T A+ G ++ G K N LF
Sbjct: 340 WTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLF 399
Query: 1219 MGSM-YTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVL 1277
+ +M + VF V V E VF RE +G+Y Y A+ + E+P +L
Sbjct: 400 LTNMTFQNVF--------PVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIIL 451
Query: 1278 SVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFY 1337
++ I Y MIG A F +LF + T +G + + +A V F
Sbjct: 452 PALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFV 511
Query: 1338 GLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMY---GLFASQFGDVED 1383
+ +F GF I IP +++W + ++W Y GL +Q+ DV++
Sbjct: 512 IPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 2e-71
Identities = 160/670 (23%), Positives = 291/670 (43%), Gaps = 88/670 (13%)
Query: 144 FFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKH-LTILKDVSGIIRPGSMTLLLGPPSS 202
F + + + RL+G R++ +LK+VSG+ +PG + ++G +
Sbjct: 10 VFGRVAQDGSWKQLVSRLRGCF-------CRERPRKHLLKNVSGVAKPGELLAVMGSSGA 62
Query: 203 GKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAF 262
GKTTL+ ALA + +K SG V NG +D E + ++AY+ Q D I +TVRE L F
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMF 122
Query: 263 SARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322
A M + K+E + VL LGL
Sbjct: 123 QA-------HLRMPRRVTKKEKRERVD-------------------EVLQA-----LGLR 151
Query: 323 ICADTLVGDE-MIRGISGGQKRRVT------TGPALALFMDEISNGLDSSTTFQIVNSIR 375
CA+T +G ++G+SGG+++R+ T P L LF DE ++GLDS + +V ++
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK 210
Query: 376 QNIHILNG--TAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPE 433
+ T + ++ QP+ E ++LFD IIL+++G + YLG + + FF +G CPE
Sbjct: 211 ---GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPE 267
Query: 434 RKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKS 493
ADF +V + + E R +++ C++F +G+ +
Sbjct: 268 NYNPADFYVQVLAVIPGSE----NESR---ERIEKICDSFAVSDIGRDMLVNTNL----- 315
Query: 494 KSHPAALSMKEYGVGKKELLKANISREF-LLMKRNSFVYIFK--------LTQLSTVAMV 544
S A +K+ + A+ +F L+KR S++ + + L Q A++
Sbjct: 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAIL 374
Query: 545 SMSLFFRTKMPKDSV--NDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRF 602
++ + + V +G ++ F MT N I++ A+LPVF ++
Sbjct: 375 IGLIYLGQGLTQKGVQNINGALF----LFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430
Query: 603 YPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALF 662
Y +Y L I ++P+ + A + +TY++IG F L+ V +AT+
Sbjct: 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490
Query: 663 RFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVAN 722
I A + +A++ G ++ GGF ++ D I ++ W + S Y ++ N
Sbjct: 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLIN 550
Query: 723 EFLGHSWRKFTTNSNESL-----GVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTL 777
++ T++N + G L++ F +L L ++ + F +
Sbjct: 551 QWSDVD-NIECTSANTTGPCPSSGEVILETLSF--RNADLYLDLIGLVILIFFFRLLAYF 607
Query: 778 SLTFLNKFEK 787
+L + ++
Sbjct: 608 ALRIRIRRKR 617
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 223 bits (572), Expect = 5e-67
Identities = 87/223 (39%), Positives = 129/223 (57%), Gaps = 44/223 (19%)
Query: 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 925
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 926 AGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEV 985
AGR+TG ++G + I+G + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 986 DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088
TSGLD+ +A VM ++ +TGRT++C+IHQPS +IFE FD+
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 2e-53
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 1164 MQFMACLWKQHWSYWRNPPYN-AVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSM 1222
Q A L ++ WR+P R + +AL FGT+F ++ T + N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSL----GGLNRPGLL 56
Query: 1223 YTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYG 1282
+ ++ F + + PV ER V RE + +YS Y A++++E+P + ++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1283 VIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNV 1342
+IVY M+G + +FF +L + T L + G+ A+ P+ A+ + L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1343 FSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQF 1378
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 3e-52
Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 5/198 (2%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSITISGYLKKQETFTR 952
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G +K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
Y Q+DI P +TV E+L Y+A LRLP + RK E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDLALTR---IG 137
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1073 CTIHQPSIDIFESFDEAI 1090
TIHQP D+F FD +
Sbjct: 198 LTIHQPRSDLFRLFDRIL 215
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 8/216 (3%)
Query: 511 ELLKANISREFLLMKRNSFV-YIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGAS 569
LKA + REFL R+ + +++L Q +A+V ++F +N G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN----RPGLL 56
Query: 570 FFAVMMTMFNGMSDISMT-IAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWV 628
FF+++ F+ ++ IS I + V ++ Y +Y L +V++PIS L+ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 629 FLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFA 688
+ Y+++G + RFF L+LL A+ L FI A + A G LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 689 LGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEF 724
L GF + D + W W Y+ +P+ YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 5e-41
Identities = 120/449 (26%), Positives = 211/449 (46%), Gaps = 69/449 (15%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
+LNGV+G PG + A++G SG+GK+TL++ LAGR G TG+I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
G+ Q+DI P +TV E+L++ + LRLP + + + + E ++ + L +++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1073
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1074 TIHQPS---------------------------IDIFES--FDEAIPGVQKIKDGCNPAT 1104
++HQPS + FES F + P NPA
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFP--------MNPAD 313
Query: 1105 WMLE----------VTARSQ-----------ELALGVDFHNIYKLSDLYRRNKALIEELS 1143
++L+ V+ R + L ++S + N + S
Sbjct: 314 FLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAS 373
Query: 1144 KPVPGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFW 1203
S D ++F QF + L ++ ++ +N +R A AL G M+W
Sbjct: 374 TKEHRSSD----RISISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWW 428
Query: 1204 DMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYA 1263
RD+ + +G ++ F G + V ERA+F +E+ +GMY+ Y
Sbjct: 429 H-----SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYF 483
Query: 1264 FAQVMIEIPYLFVLSVVYGVIVYAMIGFE 1292
A+++ ++P +L ++ + Y M G +
Sbjct: 484 MARIVGDLPMELILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 7e-41
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY--LKKQ 947
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY +K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
R GY Q P +TV E+L + A L + ++E R IEE++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVE 1066
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + ++ E
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1067 TGRTVVCTIHQPSIDIFESFDEAI 1090
G T++ + H + E D I
Sbjct: 186 GGVTILLSTHILE-EAEELCDRVI 208
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 7e-39
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 41/245 (16%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 235
K+ IL DVS + G + +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+ Q+ AY+ Q D + +TVRETL ++A + R++ I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVED 125
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
V ++ A T +G +++GISGG++RRV+ L
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE ++GLDS T +V+++ Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGE 221
Query: 411 IVYLG 415
IVY G
Sbjct: 222 IVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-36
Identities = 80/292 (27%), Positives = 129/292 (44%), Gaps = 56/292 (19%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
T L VS + PG + LLGP +GKTTLL LAG L + SG + G+++ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 235 FEPQ--RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+ R Y+ Q + E+TVRE L F AR G+ ++R E
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA-----EERIEE------- 119
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
L++ GL+ A+ V R +SGG K+R++ AL
Sbjct: 120 ----------------------LLELFGLEDKANKKV-----RTLSGGMKQRLSIALALL 152
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS--LLQPAPETYDLFDDIIL 405
L +DE ++GLD + +I +R+ T ++S +L+ E +L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 406 LSDGLIVYLGPRELVLDFFESMGFKC--PERKGVADFLQEVTSRKDQQQYWA 455
L+DG I+ G E + + F G PER +A+ L+ + K +++
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 9e-35
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 160 RLKGSLNSLQILPTRKKH-LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218
S ++ + + + ILKD SG+++PG M L+LG P SG +TLL ALA + + +
Sbjct: 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60
Query: 219 LKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGEMTVRETLAFSARCQG 268
+ V G + YNG EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 61 VSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 330 GDEMIRGISGGQKRRVT-----TGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGT 384
G+E +RGISGG+++RV+ A L D + GLDSST +I+ IR +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 385 AVISLLQPAPETYDLFDDIILLSDGLIVYLG 415
+SL Q + E YDLFD +++L +G +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY--LKKQETF 950
++ +S G + L+G +GAGKTT + +L G R T +G+ I+GY ++
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRS 184
Query: 1071 VVCTIH 1076
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-31
Identities = 133/553 (24%), Positives = 250/553 (45%), Gaps = 65/553 (11%)
Query: 158 CKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217
KR+ G + + + TIL V+G+ PG + +LGP SGK+TLL ALAG++
Sbjct: 61 IKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG 120
Query: 218 SLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLT 277
+ +G + N + +R +++Q D +TVRETL F + L
Sbjct: 121 N-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVRETLVFCS-----------LL 167
Query: 278 ELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337
L K + QE ++ + + LGL C +T++G+ IRGI
Sbjct: 168 RLPK--------------------SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI 207
Query: 338 SGGQKRRVTTG------PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
SGG+++RV+ P+L L +DE ++GLD++ +++V ++ T V S+ Q
Sbjct: 208 SGGERKRVSIAHEMLINPSL-LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQ 265
Query: 392 PAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQ 451
P+ Y +FD +++LS+G ++ G + +FES+GF ADFL ++ + Q
Sbjct: 266 PSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT 325
Query: 452 QYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTA-ELRTPFDKSKSHPAALSMKEYGVGKK 510
+ +E + Q ++ + + A E+ + + S KE+ +
Sbjct: 326 DGVSERE---KPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDR 382
Query: 511 ELLKANISREFLLMKR-------NSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGG 563
+ ++ +L++R SF ++ Q+ A+++ +++ + +D V D
Sbjct: 383 ISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHSDF-RD-VQD-- 437
Query: 564 IYIGASFFAVMMTMFNGMSDISMTIAKLP----VFYKQRDLRFYPAWSYALPAWIVKIPI 619
+G FF +++F G+ ++ P +F K+R Y SY + + +P+
Sbjct: 438 -RLGLLFF---ISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPM 493
Query: 620 SFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFG 679
+ ++ +TY++ G P +G F L+LL ++ L +GAA + A +
Sbjct: 494 ELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV 553
Query: 680 SFALLMLFALGGF 692
+ +L GGF
Sbjct: 554 TVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-30
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
K +LK+VSG +PG +T ++GP +GK+TLL ALAG+ + L VSG V NG
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 232 MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269
+D+ +++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISGYLKK 946
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G I +G K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA-AIVMRTVKN 1063
G V G+S +RKR++IA LV+ S++ D T GLD+ A I+
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1064 TVETGRTVVCTIHQPSIDIFESFDE 1088
T +++Q S +I++ FD+
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDK 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 883 KLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI 940
+L+ + + K L+GVS PG+ L+G +GAGKTTLM +LA G+I I
Sbjct: 2 QLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRI 58
Query: 941 SGY--LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIM 998
G LK+ + R GY Q P TV E L Y AWL+ + S+ K ++E++
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVL 115
Query: 999 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
ELV L + +G LS R+R+ IA LV +PSI+ +DEPT+GLD I
Sbjct: 116 ELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF 169
Query: 1059 RTVKNTVETGRTVVCTIH 1076
R + + + R V+ + H
Sbjct: 170 RNLLSELGEDRIVILSTH 187
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQET---F 950
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 951 TRISGYCEQNDIHSP---LV--TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
R G QN P TV E + + PE + E R +EE +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ +K
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1066 ETGRTVVCTIHQPSIDIFESFDEAI 1090
G+T++ H + E D I
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 729 WRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKP 788
W K + SNE+LG LKSRG F AYWYW+G+GA++GF ++FN+ FTL+LT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 789 RAVI 792
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 5e-22
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFTR 952
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G ++K+ R
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 953 ISGYCEQNDIHSPL--VTVYE---SLLYSA--WLRLPPEVDSETRKMFIEEIMELVELNP 1005
I GY Q +TV + Y W R + D E ++E +E V +
Sbjct: 77 I-GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGMED 131
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
LR +G LS Q++R+ +A L NP ++ +DEP +G+D + +K
Sbjct: 132 LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 1066 ETGRTVVCTIHQPSIDIFESFDEAI 1090
+ G+TV+ H + + FD I
Sbjct: 187 QEGKTVLMVTHDLGL-VMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 27/206 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L VS +PG A++G +GAGK+TL+ + G + T +GSI + G ++ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGK-PLEKERKR 69
Query: 953 ISGYCEQN---DIHSPLVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
I GY Q D P ++V + +L + R + D ++E +E V L+
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLS 123
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + ++
Sbjct: 124 ELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 1065 VETGRTVVCTIHQPSIDIFESFDEAI 1090
G T++ H + + E FD +
Sbjct: 179 RREGMTILVVTHDLGL-VLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 8e-22
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG---YLKKQET 949
+L+ +S + G +T ++G +G+GK+TL+ LAG +G + + G +
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 950 FTRISGYCEQNDIHSPLVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ Y Q+ +TVYE +L + P + D E +EE +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN- 1063
L V LS +R+R+ IA L I+ +DEPTS LD V+ +++
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1064 TVETGRTVVCTIHQP 1078
E G TVV +H
Sbjct: 185 NREKGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-21
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 27/196 (13%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLK 945
++ +L+ +S G + AL G +GAGKTTL +LAG +++ G SI ++G
Sbjct: 9 YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPI 64
Query: 946 KQETFTRISGYCEQN-DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
K + + GY Q+ D +V E LL E+D+ + E +++ ++L
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLY 117
Query: 1005 PLR----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
L+ SL S Q++RL IA L++ ++ DEPTSGLD + V
Sbjct: 118 ALKERHPLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 1061 VKNTVETGRTVVCTIH 1076
++ G+ V+ H
Sbjct: 169 IRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 5e-21
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
P + +L ++SG ++PG++T L+G +GKTTLL LAG+ + + ++G + NG
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRP 72
Query: 232 MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVG 270
+D+ QR Y+ Q D H +TVRE L FSA +G+
Sbjct: 73 LDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 7e-21
Identities = 61/245 (24%), Positives = 101/245 (41%), Gaps = 65/245 (26%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L D+S I+ G L++GP SGK+TLL L G L SG V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 240 VA---AYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+ + Q+ D+ TV E +AF G+ ++ ++R EA
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEI----EERVEEA--------- 118
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
L+++GL+ D +SGGQK+RV LA
Sbjct: 119 --------------------LELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDII 404
L +DE + GLD + +++ +++ + T +I T+DL D +I
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIV-------THDLDLLLELADRVI 205
Query: 405 LLSDG 409
+L DG
Sbjct: 206 VLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 7e-21
Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 36/223 (16%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQ 947
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 948 ETFTR---ISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLE 126
Query: 1003 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1058 MRTVKNTV-ETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
M ++ E G T+V H P ++ E D I +++DG
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRII----ELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 25/226 (11%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIT 939
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 940 ISGYLKKQET-FTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFI 994
++ +K+ R G+ QN L+ TV E++ + + RK
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN---FNLLPDLTVLENVELPLLIAG---KSAGRRKRAA 122
Query: 995 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
EE++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 123 EELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 1055 AIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
V+ ++ E G+T++ H P ++ + D I ++KDG
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI----ELKDG 218
|
Length = 226 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-20
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-- 943
++GV+ R G + +G +GAGKTT + +L R T G + ++GY
Sbjct: 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDV 57
Query: 944 LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
+++ R G Q +T E+L L P+ ++E R EE++EL EL
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFEL 114
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
VG S R+RL IA L+ P ++F+DEPT+GLD R + ++
Sbjct: 115 GEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
Query: 1064 TVETGRTVVCTIH 1076
E G T++ T H
Sbjct: 170 LKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 48/229 (20%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----LKKQE-- 948
L VS + PG AL+G SGAGK+TL+ L G +GS+ I G LK +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 949 TFTRISGYCEQNDIHSPLV---TVYESLL---------YSAWLRLPPEVDSETRKMFIEE 996
R G Q L+ +V E++L + + L P+ + +
Sbjct: 75 QLRRQIGMIFQ---QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQR 124
Query: 997 IMELVELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
+ +E VGL LS Q++R+ IA L+ P +I DEP + LD
Sbjct: 125 ALAALER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP 177
Query: 1052 RAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
++ VM +K E G TV+ ++HQ D+ + + I G +KDG
Sbjct: 178 ASSRQVMDLLKRINREEGITVIVSLHQV--DLAREYADRIVG---LKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 882 MKLQGVHED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGS 937
++L+G+ + + L+ +S PG AL+G SG GKTTL+ ++AG R G
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG----E 56
Query: 938 ITISGYLKKQETFTRIS------GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRK 991
I I G T + G Q+ P +TV E++ + LR P+ + R
Sbjct: 57 ILIDG-----RDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR- 110
Query: 992 MFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
+ E++ELV L L LS Q++R+ +A L PS++ +DEP S LDA
Sbjct: 111 --VRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163
Query: 1052 RAAAIVMRTVKNT-VETGRTVVCTIHQPS 1079
+ + +K E G T + H
Sbjct: 164 KLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 88.2 bits (220), Expect = 6e-20
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 52/186 (27%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY--LKKQETF 950
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
G ++RL +A L+ +P ++ +DEPTSGLD + ++ + G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1071 VVCTIH 1076
++ + H
Sbjct: 148 ILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 58/217 (26%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 233
+K + D+S + G + LLG +GKTT L L G+L + SG NG+++
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67
Query: 234 EFEPQRVAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 68 T---DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
E + L+VLGL A+ +SGG KR+++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 349 PALA-----LFMDEISNGLDSSTT---FQIVNSIRQN 377
AL L +DE ++GLD ++ + ++ +R+
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG 182
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 7e-20
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 29/204 (14%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---- 943
+ D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 944 LKKQETFTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
L + +IS + QN P + T+ E++L L P D E I ++
Sbjct: 388 LSPEAWRKQIS-WVSQN----PYLFAGTIRENIL----LARPDASDEE-----IIAALDQ 433
Query: 1001 VELNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA
Sbjct: 434 AGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ 493
Query: 1056 IVMRTVKNTVETGRTVVCTIHQPS 1079
I+++ ++ + +TV+ H+
Sbjct: 494 IILQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 4e-19
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 48/202 (23%)
Query: 882 MKLQGVHED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 936
++L+ V + + +LN VS G + AL+G SG+GK+TL+ +AG G I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 937 SITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
++ + R G Q+ P +TV E++
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--------------------- 99
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
GLS Q++R+ +A L +P ++ +DEPTS LD
Sbjct: 100 ---------------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1057 VMRTVKNTVET-GRTVVCTIHQ 1077
V +K+ G TVV H
Sbjct: 139 VRALLKSLQAQLGITVVLVTHD 160
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-19
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY--LKKQETF 950
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ +++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GR 1069
V S R+RL IA LV P ++F+DEPT GLD + A V ++ E G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1070 TVVCTIH 1076
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 30/232 (12%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GS 937
L V+ + L ++ PG A++G SGAGK+TL+ + + G I
Sbjct: 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65
Query: 938 ITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL---------YSAWLRLPPEVDSE 988
IT K ++ RI G Q+ +TV E++L + + L E D E
Sbjct: 66 ITKLRGKKLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124
Query: 989 TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
R + E + L + R LS Q++R+ IA L P +I DEP +
Sbjct: 125 -RALSALERVGLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 1049 LDARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
LD + + VM +K E G TV+ +HQ +D+ + + + I G +K G
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVG---LKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G ++ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 239 RVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+A AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
+ +E + + L++LGL+ AD V + +SGG+++RV ALA
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQET 157
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE ++ LD + +++ +R ++ G V+ +L D +ILL DG
Sbjct: 158 PILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216
Query: 411 IVYLGPRELVL 421
IV G E VL
Sbjct: 217 IVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 4e-18
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 48/193 (24%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKK 946
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+ R Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV- 1065
+ LS +R+R+ +A L P I+ +DEPTS LD ++ ++
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1066 ETGRTVVCTIHQP 1078
E G+TVV +H
Sbjct: 146 ERGKTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 4e-18
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 18/196 (9%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLK 945
+ +L G++ A G + AL+G +GAGK+TL+ L G R G + Y +
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 946 KQETFTRIS-GYCEQN---DIHSPLVTVYESLLYSAW-LRLPPEVDSETRKMFIEEIMEL 1000
K R G Q+ + + V + + + L L + E R + E +
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA-EVERR---VREALTA 114
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
V + LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++
Sbjct: 115 VGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 1061 VKNTVETGRTVVCTIH 1076
++ G TVV + H
Sbjct: 170 LRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 4e-18
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFTR--IS 954
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
+ +++ L T E+L Y A L + + K I E+ + ++L VG
Sbjct: 79 VLFGERGLYARL-TARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
ST ++++ IA LV +PSI+ +DEPTSGLD R +K GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1075 IH 1076
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSITISGY 943
+ + L VS G L+G +G+GK+TL+ +L G + T G + G T S
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK 72
Query: 944 LKKQETFTRISGYCEQNDIHSPLV-TVYESLLYSA-WLRLPPEVDSETRKMFIEEIMELV 1001
+ + G QN TV + + + L LP E + E R + E +ELV
Sbjct: 73 SLLE--LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-EIEER---VAEALELV 126
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ +
Sbjct: 127 GLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 1062 KNTV-ETGRTVVCTIHQPSIDIFESFDEAIP 1091
K E G+T++ H + E D +
Sbjct: 182 KKLKEEGGKTIIIVTHDLE-LVLEYADRVVV 211
|
Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 2e-17
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQE 948
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G L E
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITG-LPPHE 71
Query: 949 --------TFTRISGYCEQNDIHSPLVTVYESLL--------YSAWLRLPPEVDSETRKM 992
TF + E TV E+++ L + E R+
Sbjct: 72 IARLGIGRTFQIPRLFPEL--------TVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 -AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177
Query: 1053 AAAIVMRTVKNTVETGRTVV 1072
+ ++ E G TV+
Sbjct: 178 ETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY------- 943
+L GV R G + A++G SG+GK+TL+ ++ G R G + I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 944 LKKQETFTRISGYCEQNDIHSPL---VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
+ R+ G Q L +TV+E++ + LR E ++ EEI E+
Sbjct: 70 AELYRLRRRM-GMLFQ---SGALFDSLTVFENVAF--PLR-------EHTRLSEEEIREI 116
Query: 1001 VELNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
V + VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+
Sbjct: 117 VLE---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173
Query: 1056 IVMRTVKNTVET-GRTVVCTIHQ 1077
++ +++ + G T + H
Sbjct: 174 VIDDLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 4e-17
Identities = 33/87 (37%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Query: 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS 388
+RG+SGG+++RV+ L LF+DE ++GLDSS+ Q+++ +R+ + T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRTIICS 167
Query: 389 LLQPAPETYDLFDDIILLSDGLIVYLG 415
+ QP+ E ++LFD ++LLS G ++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---LKKQET 949
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ + E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 950 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
R+ G+ + +T E+L Y A L + + +EE+ + + + L
Sbjct: 77 RRRL-GFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDR 132
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + ++ G+
Sbjct: 133 RVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 1070 TVVCTIH 1076
++ + H
Sbjct: 188 CILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-17
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ ++ E GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1076 HQPSIDIFESFDEAI 1090
H P + D I
Sbjct: 138 HDPE-LAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQE 948
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITG-LPPHR 75
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLL--------YSAWLRLPPEVDSETRKMFI-EEIME 999
Q P +TV E++ S L P E E++E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 1000 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
V L L G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 136 FVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1060 TVKN-TVETGRTVV 1072
++ G T++
Sbjct: 191 LIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-17
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 64/276 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L D+S I+ G + LLGP +GK+TLL +AG +GR+ NG + + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAV 74
Query: 241 AA----YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
++ QH MTV + +AF + + +R +EA I+
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK------------ERPSEAEIRA------ 116
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+ L + + D +SGGQ++RV ALA
Sbjct: 117 --RVEEL-----------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQ---NIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
L +DE LD ++ +R+ +H G + + E +L D +++L+
Sbjct: 158 VLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213
Query: 409 GLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEV 444
G I +GP + V D P + VA FL EV
Sbjct: 214 GRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 66/261 (25%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G ++++ + +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 239 RV------AAYISQHDNHIGEMTVRETL--AFSARCQGVGSRFDMLTELDKRENEAGIKP 290
+ I Q N I ++V E + R S F + + +K+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ-------- 123
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLD----ICADTLVGDEMIRGISGGQKRRVT 346
+A A L+ +GL AD L SGGQ++RV
Sbjct: 124 --------RALA------------ALERVGLLDKAYQRADQL---------SGGQQQRVA 154
Query: 347 TGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-- 399
AL + DE LD +++ Q+++ +++ T ++SL Q DL
Sbjct: 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAR 209
Query: 400 --FDDIILLSDGLIVYLGPRE 418
D I+ L DG IV+ GP
Sbjct: 210 EYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 43/230 (18%)
Query: 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 924
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 925 LAGRKTGGYI--TGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979
LAG Y +GS+ + G +Q R GY Q D+ T+ +++ A
Sbjct: 50 LAGL----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA-- 102
Query: 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIA 1030
P D E I+ EL + + P GLS QR+ + +A
Sbjct: 103 ---PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152
Query: 1031 VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
L+ +P I+ +DEPTS +D + + ++ + +T++ H+PS+
Sbjct: 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-16
Identities = 63/216 (29%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISGY-L 944
D +L +S PG A++G SG+GK+TL+ +L G Y G I + G L
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDL 537
Query: 945 KK--QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR-----LPPEVDSET--RKMFIE 995
+ R GY Q+ L+S +R PE E +
Sbjct: 538 NDIDLASLRRQVGYVLQDP-----------FLFSGSIRENIALGNPEATDEEIIEAAQLA 586
Query: 996 EIMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
E +E P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD
Sbjct: 587 GAHEFIENLPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETE 645
Query: 1055 AIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI 1090
AI+++ + + GRTV+ H+ S S D I
Sbjct: 646 AIILQNLL-QILQGRTVIIIAHRLS--TIRSADRII 678
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-16
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 34/231 (14%)
Query: 859 VLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 918
V SL F V + + + L VS PG AL+G SGAGK
Sbjct: 314 VTAAPAPSLEFSGVSVA------------YPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 919 TTLMDVLAG--RKTGGYIT-GSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975
+TL+++L G T G I + ++ +++ + Q+ P + ++
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADA--DADSWRDQIAWVPQH----PFL-FAGTIAE 414
Query: 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL-VGL-----PGVSGLSTEQRKRLTI 1029
+ L P D+E I E +E L+ +L GL G +GLS Q +RL +
Sbjct: 415 NIRLARPDASDAE-----IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
A + + ++ +DEPT+ LDA A V+ + + GRTV+ H+ ++
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEAL-RALAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----YLKKQET- 949
L+G++ + G L+G SGAGK+TL+ ++ + +G+I ++G L+ +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 950 -FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R G Q+ P VYE++ EV + + + +EL L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
LP + LS +++R+ IA +V +P+I+ DEPT LD +M +K + G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1069 RTVVCTIHQPSI 1080
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-16
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 873 VYSVDMPQEMKLQGV---HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-- 927
+ P ++L+ + + +L+GVS PG A++G SG+GK+TL+ LAG
Sbjct: 327 AVGLGKPT-LELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385
Query: 928 -RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD 986
G + +S Q+ R C Q D H TV E+L + P+
Sbjct: 386 DPLQGEVTLDGVPVSSL--DQDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDAT 437
Query: 987 SETRKMFIEEIMELVELNPLRQSLV-GL-----PGVSGLSTEQRKRLTIAVELVANPSII 1040
E + +E V L ++L GL G + LS +R+RL +A L+A+ I+
Sbjct: 438 DEE----LWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 493
Query: 1041 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078
+DEPT LDA A ++ + +GRTVV H
Sbjct: 494 LLDEPTEHLDAETADELLEDL-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
I E + P +T E+L A L + I+E++++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + + G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1073 CTIHQ 1077
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-16
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 30/228 (13%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIT-ISGY 943
+ L V+ G + A++G SGAGK+TL+ L G T G I + I+
Sbjct: 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71
Query: 944 LKKQETFTRIS-GYCEQNDIHSPLVTVYESLL-----YSAWLR----LPPEVDSETRKMF 993
K+ R G Q P ++V E++L Y++ R L + E +
Sbjct: 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQA 128
Query: 994 IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
++ L + L ++ S LS Q++R+ IA LV P II DEP + LD +
Sbjct: 129 LDA---LERVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182
Query: 1054 AAIVMRTVKN-TVETGRTVVCTIHQPSIDI-FESFDEAIPGVQKIKDG 1099
A VM +K+ E G TV+ +HQ +D+ + D I +K G
Sbjct: 183 AKKVMDILKDINQEDGITVIVNLHQ--VDLAKKYADRII----GLKAG 224
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 56/252 (22%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
+ + LK VS I G ++GP SGK+TLL + G LD SG V +G +
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRP--TSGEVRVDGTD 67
Query: 232 MDEFEPQRVAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKREN 284
+ + + +AA ++ Q N + ++T E + GV + E +R
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAE 122
Query: 285 EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344
E L+ +GL + E+ SGGQ++R
Sbjct: 123 EL-----------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 345 VTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399
V ALA + DE + LDS T +++ +R+ ++ GT ++ ++ PE +
Sbjct: 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELAEY 206
Query: 400 FDDIILLSDGLI 411
D II L DG I
Sbjct: 207 ADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GSITISGYLKKQE---T 949
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 950 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
R+ +Q + L +V ++L Y A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTLDLDL-SVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-G 1068
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + V+ G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1069 RTVVCTIH 1076
+V+ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 73/277 (26%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+LKDV+ I G +LLGP GK+TLL +AG + + SG + +G ++ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 239 -RVAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
R A + Q H MTV E +AF + +GV E+DKR E
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
K+LGL+ + +SGGQ++RV AL
Sbjct: 118 ------------------------AKLLGLEHLLNRK-----PLQLSGGQRQRVALARAL 148
Query: 352 -----ALFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
+DE +SN LD+ + + I + +H GT I + E L D I++
Sbjct: 149 VRKPKVFLLDEPLSN-LDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVV 206
Query: 406 LSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFL 441
++DG I +G P EL ++ P VA F+
Sbjct: 207 MNDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 58/255 (22%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L+D+S + G +T L+GP +GK+TLL A+ G L S SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 239 RVAAYISQHDNHIGE--MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
Y+ Q + +TV++ + G F L + DK +
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLG--RYGKKGWFRRLNKKDKEK------------- 119
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+A L+ +G++ D +G+ +SGGQK+RV ALA
Sbjct: 120 VDEA---------------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 353 -LFMDEISNGLDSSTTFQIVNSI----RQNIHILNGTAVISL-LQPAPETYDLFDDIILL 406
L +DE G+D + +I + + ++ +L +++ L FD +I L
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVL----MVTHDLGLVM---AYFDRVICL 212
Query: 407 SDGLIVYLGPRELVL 421
+ LI GP E VL
Sbjct: 213 NRHLI-ASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 61/259 (23%), Positives = 99/259 (38%), Gaps = 75/259 (28%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
+ + LKDV+ I G ++GP SGK+TLL L G LD SG V NG ++ +
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDK--PTSGEVLINGKDLTK 71
Query: 235 FEPQRVAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAG 287
+ +A ++ Q+ N + ++TV E + G + + E
Sbjct: 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-----RRKRAAEEL- 125
Query: 288 IKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT 347
L+VLGL+ + + +SGGQ++RV
Sbjct: 126 ----------------------------LEVLGLE----DRLLKKKPSELSGGQQQRV-- 151
Query: 348 GPALA---------LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397
A+A + DE N LDS T +++ +R+ T ++ T+
Sbjct: 152 --AIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIMV-------TH 201
Query: 398 DL-----FDDIILLSDGLI 411
D D +I L DG I
Sbjct: 202 DPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 68/255 (26%), Positives = 104/255 (40%), Gaps = 54/255 (21%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-----D 233
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 234 EFEPQRV-AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
E R I Q N + ++V E + G S + L L +E++A
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA---- 128
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
+D + +L Y + A TL SGGQ++RV AL
Sbjct: 129 -LDAL--------ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL----FDDI 403
+ DE LD + ++++ ++ I+ +G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 404 ILLSDGLIVYLGPRE 418
I L G IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSITISGYLKKQE 948
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 949 TFTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
F R GY QN L+ TV E+L L+ E R+ +E +E V LN
Sbjct: 72 KFRREKLGYLFQN---FALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEKVGLN 125
Query: 1005 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 126 LKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 1064 TVETGRTVVCTIHQPSIDIFESFDEAI 1090
+ G+T++ H P + + D I
Sbjct: 180 LNDEGKTIIIVTHDPE--VAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GSITIS 941
+ L+ VS + + G L+G SG+GK+TL + G + T G I G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK 71
Query: 942 GYLKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
+ ++ + Q+ + S P +T+ E + + E RK + ++
Sbjct: 72 LSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLV 130
Query: 1000 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
V L + P LS QR+R+ IA L NP ++ DEPTS LD A ++
Sbjct: 131 GVGLPEEVLNR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 1060 TVKN-TVETGRTVV 1072
+K E G T++
Sbjct: 187 LLKKLQEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 28/194 (14%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GSITISGYLK----KQETFTRISG 955
+T + G SGAGK+TL+ +AG + GG I G++ K Q+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ---RKIG 78
Query: 956 YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015
Q P + V E+L + L + + E ++ ++E+++L+ L+ L
Sbjct: 79 LVFQQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----Y 128
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
+ LS +++R+ +A L A P ++ +DEP S LD ++ +K + +
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NL 181
Query: 1076 HQPSIDIFESFDEA 1089
+ P I + EA
Sbjct: 182 NIPVIFVTHDLSEA 195
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 3e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 56/191 (29%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-LKK--QE 948
+L VS +PG A++G SG+GK+TL+ +L T +G I I G L+ E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEILIDGVDLRDLDLE 72
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
+ + Y Q + L+S +R E I
Sbjct: 73 SLRKNIAYVPQ-----------DPFLFSGTIR--------------ENI----------- 96
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ ++ + G
Sbjct: 97 ----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKG 145
Query: 1069 RTVVCTIHQPS 1079
+TV+ H+ S
Sbjct: 146 KTVIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 49/250 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L DV+ + GS+ LLGP SGK+TLL +AG L+ SGR+ NG + +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 239 -RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
R ++ QH +TVR+ +AF E+ K
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
+KA E L+++ L +GD +SGGQ++RV ALA
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L +DE LD+ ++ + +R+ ++ T V + E ++ D I+++S+G I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 413 YLGPRELVLD 422
+G + V D
Sbjct: 211 QIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 55/259 (21%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-- 237
LKDVS I G LL+GP SGK+TLL L G L + SG V +G + +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 238 ---QRVAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
Q+V + Q+ D+ + TV + +AF G+ E+++R EA
Sbjct: 76 ELRQKV-GLVFQNPDDQLFGPTVEDEVAFGLENLGLP-----REEIEERVAEA------- 122
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L+++GL+ D +SGGQK+RV LA
Sbjct: 123 ----------------------LELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAM 155
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
L +DE + GLD +++ +++ + G +I + + D +++L D
Sbjct: 156 GPEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 409 GLIVYLGPRELVLDFFESM 427
G I+ G + + E +
Sbjct: 215 GKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 38/183 (20%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQETFT 951
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 952 RIS-----GYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
+ G Q P ++Y+++ Y L K ++E +E
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG------IKLKEELDERVE---- 121
Query: 1004 NPLRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
++L L GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 122 ----EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 1055 AIV 1057
A +
Sbjct: 178 AKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 878 MPQEMKLQ--GVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 930
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 931 GGYITGSITISGY-------LKKQETFTRISGYCEQNDIHSPL---VTVYESLLYSAWLR 980
G I I G + E R+ G Q L +TV+E++ + LR
Sbjct: 62 ----KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQ---QGALFSSLTVFENVAFP--LR 111
Query: 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELV 1034
E K+ I ELV + LVGL G S LS RKR+ +A +
Sbjct: 112 -------EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIA 161
Query: 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQ 1077
+P ++F+DEPTSGLD +A ++ ++ + G TV+ H
Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 1e-14
Identities = 72/275 (26%), Positives = 101/275 (36%), Gaps = 93/275 (33%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T+L DVS +RPG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 239 RVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 296 VFMKAA--ATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV-------- 345
V M A E + L L + L A +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQ 151
Query: 346 ---TTGPALALFMDE-ISNGLDSSTTFQIVNSIRQNIHIL---------NGTAVISLLQP 392
GP L +DE S LD + H+L G AVI +L
Sbjct: 152 LWEPDGPPRWLLLDEPTSA-LD----------LAHQHHVLRLARQLAHERGLAVIVVL-- 198
Query: 393 APETYDL------FDDIILLSDGLIVYLGPRELVL 421
+DL D I+LL G +V G VL
Sbjct: 199 ----HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 69/253 (27%), Positives = 98/253 (38%), Gaps = 57/253 (22%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN---MDEF 235
T+LK V +R G + ++GP SGK+TLL + G L SG V +G + + E
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 236 EPQRVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
E R+ + Q +TV E +AF R T L + E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 293 DID--VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
I V K L+ +GL D + +SGG K+RV A
Sbjct: 113 -IREIVLEK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRVALARA 150
Query: 351 LAL-----FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
LAL DE + GLD + I + IR ++ G I + + + D I +
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIR-SLKKELGLTSIMVTHDLDTAFAIADRIAV 209
Query: 406 LSDGLIVYLGPRE 418
L DG IV G E
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-14
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 27/182 (14%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---------TGSITISGY 943
++ VS R G L+G SG+GK+TL +LAG + G I TG
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 944 LKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+ Q F Q+ S P +TV + L LR+ R+ + E++ELV
Sbjct: 367 RRIQMVF--------QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELV 416
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
L P + L P LS QR+R+ IA L P ++ +DEP S LD A V+ +
Sbjct: 417 GLPP--EFLDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL 472
Query: 1062 KN 1063
K+
Sbjct: 473 KD 474
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 50/254 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L VS +RPG + +LGP +GK+TLL AL+G+L SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
+A H + +LAF Q V ++ + + +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA------ 352
+A A TD + GL R +SGG+++RV LA
Sbjct: 118 QALA--------ATD----LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
LF+DE ++ LD + + RQ G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 408 DGLIVYLGPRELVL 421
G ++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 23/194 (11%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY- 943
K +L GVS G + AL+G +GAGKTTL+ + G GSI G
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS----GSIRFDGRD 63
Query: 944 LKKQETFTRIS---GYCEQN-DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
+ R GY + I L TV E+LL A+ R + + +E + E
Sbjct: 64 ITGLPPHERARAGIGYVPEGRRIFPEL-TVEENLLLGAYARRRAKRKAR-----LERVYE 117
Query: 1000 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
L L R+ L G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 118 LFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172
Query: 1059 RTVKNTVETGRTVV 1072
++ + G T++
Sbjct: 173 EAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 35/211 (16%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETF 950
VL +G+S G L G +G+GKTTL+ ++AG G +I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDG---GDIDD 68
Query: 951 TRISGYC----EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
++ C +N + L TV E+L + A E+D I +E V L PL
Sbjct: 69 PDVAEACHYLGHRNAMKPAL-TVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL 120
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ ++ +
Sbjct: 121 ----AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175
Query: 1067 TGRTVVCTIHQPSIDIFESFDEAIPGVQKIK 1097
G V+ H P +PG +++
Sbjct: 176 QGGIVIAATHIP---------LGLPGARELD 197
|
Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-14
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 21/164 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISG----YLKKQE 948
L V+ G L+G SG GK+TL+ ++AG T G I I G L ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL----IDGRDVTDLPPEK 74
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R QN P +TVYE++ + LR P+ + + R ++E+ +L+ L L
Sbjct: 75 ---RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLN 128
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 129 RKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 69/259 (26%), Positives = 103/259 (39%), Gaps = 64/259 (24%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHN-----M 232
LKD+S I G +T L+GP GK+TLL L L G V +G + +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
D E +R + Q N ++ + +A+ R G+ + ELD+R EA
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGL-DICADTLVGDEMIRGISGGQKRRVTTGPAL 351
L+ L D D L G+SGGQ++R+ AL
Sbjct: 124 -----------------------LRKAALWDEVKDRLHA----LGLSGGQQQRLCLARAL 156
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI---SLLQPAPETYDLFD 401
A L +DE ++ LD +T +I I + L T VI ++ Q A + D
Sbjct: 157 ANEPEVLLLDEPTSALDPISTAKIEELIAE----LKKEYTIVIVTHNMQQAA----RVAD 208
Query: 402 DIILLSDGLIVYLGPRELV 420
L +G +V GP E +
Sbjct: 209 RTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 883 KLQGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GS 937
+++ +H E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G
Sbjct: 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGE 62
Query: 938 ITISG----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW--LRLPPEVDSETRK 991
I G L E Q + P VT L +A R + E K
Sbjct: 63 ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTN-SDFLRAAMNARRGARGILPEFIK 121
Query: 992 MFIEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
++E EL+ L+ L + + G S ++KR I L+ P + +DEP SGL
Sbjct: 122 -ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
D A IV + E GR V+ H +
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 51/190 (26%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQETF 950
+L VS + PG A++G SG+GK+TL ++ G R T G + IS + +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--L 74
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
GY Q+D ++F I E +
Sbjct: 75 GDHVGYLPQDD-----------------------------ELFSGSIAENI--------- 96
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
LS QR+RL +A L NP I+ +DEP S LD + + + G T
Sbjct: 97 --------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 1071 VVCTIHQPSI 1080
+ H+P
Sbjct: 149 RIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITI 940
+ G + LN VS G ++G SG+GK+TL +LAG + + +GSI +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 941 SG--YLKKQET--FTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFI 994
G K+ F R Q+ S P TV L S LR S+ R I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---I 121
Query: 995 EEIMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
LT + DVS +RPG + L+GP +GKTTL + G S SG V + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 238 QRVAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
R+A I+ Q +TV E +A A + S
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGL-------------------- 113
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ A E +EA L+ +GL AD G+ +S GQ+RR+ ALA
Sbjct: 114 --LGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIR 375
L +DE + GL+ T ++ IR
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIR 193
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISG 942
++++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G
Sbjct: 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG 67
Query: 943 YLKKQETFTRISGYCEQNDIHSPLVTVYESLLY------SAWLRLPPEVDSETRKMFIEE 996
L ++ R++ + +D PL TV + + S W P + +
Sbjct: 68 -LSRRARARRVALVEQDSDTAVPL-TVRDVVALGRIPHRSLWAGDSPHDAAVVDRA---- 121
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
+ EL+ L +S LS +R+R+ +A L P ++ +DEPT+ LD RA
Sbjct: 122 -LARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175
Query: 1057 VMRTVKNTVETGRTVVCTIH 1076
+ V+ TG TVV +H
Sbjct: 176 TLALVRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 15/200 (7%)
Query: 881 EMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSI 938
E + + L + +S G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 939 TISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIM 998
+E++ + Y +T E+L + W R ++ T I E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 999 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
V L L LP V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 1059 RTVKNTVETGRTVVCTIHQP 1078
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 68/248 (27%), Positives = 92/248 (37%), Gaps = 57/248 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
++DVS G +T LLG +GKTTLL +A L SG+VT +G + +P V
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVR-DPSFV 73
Query: 241 AAYISQHDNHIG---EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
I G +T RE L + AR + + K I
Sbjct: 74 RRKIGVLFGERGLYARLTARENLKYFARL------NGLSRKEIKAR----------IAEL 117
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
K L L D VG S G K++V AL
Sbjct: 118 SKR------------------LQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSI 154
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE ++GLD T + + I+Q L G AVI E L D +I+L G
Sbjct: 155 LVLDEPTSGLDIRTRRKFHDFIKQ----LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210
Query: 411 IVYLGPRE 418
+V G E
Sbjct: 211 VVLEGSIE 218
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 2e-13
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 41/208 (19%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
L L DVS +RPG + L+GP +GKTTL ++G L + SG V ++G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 238 QRVAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+A I Q E+TV E + +A+ + GS
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQART-GSGL-------------------- 108
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ A E +EA + L+ +GL AD G+ +S GQ+RR+ ALA
Sbjct: 109 ---LLARARREEREARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
L +DE + GL+ T ++ IR+
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 35/209 (16%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ 947
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
GY Q D P +TV +++ L E+ +++ E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 1008 QSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1063 NTV-ETGRTVVCTIHQPSIDIFESFDEAI 1090
ET +TV+ H DEA+
Sbjct: 175 RLWEETRKTVLLVTH--------DVDEAV 195
|
Length = 248 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 94/254 (37%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
LKD++ + G + ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------S 67
Query: 240 VAAYISQ---HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP---DPD 293
+ AY+SQ N T+RE + F G FD +R + IK +PD
Sbjct: 68 I-AYVSQEPWIQN----GTIRENILF-------GKPFDE-----ERYEKV-IKACALEPD 109
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPAL 351
+++ TE +G+ +GI SGGQK+R+ +L
Sbjct: 110 LEILPDGDLTE------------------------IGE---KGINLSGGQKQRI----SL 138
Query: 352 A---------LFMDEISNGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPE 395
A +D+ + +D+ I + I +LN I LL A
Sbjct: 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILG--LLLNNKTRILVTHQLQLLPHA-- 194
Query: 396 TYDLFDDIILLSDG 409
D I++L +G
Sbjct: 195 -----DQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 878 MPQEMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 933
++++ V + ++ +S + G L+G SG GKTTL+ ++AG + + G
Sbjct: 2 PKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 934 IT-GSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKM 992
I I+ + ++ R G Q+ P +TV E++ + L++ ++ K
Sbjct: 62 ILLDGEDITD-VPPEK---RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKA 115
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+EE +ELV L LS Q++R+ +A LV P ++ +DEP S LDA+
Sbjct: 116 RVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1053 AAAIVMRTVKN-TVETGRTVVCTIH 1076
+ + +K E G T V H
Sbjct: 171 LREQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSITISGY---L 944
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+ L
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME----- 999
R G Q E++L++ +R + M +E ++E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 1000 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1055 AIVMRTVKNTVETGRTVVCTIHQPS 1079
+MR + + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHD-ICAGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 64/204 (31%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L +S + G AL+G SG GK+TL+ ++AG R T G + + G R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
GY Q D P +TV +++ L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 1013 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-E 1066
L G LS R+R+ +A L +P ++ +DEP S LDA + + + E
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1067 TGRTVVCTIHQPSIDIFESFDEAI 1090
TG+TV+ H DI DEA+
Sbjct: 181 TGKTVLLVTH----DI----DEAV 196
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-13
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS------GY 956
RPG L+GV+GAGKTT +L G T +G T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE--LNPLRQSLVGLP 1014
C Q D L+T E L A LR P EEI ++ + L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPA----------EEIEKVANWSIQSLGLSLYADR 2066
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T
Sbjct: 2067 LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126
Query: 1075 IH 1076
H
Sbjct: 2127 SH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 15/190 (7%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQE 948
DKLV+ +G+S + G L+G +GAGKTT + +L G GSI++ G + +
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 949 TFTRIS-GYCEQNDIHSPLVTVYESLL-YSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R G Q D P TV E+LL + + L + R + + ++E +L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENK 131
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +++ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1067 TGRTVVCTIH 1076
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 3e-13
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQETFTRIS 954
VS G + L+G +GAGKTT ++ G R G I IS L R
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS-LLPLHARARRGI 80
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
GY Q ++VY++L+ A L++ ++ +E R+ E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
G S LS +R+R+ IA L ANP I +DEP +G+D + + R +++ ++G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1075 IH--QPSIDIFE 1084
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 17/191 (8%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQE 948
DK V+ NG+S G L+G +GAGK+T+ ++ G + G IT+ G + +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 949 TFTRIS-GYCEQNDIHSPLVTVYESLL-YSAWLRLPPEVDSETRKMFIEEIM-ELVELNP 1005
R G Q D TV E+LL + + + TR+ IE ++ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFAR 161
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
L +S VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +++ +
Sbjct: 162 L-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1066 ETGRTVVCTIH 1076
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL----KKQE 948
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP---PEVDSETRKMFIEEIMELVELNP 1005
++S ++N I+S L TV + + + R P + E R++ I E +E + L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLED 127
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
L + LS QR+R IA+ L + + +DEP + LD + + +M+ ++
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1066 -ETGRTVVCTIH 1076
E G+T+V +H
Sbjct: 183 DELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GSITISG--YLKKQ 947
+L+G+ +PG + A++G SG+GKTTL+ L + G I G ITI L +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 948 ETFTRI----SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
+ R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 1004 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1059 RTVKNTVETGRTVVCTIHQPS 1079
T++ + RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-13
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G K F
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDG---KPVAF-- 74
Query: 953 ISGYCEQND-----IH-----SPLVTVYESLLYSAWLRLP-PEVDSETRKMFIE--EIME 999
S + +H P ++V E++ +D + M E++
Sbjct: 75 -SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 1000 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1059 RTVKNTVETGRTVV 1072
++ G ++
Sbjct: 186 DLIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 25/190 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSITISGY--LKKQET 949
L+ VS + G + +G +GAGK+T M ++ G Y+ +GS+ + G L+ +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 950 FTRISGYCEQNDIHSPL---VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R GY + H+PL + V E L + A + + + K +EE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD + +KN +
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN-IG 180
Query: 1067 TGRTVVCTIH 1076
+T++ + H
Sbjct: 181 KDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
L D+S + PG LLGP GKTTLL +AG SG + +G ++ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+R + Q +TV E +AF + +GV E+ R E
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
L+++GL+ + + +SGGQ++RV ALA
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 353 LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L +DE +S LD+ ++ +++ L T + E L D I ++++G I
Sbjct: 152 LLLDEPLSA-LDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRI 209
Query: 412 V 412
V
Sbjct: 210 V 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ 947
+ +L G+S G + G +G GKTTL+ +LAG R G + + T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA--EQR 68
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
LS Q++RL +A ++ + +DEPT+ LD A++ ++ +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1068 GRTVVCTIHQP 1078
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYL---KKQET 949
L G+S G + +G +GAGKTT + +L+G + T G + ++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 950 FTRISGYCEQNDIHSPLVTVYESL-LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
RI Q + V +S L +A LPP + +E+ EL++L L
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLD 148
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ET 1067
+ P V LS QR R IA L+ P I+F+DEPT GLD A + +K E
Sbjct: 149 T----P-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 1068 GRTVVCTIH 1076
G TV+ T H
Sbjct: 204 GTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 67/250 (26%), Positives = 97/250 (38%), Gaps = 66/250 (26%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
KK IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKA 66
Query: 235 FEPQRVAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E ++ Y+ Q D + +VRE L + ELD +A
Sbjct: 67 KERRKSIGYVMQDVDYQLFTDSVREELLLGLK------------ELDAGNEQA------- 107
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ LK L L + +SGGQK+R+ AL
Sbjct: 108 -------------------ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLS 143
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-F-----DD 402
L DE ++GLD ++ IR+ G AVI + T+D F D
Sbjct: 144 GKDLLIFDEPTSGLDYKNMERVGELIRE--LAAQGKAVIVI------THDYEFLAKVCDR 195
Query: 403 IILLSDGLIV 412
++LL++G IV
Sbjct: 196 VLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-13
Identities = 66/256 (25%), Positives = 100/256 (39%), Gaps = 60/256 (23%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM------ 232
LK+++ I PG ++GP +GK+TLL + ++ S SG + G ++
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETL--AFSARCQGVGSRFDMLTELDKRENEAGIKP 290
+ +R I QH N I +TV E + S +E DK
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER------- 125
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
A E L D + AD L SGGQ++RV A
Sbjct: 126 -----------ALSALERVGLADKAYQR------ADQL---------SGGQQQRVAIARA 159
Query: 351 LA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNG-TAVISLLQPAPETYDL----F 400
LA + DE LD T+ Q+++ ++ I+ +G T +I+L Q DL
Sbjct: 160 LAQQPDLILADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQ-----VDLAKKYA 213
Query: 401 DDIILLSDGLIVYLGP 416
D I+ L G IV+ G
Sbjct: 214 DRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 9e-13
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 38/219 (17%)
Query: 883 KLQGV-------HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 935
+L+ V + L+ VS G + ++G SGAGK+TL+ ++ + +
Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTS 60
Query: 936 GSITISGY----LKKQE--TFTRISGYCEQ--NDIHSPLVTVYESLLYSAWLRLPPEVDS 987
GS+ + G L + E + G Q N + S TV+E++ + P E+
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAG 112
Query: 988 ETRKMFIEEIMELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFM 1042
+ + + EL+EL VGL + LS Q++R+ IA L NP I+
Sbjct: 113 VPKAEIKQRVAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165
Query: 1043 DEPTSGLD-ARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
DE TS LD +I+ E G T+V H+ +
Sbjct: 166 DEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV 204
|
Length = 339 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 64/253 (25%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L DVS +RPG LLGP +GK+TL L + G+++ GH++ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 241 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
A + Q +++VR+ L + A G+
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA------------------------- 107
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----A 352
EA L LGL A+ D+ +R ++GG +RRV AL
Sbjct: 108 ---------EARARIAELLARLGL---AERA--DDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 353 LFMDEISNGLDSSTTFQIVNSIR-----QNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
L +DE + GLD ++ I +R Q + +L T ++ ++ D +++L
Sbjct: 154 LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLH 206
Query: 408 DGLIVYLG-PREL 419
G ++ G EL
Sbjct: 207 RGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 1e-12
Identities = 59/258 (22%), Positives = 89/258 (34%), Gaps = 62/258 (24%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
IL VS + G + LLG +GKTTLL + G L SG + ++G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 238 QRVA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
A Y+ + E+TV E L A A K +
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAY----------------ARRRAKRKARLE 113
Query: 294 --IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
++F + Q A L SGG+++ + AL
Sbjct: 114 RVYELFPRLKERRKQLAGTL--------------------------SGGEQQMLAIARAL 147
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDII 404
L +DE S GL IV I + I L G ++ + Q A ++ D
Sbjct: 148 MSRPKLLLLDEPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAY 203
Query: 405 LLSDGLIVYLGPRELVLD 422
+L G +V G +L
Sbjct: 204 VLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 65/251 (25%), Positives = 94/251 (37%), Gaps = 48/251 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEF 235
I+ V PGS+T LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
A + + D L L AD + +SGG+++RV ALA
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE +N LD + + +R+ G V++ L D +++L G
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 411 IVYLGPRELVL 421
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-12
Identities = 58/254 (22%), Positives = 93/254 (36%), Gaps = 62/254 (24%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
+ L+ VS + G + LLG +GKTTLL + G + SGR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 237 PQRVA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
P A AY+ + +TV E L L R ++ + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENL---------------LLGAYARRDKEAQERDL 116
Query: 293 DI--DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
+ ++F + Q A L SGG+++ + A
Sbjct: 117 EEVYELFPRLKERRNQRAGTL--------------------------SGGEQQMLAIARA 150
Query: 351 LA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDD 402
L L +DE S GL IV I + I L +++L Q A ++ D
Sbjct: 151 LMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADR 206
Query: 403 IILLSDGLIVYLGP 416
+L +G IV G
Sbjct: 207 GYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 20/189 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-LKKQETFT 951
+NGVS + + G + L+G +GAGKTT ++ G + G I + G + K
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG----KILLDGQDITKLPMHK 71
Query: 952 RIS---GYCEQN-DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
R GY Q I L TV E++L +R + + R+ +EE++E + LR
Sbjct: 72 RARLGIGYLPQEASIFRKL-TVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLR 127
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+S S LS +R+R+ IA L NP + +DEP +G+D A + + +K +
Sbjct: 128 KSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 1068 GRTVVCTIH 1076
G V+ T H
Sbjct: 183 GIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-12
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 58/251 (23%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ- 238
+L+D+S I PG ++G SGK+TLL L G GR+ +G ++++ +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 239 --RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
++AA Q A + L + DT VG E +SGGQ++R+ ALA
Sbjct: 579 IIEAA----QLAGAHEF----IENLPMGYDTPVG-EGGANLSGGQRQRL----ALARALL 625
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
L +DE ++ LD T I+ ++ Q IL G VI ++ T D II+L
Sbjct: 626 SKPKILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLD 681
Query: 408 DGLIVYLGPRE 418
G IV G E
Sbjct: 682 QGKIVEQGSHE 692
|
Length = 709 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT-RI 953
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
G+ Q+ +TV +++ + +R P K +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDR---Y 127
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
P + LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 46/246 (18%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-R 239
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G + + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
++ QH MTV + +AF R + R E+ + +E
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPE-AEIRAKVHE-------------- 119
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LF 354
LK++ LD AD +SGGQ++RV ALA L
Sbjct: 120 ---------------LLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 355 MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYL 414
+DE LD+ ++ +R+ L+ T V + E ++ D +++++ G I +
Sbjct: 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 415 G-PREL 419
G P E+
Sbjct: 219 GTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISG-YLKKQ--ET 949
L G+S PG AL+G SG GK+T++ +L R Y +G I + G ++
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLDGVDIRDLNLRW 74
Query: 950 FTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELNP 1005
G Q P++ T+ E++ Y EV+ +K I + IM L P
Sbjct: 75 LRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL----P 126
Query: 1006 LR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
+LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V + +
Sbjct: 127 DGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL-DR 184
Query: 1065 VETGRTVVCTIH 1076
GRT + H
Sbjct: 185 AMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 44/206 (21%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITG----SITISGYLKK 946
L ++ + +PG A++G +GAGKTTL+++L G I G I+
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78
Query: 947 -----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
Q+TF SG T+ E++ + E +
Sbjct: 79 IGVVLQDTFL-FSG------------TIMENIRLG---------RPNATDEEVIEAAKEA 116
Query: 1002 ELNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
+ L +G LS +R+ L IA ++ +P I+ +DE TS +D
Sbjct: 117 GAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 1055 AIVMRTVKNTVETGRTVVCTIHQPSI 1080
++ ++ ++ GRT + H+ S
Sbjct: 176 KLIQEALEKLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 3e-12
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSITISGYLKKQ--- 947
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 948 ETFTRISGYCEQNDIHSPLV---TVYE--SLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
R Q HS L TV E ++ + E D+ + + V+
Sbjct: 72 AELARRRAVLPQ---HSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVD 123
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAI 1056
L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 1057 VMRTVKN-TVETGRTVVCTIH 1076
V+R + E G V+ +H
Sbjct: 179 VLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 21/166 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----YLKKQETF 950
L+ VS G L AL+G SG+GKTTL+ ++AG + +G+I G + QE
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPVQE-- 73
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLR----LPPEVDSETRKMFIEEIMELVELNPL 1006
R G+ Q+ +TV++++ + ++ PPE + + + E+++LV+L+ L
Sbjct: 74 -RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK---VHELLKLVQLDWL 129
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
P + LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 130 ADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 904 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSITISGYLKKQETFT----RIS 954
PG +TA+ G SG+GKTTL+ ++AG R G + G ++ F R
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDS---RKGIFLPPEKRRI 77
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
GY Q P ++V +L Y R++ E ++EL+ + L L G
Sbjct: 78 GYVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG-- 130
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 ---RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 58/251 (23%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS----SLKVSGRVTYNG 229
+K +L D++ I PG + +L GP SGKTT LL L G L S SLKV G+ Y
Sbjct: 16 LRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGA 72
Query: 230 HNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
+ + +R YI Q N +G +T R Q V M EL
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTAR---------QNV----QMALEL---------- 109
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM---IRGISGGQKRRVT 346
QEA L+ +GL GD + +SGGQK+RV
Sbjct: 110 ----------QPNLSYQEARERARAMLEAVGL--------GDHLDYYPHNLSGGQKQRVA 151
Query: 347 TGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401
AL + DE + LDS + +V +++ G ++ ++ D+ D
Sbjct: 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVAD 209
Query: 402 DIILLSDGLIV 412
I+ + DG ++
Sbjct: 210 RIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL---KKQETF 950
LL+GVS RPG + A++G +GAGK+TL+ L+G + +G +T++G E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRK--MFIEEIMELVELNPLRQ 1008
R QN + TV E + R+P E + + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLAG 130
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
LS +++R+ +A L V + +F+DEPTS LD +R +
Sbjct: 131 RD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 1063 NTVETGRTVVCTIH 1076
G V+ +H
Sbjct: 186 QLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT------GSITISGYLK 945
+L +S PG A++G +GAGKTTL+ +L G + G +T G L+
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 946 KQETFTRISGYC--EQNDIHSPLVTVYESLL--YSAWLRLPPEVDSETRKMFIEEIMELV 1001
K RI G E ++ TV + +L + A + + E + + ++EL+
Sbjct: 106 K-----RI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
L G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 160 GAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214
Query: 1062 --KNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQK---IKDG 1099
++ H +E P +K+G
Sbjct: 215 EELAASPGAPALLFVTHHA--------EEIPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 5e-12
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 18/217 (8%)
Query: 880 QEMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 935
+++ V + L+ +S + G L AL+G SGAGK+TL+ ++AG G I
Sbjct: 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 936 GSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL--PPEVDSETRKMF 993
+ + + R G+ Q+ P +TV +++ + +R P E + R
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR--- 117
Query: 994 IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
+EE++ LV+L L P + LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 118 VEELLRLVQLEGLADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 1054 AAIVMRTVKNTV--ETGRTVVCTIHQPSIDIFESFDE 1088
+R + G T V H + E D
Sbjct: 173 RK-ELRRWLRKLHDRLGVTTVFVTHDQE-EALELADR 207
|
Length = 345 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-12
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQET 949
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + +E
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--------RVDGKEV 68
Query: 950 FTRISGYCEQNDI-----HSPLV---TVYESLLYSAWLRLPPEVD-SETRKMFIEEIMEL 1000
+ + I H LV TV E+++ +D + R I+E+ E
Sbjct: 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IKELSER 127
Query: 1001 --VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
+ ++P + V+ LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 128 YGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180
Query: 1059 RTVKNTVETGRTVV 1072
++ G+T++
Sbjct: 181 EILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 21/188 (11%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGSITISGYLKKQETF 950
L+ +S + G + L+G +GAGKTT + ++ G I +G + G
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLR-LPPEVDSETRKMFIEEIMELVELNPLRQS 1009
RI GY + P + V + L+Y A L+ L E E R+ I+E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
V LS ++++ ++ +P ++ +DEP SGLD ++ ++ G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1070 TVVCTIHQ 1077
TV+ + HQ
Sbjct: 180 TVILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-12
Identities = 71/282 (25%), Positives = 112/282 (39%), Gaps = 82/282 (29%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
T + D+S I+ G LLGP GKTTLL +AG S SG + +G ++ + P
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 238 QRVAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+R + Q H MTV E +AF + + + E+ R EA
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLKVRKKLKK----AEIKARVEEA----- 120
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
L+++GL+ D +SGGQ++RV AL
Sbjct: 121 ------------------------LELVGLE-----GFADRKPHQLSGGQQQRVALARAL 151
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LF 400
L +DE + LD+ Q+ +++ L T V T+D +
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEALAMS 204
Query: 401 DDIILLSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFL 441
D I +++DG I +G P E+ ++ P + VADF+
Sbjct: 205 DRIAVMNDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 7e-12
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--- 947
K L G+S + + G A++G SG+GK+TL ++ G +GS+ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
ETF + GY Q D+ TV E++ R D E +I+E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 1008 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1059 RTVKNTVETGRTVVCTIHQPSI 1080
+K G TVV H+PS+
Sbjct: 495 NAIKALKARGITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 909 ALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----LKKQETFTRISGYCEQNDIHS 964
++G +G+GK+ L++ +AG +G I ++G L ++ R Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEK---RDISYVPQNYALF 83
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEE---IMELVELNPLRQSLVGLPGVSGLST 1021
P +TVY+++ Y R + + E + + I E I L+ P LS
Sbjct: 84 PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSG 132
Query: 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID 1081
+++R+ IA LV NP I+ +DEP S LD R + +K + V +H
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH----- 185
Query: 1082 IFESFDEA 1089
+ F+EA
Sbjct: 186 VTHDFEEA 193
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 1e-11
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--D 233
T L D+S + G + LLGP +GKTTL+ + G L SG + G ++ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFS 263
E +R Y+ + + +TVRE L S
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 54/236 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP--- 237
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ A++ QH + T+ E + + +PD
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA-------------------------RPD------ 422
Query: 298 MKAAATEGQEANVLT--DYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
A+ E +EA D ++ L + DT +G+ G+SGGQ +R+ A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGL--DTPIGEGG-AGLSGGQAQRLALARAFLRDA 477
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406
L +DE + LD+ T +++ ++R + G V+ L+ L D I++L
Sbjct: 478 PLLLLDEPTAHLDAETEAEVLEALRA---LAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+ ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
I E ++ L T E+L L P DS I+E++ +V+L G
Sbjct: 72 IGSLIESPPLYENL-TARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
S ++RL IA+ L+ +P ++ +DEPT+GLD + +++ E G TV+
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 1073 CTIH 1076
+ H
Sbjct: 179 LSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 919 TTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS----GYCEQNDIHSPLVTVYESLL 974
+TL+ ++ G +G+I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1034
+ + EE +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1035 ANPSIIFMDEPTS 1047
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 58/275 (21%)
Query: 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-----LKVSG 223
L ++H IL+D+S I PG +T LLG +GK+TLL ALAG L +V+G
Sbjct: 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 224 RVTYNGHNMDEFEPQRVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELD 280
VT NG + + R+A A + Q + AFSAR + R+
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY------- 109
Query: 281 KRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGG 340
AG D ++ +A A G A LVG + + +SGG
Sbjct: 110 PHARRAGALTHRDGEIAWQALALAG-------------------ATALVGRD-VTTLSGG 149
Query: 341 QKRRVTTGPALA--------------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAV 386
+ RV LA L +DE + LD + ++++++R+ N V
Sbjct: 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGV 208
Query: 387 ISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421
++++ D I +L+DG IV G VL
Sbjct: 209 LAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-11
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFT 951
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+ L
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
R QN P + V +++ + + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GR 1069
LP + LS ++R+ IA + P ++ +DEP S LDA A + + E
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1070 TVVCTIH 1076
T++C H
Sbjct: 191 TILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSITISGY-LKKQETFT 951
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
R G Q+ + P ++V ++LL++ LP + R+ +E L+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-- 130
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 131 -DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 53/249 (21%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
KK + + VS ++PG +T LLGP +GKTT L LAG L+ +G T +G ++ +
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 235 FEPQRVAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
EP + + G +T RE L + A G+
Sbjct: 72 -EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------- 108
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
+G E + LG++ D VG G S G +++V AL
Sbjct: 109 ------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406
L +DE + GLD T + IRQ + G ++ E L D +++L
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVL 209
Query: 407 SDGLIVYLG 415
G +VY G
Sbjct: 210 HRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ- 238
+LKDVS I+PG ++GP SGK+TLL L D + SG + +G ++ + + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 239 --RVAAYISQHDNHIGEMTVRE 258
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 61/218 (27%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+ +S + G +L GP SGKTTLL +AG L +G + +G ++D+ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
Y+ + +TV E L F A G E I
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------GEELDI---------- 108
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALALFM--- 355
AAA L+ +GL A G +S GQKRRV ALA +
Sbjct: 109 -AAA-------------LEAVGLAPLAHLPFGY-----LSAGQKRRV----ALARLLVSN 145
Query: 356 ------DEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
DE + LD++ IR H+ G VI
Sbjct: 146 RPIWILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 68/268 (25%), Positives = 100/268 (37%), Gaps = 67/268 (25%)
Query: 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232
T +T L DVS I G + ++G +GK+TLL + L+ SG V +G ++
Sbjct: 14 TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDL 70
Query: 233 DEF--EPQRVA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEA 286
R I QH N + TV E +AF GV E+ +R E
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK-----AEIKQRVAEL 125
Query: 287 ----GIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQK 342
G+ D KA Q +SGGQK
Sbjct: 126 LELVGL-SD-------KADRYPAQ------------------------------LSGGQK 147
Query: 343 RRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE-T 396
+RV ALA L DE ++ LD TT I+ ++ I+ G ++ L+ E
Sbjct: 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKD-INRELGLTIV-LITHEMEVV 205
Query: 397 YDLFDDIILLSDGLIVYLGPRELVLDFF 424
+ D + +L G +V G V + F
Sbjct: 206 KRICDRVAVLDQGRLVEEGT---VSEVF 230
|
Length = 339 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY- 943
K+ L GVS G + AL+G +GAGKTTL+ + G R +G I G
Sbjct: 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGED 66
Query: 944 LKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
+ R Y + P +TV E+LL A+ R D E ++ +EE+ EL
Sbjct: 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYEL 122
Query: 1001 V-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
L R G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 123 FPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 1060 TVKNTV-ETGRTVV 1072
+K E G T++
Sbjct: 178 AIKELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 56/198 (28%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
LN +S PG L ++G +GAGKTT+MDV+ G R GS+ G T
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD----EGSVLFGG--------TD 65
Query: 953 ISGYCEQNDIH--------SPLV----TVYESLLYSA----------WLRLPPEVDSETR 990
++G E P V TV+E+L + + RL E
Sbjct: 66 LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-- 123
Query: 991 KMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
IEE++E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 124 ---IEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM- 174
Query: 1051 ARAAAIVMRTVKNTVETG 1068
T + T +T
Sbjct: 175 ---------TDEETEKTA 183
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 25/169 (14%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSITISGYLKKQETF 950
LN +S + PG L L+G +GAGKTTLMDV+ G R G G ++ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK--LPEHRI 78
Query: 951 TRISGYCEQNDIHSPLV----TVYESLLY------SAWLRLPPEVDSETRKMFIEEIMEL 1000
R G + P V TV E+L S + L + +E R+ I+E++
Sbjct: 79 ARA-GIGRK--FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLAT 134
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
+ L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 879 PQEMKLQGVHE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 935
+ L GV + DK V++N +S G L+G +GAGK+T+ +L G +
Sbjct: 2 NVAIDLVGVSKSYGDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--R 58
Query: 936 GSITISGY-LKKQETFTRIS-GYCEQNDIHSPLVTVYESLL-YSAWLRLPPEVDSETRKM 992
G IT+ G + + R++ G Q D P TV E+LL + + + TR+
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE- 111
Query: 993 FIEEIM-ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
IE ++ L+E L +S + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD
Sbjct: 112 -IEAVIPSLLEFARL-ESKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 1052 RAAAIVMRTVKNTVETGRTVVCTIH 1076
A ++ +++ + G+T++ T H
Sbjct: 169 HARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
L VS G L ++G SG GKTTL++++AG T GSI ++G ++ E
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNG--RRIEGPGAE 75
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVG 1012
G QN+ P + V +++ + LR ++ R+ +++ LV L + +
Sbjct: 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 860 LPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 919
L S+ F+ V +S + K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFS------------YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 920 TLMDVLAGRKTGGYITGSITISGYLKKQETFT---RISGYCEQNDIHSPL--VTVYESLL 974
TL+ +L +G I I G + + + G Q+ L T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQD---PLLFSGTIRENIA 424
Query: 975 YSAWLRLPPEVDSETRKMFIEE-IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1033
E++ + E I L + ++VG GV LS QR+RL IA L
Sbjct: 425 LGRPDATDEEIEEALKLANAHEFIANLPDGY---DTIVGERGV-NLSGGQRQRLAIARAL 480
Query: 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+ NP I+ +DE TS LD A++ +K ++ GRT + H+ S
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY----LKKQE 948
L VS G L G SGAGK+TL+ ++ G R T G I ++G+ LK +E
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGRE 73
Query: 949 T-FTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
F R G Q+ P TVYE++ LP V + + + E+++L L
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGL 127
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+ LP S LS +++R+ IA +V P+++ DEPT LD + +MR +
Sbjct: 128 KHKARALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185
Query: 1067 TGRTVVCTIH 1076
G TV+ H
Sbjct: 186 LGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 54/199 (27%), Positives = 75/199 (37%), Gaps = 56/199 (28%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH--- 230
KK L VS + PG M LLGP +GKTTL+ LA S SG + +G
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 231 -NMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
+ +R Y+ Q TVRE L + A +G+ S+ E+ R
Sbjct: 65 KQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK-----EVKAR------- 110
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
D L+++ L + I +SGG +RRV
Sbjct: 111 ----------------------VDEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQ 143
Query: 350 ALA-----LFMDEISNGLD 363
AL L +DE + GLD
Sbjct: 144 ALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 71/266 (26%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
PT + L DVS I+ G L+G SGK+TL A+ G L SG + ++G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 232 MDEFEPQRVA------AYISQHD-----NHIGEMTVRETLAFSARCQGVGSRFDMLTELD 280
+ + + + Q D N MT+ E +A R G S+
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSK-------K 118
Query: 281 KRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGG 340
+ EA + L +GL V + +SGG
Sbjct: 119 EARKEAVL-------------------------LLLVGVGL----PEEVLNRYPHELSGG 149
Query: 341 QKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI------SL 389
Q++RV ALA L DE ++ LD S QI++ +++ + G ++ +
Sbjct: 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFITHDLGV 208
Query: 390 LQPAPETYDLFDDIILLSDGLIVYLG 415
+ + D + ++ G IV G
Sbjct: 209 VA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 71/263 (26%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 239 RVAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGSRFDM----LTELDKRE-NEAGIKP 290
+A +S + +NHI +TVR+ + F RF LT+ D+R NEA
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRFPYSQGRLTKEDRRIINEA---- 119
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
I+ L+D YL L SGGQ++R
Sbjct: 120 ---IEYL---------HLEDLSDRYLDEL------------------SGGQRQRAFIAMV 149
Query: 351 LA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------ 399
LA + +DE N LD + QI+ +R+ L T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 400 FDDIILLSDGLIVYLGPRELVLD 422
D I+ L +G +V G + ++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L G++ + G +TA++G +GAGK+TL L G + + G I Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 953 IS-GYCEQNDIHSPL-VTVYESLLYSAW-LRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
S G Q+ + +VY+ + + A L+LP + E RK ++ ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETG 1068
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + E G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1069 RTVVCTIHQPSIDI 1082
T++ H IDI
Sbjct: 193 LTIIIATH--DIDI 204
|
Length = 283 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGY-LK 945
+L VS G A++G SG+GK+T++ DV +GSI I G ++
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---------SGSILIDGQDIR 66
Query: 946 K--QETFTRISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFI-EEI 997
+ ++ R G Q ND T+ ++ Y EV + I ++I
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
M + ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 121 MRFPDG---YDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 1058 MRTVKNTVETGRTVVCTIH 1076
+ V GRT + H
Sbjct: 177 QAAL-RDVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 30/221 (13%)
Query: 878 MPQE--MKLQGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929
MP E +++ + E +L +L GV + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 930 TGGYITGSITISGY-LKKQETFTRIS------GYCEQNDIHSPLVTVYESLLYSAWLRLP 982
+G + + G L K + R + G+ Q+ P +T E++ LP
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LP 112
Query: 983 PEVDSE-TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041
E+ E + L + L + L P LS +++R+ +A P ++F
Sbjct: 113 LELRGESSADSRAGAKALLEAVG-LGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLF 169
Query: 1042 MDEPTSGLDARAAAIVMRTV--KNTVETGRTVVCTIHQPSI 1080
DEPT LD + + N E G T+V H P +
Sbjct: 170 ADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942
K+ G K+ L VS + G + ++G SGAGK+TL+ + G + +GS+ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 943 YL------KKQETFTRISGYCEQ--NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFI 994
K+ R G Q N + S TV+E++ P E+ +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIE 118
Query: 995 EEIMELVELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
E ++EL+EL VGL + LS Q++R+ IA L NP ++ DE TS L
Sbjct: 119 ERVLELLEL-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Query: 1050 DARAAAIVMRTVKNT-VETGRTVVCTIHQ 1077
D ++ +++ E G T+V H+
Sbjct: 172 DPETTQSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 66/247 (26%), Positives = 98/247 (39%), Gaps = 51/247 (20%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFEPQ 238
++ VS +R G + LLGP +GKTT + L L + SGR T GH++ + E +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R + Q + E+T E L AR GV E +R +E
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDEL------------ 115
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----AL 353
L +GL AD LV + SGG +RR+ +L L
Sbjct: 116 -----------------LDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
F+DE + GLD T + I + + G ++ E L D + ++ G I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 414 LG-PREL 419
G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 51/235 (21%)
Query: 190 PGSMTLLLGPPSSGKTTLLLALAG--KLDS-SLKVSGRVTYNGHNMDEFEPQ-RVAAYIS 245
+T + G +GK+TLL +AG K D ++ ++G V ++ PQ R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEG 305
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 306 QEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISN 360
L +LGLD + + +SGG+K+RV ALA L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 361 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415
LD + Q++ ++Q LN VI + E L D I+++ DG + Y+G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-11
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 879 PQEMKLQGVH----EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 934
Q ++L+ V + L + G A++G SG+GK+TL+ +LAG
Sbjct: 334 GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQ 391
Query: 935 TGSITISG----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETR 990
GSIT++G L +Q IS ++ + S T+ ++L + P+ E
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE- 443
Query: 991 KMFIEEIMELVELNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
+ ++ V L L +S +G G LS +R+RL +A L+ + + +D
Sbjct: 444 ---LWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLD 499
Query: 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
EPT GLD V+ + E G+T++ H
Sbjct: 500 EPTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-11
Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ET 949
+L G+S A + G ++G SG+GK+TL +L G +GS+ + G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 950 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIE-----EIMELVELN 1004
R GY Q D+ T+ E++ R E D E IE + EL+
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENI-----ARFGEEADPEK---VIEAARLAGVHELILRL 458
Query: 1005 PL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P + +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 459 PQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 1064 TVETGRTVVCTIHQPSI 1080
G TVV H+PS
Sbjct: 518 AKARGGTVVVIAHRPSA 534
|
Length = 580 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGSITISG---YLK 945
LN VS F P +TAL+G SG+GK+TL M+ L T ITGSI +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 946 KQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE------I 997
+ +T + G Q P+ ++YE+++Y LRL D + +E+ I
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+ V+ + L S +GL G Q++R+ IA L +P II +DEPTS LD +A +
Sbjct: 135 WDEVK-DRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
Query: 1058 MRTVKN 1063
T+
Sbjct: 188 EETLLG 193
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQE 948
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G +
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R QN P +TV+E++ + LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 6e-11
Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 52/251 (20%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-EP 237
IL V + G + +LG SGK+TLL + G L G + +G ++ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78
Query: 238 QRVAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+ + Q +TV E +AF R T+L +
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR---------EHTKLPESLIR------- 122
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
++ V MK L+++GL D +SGG ++RV A+A
Sbjct: 123 EL-VLMK----------------LELVGLR----GAAADLYPSELSGGMRKRVALARAIA 161
Query: 353 L-----FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
L F+DE ++GLD + I IR+ L T VI + + D + +L+
Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLA 220
Query: 408 DGLIVYLGPRE 418
DG ++ G E
Sbjct: 221 DGKVIAEGTPE 231
|
Length = 263 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 10/193 (5%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGS--------ITISGYLKK 946
L+ V G + AL+G SG+GK+TL+ L+G TG GS + G L +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 947 QETFTRI-SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
+R +GY Q ++V E++L A P + ++ L L
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+++
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
Query: 1066 ET-GRTVVCTIHQ 1077
+ G TVV T+HQ
Sbjct: 200 QNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----LKKQET- 949
L+ VS R G L G SGAGKTTL+ +L G T G + I+G L+ ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 950 -FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R G Q+ P TVYE++ +R E + + R + + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
P LS +++R+ IA +V +P ++ DEPT LD + ++ +K + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1069 RTVVCTIHQPSI 1080
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 9e-11
Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 61/180 (33%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDG---------- 61
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
++ SP + R+ I + +L
Sbjct: 62 -----KEVSFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
+ Q + IA L N ++ +DEPT+ L + + ++ G V+
Sbjct: 84 -----SVGERQM--VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 64/247 (25%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-- 238
L +VS IR G ++G SGK+TLL LAG + SG V +G ++ + +P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 239 -RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
R Y+ Q D + T+R+ + A P D +
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 298 MKAAATEGQEANVLTDYYLK-VLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
++AA G +TD+ K GL D +G E RG+SGGQ++ V AL
Sbjct: 111 LRAAELAG-----VTDFVNKHPNGL----DLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFDDIIL 405
L +DE ++ +D ++ ++ +RQ +L +I SLL DL D II+
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQ---LLGDKTLIIITHRPSLL-------DLVDRIIV 210
Query: 406 LSDGLIV 412
+ G IV
Sbjct: 211 MDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 50/208 (24%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLL--LALAGKLDSSLKVSGRVTYNGHN- 231
KH LKD++ I +T L+GP GK+TLL L L +V G V +G N
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 232 ----MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAG 287
+D E +R + Q N M++ + +A+ R G+ + ELD+ +
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDK-----ELDEIVESS- 129
Query: 288 IKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT 347
+K AA + + L L G+SGGQ++R+
Sbjct: 130 ----------LKKAALWDEVKDRLHKSAL-------------------GLSGGQQQRLCI 160
Query: 348 GPALA-----LFMDEISNGLDSSTTFQI 370
ALA L MDE ++ LD +T +I
Sbjct: 161 ARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 80/285 (28%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
ILK V+ ++ G + ++GP SGK+TL +AG S SG + + G ++ E EP
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 240 VAA---YIS-QHDNHIGEMTVRETL--AFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
A +++ Q+ I ++ E L A +AR G +
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARG--------------------EEP 113
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR-----GISGGQKRR---- 344
+D+ + L +LG+D +E + G SGG+K+R
Sbjct: 114 LDLL--DFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEIL 156
Query: 345 --VTTGPALALFMDEISNGLDSSTT---FQIVNSIRQN----IHILNGTAVISLLQPAPE 395
P LA+ +DEI +GLD + +N +R+ + I + +++ ++P
Sbjct: 157 QMALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--- 212
Query: 396 TYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADF 440
D + +L DG IV G EL + E KG
Sbjct: 213 -----DYVHVLLDGRIVKSGDVELAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 17/186 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
++ +S PG + L+G +GAGKTT ++ G G IT +G QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 955 GYC-EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
GY E+ ++ P +TV + L Y A L+ P+ + + + ++ +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 1014 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1071
+ LS ++++ ++ P ++ +DEP SGLD ++ + E G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1072 VCTIHQ 1077
+ + H+
Sbjct: 184 IFSSHR 189
|
Length = 300 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----L 944
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +GS+ G L
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 945 KKQETFTRISGYCEQNDIHSPLVT--VYESLLYSAWLRLPPEVDSETRKM--FIEEIMEL 1000
Q ++ G QN L++ ++E++ A L + E +M E+I +
Sbjct: 521 DVQAVRRQL-GVVLQN---GRLMSGSIFENIAGGA--PLTLDEAWEAARMAGLAEDIRAM 574
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
P+ V G LS QR+RL IA LV P I+ DE TS LD R AIV
Sbjct: 575 ----PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS-----GYLKKQ 947
LL VS PG L+G +GAGK+TL+ +LAG +G +T GYL Q
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKGLRVGYLS-Q 73
Query: 948 ETF---------TRISGYCEQNDIHSPLVTVYESL------LYSAWLRLPPEVDSETRKM 992
E I G+ E ++ + L Y L L + L E+D T +
Sbjct: 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEA 133
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
EE + + + VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 134 RAEEALLGLGFPDEDRP------VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1053 A 1053
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Query: 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI- 387
+RG+S Q++R+T G LA LF+DE ++GLDS + IV ++ + +G A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 388 SLLQPAPETYDLFDDIILL-SDGLIVYLG 415
++ QP+ ++ FD ++LL G VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 47/206 (22%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
L D++ I+ G +T L+G +GK+TLL L G L + G + NG ++ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++ +++SQ+ ++ T+RE + + D + E
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA--------------RPDASDEE---------- 426
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
+ AA +A L ++ K GL DT++G+ G+SGGQ +R+ AL
Sbjct: 427 --IIAAL---DQAG-LLEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQ 376
L +DE + LD+ T I+ ++++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE 501
|
Length = 559 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 49/216 (22%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFE 236
+L VS + PG +LGP SGK+TLL LAG LD G VT +G ++D+ E
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+R + +Q D H+ + TVRE L + +PD +
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLA-------------------------RPDATDEE 440
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
A G L D+ + L DT++G E +SGG+++R+ AL
Sbjct: 441 LWAALERVG-----LADW---LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
L +DE + LD+ T +++ + L+G V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-10
Identities = 66/264 (25%), Positives = 98/264 (37%), Gaps = 71/264 (26%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----EFE 236
+ DVS +R G L+G SGK+TL LAG L S SG + ++G ++D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 237 PQRVAAYIS-QH-----DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP 290
R + Q + MTV + LA + E A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAE---------PLRIHGGGSGAERRARV-- 409
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
L+++GL D +SGGQ++RV A
Sbjct: 410 ----------------------AELLELVGLP----PEFLDRYPHELSGGQRQRVAIARA 443
Query: 351 LA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAV-IS-----LLQPAPETYDL 399
LA L +DE + LD S Q++N ++ L T + IS + A
Sbjct: 444 LALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA------ 497
Query: 400 FDDIILLSDGLIVYLGPRELVLDF 423
D + ++ DG IV GP E V +
Sbjct: 498 -DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISG- 942
++ + VS PG + ++G SG+GK+TL L G + G +G + + G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 943 -YLK-KQETFTRISG----YCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFI 994
L + ++ G Q+ + S P++T+ + + + L E RK
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA-EARKR-A 133
Query: 995 EEIMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
E++E V L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 134 VELLEQVGLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 1054 AAIVMRTVKN-TVETGRTVVCTIHQPSI 1080
A ++ +K+ E G V+ H +
Sbjct: 190 QAQILDLLKDLQRELGMAVLFITHDLGV 217
|
Length = 539 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI-----SGYLKKQET 949
L ++ PG + L G SG+GKTTL+ ++ G ++ GS+ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 950 FTRIS-GYCEQ--NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R + GY Q N + +T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG-- 132
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV- 1065
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++
Sbjct: 133 -DHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 1066 ETGRTVVCTIHQPSI 1080
E G T++ H I
Sbjct: 190 EQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 28/219 (12%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETF 950
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 951 TRIS-------GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
+ G+ Q P T E++ + +++ R E++E V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL 131
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1060
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 132 ---EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1061 VKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
+ + T VV H + + V ++KDG
Sbjct: 187 LNRELNTSFLVV--THDL------ELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISG--YLK-KQ 947
++GVS + G + ++G SG+GK+ L + G K I G I G L +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 948 ETFTRISG----YCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+ +I G Q+ + S P++T+ + + L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+ + L P LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 1062 KNTV-ETGRTVVCTIH 1076
K E G ++ H
Sbjct: 197 KELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 878 MPQEMKLQGVH---------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928
MP E ++ VH E +L +L GV + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVE-VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59
Query: 929 KTGGYITGSITISGY-LKKQETFTRIS------GYCEQNDIHSPLVTVYESLLYSAWLRL 981
G +G +++ G L + + R G+ Q+ + P + E++ A LR
Sbjct: 60 DDGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR- 116
Query: 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041
E ++R L+E L + L LP + LS +++R+ +A P ++F
Sbjct: 117 -GESSRQSR----NGAKALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLF 169
Query: 1042 MDEPTSGLD 1050
DEPT LD
Sbjct: 170 ADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFTRI 953
L GVS G +T ++G +G GKTTL+ L G +GSI + G + K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITKLPPHERA 73
Query: 954 S---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
Y Q P +TV E+LL L + +EI EL P+ + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLL----TGLAALPRRSRK--IPDEIYELF---PVLKEM 124
Query: 1011 VGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
+G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 125 LGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 30/157 (19%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----------YLKKQETFTRI 953
G+ TAL G SG+GKT+L++++AG G I ++G +L ++ R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK---RR 77
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
GY Q+ P TV +L Y W ++ + ++++ L+ + L L
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRY 125
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 126 PGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 42/206 (20%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISG----Y 943
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 944 LKKQETFTRIS-GYCEQN---DIHSPLVTVYESLLYSAW-LRLPPEVDSETRKMFIEEIM 998
KK R + G QN + +P TV E + + L L E + E R ++E +
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKR---VKEAL 122
Query: 999 ELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ V G+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 123 KAV-------------GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIH 1076
A+ +M+ + + + G T++ + H
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 18/195 (9%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY 943
D L +G+S G + G +G+GKTTL+ +LAG G + +
Sbjct: 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV--LLNGGPL 64
Query: 944 LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
++++ R Y ++V E+L + + E +EE + V L
Sbjct: 65 DFQRDSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGL 115
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
N V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 116 NGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
Query: 1064 TVETGRTVVCTIHQP 1078
G VV T HQ
Sbjct: 171 HCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 53/242 (21%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L+DVS ++PG ++GP +GK+TLL A+ G L + SG + G +++ E +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK-ERK 68
Query: 239 RVAAYISQHDNHIGEM--TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
R+ Y+ Q + + +VR+ + G F L++ DK
Sbjct: 69 RI-GYVPQRRSIDRDFPISVRDVVLM--GLYGHKGLFRRLSKADKA-------------- 111
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+ EA L+ +GL + + D I +SGGQ++RV AL
Sbjct: 112 -------KVDEA-------LERVGL-----SELADRQIGELSGGQQQRVLLARALVQDPD 152
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDG 409
L +DE G+D T I +R+ + T ++ L + FD ++LL+
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLLNRT 208
Query: 410 LI 411
++
Sbjct: 209 VV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 51/244 (20%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
T L D++ I G +LLGP GKTT L +AG + + SGR+ G ++ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
R A + Q+ MTV + +AF + + V E+D+R E
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVREVA---------- 115
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
++L ++ D + +SGGQ++RV G A+
Sbjct: 116 -------------------ELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKV 151
Query: 353 LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
MDE +SN LD+ Q+ ++ + GT I + E + D I +++DG I
Sbjct: 152 FLMDEPLSN-LDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
Query: 412 VYLG 415
+G
Sbjct: 210 QQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----- 943
D +L +S G AL+G SG+GK+TL++++ + +G I I G+
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 944 ----LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
L++Q G Q D+ TV E++ Y P E +EE
Sbjct: 70 TLASLRRQ------IGLVSQ-DVFLFNDTVAENIAYGR-----PGATREE----VEEAAR 113
Query: 1000 LVELNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ L +G GV LS QR+R+ IA L+ +P I+ +DE TS LD
Sbjct: 114 AANAHEFIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+ +V ++ ++ RT H+ S
Sbjct: 173 SERLVQAALERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITIS---------- 941
+N VS G + L+G +GAGKTT ++ G R G I I+
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 942 --GYLKKQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSET--RKMFIE 995
GYL QE F ++ TV ++++ +R E D + RK ++
Sbjct: 80 GIGYLP-QEASIFRKL--------------TVEDNIMAVLEIR---EKDLKKAERKEELD 121
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
++E + LR S S LS +R+R+ IA L ANP I +DEP +G+D A
Sbjct: 122 ALLEEFHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176
Query: 1056 IVMRTVKNTVETGRTVVCTIH 1076
+ R +K+ + G V+ T H
Sbjct: 177 DIQRIIKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 69/275 (25%), Positives = 109/275 (39%), Gaps = 74/275 (26%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV-SGRVTYNGHNMDEFEP- 237
ILK V+ ++ G + ++GP SGK+TL + G +V G + ++G ++ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+R A I LAF GV + + ++ R GI P+
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE---- 118
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR-----GISGGQKRRV----- 345
F+K ++LGLD +E + G SGG+K+R
Sbjct: 119 -FIK-----------ELKEKAELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 346 -TTGPALALFMDEISNGLDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFD 401
P LA+ +DE +GLD + +N++R+ G +I+ Q L D
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREEG---RGVLIITHYQ------RLLD 208
Query: 402 DII-----LLSDGLIVYLGPRELVLDFFESMGFKC 431
I +L DG IV G EL + E G+
Sbjct: 209 YIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-10
Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 58/254 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP--- 237
L +VS IRPG ++G SGK+TLL L G + G V +G ++ + +P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+R Y+ Q D + T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 298 MKAAATEGQEANVLTDYY-LKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
++AA G +T++ GL D +G E R +SGGQ++ V AL
Sbjct: 572 LRAAELAG-----VTEFVRRHPDGL----DMQIG-ERGRSLSGGQRQAVALARALLRDPP 621
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIH---ILNGTAVISLLQPAPETYDLFDDIILLSD 408
L +DE ++ +D+ + + + +++ + ++ T SLL DL D II++ +
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMDN 674
Query: 409 GLIVYLGPRELVLD 422
G IV GP++ VL+
Sbjct: 675 GRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 897 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSITISG---YLKKQE-- 948
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R G Q P ++V+++++ A L+L D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY--LKKQETFTRISGYCEQ 959
G + +G +GAGK+T + +L G T G + ++G +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGL--- 101
Query: 960 NDIHSPLVTVYESLLYSAW----------LRLPPEVDSETRKMFIEEIMELVELNP-LRQ 1008
++ L W L+L E+ + ++ + E+++L L+
Sbjct: 102 ------VMGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVET 1067
V LS QR R +A L+ P ++F+DEPT GLD A A + +K E
Sbjct: 153 P------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1068 GRTVVCTIH 1076
TV+ T H
Sbjct: 207 QATVLLTTH 215
|
Length = 325 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 6e-10
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T+L D+S I G + +LGP +GK+TLL LAG L S SG + +G ++ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 239 RVA---AYISQ 246
+A AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 53/207 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-- 237
+LK ++ G + LLG +GK+TLLL L G L SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 238 ----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
QRV D+ + V + +AF G+ E+++R EA
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L +G + +SGG+K+RV A+A
Sbjct: 112 ----------------------LTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAM 144
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIR 375
L +DE + GLD + Q++ +R
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 7e-10
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ---ET 949
L+ VS RPG A++G G+GK+TL+ +L G + T G S+ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 950 FTRISGYCEQNDIHSPLV--TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL---- 1003
R GY Q+ L T+ +++ A P D E EI+ EL
Sbjct: 537 LRRNIGYVPQD---PRLFYGTLRDNIALGA-----PYADDE-------EILRAAELAGVT 581
Query: 1004 ---NPLRQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 582 EFVRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERF 640
Query: 1058 MRTVKNTVETGRTVVCTIHQPSI 1080
+K + G+T+V H+ S+
Sbjct: 641 KDRLKRWLA-GKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 55/252 (21%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL------DSSLKVSGRVTYNGHNMD 233
L D+S I GS T L+G SGK+T+ + G L +S + V G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ ++V DN TV + +AF + V R +M+ + + G
Sbjct: 81 DIR-EKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIKIVRDVLADVG------ 132
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ DY D +SGGQK+RV LA
Sbjct: 133 -----------------MLDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
+ +DE ++ LD + QI+ IR+ + N VIS+ E ++ D +++L D
Sbjct: 161 EPKIIILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDD 218
Query: 409 GLIVYLG-PREL 419
G ++ G P E+
Sbjct: 219 GKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-10
Identities = 75/277 (27%), Positives = 116/277 (41%), Gaps = 59/277 (21%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
+L D+S I G M LLGP SGKTTLL +AG L+ + SG + ++G ++
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 237 PQ-RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRE--NEAGIKPDPD 293
+ R ++ QH MTV + +AF LT L +RE N A IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK---- 114
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ L L++ + D +SGGQK+RV ALA
Sbjct: 115 ------------AKVTQL---------LEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
L +DE LD+ ++ +RQ L T+V + E ++ D ++++S
Sbjct: 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQ 212
Query: 409 GLIVYLG-PRELVLDFFESMGFKCPERKGVADFLQEV 444
G I G P ++ + P + V +F+ EV
Sbjct: 213 GNIEQAGTPDQVWRE---------PATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-10
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 27/167 (16%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQETFT 951
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV-ELNPLRQSL 1010
G Q+ P +TV +++ Y + R M E+ E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 1011 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--E 236
T+ D+S + G + GP +GKTTLL LAG L +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAF 262
+ Y+ E+T E L F
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF 98
|
Length = 209 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 8e-10
Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 56/270 (20%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
T+L D+S I G + L+G GKTTLL A+AG + ++ ++GR+ ++ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+R A + Q+ + V + +AF R Q + ++ +R +A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
LK++GL D + +SGG ++R+ A+A
Sbjct: 122 ------------------LKLVGL---GD--AAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L +DE + LD++ + I L ++ + + L D ++ DG +
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 413 YLG-PRELVLDFFESMGFKCPERKGVADFL 441
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L+ +S R G + ALMG +GAGK+TL+ +L+G GSI I G ++ F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDG---QEMRFASTT 74
Query: 955 GYCEQN--DIH-----SPLVTVYESLLYSAWL-RLPPEVDSETRKMFIEEIMEL-----V 1001
I+ P +TV E+L +L +LP + R++ E E V
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+++P + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 1062 KNTVETGRTVVCTIH 1076
+ GR ++ H
Sbjct: 184 RELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 233
R T L +VS ++ G + L+GP SGK+TLL A+AG L + SG + +G ++
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 234 EFEPQRVA---AYISQ 246
+ + + Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
+T L+D+S + G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 232 MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+ P R Y+ Q D + +TV + +A QGV + RE
Sbjct: 68 VTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARE-------- 110
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
+A L+++GL + +SGG ++RV AL
Sbjct: 111 -------RAEE------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARAL 146
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIH-----ILNGTAVISLLQPAPETYDLFD 401
A L +DE + LD+ T R+ + I T LL T+D+ D
Sbjct: 147 AVDPDVLLLDEPFSALDALT--------REQLQEELLDIWRETGKTVLLV----THDI-D 193
Query: 402 DIILLSDGLIVYLGPR 417
+ + L+D ++V L R
Sbjct: 194 EAVFLADRVVV-LSAR 208
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 73/194 (37%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGYLKKQ 947
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 948 ETFTRISGYCEQNDIHSPLV---------------------TVYESLLYSAWLRLPPEVD 986
+I+ P V ++Y+++ Y LRL D
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG--LRLHGIKD 119
Query: 987 SETRKMFIEEIMELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVAN 1036
E + E+VE + L++ L + GLS Q++RL IA L
Sbjct: 120 KE--------LDEIVE-SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVK 167
Query: 1037 PSIIFMDEPTSGLD 1050
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQ 947
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G+I G L +
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 948 ETFTR--------------ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD-SETRKM 992
E R I G + S L + R +D + K+
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA-------RGEEPLDLLDFLKL 122
Query: 993 FIEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ + L+ ++ L +S+ G S ++KR I + P + +DE SGLD
Sbjct: 123 L-KAKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
A IV + E R+ + H +
Sbjct: 177 IDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-09
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 38/170 (22%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE 948
+ +LL +S G A++G +GAGK+TL+ +LAG G ++G++ + +K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKVGETVK--- 386
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
GY +Q+ +T + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 1009 SL--VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 66/282 (23%), Positives = 106/282 (37%), Gaps = 72/282 (25%)
Query: 161 LKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLK 220
LKGSLN +++ + ++D+S I G + LG +GK+T L L G L L
Sbjct: 22 LKGSLNHF--FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LP 76
Query: 221 VSGRVTYNGHNMDEFEPQRVAAYISQHDNHIG-EMTVRETLAFSARCQGVGSRFDMLTEL 279
SG+V NG D F + ++ IG M + L +D+
Sbjct: 77 TSGKVRVNGK--DPFRRRE------EYLRSIGLVMGQKLQLW-----------WDLPALD 117
Query: 280 DKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339
+ I PD D F + D+ ++L L + + + R +S
Sbjct: 118 SLEVLKL-IYEIPD-DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSL 159
Query: 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQ-----------NIHILNG 383
GQ+ R AL LF+DE + GLD + I +++ HI +
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD 219
Query: 384 TAVISLLQPAPETYDLFDDIILLSDGLIVYLGP-RELVLDFF 424
A L D ++L+ G +V+ G +L F
Sbjct: 220 IA------------TLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 60/268 (22%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH---NM 232
+ + DV+ I G +L+GP SGKTT L + ++ + SG + +G ++
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 233 DEFEPQRVAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
D E +R Y+ Q IG +TV E +A + G + KR +E
Sbjct: 69 DPVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDKE-----RIKKRADE---- 116
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
L ++GLD + D +SGGQ++RV
Sbjct: 117 -------------------------LLDLVGLD---PSEYADRYPHELSGGQQQRVGVAR 148
Query: 350 ALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404
ALA L MDE LD T Q+ I+ + G ++ + E L D I
Sbjct: 149 ALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRIA 207
Query: 405 LLSDGLIVYLG-PRELVL----DFFESM 427
++ G IV P E++ DF E
Sbjct: 208 VMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 41/190 (21%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 954 SGYCEQNDIHSPLVTVYESL---LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
DI + E ++ A+ PPE+ F+ + E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
G S ++KR I L+ P + +DEP SGLD A +V + E G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1071 VVCTIHQPSI 1080
V+ H +
Sbjct: 157 VLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 67/271 (24%)
Query: 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 230 HNMDEFEP------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRE 283
++ +R I QH N + TV E +A GV E+++R
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-----AEIEERV 121
Query: 284 NEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKR 343
E L+++GL D D +SGGQK+
Sbjct: 122 LE-----------------------------LLELVGL---EDK--ADAYPAQLSGGQKQ 147
Query: 344 RVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQ-----NIHILNGTAVISLLQPA 393
RV ALA L DE ++ LD TT I+ +R + I+ T + +++
Sbjct: 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK-- 205
Query: 394 PETYDLFDDIILLSDGLIVYLGPRELVLDFF 424
+ D + ++ G +V G V + F
Sbjct: 206 ----RICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 883 KLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSI 938
L + K +L N +S + G +TAL+G +G GK+TL+ A R ++G G
Sbjct: 7 NLTVGYGTKRIL-NDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDK 64
Query: 939 TISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY------SAWLRLPPEVDSETRKM 992
IS +Q R Q+ + +TV E + Y S W RL S
Sbjct: 65 PISMLSSRQ--LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNA 117
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ + ME +N L + + LS QR+R +A+ L + ++ +DEPT+ LD
Sbjct: 118 RVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIH 1076
+MR ++ G+TVV +H
Sbjct: 173 HQVELMRLMRELNTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQ 947
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
+ G Q P +TV E++ + P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK---- 122
Query: 1008 QSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +K
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1063 NTVETGRTVVCTIHQ 1077
+ E G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG--YLKKQETFTRISGYCE 958
F G +TA++G SG+GK+TL++++AG +T +G + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 959 QNDIHSPLVTVYES--LLYSAWLRLPPE----VDSETRKMFIEEIMELVELNPLRQSLVG 1012
+N++ + L TV ++ L S L+L E ++ ++ + + R
Sbjct: 78 ENNLFAHL-TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVKNTVETGRTV 1071
LPG LS +R+R+ +A LV + ++ +DEP + LD A A ++ + ET TV
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182
Query: 1072 VCTIHQPS 1079
+ HQP
Sbjct: 183 LMVTHQPE 190
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 59/208 (28%), Positives = 89/208 (42%), Gaps = 36/208 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSITISGYLKKQE--- 948
++ V+ G L+G SG+GKTT + + I G I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE---VDSETRKMFIEEIMELVELNP 1005
R GY Q P +TV E++ P+ D E K +E+++LV L+P
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVK 1062
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 126 -SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 1063 NTVETGRTVVCTIHQPSIDIFESFDEAI 1090
E G+T+V H DI DEA+
Sbjct: 183 K--ELGKTIVFVTH----DI----DEAL 200
|
Length = 309 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 47/208 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 233
LK+++ I +T L+GP GK+TLL +L L +++ G+V ++G ++ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E +R + Q N M++ + +A+ R G+ + ELD+ E+
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDK----KELDEIVEES------- 124
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K AA + + L D L G+SGGQ++R+ ALA
Sbjct: 125 ----LKKAALWDEVKDRLHDSAL-------------------GLSGGQQQRLCIARALAV 161
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
L +DE ++ LD T +I I++
Sbjct: 162 EPEVLLLDEPTSALDPIATGKIEELIQE 189
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 910 LMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFTRISGYCEQNDIHSPLVT 968
L+G SG GKTTL+ +LAG + GSI + G + R Q+ P +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1028
V E++ + +R +V K + E + LV+L LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 1029 IAVELVANPSIIFMDEPTSGLDAR 1052
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-09
Identities = 82/331 (24%), Positives = 123/331 (37%), Gaps = 88/331 (26%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMDEFE 236
++ ++ I G LLGP GKTT+L +AG D SGR+ +G ++
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 237 P-QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
R + Q MTV E +AF R Q + E+ R EA
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA----- 350
L+++ L+ A +SGGQ++RV A
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 351 LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD------LFDDII 404
L +DE + LD Q+ N ++ L T V T+D + D I+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV-------THDQEEALTMSDRIV 216
Query: 405 LLSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFLQE-------VTSRKDQQQYWAH 456
++ DG I G PRE+ ++ P+ VA F+ E V R D+Q+ A+
Sbjct: 217 VMRDGRIEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRAN 267
Query: 457 KEMRYRFVTVQEFCEAFQSFHVGQKLTAELR 487
E R + V + GQKL LR
Sbjct: 268 VEGRECNIYVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQN---D 961
G + AL+GV+G+GK+TL L G +G I+I G +Q + Y Q+ D
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 962 IHSPL----VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017
P+ V + + WLR + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
LS Q+KR+ +A + +I +DEP +G+D + A ++ ++ + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 67/248 (27%), Positives = 98/248 (39%), Gaps = 48/248 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----E 234
IL D+S + PG ++GP +GKTTLL L G+ S SG VT G
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 235 FEPQRVAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
FE ++ +S H+ TVR+ + S F + GI
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVVL-SG-------FFASI----------GI-YQE 142
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL- 351
D+ AAA L++LG AD G +S G++RRV AL
Sbjct: 143 DLTAEDLAAAQW----------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALV 187
Query: 352 ----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
L +DE + GLD Q++N + + A++ + A E F +LL
Sbjct: 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK 247
Query: 408 DGLIVYLG 415
+G +V G
Sbjct: 248 EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 72/306 (23%), Positives = 103/306 (33%), Gaps = 84/306 (27%)
Query: 196 LLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIG--- 252
LLGP GKTTLL LAG SG + +G ++ P H HI
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPP---------HLRHINMVF 48
Query: 253 -------EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEG 305
MTV E +AF + + V E+ R EA
Sbjct: 49 QSYALFPHMTVEENVAFGLKMRKVPR-----AEIKPRVLEA------------------- 84
Query: 306 QEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISN 360
L ++ D +SGGQ++RV AL L +DE +
Sbjct: 85 LRLVQLEEF---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLS 129
Query: 361 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG-PREL 419
LD Q+ ++ L G + + E + D I ++ G I +G P E+
Sbjct: 130 ALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188
Query: 420 VLDFFESMGFKCPERKGVADFLQEVT-------SRKDQQQYWAHKEMRYRFVTVQEFCEA 472
++ P VA F+ E+ RK +Q A E R + E
Sbjct: 189 ---------YEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRRCDIYTDVPVEK 239
Query: 473 FQSFHV 478
Q HV
Sbjct: 240 DQPLHV 245
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L ++ G L ++G SG GKTTL++++AG Y GSIT+ G + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
G QN+ P V +++ + L V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 66/250 (26%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 235
+L D+S ++ G + LGP +GKTT + + G + SG +T++G + +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 236 EP--QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+R+ A I + +T RE L AR G+ KR +E
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGIR---------KKRIDEV------- 110
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L V+GL + ++G S G K+R+ AL
Sbjct: 111 ----------------------LDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLG 143
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILN---GTAVIS--LLQPAPETYDLFDDI 403
L +DE +NGLD + +R+ I L T +IS LL E + D I
Sbjct: 144 NPDLLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRI 196
Query: 404 ILLSDGLIVY 413
+++ G ++
Sbjct: 197 GIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 59/270 (21%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
L VS I+ G LLGP GKTTLL +AG + SG + +G ++ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+R + Q+ +TV E +AF R + + E+ +R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
+ EG + +SGGQ++RV AL
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L +DE LD + ++ + G + + E + D I +++ G I
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELK-RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
Query: 413 YLG-PRELVLDFFESMGFKCPERKGVADFL 441
+G P E+ ++ P + VADF+
Sbjct: 211 QIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 66/259 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ- 238
+L+D+S I G L+GP SGK+TL+ + D SGR+ +GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 239 --RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
R +SQ D + TV E +A+ +P +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYG-------------------------RPGATREE 107
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPAL--- 351
+AA + AN ++ ++ L DT++G+ RG+ SGGQ++R+ AL
Sbjct: 108 VEEAA----RAAN-AHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 352 --ALFMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDI 403
L +DE ++ LD+ + + ++ ++ T VI S ++ A D I
Sbjct: 157 PPILILDEATSALDTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRI 206
Query: 404 ILLSDGLIVYLGPRELVLD 422
++L DG IV G E +L
Sbjct: 207 VVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 49/185 (26%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+ +L+D++ + G +LGP GK+TLL +AG + SG V +G P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDG--RPVTGP 70
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
Y+ Q D + +TV + +A +G K E K
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARERAK-------- 112
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
L+++GL D +SGG ++RV ALA
Sbjct: 113 ----------------ELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALATRPKL 151
Query: 353 LFMDE 357
L +DE
Sbjct: 152 LLLDE 156
|
Length = 248 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 50/251 (19%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV--SGRVTYNGHNMDEFEP 237
IL ++S I+PG + ++G SGK+TL KL V +GRV +GH++ +P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ + + ++E + F+ R+N A P ++
Sbjct: 72 AWLRRQVG--------VVLQENVLFNRSI---------------RDNIALADPGMSMERV 108
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----A 352
++AA G + L DT+VG++ G+SGGQ++R+ AL
Sbjct: 109 IEAAKLAGAHDFISE--------LPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRI 159
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIH-ILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L DE ++ LD ++ ++I +N+H I G VI ++ T D II++ G I
Sbjct: 160 LIFDEATSALD----YESEHAIMRNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGRI 214
Query: 412 VYLGPRELVLD 422
V G + +L
Sbjct: 215 VEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 42/211 (19%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----- 942
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 466 APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAI 523
Query: 943 ----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIM 998
+L++Q V + E++L+S +R + E ++
Sbjct: 524 ADPAWLRRQMG-----------------VVLQENVLFSRSIR--DNIALCNPGAPFEHVI 564
Query: 999 ELVELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
+L + LP G LS QR+R+ IA LV NP I+ DE TS
Sbjct: 565 HAAKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
LD + A++MR ++ + GRTV+ H+ S
Sbjct: 624 LDYESEALIMRNMR-EICRGRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 1e-08
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 883 KLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIT 939
+++ + + +L G+S + G + ++G SG+GK+TL+ L G + GSIT
Sbjct: 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSIT 60
Query: 940 ISG----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIE 995
+ G K R G Q P +TV E++ + P +V ++ E
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEARE 115
Query: 996 EIMELVELNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ +EL+E VGL + LS Q++R+ IA L +P ++ DEPTS LD
Sbjct: 116 KALELLEK-------VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
V+ +K+ E G T++ H+
Sbjct: 169 PELVGEVLDVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 38/226 (16%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG-YLKKQ 947
E++LV LN +S F + ++G SG+GK+TL+ G Y G+I + Y+ +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 948 ETFTRISGYCEQNDIHS--------PLV-----------TVYESLLYSAWLRLPPEVDSE 988
+ + I + +V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 989 TRKMFIEEIMEL----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044
F M L +E +P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 1045 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI 1090
PT+GLD + +M+ + + +TV H + E DE I
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVI 247
|
Length = 320 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSITISGYLKKQE 948
LL+ +S F G +T L+G +G+GK+TL+ +L GR G + + + + K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLESWSSK-- 81
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEIMELVEL 1003
F R Y Q + +TV E + A R P + R+ +EE + LV L
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGL 137
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
PL LV LS +R+R IA+ + + + +DEPTS LD V+ V
Sbjct: 138 KPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 1064 -TVETGRTVVCTIH 1076
+ E G TV+ +H
Sbjct: 193 LSQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 78/271 (28%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
P+R ILK +S I PG L+G GK+T++ L D + SG + +G +
Sbjct: 11 PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVD 66
Query: 232 MDEFEPQ---RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
+ + + +SQ + + + T+ E + +
Sbjct: 67 IRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------------------- 100
Query: 289 KPDPDIDVFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMIRG--ISGG 340
KPD + +AA +AN+ L D Y DTLVG+ RG +SGG
Sbjct: 101 KPDATDEEVEEAAK----KANIHDFIMSLPDGY----------DTLVGE---RGSQLSGG 143
Query: 341 QKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI-----SLL 390
QK+R+ AL L +DE ++ LD+ + ++V + T ++ S +
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALDAESE-KLVQEALDRA-MKGRTTIVIAHRLSTI 201
Query: 391 QPAPETYDLFDDIILLSDGLIVYLG-PRELV 420
+ A D I +L +G +V G EL+
Sbjct: 202 RNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSITISGYLKKQETF 950
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 951 TRIS---GYCEQNDIHSPLVTVYE------SLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+ GY Q P +TV E LL W + E + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 1002 ELNPLRQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
L+P P LS Q++R+ +A L A+P ++ MDEP LD I
Sbjct: 122 GLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALD----PITRDQ 173
Query: 1061 VKNTV-----ETGRTVVCTIHQPSIDIFESF 1086
++ E G+T+V H DI E+F
Sbjct: 174 LQEEFKRLQQELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKK----- 946
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 947 -QETFTRISGYCEQ---NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
Q+ T +Q DI S + +L PE + R ++E + LV+
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV-------PEAEITRR---VDEALTLVD 125
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
R + LS Q+KR+ IA LV + +DEPT+GLD ++ ++
Sbjct: 126 AQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 1063 NTVETGRTVVCTIHQPSIDIFESFDEAI 1090
V G V+ + H ID+ +A+
Sbjct: 181 RIVAQGNHVIISSH--DIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 235
T+L DVS I G + LLGP SGK+TLL +AG L+ SG + +G ++ +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 236 EPQRVA-----AYISQHDNHIGEMTVRETLAF 262
E + + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 70/272 (25%), Positives = 110/272 (40%), Gaps = 64/272 (23%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV-SGRVTYNG- 229
T + ++DVS + PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 230 --HNMDEFEPQRV----AAYISQHDNHI--GEMTVRETLAFSARCQGVGSRFDMLTELDK 281
+ E E +++ A I Q MT+ + + + R G GSR
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR--------- 126
Query: 282 RENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341
EA L+ +GL D D +SGG
Sbjct: 127 ------------------------AEARKRAVELLEQVGLP---DPERRDRYPHQLSGGM 159
Query: 342 KRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396
++RV ALA L DE + LD +T QI++ ++ ++ G AV+ + T
Sbjct: 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------T 212
Query: 397 YDL------FDDIILLSDGLIVYLGPRELVLD 422
+DL D ++++ G IV GP E +L
Sbjct: 213 HDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 57/267 (21%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-R 239
LK+VS + G ++LGP SGK+ LL +AG + SG++ NG ++ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
+Y+ Q+ MTV + +A+ G+ R E++++ E
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLEIA------------ 114
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LF 354
++LG+D + + +SGG+++RV AL L
Sbjct: 115 -----------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 355 MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYL 414
+DE + LD T ++ +++ I G V+ + E + L D + ++ +G ++ +
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 415 GPRELVLDFFESMGFKCPERKGVADFL 441
G E V FK P+ + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 49/196 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L+DVS I G + ++LGP GKTTLL +AG + S G + NG ++ +R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
+ Q++ + + V + +AF + +G+
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA--------------------------- 107
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LF 354
+ + L ++GL + I +SGG ++RV ALA L
Sbjct: 108 -------QRREIAHQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 355 MDEISNGLDSSTTFQI 370
+DE LD+ T Q+
Sbjct: 156 LDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSITISGYLKKQETFTRISGYCEQN 960
G L L+G +GAGKTTL+ R G I G++ ++G R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAG--ASPGKGWRHIGYVPQR 57
Query: 961 DIHS-----PLVTVYESLLYS-----AWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1071 VVCTIH 1076
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
+ +SGGQ++RV AL L +DE ++GLD ++ +++ +R+ G VI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 388 SLLQPAPETYDLFDDIILLSDG 409
+ D +I+L DG
Sbjct: 135 IVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 62/216 (28%)
Query: 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG- 229
+ + L+ILK V +++ G ++GP SGK+TLL LAG D S SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 230 --HNMDE-----FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKR 282
H +DE + V ++ Q + I +T E +A +G S
Sbjct: 73 PLHKLDEDARAALRARHV-GFVFQSFHLIPNLTALENVALPLELRGESSA---------- 121
Query: 283 ENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI---RGISG 339
D A A L+ +GL G + +SG
Sbjct: 122 ------------DSRAGAKA------------LLEAVGL--------GKRLTHYPAQLSG 149
Query: 340 GQKRRVTTGPALA-----LFMDEISNGLDSSTTFQI 370
G+++RV A A LF DE + LD +T +I
Sbjct: 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 54/258 (20%), Positives = 84/258 (32%), Gaps = 94/258 (36%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+LKD+S I G ++GP +GK+TLL LAG+L +SG V G +
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV-GETV----- 385
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
Y QH + + T L+
Sbjct: 386 --KIGYFDQHRDEL---------------------DPDKTVLE----------------E 406
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM---IRGISGGQKRRVTTGPALALF 354
+ +G E V YL G G++ + +SGG+K R+ LA
Sbjct: 407 LSEGFPDGDEQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARL----LLAKL 453
Query: 355 M---------DEISNGLDSSTTFQIVNSIRQNIHILN---GTAVI-----SLLQPAPETY 397
+ DE +N LD + S+ L GT ++ L
Sbjct: 454 LLQPPNLLLLDEPTNHLD-------IESLEALEEALLDFEGTVLLVSHDRYFLD------ 500
Query: 398 DLFDDIILLSDGLIVYLG 415
+ I L+ D + + G
Sbjct: 501 RVATRIWLVEDKVEEFEG 518
|
Length = 530 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 882 MKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSI 938
++L+ V + + L+ ++ G L+G SG GKTT + ++AG + T G I
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRI 57
Query: 939 TISG----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFI 994
I G L ++ R QN P +TVY+++ + LR P+ + + R +
Sbjct: 58 YIGGRDVTDLPPKD---RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER---V 111
Query: 995 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
E+ EL+++ L LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 112 REVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 955 ---GYCEQN-DIHSPLVTVYESLLYSAW-LRL-PPEVDSETRKMFIEEIMELVELNPLRQ 1008
G Q+ D TV++ + + + L EV+ EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
LS Q+KR+ IA L +P +I +DEP + LD R +M + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1069 RTVVCTIH 1076
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-08
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFT 951
L+ S +PG AL+G SG+GK+T+ ++AG + G I G +++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 952 RISG---YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSE--TRKMFIEEIM-------- 998
++ +Q DI TV ++L + W P+ D + I +++
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 999 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1058 MR 1059
Sbjct: 655 DD 656
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 34/192 (17%)
Query: 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR-------I 953
G + A++G SGAGK+TL++++AG +T +G I I+G T +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILING-----VDHTASPPAERPV 73
Query: 954 SGYCEQNDIHSPLVTVYES--LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
S ++N++ + L TV ++ L S L+L ++E R+ +E V L L
Sbjct: 74 SMLFQENNLFAHL-TVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGF---LK 124
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVKNTV--ET 1067
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + E
Sbjct: 125 RLPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDER 179
Query: 1068 GRTVVCTIHQPS 1079
T++ H P
Sbjct: 180 KMTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 884 LQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITIS 941
L G H+ + VL N VS + + G AL+G SG GK+TL +L G + G ++
Sbjct: 18 LSGKHQHQTVL-NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76
Query: 942 GYLKK--QETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEI 997
L + ++ F R Q+ I + P TV E + LR +D R E+
Sbjct: 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEM 134
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ V+L+ L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 135 LRAVDLDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 56/272 (20%), Positives = 93/272 (34%), Gaps = 65/272 (23%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
K L +VS I G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 232 MDEFEPQRVAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGSRFDMLTELDKRENE 285
+ + + + Q + + TV L+ R G L K +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG----------LSKSQQR 120
Query: 286 AGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV 345
+ G + L ++ SGGQ++R+
Sbjct: 121 I-----------AELLDQVGLPPSFLDRRPHEL-------------------SGGQRQRI 150
Query: 346 TTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAV-----ISLLQPAPE 395
AL L +DE ++ LD S QI+N + + T + ++L+
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----- 205
Query: 396 TYDLFDDIILLSDGLIVYLGPRELVLDFFESM 427
+ D I ++ +G IV +GP E +L
Sbjct: 206 -EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-08
Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 36/195 (18%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK-------GL 66
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
RV Y+SQ E TV + + +G G ++L EL++ D +
Sbjct: 67 RV-GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 299 KA-AATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
+G + L LG D V +SGG +RRV ALA
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRV----ALARALLE 170
Query: 353 ----LFMDEISNGLD 363
L +DE +N LD
Sbjct: 171 EPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG--YLKKQETFTRISGYCEQNDI 962
G + A+MG SGAGK+TL++++AG +GSI ++ + +S ++N++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81
Query: 963 HSPLVTVYESLLYSAWLRLPPEVD-SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021
+ L TV +++ L L P + + ++ + + + V + L LP LS
Sbjct: 82 FAHL-TVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADY---LDRLPE--QLSG 131
Query: 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPS 1079
QR+R+ +A LV I+ +DEP S LD ++ VK E RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 875 SVDMPQEMKLQGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928
V + E++ + V+ D+ L +G++ RPG AL+G SGAGK+TL +L
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPAL-DGLNLTVRPGETVALVGPSGAGKSTLFQLL--L 387
Query: 929 KTGGYITGSITISGY----LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE 984
+ +G I + G L E R++ + + + +V E++ Y E
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA--ASVMENIRYGRPDATDEE 445
Query: 985 VDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044
V++ R E + L + +G GV+ LS QR+R+ IA ++ + I+ +DE
Sbjct: 446 VEAAARAAHAHEFIS--ALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDE 502
Query: 1045 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
TS LDA + +V + ++ T+ GRT + H+
Sbjct: 503 ATSALDAESEQLVQQALE-TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 44/185 (23%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YL 944
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 945 KKQETF---TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
KK + R+ G Q P+ ++Y+++ Y P + K ++EI+E
Sbjct: 73 KKIDVVELRRRV-GMVFQKPNPFPM-SIYDNIAYG------PRLHGIKDKKELDEIVE-- 122
Query: 1002 ELNPLRQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+SL L V GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 ------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 1051 ARAAA 1055
A
Sbjct: 177 PIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 882 MKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS 941
M+L V L +S R G + L+G +GAGK+TL+ +AG G +GSI +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 942 GYLKKQETFT-----RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
G + E ++ R Y Q + V++ L L P + +E + E
Sbjct: 56 G--QPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 997 IMELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSG 1048
+ E + L +G V+ LS E QR RL AV L NP+ ++ +DEP +
Sbjct: 110 VAEALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 1049 LDARAAAIVMRTVKNTVETGRTVVCTIH 1076
LD A + R + + G VV + H
Sbjct: 164 LDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---GSITISGYLKKQET 949
LNG+S G ++G +GAGK+TL++ +AG T G I +T K+
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 950 FTRI-----SGYCEQNDIHSPLVTVYESLLYSAWLR-----LPPEVDSETRKMFIEEIME 999
R+ +G P +T+ E+L A R L ++ R F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 1000 LVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 1059 R-TVKNTVETGRTVVCTIH 1076
T K E T + H
Sbjct: 189 ELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 48/251 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEF 235
T+L V +R GS+ L+GP +GKTTLL A+ G L + +G V G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
R A + Q + E VR+ + R RFD TE D+ E ++ +
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRAAVERAME-RTGVA 130
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
F T +SGG+++RV ALA
Sbjct: 131 QFADRPVTS--------------------------------LSGGERQRVLLARALAQAT 158
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE + LD + + + +R+ + +G ++ + D+++LL+DG
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGR 216
Query: 411 IVYLGPRELVL 421
+ GP VL
Sbjct: 217 VRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-08
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LK--KQET 949
+LNG+S G A++G SGAGK+T++ +L +GSITI G ++ Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 950 FTRISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
R G Q ND T+ ++ Y P+ +E + E +++
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAAAEAAQIH 379
Query: 1005 PLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
QSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 380 DFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI 438
Query: 1058 MRTVKNTVETGRTVVCTIHQPS 1079
++ V GRT + H+ S
Sbjct: 439 QAALRE-VSAGRTTLVIAHRLS 459
|
Length = 497 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 8e-08
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG--YLKKQETFTR 952
L V+ PG + AL+G +GAGK+TLM VL+G G+ITI+ Y K
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 953 ISG----YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
G Y E + I +TV E+L R T+K+ I++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 1009 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDG 60
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----YLKKQET 949
+L+GV + R G L L+G +GAGKTTL+ + G T G++ ++G L +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 950 FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
R++ + + + V E R +++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
P V+ LS +R+R+ +A L ++ +DEPT+ LD + V+ V+
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1068 GRTVVCTIH 1076
G+T V IH
Sbjct: 189 GKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-------LKK 946
+L+ VS + G + A++G SG+GK+TL+ +L G T +G + +G K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 51/226 (22%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GSITISGYLKKQET 949
+LN +S + R G A+ G SG GK+TL+ ++A T G + G +S K E
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTL--KPEA 74
Query: 950 FTRISGYCEQNDIHSPLV--TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
+ + YC Q L TV ++L++ +R R ++ +
Sbjct: 75 YRQQVSYCAQT---PALFGDTVEDNLIFPWQIR----NRRPDRAAALDLLAR-------- 119
Query: 1008 QSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIV 1057
LP ++ LS +++R+ + L P I+ +DE TS LD ++
Sbjct: 120 ---FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 1058 MRTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQK---IKDGC 1100
R V+ E V+ H D+AI K ++ G
Sbjct: 177 HRYVR---EQNVAVLWITHDK--------DQAIRHADKVITLQPGH 211
|
Length = 223 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 880 QEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIT 939
M+L V E L +SG R G + L+G +GAGK+TL+ +AG +G +GSI
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 940 ISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
+G + R Y Q + V+ L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLND 108
Query: 997 IMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1050
+ + L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIH 1076
+ + R + + G +V + H
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 902 FRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQETFTRISGYCE 958
F +TA +G +GAGKTT + +L G +G + G I L + + G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL---DAVRQSLGMCP 1009
Query: 959 QNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018
Q++I +TV E +L+ A L+ E ++ +E ++E L+ R
Sbjct: 1010 QHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQD 1061
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV---ETGRTVVCTI 1075
LS +++L++A+ V + ++ +DEPTSG+D + R++ + + +GRT++ +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYRSGRTIIMST 1117
Query: 1076 HQ 1077
H
Sbjct: 1118 HH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 75/263 (28%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
ILK +S ++ G ++GP SGK+TL L G SG V +G ++ +++ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQ 407
Query: 240 VAAYISQHDNHIGEM---------TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP 290
+ HIG + T+ E +A RF
Sbjct: 408 LGR-------HIGYLPQDVELFDGTIAENIA----------RFG---------------E 435
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
+ D + ++AA L + +L L DT +G+ +SGGQ++R+ A
Sbjct: 436 EADPEKVIEAA--------RLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRI--ALA 484
Query: 351 LALF-------MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI-----SLLQPAPETYD 398
AL+ +DE ++ LDS + +I GT V+ S L
Sbjct: 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV----- 538
Query: 399 LFDDIILLSDGLIVYLGPRELVL 421
D I++L DG I GPRE VL
Sbjct: 539 --DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 47/202 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 233
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGHN+ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ ++ + Q N M++ E + + R +G+ DK+ D
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIK---------DKQ------VLDEA 124
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++ +K A+ + + L D L G+SGGQ++RV LA
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSAL-------------------GLSGGQQQRVCIARVLAT 165
Query: 353 ----LFMDEISNGLDSSTTFQI 370
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 32/211 (15%)
Query: 868 TFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVE--------DVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 928 RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY----SAWLRL-- 981
++ +G I I G T I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 982 PPEVDSETRKMF-IEEIMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1039
P D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1040 IFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
+ +DE TS LD A V + + + GRT
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YL 944
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 945 KKQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
K + + G Q P +++E++ Y LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 1003 L-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 1058 MRTVKNTVETGRTVVCTIH 1076
+ + ++ T+V H
Sbjct: 186 EELI-HELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 909 ALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS---GYCEQN---DI 962
A++G +GAGK+TL G +GS+ I G +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022
SP TV + + + + +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQ 1077
++KR+ IA + P ++ +DEPT+GLD + ++ + + ET G TV+ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS- 954
VS PG + ++G SG+GK+TL+ LAGR G+ T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 955 -----------GYCEQNDIH------SPLVTVYESLL-----YSAWLRLPPEVDSETRKM 992
G+ QN S + E L+ + +R T +
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-------ATAQD 130
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
++EE VE++P R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 WLEE----VEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 1053 AAAIVMRTVKNTV-ETGRTVVCTIH 1076
A ++ ++ V + G V+ H
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (129), Expect = 2e-07
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGSITISGYLKKQET--FTRISGYC 957
+ G TAL+G +G+GK+TL+ L G + T G + G I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPE--VDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015
Q P ++E + P + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP- 142
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ ++ ++G+TVV
Sbjct: 143 -FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1076 H 1076
H
Sbjct: 202 H 202
|
Length = 288 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 22/169 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSITISG---YLKKQE 948
L G+ F +TAL+G SG GK+T + L G ITG++++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 949 T--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL--- 1003
+ G Q P ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 1004 --NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 20/193 (10%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ 947
+ D+ LL +S G L L G +GAGKTTL+ ++AG G I K+
Sbjct: 11 YHDQP-LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKK 67
Query: 948 ETFTRISGYC---EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ T C ++ I +P +T+ E+ LY ++ + I E+ L L
Sbjct: 68 DLCTYQKQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLE 118
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
L GL LS+ Q++++ + ++ + +DEP LD + ++ ++
Sbjct: 119 HLIDYPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173
Query: 1065 VETGRTVVCTIHQ 1077
G V+ T HQ
Sbjct: 174 RAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 64/273 (23%)
Query: 164 SLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG 223
S+ ++ I+P K L+ +S ++ G ++GP SGK+TL + G SG
Sbjct: 318 SVENVTIVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSG 373
Query: 224 RVTYNGHNMDEFEPQ---RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELD 280
V +G ++ +++ + + Y+ Q D + TV E +A RF
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RFG------ 416
Query: 281 KRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGG 340
EN DP+ + EA L + +L L DT++G +SGG
Sbjct: 417 --EN-----ADPEKII----------EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGG 458
Query: 341 QKRRVTTGPALALF-------MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI-----S 388
Q++R+ A AL+ +DE ++ LD + N+I+ + T V+ S
Sbjct: 459 QRQRI--ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS 515
Query: 389 LLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421
LL D I++L DG I G R+ VL
Sbjct: 516 LLGCV-------DKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG ++G
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 57/256 (22%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
+LKDVS I G ++GP SGK+T+L L D S SG + +G ++ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIRE-- 67
Query: 237 PQRVAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
++ IG + ++T+ F+ N +PD
Sbjct: 68 -------VTLDSLRRAIG-VVPQDTVLFND---------------TIGYNIRYGRPD--- 101
Query: 295 DVFMKAAATEGQ--EANVLTDYYLKVLGLDICADTLVGDEMIRG--ISGGQKRRVTTGPA 350
AT+ + EA + K++ DT+VG+ RG +SGG+K+RV A
Sbjct: 102 -------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKLSGGEKQRVAIARA 151
Query: 351 L-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
+ L +DE ++ LD+ T +I ++R + G I + + D II+
Sbjct: 152 ILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIVIAHRLSTIVNA-DKIIV 207
Query: 406 LSDGLIVYLG-PRELV 420
L DG IV G EL+
Sbjct: 208 LKDGRIVERGTHEELL 223
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 66/250 (26%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
LK+ + + G +LG SGK+TLL LAG D G +T NG + + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 239 RVAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ IS H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQRVHLFSGTLRDNLRLA-------------------------NPDAS-DE 442
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+ AA + L + +T +G E R +SGG++RR+ ALA
Sbjct: 443 ELWAAL----QQVGLEKL---LESAPDGLNTWLG-EGGRRLSGGERRRL----ALARALL 490
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDD 402
+DE + GLD T Q++ + + H T ++ T+ L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDR 541
Query: 403 IILLSDGLIV 412
II+L +G I+
Sbjct: 542 IIVLDNGKII 551
|
Length = 573 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 907 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YLKKQETFTRIS-G 955
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 956 YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015
Q P+ ++YE++ Y LR D + +E + L + +
Sbjct: 87 MVFQKPNPFPM-SIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 F-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 50/242 (20%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T L D+S + G + LLGP +GKTT + + G + SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
Y+ + +M V + L + A+ +G+
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE-------------------------- 103
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----L 353
EA D +L+ L L A ++ + +S G +++V A+ L
Sbjct: 104 --------EARRRIDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
+DE +GLD + + IR+ G VI +L D ++LL+ G V
Sbjct: 151 ILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
Query: 414 LG 415
G
Sbjct: 209 YG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 57/220 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L DVS IR G L GP +GKTTLL L G L S G+V G +++ ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQ 73
Query: 240 VAAYISQH------DNHI-GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+ + + D + + TV E +A +G R E+ +R A
Sbjct: 74 LPL-LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
L+ +GL+ AD +SGG+++RV A+
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
L DE + LD + +I++ + + ++ GT VI
Sbjct: 154 NSPPLLLADEPTGNLDPDLSERILD-LLKRLNKR-GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT-- 951
+L+GV+ +TALMG SG+GK+TL+ V R Y ++ YL Q+ F
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 952 ------RISGYCE-QNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF--IEEIMELVE 1002
R+ + N I P ++++E++ L+L V S+ +++ + +E +
Sbjct: 77 VIELRRRVQMVFQIPNPI--PNLSIFENVALG--LKLNRLVKSK-KELQERVRWALEKAQ 131
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
L + + P LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 132 LWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-07
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSITISGY-L 944
+ K L ++ G AL+G SGAGKT+L++ L G ++ GS+ I+G L
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIEL 413
Query: 945 KK--QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE--IMEL 1000
++ E++ + + QN P T+ +++L P+ E + +E + E
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEF 467
Query: 1001 VELNPLRQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ L P GL +GLS Q +RL +A L+ ++ +DEPT+ LDA +
Sbjct: 468 LPLLPQ-----GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522
Query: 1056 IVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088
+VM+ + N +T + HQ ++ +D+
Sbjct: 523 LVMQAL-NAASRRQTTLMVTHQ--LEDLAQWDQ 552
|
Length = 588 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-SITISGYLKK 946
+N A G + +MG+SG+GK+T + +L AG+ +I G +I ++
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+E + G Q P +T+ ++ L + RK E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 1007 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
VGL LS ++R+ +A L A P I+ MDE S LD
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 910 LMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969
L+G SGAGK++L+ VL + +G++ I+G F++ D+ + V
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAG---NHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 970 YESLLYSAWLRL---------PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020
++ Y+ W L P V ++ + +L++ L+ P LS
Sbjct: 88 FQQ--YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLS 143
Query: 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
Q++R+ IA L+ P ++ DEPT+ LD A ++ +K ETG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN---M 232
+LKD+S I PG ++GP SGK+TL+ L D + SG + +G + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
++ +SQ D + T+RE +A G
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL------------------------GRPDAT 431
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
D ++ E + L DT+VG E +SGGQ++R+ A+A
Sbjct: 432 DEEIEEALKLANAHEF---------IANLPDGYDTIVG-ERGVNLSGGQRQRL----AIA 477
Query: 353 ---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403
L +DE ++ LD+ T I +++++ + T +I + + T D I
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRI 533
Query: 404 ILLSDGLIVYLGPRE 418
I+L +G IV G E
Sbjct: 534 IVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ 947
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDG----- 75
Query: 948 ETFTRISGYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKMFIEEIMELV----- 1001
IS Y E +HS + V E +L++ L+ ++ E + E
Sbjct: 76 ---KPISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 1002 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1057 VMRTVKNTVETGRTVVCTIHQ 1077
V + + + E RTV+ H+
Sbjct: 189 VQQALYDWPER-RTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGSITISGYLKK 946
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL--- 1003
R G Q P ++YE++ Y R+ E + +T +E+ ++ L
Sbjct: 82 VVALRRKIGMVFQRPNPFP-KSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDE 138
Query: 1004 --NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ L S + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 139 VKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 40/242 (16%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+ V+ RP + ALMG +GAGK+TL+ L G +K +GSI G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 953 ISGYCEQNDI---HSPLVTVYE-SLLYSAWL-RLPPE---VD-----SETRKMFIEEIME 999
S +N I H L V + S++ + WL R P + VD +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 1000 L-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
L ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 1059 RTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDGCNPATWMLEVTARSQELAL 1118
++ E G +V H+ +IF+ DE + ++DG AT L + +A+
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDE----ITILRDGQWIATQPLAGLTMDKIIAM 229
Query: 1119 GV 1120
V
Sbjct: 230 MV 231
|
Length = 491 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 23/196 (11%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSI-------TISGYLK 945
++ VS + G + ++G SGAGKTTL ++AG T G + + T G
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
+ R G Q P TV ++L + L LP E+ K I M +
Sbjct: 360 RGRA-KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1066 -----ETGRTVVCTIH 1076
E +T + H
Sbjct: 471 LKAREEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 58/250 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
+ V+ +R G + LGP +GKTT + L L + SG G+++ EP++V
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVR-EPRKV 64
Query: 241 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
I Q+ + ++T RE L R G+ E ++R E
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-----EAEERAEE------------ 107
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----A 352
L++ L AD VG SGG +RR+ +L
Sbjct: 108 -----------------LLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDV 145
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSDGL 410
LF+DE + GLD T +I I L G ++ E L D I ++ G
Sbjct: 146 LFLDEPTTGLDPRTR----RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGR 201
Query: 411 IVYLG-PREL 419
I+ G P EL
Sbjct: 202 IIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG--HNMDEF 235
+ + +S + G + GP GKTTLL LAG L SG V +NG
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSAR 265
EP R Y+ E++ E L F A
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAA 99
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 63/253 (24%), Positives = 97/253 (38%), Gaps = 62/253 (24%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
IL+ VS + G +T +LG GKTTLL L G L SG + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 238 QRVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
+R AY+ Q +TV E L SR K +I
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR----------------KIPDEI 114
Query: 295 -DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++F VL + L G GD +SGGQ++++ AL
Sbjct: 115 YELF-----------PVLKE-MLGRRG---------GD-----LSGGQQQQLAIARALVT 148
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILN---GTAVISLLQPAPETYDLFDDIIL 405
L +DE + G+ S I+ I + I L G A++ + Q +L D +
Sbjct: 149 RPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204
Query: 406 LSDGLIVYLGPRE 418
+ G +V G +
Sbjct: 205 MERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 28/208 (13%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----L 944
EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G++ G L
Sbjct: 12 EDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70
Query: 945 KKQE--------TF---TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF 993
++ F I G Q + + L V R +D +
Sbjct: 71 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS-------YRGQEPLDRFDFQDL 123
Query: 994 IEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+EE + L+++ L V + G S ++KR I V P + +DE SGLD
Sbjct: 124 MEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
A IV V + + R+ + H I
Sbjct: 180 ALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 73/202 (36%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGYLKKQ 947
L V +TA +G SG GK+T + D + G + +TG IT+ G
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG----- 85
Query: 948 ETFTRISGYCEQNDIHSPLV---------------------TVYESLLYSAWLRLPPEVD 986
DI+ P + ++YE++ Y P +
Sbjct: 86 ------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG------PRIH 127
Query: 987 SETR-KMFIEEIMELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVA 1035
R K ++EI+E LR++ GL PG +GLS Q++RL IA +
Sbjct: 128 GLARSKAELDEIVE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAV 180
Query: 1036 NPSIIFMDEPTSGLDARAAAIV 1057
+P +I MDEP S LD A A V
Sbjct: 181 SPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 57/235 (24%)
Query: 866 SLTFDEV--VYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 923
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 924 VLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983
+G+ITI+GY T +G + + V++ P
Sbjct: 52 HFNALLKPS--SGTITIAGY-----HITPETGNKNLKKLRKKVSLVFQF----------P 94
Query: 984 EVDSETRKMFIEEIMELVELNPLR----------QSLVGLPGVSGLSTE----------- 1022
E ++F +++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1023 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
Q +R+ IA + P I+ +DEP +GLD +M+ K+ + G TV+ H
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKA 300
+ Q+ + + +TVRE +A + +L +L K E A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 301 AATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFM 355
+ + ++ ++GL AD G +SGG K+RV AL+ L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 356 DEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415
DE LD+ T + + Q I + V+ + E L D +++L++G +G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-07
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 65/278 (23%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
T LKD+S ++ G LLGP GKTTLL +AG L+ + +G + G ++
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQGGRDITRLP 72
Query: 237 PQ-RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
PQ R + Q +TV + +A+ + +G+G E+ +R E
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-----EVAERVAEL--------- 118
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
L ++GL G +SGGQ++RV ALA
Sbjct: 119 --------------------LDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSP 153
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILN---GTAVISLLQPAPETYDLFDDIILLS 407
L +DE + LD+ ++ +R I L G I + E + D I++++
Sbjct: 154 GLLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN 209
Query: 408 DGLIVYLG-PRELVLDFFESMGFKCPERKGVADFLQEV 444
G+I +G P+E+ ++ P VADF+ EV
Sbjct: 210 HGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 65/247 (26%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L ++ I G L+GP +GK+TLL + + L SG + NG ++ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 241 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
Y+ + D + + V E +AF+ GV R E+ KR A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L+++GL + +SGG+++RV A+
Sbjct: 121 ----------------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD----II 404
L DE + LD TT++I+N + + I+ T V+ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVV-----ATHAKELVDTTRHRVI 207
Query: 405 LLSDGLI 411
L G +
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 233
+K+V+ ++ G++ L+GP GKTT L A+ L +V+GR+ +G ++ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+R + Q N M+V + + + G+ R D L E+ +R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+ +K AT G+SGGQ++R+ ALA
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 353 ----LFMDEISNGLDSSTTFQI 370
L MDE ++ LD ++T +I
Sbjct: 166 EPEILLMDEPTSALDPASTARI 187
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFT 951
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I T L ++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 952 RISGYCEQNDIHSPL---VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R G+ Q H L +TV++++ + L + P + ++ +L+E+ L
Sbjct: 74 RKVGFVFQ---HYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 129 LADRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 70/288 (24%), Positives = 118/288 (40%), Gaps = 82/288 (28%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHN-MD 233
+LK +S + G + +++GP SGK+TLL L G + D SG +T +G + D
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVGD 68
Query: 234 EFEPQRVAAYIS---QHDNHIGEMTVRE--TLAFSARCQGVGSRFDMLTELDKRENEAGI 288
+ + ++ + Q N +TV E TLA ++ K
Sbjct: 69 KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLS----- 109
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
KA A E L+ +GL AD D +SGGQ++RV
Sbjct: 110 ----------KAEAREKALE------LLEKVGL---AD--KADAYPAQLSGGQQQRVAIA 148
Query: 349 PALA------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-F- 400
ALA LF DE ++ LD ++++ ++ G +I + T+++ F
Sbjct: 149 RALAMDPKVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMIIV------THEMGFA 199
Query: 401 ----DDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEV 444
D +I + G I+ GP E +FF++ P+ + FL ++
Sbjct: 200 REVADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 38/193 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
IL+ ++ +RPG + ++GP SGK+TL LAG+ D + G V + G ++ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 239 RVAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
A GE +AF GV ++F + T L+ + G +P +D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDR 117
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR------VTTGPA 350
F E K+ L + D L + G SGG+K+R P
Sbjct: 118 FDFQDLMEE-----------KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 351 LALFMDEISNGLD 363
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L GV+ + G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
+ QN P +TV E+ + A R+ P++ R+ +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 34/200 (17%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
ILKD+S PG+ +LG +GK+TLL +AG +D +NG P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FNGEAR--PAPG 67
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
Y+ Q TVRE + +GV D L + + +PD D+D +
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDALDRFN-EISAKFAEPDADMDALL 121
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTL---VGDEMIRGISGGQKRRVTTGPALA--- 352
A E QE D + L+I D L D + +SGG++RRV AL
Sbjct: 122 AEQA-ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRV----ALCRLL 176
Query: 353 ------LFMDEISNGLDSST 366
L +DE +N LD+ +
Sbjct: 177 LSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR 952
LL+ ++ RPG + G SGAGKT+L+ LAG + GS I
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI------------ 450
Query: 953 ISGYCEQNDI-------HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
+ + + P T+ E+L Y P+ + ++ V L
Sbjct: 451 --SMPADSALLFLPQRPYLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGD 501
Query: 1006 LRQSLVGL-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
L + L LS +++RL A L+ P +F+DE TS LD + + +K
Sbjct: 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561
Query: 1065 VETGRTVVCTIHQPSIDIFES 1085
+ TV+ H+P++ F S
Sbjct: 562 L-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 59/202 (29%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L + + VL + GVSG+GK+TL+ G Y +G + +L K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKFS------ 58
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN----PLRQSL 1010
+ L+ FI+++ L+++ L Q L
Sbjct: 59 --------RNKLI-------------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
S LS + +R+ +A EL + P ++ +DEP++GL + ++ +K ++ G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1069 RTVVCTIHQPSIDIFESFDEAI 1090
TV+ H D+ S D I
Sbjct: 140 NTVILIEHNL--DVLSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGSITISG---YLKKQETF 950
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 951 T--RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLR 1007
R G Q P +++ ++++ A L+L + + +E+ + L N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 34/195 (17%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGSITISGYLKK------QETFTRIS 954
R G + L+G +G GK+T + +LAG+ G L + Q FT++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL- 82
Query: 955 GYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKM--------FIEEIMELVELNP 1005
+V Y L+ P V + ++ ++E+++ +EL
Sbjct: 83 ----LEGDVKVIVKPQYVDLI-------PKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
+ + LS + +R+ IA L + F DEP+S LD + R ++
Sbjct: 132 VLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 1066 ETGRTVVCTIHQPSI 1080
E V+ H ++
Sbjct: 187 EDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL------ 1006
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 32/223 (14%)
Query: 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 925
++ FD V Y+ + Q +H+ V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHD--------VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 926 AG--RKTGGYIT-GSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY---ESLLYSAWL 979
+ T G +T ITI+ K ++ + R + + V+ ES L+ +
Sbjct: 54 NALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFEDTV 103
Query: 980 RLPPEVDSETRKMFIEEIME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1034
+ KM ++E+ L++L R + P +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILA 161
Query: 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIH 1076
NP II +DEPT+GLD ++ VMR +K+ + +T++ H
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 44/180 (24%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YL 944
L ++ +TAL+G SG GK+T + D++ K I G + + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDIYK 74
Query: 945 KK---QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+ R+ G Q P+ ++Y+++ Y P K ++EI+E
Sbjct: 75 SDIDVNQLRKRV-GMVFQQPNPFPM-SIYDNVAYG------PRTHGIKDKKKLDEIVE-- 124
Query: 1002 ELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L+ + + L GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 125 --KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 884 LQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943
L G + VL VS + G L+G SG GK+TL +L G + G+++ G
Sbjct: 17 LFGAKQRAPVL-TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQ 73
Query: 944 ------LKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIE 995
K++ F R Q+ + P +TV + + LR +D +K I
Sbjct: 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIA 131
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
E++++V L + LP LS Q +R+ IA L P +I +DE S LD A
Sbjct: 132 ELLDMVGLRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 1056 IVMRTVK 1062
+++ ++
Sbjct: 188 VILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 58/186 (31%)
Query: 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS-- 954
VS PG + ++G SG+GKTTL++ L+ R G + + +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEA 81
Query: 955 ----------GYCEQN-------------DIHSPLVTV----YESLLYSA--WLRLPPEV 985
G+ Q+ +I L+ V Y + +A WL
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWL------ 135
Query: 986 DSETRKMFIEEIMELVELNPLRQSLVGLPGV-SGLSTEQRKRLTIAVELVANPSIIFMDE 1044
E VE++ R + LP SG +QR L IA LV +P ++FMDE
Sbjct: 136 -------------ERVEIDAAR--IDDLPTTFSG-GMQQR--LQIARNLVTHPRLVFMDE 177
Query: 1045 PTSGLD 1050
PT GLD
Sbjct: 178 PTGGLD 183
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGSITI 940
+L +L VS G AL G SGAGK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 941 SG----YLKKQETFTRISGYCEQNDIHSPLVT----VYESLLYSAWLRLPPEVDSETRKM 992
S ++++ GY Q P V+ V E LL P E +
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARARARE 131
Query: 993 FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
L LN + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 132 L------LARLN-IPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 21/109 (19%), Positives = 41/109 (37%)
Query: 1271 IPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAA 1330
+ L V + +I+ + G L L + G + ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1331 IVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFG 1379
+V ++ L + F G + P P +P + +W + P + GL +G
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 60/240 (25%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
IL ++S +R G L+ GP GK+TLL +A + + SG + + G ++ +P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 239 RV---AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
+Y +Q G+ TV + L F + + +PDP I
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-------------------NQQPDPAI- 116
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL---- 351
F+ +L + I +SGG+K+R++ L
Sbjct: 117 -FLDDLERFALPDTIL-------------------TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 352 -ALFMDEISNGLDSSTTFQIVNSIRQNIHILN---GTAVISLLQPAPETYDLFDDIILLS 407
L +DEI++ LD S VN I IH AV+ + E D +I L
Sbjct: 157 KVLLLDEITSALDESNK-HNVNEI---IHRYVREQNIAVLWVTHDKDEINHA-DKVITLQ 211
|
Length = 225 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGV 269
R+ Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHS-- 964
LT L+G SG GKTT++ ++AG +T +G I + G + T + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 965 ------PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018
P +TV+E++ + ++ P + R + E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQR-----KPHQ 144
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 37/212 (17%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG--- 942
G HE +L GVS G + +++G SG+GK+T + + + GSI ++G
Sbjct: 17 GEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEI 70
Query: 943 YLKKQETFTRISGYCEQ-NDIHSPLVTVYESLLYSAW---------LRLPPEVDSETRKM 992
LK+ + Q + + L V++ ++ W + P V ++
Sbjct: 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQH--FNLWSHMTVLENVIEAPVHVLGVSKAE 128
Query: 993 FIEEIMELVELNPLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045
IE + L + VG+ P + LS Q++R+ IA L P ++ DEP
Sbjct: 129 AIERAEKY-----LAK--VGIAEKADAYP--AHLSGGQQQRVAIARALAMEPEVMLFDEP 179
Query: 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
TS LD V++ +++ E GRT+V H+
Sbjct: 180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 907 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGSITISGYLKKQETFTRISGYC 957
+TA++G SG GKTTL+ D + G + G Y G L E ++ G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV-GMV 89
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLRQSLVGLPGV 1016
Q P+ ++Y+++ + R+ +EE ++ L + ++ L PG
Sbjct: 90 FQKPTPFPM-SIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 146 R-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
LS Q++R++IA L P ++ DEPTS LD V+R ++ E G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 45/204 (22%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L V+ G TA +G +G+GK+T+M +L G GS+ + T I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP--------- 1005
+ DI V L++ PE ++F E +++ V P
Sbjct: 73 STSKNKDIKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVSQEE 120
Query: 1006 ----LRQSLVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
R+ L L G+S LS Q +R+ IA L P I+ +DEPT+GLD +
Sbjct: 121 AEALAREKLA-LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
Query: 1053 AAAIVMRTVKNTVETGRTVVCTIH 1076
+M K ++G T+V H
Sbjct: 180 GRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYL 944
H K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ +
Sbjct: 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ 73
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ ++ E + S + TV E+L + R F E I + EL
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRM-TVEENLAMGGFF--------AERDQFQERIKWVYELF 124
Query: 1005 P-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P L + + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +
Sbjct: 125 PRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFD 178
Query: 1064 TVETGRTVVCTI 1075
T+E R TI
Sbjct: 179 TIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 59/255 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L +S +I PG L+G SGK+TL+ + + SG++ +GH++ ++ +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 241 AAYISQ--HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
++ D + T+ +A+ Q + +
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE-------------------------I 439
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----AL 353
+ A A D+ V L + DT +G+ + +SGGQ++R+ AL L
Sbjct: 440 ERAL---AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPIL 491
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILLS 407
+DE ++ LD+ + + ++ ++ G T VI S ++ A D I+++
Sbjct: 492 ILDEATSALDNESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMD 541
Query: 408 DGLIVYLGPRELVLD 422
DG IV G +L
Sbjct: 542 DGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 39/221 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSITISGYLKKQETFT- 951
L+G + PG + AL+G +GAGK+T+M VL TG Y GSI YL K+ TF
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVL----TGIYTRDAGSIL---YLGKEVTFNG 72
Query: 952 -RISGYCEQNDIHSPL-----VTVYESLLY-----SAWLRLPPEVDSETRKMFIEEIMEL 1000
+ S IH L +T+ E++ + + R+ + +KM+ E L
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKLL 126
Query: 1001 VELNPLRQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
LN S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 127 ARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181
Query: 1059 RTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
R ++ GR +V H+ +IFE D+ V +DG
Sbjct: 182 RVIRELKSQGRGIVYISHRLK-EIFEICDD----VTVFRDG 217
|
Length = 501 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
+L+ VS +PG + L+G +GAGK+TL+ V+ G + G +K+ RI
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-----GLVAPD---EGVIKRNGKL-RI 69
Query: 954 SGYCEQN---DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
GY Q D PL TV + +LRL P +K I ++ V+ L
Sbjct: 70 -GYVPQKLYLDTTLPL-TV------NRFLRLRPGT----KKEDILPALKRVQ----AGHL 113
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 114 IDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 47/202 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 233
L D++ I +T L+GP GK+T L L L S++K+ G V +G N+ D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E ++ + Q N M++ + +A+ R G+ + ELDK A
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDK----KELDKIVEWA------- 127
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K AA D D L + +SGGQ++R+ +A
Sbjct: 128 ----LKKAAL-----------------WDEVKDDLKKSAL--KLSGGQQQRLCIARTIAV 164
Query: 353 ----LFMDEISNGLDSSTTFQI 370
+ MDE ++ LD +T +I
Sbjct: 165 KPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 70/261 (26%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL---DSSLKVSGR-VTYNGHNMDEFE 236
LK ++ G M LLGP +GK+TL L G L + + G + Y+ ++ E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ V D+ + TV E +AF G+ E++KR EA
Sbjct: 78 -KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA---------- 121
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL--- 353
+KA EG E ++ +SGGQK+RV LA+
Sbjct: 122 -LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKPE 157
Query: 354 --FMDEISNGLDSSTTFQIVNSIRQNIHILNG---TAVISLLQPAPETYDL------FDD 402
+DE ++GLD QI+ ++ LN T +IS T+D+ D
Sbjct: 158 IIVLDEPTSGLDPMGASQIMKL----LYDLNKEGITIIIS-------THDVDLVPVYADK 206
Query: 403 IILLSDGLIVYLG-PRELVLD 422
+ ++SDG I+ G P+E+ D
Sbjct: 207 VYVMSDGKIIKEGTPKEVFSD 227
|
Length = 275 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV-SGRVTYNGHNMDEFEPQ 238
ILK V+ I+ G + L+GP SGK+TL + G +V G + + G ++ + P+
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 184 VSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVA-- 241
+S +R G + L+GP +GK+TLL +AG L SG + + G ++ + +A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 242 -AYISQHDNHIGEMTVRETLAFS----ARCQGVGSRFDMLTEL 279
AY+SQ M V + L R + V S + + E
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEA 113
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 54/248 (21%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N N ++ + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 241 A----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID- 295
A I Q + I E+TV E L + R LT + G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL-- 353
M+ A L +GL + D V + +S K+ + L L
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 354 ---FMDEISNGLDSSTT---FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
MDE ++ L + F I+N +R+ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 408 DGLIVYLG 415
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 56/205 (27%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-- 237
IL ++S +R G + GP GK+TLL +A L S SG + + G ++ +P
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
Q+V +Y +Q G+ TV + L F + + R D +D
Sbjct: 75 YRQQV-SYCAQTPALFGD-TVEDNLIFPWQIR--NRRPD---------------RAAALD 115
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT------TGP 349
+ + A L D L + I +SGG+K+R+ P
Sbjct: 116 LLARFA---------LPDSIL--------------TKNITELSGGEKQRIALIRNLQFMP 152
Query: 350 ALALFMDEISNGLDSSTTFQIVNSI 374
+ L +DEI++ LD S I I
Sbjct: 153 KI-LLLDEITSALDESNKRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 5e-06
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSITISGYLKKQ 947
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 948 ETFTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
T R G Q H L+ TV+ ++ LP E+D+ + ++ EL+ L
Sbjct: 77 LTKARRQIGMIFQ---HFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLAL 127
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
L P S LS Q++R+ IA L +NP ++ DE TS LD ++ +K
Sbjct: 128 VGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK- 184
Query: 1064 TVETGRTVVCTI 1075
E R + TI
Sbjct: 185 --EINRRLGLTI 194
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 10/193 (5%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSITISGYL 944
H +L+ + G + ++G SG+GK+TL+ + L +G I + ++
Sbjct: 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK 69
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ + +G Q P +T E++++ P V +++ ++ EL+
Sbjct: 70 VDERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKV 124
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1064
L + P S LS Q++R+ IA L P ++ DEPTS LD V++ +++
Sbjct: 125 GLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 1065 VETGRTVVCTIHQ 1077
E G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 47/203 (23%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL------AGRKTGGYITGSITISGY----L 944
L +S + +PG ++G +G+GK++L+ L + GSI I G +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS--------GSILIDGVDISKI 71
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR--LPPE---VDSETRKMFIEEIME 999
+ +RIS Q + +L+S +R L P D E + + +E
Sbjct: 72 GLHDLRSRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALE 114
Query: 1000 LVELNPLRQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
V L +SL GL V LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 1054 AAIVMRTVKNTVETGRTVVCTIH 1076
A++ +T++ TV+ H
Sbjct: 175 DALIQKTIREAF-KDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 65/271 (23%)
Query: 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH 230
LPT L L +VS I G ++G SGKTT + L L L +G + +
Sbjct: 16 LPT---ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFK 69
Query: 231 NMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKREN------ 284
+ ++ + + I + + + + E+ +R
Sbjct: 70 D-EKNKKKTKEKEKVLEKLVIQKTRFK--------------KIKKIKEIRRRVGVVFQFA 114
Query: 285 -----EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR---G 336
E I + DI + +EA Y++++GLD + R
Sbjct: 115 EYQLFEQTI--EKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFE 165
Query: 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
+SGGQKRRV LA L DE + GLD +I+ I N++ G +I +
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLN-KQGKTIILV-- 221
Query: 392 PAPETYDLFDDI-------ILLSDGLIVYLG 415
T+DL D++ I DG I+ G
Sbjct: 222 ----THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GSITISGYLK 945
LN ++ +TAL+G SG GK+T + D++ G K G + G S
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME--LVE- 1002
E +I G Q + L+++Y+++ Y P++ K ++EI+E L +
Sbjct: 83 ILELRRKI-GMVFQTP-NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKS 134
Query: 1003 --LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
N ++ L LS Q++RL IA L P++I MDEPTS LD + +
Sbjct: 135 ALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 1061 VKNTVETGRTVVCT 1074
+ N E+ ++ T
Sbjct: 193 IINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 69/259 (26%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG---KLDSSLKVSGRVTYNGHNMDEFEP 237
LK +S I GS T LLGP +GK+TLLL L G +KV GR N N
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKWVR- 78
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+V D+ + TV + +AF G+ E+++R EA
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA----------- 122
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL---- 353
LK + + D+ +S GQK+RV LA+
Sbjct: 123 ------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPDV 159
Query: 354 -FMDEISNGLDSS---TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL------FDDI 403
+DE LD T +I++ + G VI T+D+ D +
Sbjct: 160 IVLDEPMAYLDPRGQETLMEILDRLHN-----QGKTVIV------ATHDVDLAAEWADQV 208
Query: 404 ILLSDGLIVYLGPRELVLD 422
I+L +G ++ G + L+ D
Sbjct: 209 IVLKEGRVLAEGDKSLLTD 227
|
Length = 274 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 70/265 (26%)
Query: 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN--------MD 233
+DVS + PG + ++G SGK+TLL LAG+L G TY + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 234 EFEPQRVA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
E E +R+ ++ Q+ M V R +G+R
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR----- 344
+ AT D+ +V +I + D++ R SGG ++R
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 345 -VTTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD----- 398
+ T P L +FMDE + GLD S ++++ +R + L +I T+D
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVAR 213
Query: 399 -LFDDIILLSDGLIVYLGPRELVLD 422
L ++++ G +V G + VLD
Sbjct: 214 LLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 15/184 (8%)
Query: 878 MPQEMKLQ--GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG 932
M ++KL+ VH K + VS F +TA++G SG GK+T+ ++ +
Sbjct: 1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSA 60
Query: 933 YITGSITISG---YLKKQE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDS 987
+TG I + Y + + + R G Q P +++Y++++ A +L V+
Sbjct: 61 RVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNR 118
Query: 988 ETRKMFIEEIMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046
+E ++ V L + ++ L LS Q++RL IA + P +I MDEP
Sbjct: 119 SEADEIVESSLKRVALWDEVKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176
Query: 1047 SGLD 1050
S LD
Sbjct: 177 SALD 180
|
Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGSITISGYLK 945
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP 1005
E F R G Q P+ + L +L P E R + + E+ +
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +++
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1066 ETGRTVVCT 1074
+ ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 40/181 (22%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ 947
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 948 ETFTRISGYCEQNDIH----------SPLVTVYESLLYSAWLRL--PPEVDSETRKMFIE 995
R + SP +TV + + LR+ P +E + IE
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIE 408
Query: 996 EIMELVELNPLRQSLVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
+ E VGL + S QR+R+ IA L+ P +I +DEPTS L
Sbjct: 409 ALEE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457
Query: 1050 D 1050
D
Sbjct: 458 D 458
|
Length = 534 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 8e-06
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 3/187 (1%)
Query: 1196 LTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAG 1255
L FG G + + + + V + + A+ R +
Sbjct: 64 LLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERL 123
Query: 1256 MYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMI---GFEWTAAKFFWYLFFMFFTLLYF 1312
+ S + F + +PYL V S++ G+++ + G + + L + L
Sbjct: 124 LVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATV 183
Query: 1313 TFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYG 1372
+++ A+ V L SG P +P W + + NP+ + +
Sbjct: 184 ALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDA 243
Query: 1373 LFASQFG 1379
L G
Sbjct: 244 LRYVYLG 250
|
Length = 286 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLL---LALAGKLDSSLKVSGRVTYNGH 230
R LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 231 NMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP 290
P R + + H+ +M + + F Q + F T LD +
Sbjct: 67 -----MPGRNGPLVPADEKHLRQMRNKIGMVF----QSF-NLFPHKTVLDN------VTE 110
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
P + + M A E + +L ++GL AD D M +SGGQ++RV A
Sbjct: 111 APVLVLGMARAEAEKRAMELL-----DMVGL---ADKA--DHMPAQLSGGQQQRVAIARA 160
Query: 351 LAL-----FMDEISNGLDSSTTFQIVNSIRQ 376
LA+ DE+++ LD +++N IR+
Sbjct: 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-06
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 32/172 (18%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISGYLKKQETFTR 952
L G+S + G AL+G +G GK+TL+ +L T + G I ++G
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNG--------QP 403
Query: 953 ISGYCEQNDIHSPLVTVYESL-LYSAWLR------LPPEVDSETRKMFIEEIMELVELNP 1005
I+ Y E + + V + + L+SA LR P D + E+++ V L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 1006 LRQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
L + GL G G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 23/166 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSITISG-----YLKK 946
+N S G + +MG+SG+GK+TL+ R I G I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+ E + Q+ P TV E++ + ++ P+ + E R E +ELV L
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLE 155
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 156 GYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFT 951
L ++ G L A++G G+GK++L+ L G K G S+++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG----SVSVPG--------- 66
Query: 952 RISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP- 1005
I+ Y Q N T+ E++L+ D E E++++ L P
Sbjct: 67 SIA-YVSQEPWIQNG------TIRENILFGK------PFDEE----RYEKVIKACALEPD 109
Query: 1006 LR------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVM 1058
L + +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 110 LEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 1059 RTVKNTVETGRTVVCTIHQPSIDIFESFDEAI 1090
+ + +T + HQ + + D+ +
Sbjct: 169 NCILGLLLNNKTRILVTHQ--LQLLPHADQIV 198
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 52/261 (19%), Positives = 104/261 (39%), Gaps = 70/261 (26%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFE 236
+LKD++ I+PG ++GP +GKTTL+ L D G++ +G ++
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ + + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 297 FMKAAATEGQEANVLTDYYLKVL--GLDICADTLVGDEMIRG--ISGGQKRRVTTGPALA 352
++AA G ++ L G DT++G+ G +S G+++ + A+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYDLFD 401
L +DE ++ +D+ T I ++ + ++ G I S ++ A D
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------D 205
Query: 402 DIILLSDGLIVYLGPRELVLD 422
I++L DG I+ G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 63/166 (37%)
Query: 205 TTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVA----AYISQHDNHIGEMTVRETL 260
+TLL + G L SG + +G + +++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320
F R + ++ L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 321 LDICADTLVGDEMIRGISGGQKRRVTTGPALA---------LFMDE 357
L D + SGGQK+RV A+A L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRV----AIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 52/253 (20%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
IL D+S + G +T L+GP GK+TLL A L SG V + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 239 RVAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++A ++ QH +TVRE +A+ P +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGR--------------------------SPWLS 106
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
++ + E N + ++ ++ AD + D +SGGQ++R LA
Sbjct: 107 LWGRL----SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSD 408
+ +DE + LD + +++ +R+ LN G V+++L + D +++L++
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE----LNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213
Query: 409 GLIVYLGPRELVL 421
G ++ G E V+
Sbjct: 214 GHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 49/196 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L+D++ + G + ++LGP GKTTLL +AG + G +T +G ++ +R
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
+ Q++ + V++ +AF + GV +R A
Sbjct: 73 --GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM--------QRLEIA------------- 109
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LF 354
+ LK +GL+ I +SGGQ++RV ALA L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 355 MDEISNGLDSSTTFQI 370
+DE LD+ T Q+
Sbjct: 152 LDEPFGALDAFTREQM 167
|
Length = 255 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 64/275 (23%), Positives = 108/275 (39%), Gaps = 65/275 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP--- 237
+ +++ I G +L+GP SGKTT + + ++ + SG + +G ++ E +P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 238 QRVAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
+R Y+ Q IG MTV E +A + ++ +R +E
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPKE-----KIRERADEL-------- 117
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
L ++GLD D +SGGQ++RV ALA
Sbjct: 118 ---------------------LALVGLDPAE---FADRYPHELSGGQQQRVGVARALAAD 153
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409
L MDE LD T Q+ + + G ++ + E + L D I ++ +G
Sbjct: 154 PPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212
Query: 410 LIVYLG-PRELVLDFFESMGFKCPERKGVADFLQE 443
IV +G P E++ P VA+F+
Sbjct: 213 EIVQVGTPDEILRS---------PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 30/161 (18%)
Query: 907 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGSITISG---YLKKQETFT--RISGYCE 958
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 959 QNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV--------EL-NPLRQS 1009
Q P+ ++Y+++ Y P + K +++I+E E+ + L++S
Sbjct: 92 QKPNPFPM-SIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ L G Q++RL IA + P +I MDEPTS LD
Sbjct: 145 ALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQ- 947
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 948 ------ETFTRISGYCEQNDIHSPLVTVYESL---LYSAWLRLP----PEVDSETRKMFI 994
TF + + E I + LV ++ L L+S L+ P E ++ R
Sbjct: 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 995 EEIMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 138 LERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 60/221 (27%), Positives = 90/221 (40%), Gaps = 55/221 (24%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 233
+K+V I G +T L+GP GK+T+L +L L + GRV ++G ++ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E +R + Q N + ++ E +AF AR G D L E R
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLR----------- 136
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
KAA D C D L +E +SGGQ++R+ +A
Sbjct: 137 -----KAAV------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHIL--NGTAVI 387
+ MDE + LD +T + I + +H L N T VI
Sbjct: 172 EPEVILMDEPCSALDPISTLK----IEETMHELKKNFTIVI 208
|
Length = 269 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGSITISG---YLKKQE 948
L+G+S F LTAL+G SG GK+T + L ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 949 --TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+ G Q P +VY+++ Y L++ D E +EE ++ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI--W 134
Query: 1007 RQSLVGLP-GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+++ L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 135 KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI-- 962
G + L+G SG GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 963 --HS----PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
S P +++ E++ Y L++ V E RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
+S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 69/257 (26%), Positives = 108/257 (42%), Gaps = 41/257 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L VS + G A++G +G+GK+TL +L G G+IT+ G + +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 953 IS---GYCEQN-DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
+ G QN D TV + + + E R+ +E + + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMED 132
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
L P LS Q++R+ IA L P II +DE TS LD R V+ TV+ E
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1069 R-TVVCTIHQPSIDIFESFDEA--------IPGVQKIKDGCNPATWMLEVTARSQEL-AL 1118
TV+ H D+ DEA + + +++G P E+ L +
Sbjct: 191 GITVLSITH----DL----DEAAQADRVIVMNKGEILEEG-TPE----EIFKSGHMLQEI 237
Query: 1119 GVDFHNIYKLSDLYRRN 1135
G+D KL +L +RN
Sbjct: 238 GLDVPFSVKLKELLKRN 254
|
Length = 279 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 52/182 (28%)
Query: 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247
+ G L+ G +GKTTLL LAG L SG++ +G + R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD-IDVFMKAAATEGQ 306
H+ G+K D ++ G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 307 EANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNG 361
A + L ++GL DTLV R +S GQK+R+ PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 362 LD 363
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQET--F 950
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I S LK +E
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 951 TRISGYCEQNDIHSPLV--TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
R G Q+ H L+ TVY+++ + L + + R+ + ++ L+ +
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNV--AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
+ L G +++R+ IA +V P+++ DEPT LD + ++R + G
Sbjct: 134 FPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1069 RTVVCTIH 1076
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
IL D+S I+ S T ++G SGK+TL L G + SG + NG ++ + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 240 VAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ +I+ + +I ++ E L A+ + V E+ A IK DI+
Sbjct: 546 LRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQD-----EIWAACEIAEIK--DDIENM 597
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----A 352
TE E ISGGQK+R+ AL
Sbjct: 598 PLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSKV 632
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL---LQPAPETYDLFDDIILLSDG 409
L +DE ++ LD+ T +IVN N+ L +I + L A ++ D II+L G
Sbjct: 633 LILDESTSNLDTITEKKIVN----NLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHG 684
Query: 410 LIVYLGPRELVLD---FFESM 427
I+ G + +LD F+ S+
Sbjct: 685 KIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 30/198 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDG--------VP 544
Query: 953 ISGYCEQNDIHSPLVTV-YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
+ Y + + +H + V E +L+S +R + EEIM + ++
Sbjct: 545 LVQY-DHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 1012 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
P G G LS Q++R+ IA LV P ++ +DE TS LDA ++ +
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS 661
Query: 1063 NTVETGRTVVCTIHQPSI 1080
RTV+ H+ S
Sbjct: 662 ---RASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 45/189 (23%)
Query: 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ 947
+++ VL +S + G AL+G SG+GK+TL+ +L G G IT+ G
Sbjct: 12 EQEQQVL-KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP--- 65
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
V+ E L S L +F + N
Sbjct: 66 -------------------VSDLEKALSSLISVLNQRP-----YLFDTTLRN----N--- 94
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+G S +R+RL +A L+ + I+ +DEPT GLD ++ + ++
Sbjct: 95 ---LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146
Query: 1068 GRTVVCTIH 1076
+T++ H
Sbjct: 147 DKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGSITISGY-LKKQE 948
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 949 TFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R QN + PL T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ ++ +
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+E VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 135 LEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190
Query: 1058 MRTVKNTV-ETGRTVVCTIH 1076
+ ++ V E G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 55/267 (20%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE-----F 235
L +V+ I G L+G SGK+TL+ L G L + SG++ +G ++ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 236 EPQRVAAYISQHDNH-IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
+ ++ + Q+ + + E T+ + +AF G+ E++ R A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
+ ++GLD + D+ +SGGQKRRV +A
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409
L +DE + GLD +I+N I + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 410 LIVYLG-PRELV--LDFFESMGFKCPE 433
G PRE+ ++ ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 955 GYCEQND---IHSPL-----VTVYESL-LYSAWLRLP----PEVDSETRKMFIEEIMELV 1001
E+ IH L ++V E++ L + + +K+ ++ +
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL-AQLK--L 133
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
++NP P V L Q++ + IA L ++ +DEPT+ L A+++ +
Sbjct: 134 DINP------ATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186
Query: 1062 KN 1063
++
Sbjct: 187 RD 188
|
Length = 506 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 52/214 (24%)
Query: 872 VVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 931
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 932 GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL--------LYSAWLRLPP 983
G I I G + PL + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
+ E EEI + ++ G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077
E T+ +D A++ +T++ T T++ H+
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFEPQ 238
L +VS + G + LGP +GK+T + + G L SG V G ++ + E Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 272
R Y+ +H+ +M VRE L F A G+ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-Q 238
+L +V+ I G + L+GP GK+TLL + G L +G + N +D Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 239 RVAAYISQHDNHIGEMTVRETLAFS 263
R + Q ++V + L F+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA 101
|
Length = 213 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 56/195 (28%), Positives = 73/195 (37%), Gaps = 57/195 (29%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
++ D+S I G LLGP +GK+T+ L G + G++T + E P R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 240 VAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ Q DN E TVRE L G F M T RE EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLV------FGRYFGMST----REIEAVIPS--- 118
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L+ L+ AD V +SGG KRR+T AL
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 353 ----LFMDEISNGLD 363
L +DE + GLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 49/208 (23%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMDEF 235
+LK + ++ G + +++GP SGK+TLL + + D SG + +G
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLK---- 63
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKREN--EAGIKPDPD 293
++ +I +R+ + V +F++ L EN A IK
Sbjct: 64 --------LTDDKKNI--NELRQKVGM------VFQQFNLFPHLTVLENITLAPIK---- 103
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
V + A EA L+ +GL A D +SGGQ++RV ALA
Sbjct: 104 --VKGMSKA----EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAM 152
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
+ DE ++ LD ++++ ++
Sbjct: 153 NPKVMLFDEPTSALDPELVGEVLDVMKD 180
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 55/217 (25%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTT---LLLALAGKLDSSLKVSGRVTYN 228
PTR L +L+DVS + PG +T L+GP SGK+T LL G+V +
Sbjct: 22 PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLD 74
Query: 229 GHNMDEFEPQ---RVAAYISQHDNHIGEMTVRETLAFSARCQGVGS-RFDMLTELDKREN 284
G + ++E + + + Q ++++ +A+ G+ S F+ + E ++ +
Sbjct: 75 GKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAH 128
Query: 285 EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344
I TE E +SGGQK+R
Sbjct: 129 AHSF-----ISELASGYDTEVGEKGSQ-------------------------LSGGQKQR 158
Query: 345 VTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQ 376
V AL L +DE ++ LD+ + Q+ ++
Sbjct: 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQET 949
+L +G+S G L + G +GAGKT+L+ +LAG R G + I ++++
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR---RQRDE 71
Query: 950 FTRISGYC-EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
+ + Y Q I +T E+L + RL D E L +
Sbjct: 72 YHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LWE 112
Query: 1009 SL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+L VGL G V LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 113 ALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
Query: 1062 KNTVETGRTVVCTIHQP 1078
E G V+ T HQ
Sbjct: 173 AQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 42/170 (24%), Positives = 59/170 (34%), Gaps = 57/170 (33%)
Query: 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM----DEFEPQRVAAY 243
+ G + + GP +GKT+LL LAG +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 244 ISQHDNHI-GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAA 302
+ H I E+T E L F R G G + L + G+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ----VGLA------------- 120
Query: 303 TEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
G E D+ L S GQ+RRV ALA
Sbjct: 121 --GFE--------------DVPVRQL---------SAGQQRRV----ALA 141
|
Length = 204 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 30/173 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGSITISG--YLKKQET 949
L ++ + +TA++G SG GK+T ++++ +TG + +G LK +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 950 FTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME--LVEL- 1003
+ G Q P ++++++ Y P + K ++EI+E L ++
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 1004 ------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 141 LWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 907 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGY-LKKQETFT---RISGYCEQND 961
+TAL+G SG GK+T + I G + I G +K Q+ + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 962 IHSPLVTVYESLLYSAWLR-LPPEVDSETRKMFIEEIMELVEL-----NPLRQSLVGLPG 1015
+ + ++YE++ Y+ L + D E + + + ++ V L + L+Q+ + L G
Sbjct: 90 VF--VKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
Q++RL IA L P ++ +DEPTS LD ++ ++ +K
Sbjct: 146 ------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSITISGYLKKQET 949
V +N VS R G + +MG+SG+GK+TL+ R I +G + I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDG-----QD 87
Query: 950 FTRIS------------GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEI 997
+S Q+ P TV E++ + ++ V R+ E
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEA 144
Query: 998 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ELV L LS ++R+ +A L +P I+ MDE S LD
Sbjct: 145 LELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 56/251 (22%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL---DSSLKVSGRVTYNGHN---MD 233
ILKD++ I S+ ++GP SGK+TLL L + DS +KV G+V Y G + +D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ ++ + Q N +++ + +A+ + G+ +KRE IK
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIK---------EKRE----IKK--- 128
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGL-DICADTLVGDEMIRGISGGQKRRVTTGPALA 352
+ + L+ +GL D L + +SGGQ++R+T ALA
Sbjct: 129 -----------------IVEECLRKVGLWKEVYDRL--NSPASQLSGGQQQRLTIARALA 169
Query: 353 -----LFMDEISNGLDSSTTFQIVNS--IRQNIHILNGTAVISLLQPAP-ETYDLFDDII 404
L MDE ++ +D IVNS I + I L I ++ P + + D +
Sbjct: 170 LKPKVLLMDEPTSMID------IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVA 223
Query: 405 LLSDGLIVYLG 415
L +G +V G
Sbjct: 224 FLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 50/198 (25%), Positives = 71/198 (35%), Gaps = 61/198 (30%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
++ +S ++ G LLGP +GKTT L L G + +G ++ G +
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG---LTHPDAGSISLCGEPVPSRARH 77
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGS-----RFDMLTELDKRENEAGIKP 290
QRV + Q DN + TVRE L R G+ + L E K EN+A
Sbjct: 78 ARQRVGV-VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA---- 132
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
D + +SGG KRR+T A
Sbjct: 133 ----------------------------------------DAKVGELSGGMKRRLTLARA 152
Query: 351 L-----ALFMDEISNGLD 363
L L +DE + GLD
Sbjct: 153 LVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+ +S + G + GP SGKTTLL LAG S ++GRV NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRD 69
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELD 280
R Y+ ++V E L F + L +
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVG 114
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 53/276 (19%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD---SSLKVSGRVTYNGHNMDEFEP 237
L D+ ++ GS T L+G SGK+TLL L G L + V V + E +P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++V ++ + E TV + +AF + G+ K + E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI----------PKEKAE---------- 121
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
K AA + + + +++ ++ +SGGQ RRV LA
Sbjct: 122 ---KIAAEKLEMVGLADEFW---------------EKSPFELSGGQMRRVAIAGILAMEP 163
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE + GLD +++ + ++IH +G V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 411 IVYLG-PRELV--LDFFESMGFKCPERKGVADFLQE 443
I+ G P ++ +DF ++ P+ AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 47/208 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHN-----MD 233
LK ++ I +T L+GP GK+T L L L S+K+ G V +G + +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ ++ + Q N M++ + +A+ R G+ + +LD+ ++
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDK----KKLDEIVEKS------- 126
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K AA D D L + G+SGGQ++R+ ALA
Sbjct: 127 ----LKGAAL-----------------WDEVKDRLKKSAL--GLSGGQQQRLCIARALAV 163
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
L MDE ++ LD +T +I I++
Sbjct: 164 EPEVLLMDEPTSALDPISTLKIEELIQE 191
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGSITISG--YLKKQE 948
+ G+S G AL+G SG+GK+ +++ +L + +GSI G L E
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 949 -TFTRISGYCEQNDIH----------SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEI 997
+ G N I +PL T+ L LRL + +
Sbjct: 85 RQLRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSRAAAR---ARA 135
Query: 998 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
+EL+EL VG+P LS QR+R+ IA+ L P ++ DEPT+ L
Sbjct: 136 LELLEL-------VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1050 D 1050
D
Sbjct: 189 D 189
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 909 ALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG---YLKKQE------TFTRISGYCEQ 959
+MG SG+GK+TL+ VL R Y I + G Y K + G Q
Sbjct: 40 GIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97
Query: 960 NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019
P +++Y+++ Y L+ + K +EE + V L + P S L
Sbjct: 98 QPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA-SQL 154
Query: 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078
S Q++RLTIA L P ++ MDEPTS +D + + + + ++ +V H P
Sbjct: 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGSITISGYLKKQE 948
V++ +S RPG L+G SG+GK+T L+ ++ + G I G +
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDG--QPLH 350
Query: 949 TFTRISG----------YCEQNDIHSPLVTVYESLLYSAWLRL-PPEVDSETRKMFIEEI 997
R + + N +P + V + + LR+ P + + R+ + +
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 998 MELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
ME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 409 MEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 44/217 (20%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGSITISGYLKKQETF 950
L VS G L+G +GAGK+TL+ +LAG I +G++T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 951 TRISGYCEQNDIHSPLVTVYESL-LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
R+S +P +T E++ L L L + E I+EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
LP V S+ + RL A+ P I+ +DE + DA R ++ ++ G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1070 TVVCTIHQPSIDIFESFDEAIPGVQKIKDGCNPATWM 1106
TV+ H PS IK C+ A +
Sbjct: 194 TVILVSHDPSS---------------IKRLCDRALVL 215
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-LKKQETFTRIS 954
VS R G A++G +G+GK+TL +LAG T G I I+ + L + R
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRSK 87
Query: 955 G----YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
+ + N +P + + + LRL +++ E R+ I E + +V L P +
Sbjct: 88 RIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 146 Y----PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 47/274 (17%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGH-----NMD 233
LK VS I S+T L+GP GK+T L L D + ++ G V +G ++
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E ++ + Q N + ++RE +++ R G + +L L R+++ D
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINT-GLLARLLGRDDKD--AEDEL 176
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++ ++ AA + + L D L G+SGGQ++R+ LA
Sbjct: 177 VERSLRQAALWDEVNDRLDDNAL-------------------GLSGGQQQRLCIARCLAV 217
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
+ MDE ++ LD T +I + I + V +Q A +SD
Sbjct: 218 DPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAAR----------ISD 267
Query: 409 GLIVYLGPRELV-LDFFESMGFKCPERKGVADFL 441
V+L ELV D + + F+ PE + V D++
Sbjct: 268 QTAVFLTGGELVEYDDTDKI-FENPESQRVEDYI 300
|
Length = 305 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 59/251 (23%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 235
HL + D++ + G + +LGP +GK+TLL +AG SG + NG +
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 236 EP-QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
P +R + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
+K A + + + +GL L G+ +SGGQ++RV ALA
Sbjct: 100 ---LKLNAEQRE----KVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRV----ALARC 143
Query: 353 -------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
L +DE + LD + +++ + Q + ++ + + + D ++
Sbjct: 144 LVREQPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVF 202
Query: 406 LSDGLIVYLGP 416
L +G I G
Sbjct: 203 LDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 47/201 (23%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
P R L ++ +RPG L+GP +GK+TL L D SGR+ +G +
Sbjct: 348 PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVD 403
Query: 232 MDEFEPQRVAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
+ + +P + A ++ D + +V E + + +
Sbjct: 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------------------R 438
Query: 290 PDP-DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
PD D +V A A E + L DT +G+ + +SGGQ++R+
Sbjct: 439 PDATDEEVEAAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIA 488
Query: 349 PAL-----ALFMDEISNGLDS 364
A+ L +DE ++ LD+
Sbjct: 489 RAILKDAPILLLDEATSALDA 509
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 47/202 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLL--LALAGKLDSSLKVSGRVTYNGHNM-----D 233
LK+++ I +T ++GP GK+T + L L ++ ++K++G + YNG N+ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E ++ + Q N + ++ + +A+ R G ++ +L + ++
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNK----KKLQEIVEKS------- 135
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K A + + L L +SGGQ++R+ ALA
Sbjct: 136 ----LKDVALWDEVKDRLHTQAL-------------------SLSGGQQQRLCIARALAT 172
Query: 353 ----LFMDEISNGLDSSTTFQI 370
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 48/176 (27%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG---------- 942
+L G+ G + AL+G +GAGK+TLM ++AG +G++ I G
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 943 ------YLKKQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFI 994
YL QE F P ++V E++L+ LP S +KM
Sbjct: 83 AHQLGIYLVPQEPLLF--------------PNLSVKENILF----GLPKRQASM-QKM-K 122
Query: 995 EEIMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
+ + L +L+ + L R+ + I L+ + I+ +DEPT+ L
Sbjct: 123 QLLAALGCQLDLDSSA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
S LS Q++R++IA L+ +I DEPT LD+ + VM + + G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1077 QPSI 1080
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----E 948
+L +S F G + ++G SGAGK+TL+ ++ + GSI I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 949 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
+I +Q + TV +++ Y L+ VD +E + +V LN
Sbjct: 75 LRRKIGMVFQQPHLFEG--TVKDNIEYGPMLKGEKNVD-------VEYYLSIVGLN---- 121
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET- 1067
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM 181
Query: 1068 GRTVVCTIH 1076
TV+ H
Sbjct: 182 NLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 38/165 (23%)
Query: 907 LTALMGVSGAGKTT-------LMDVLAGRKTGGYI--TGSITISGYLKKQETFTRISGYC 957
+TA++G SG GK+T +++++ KT G I +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVF 111
Query: 958 EQNDIHSPL-VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP-- 1014
++ + P ++Y+++ Y P++ K ++EI+E +SL G
Sbjct: 112 QKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAIW 154
Query: 1015 ---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG----YLKKQETFTRISGYCEQN 960
G TA++G +G GK+TL+ L+ T G + + G + +E RI G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRI-GLLAQN 89
Query: 961 DIHSPLVTVYESL---------LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
+TV E + L++ W + + ++ T+ M I L QS
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS-- 140
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 ----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 5e-05
Identities = 63/264 (23%), Positives = 97/264 (36%), Gaps = 91/264 (34%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--- 236
+LK +S I+ G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 237 --------PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
QRV H+ T+R+ L +
Sbjct: 412 LRQAISVVSQRV---------HLFSATLRDNLLLA------------------------- 437
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVL-----GLDICADTLVGDEMIRGISGGQKR 343
A++ VL L+ L GL + +G E R +SGG++R
Sbjct: 438 ----------APNASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSGGEQR 482
Query: 344 RVTTGPALALF-------MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396
R+ G A AL +DE + GLD+ T QI+ + + H N T ++ T
Sbjct: 483 RL--GIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI-------T 531
Query: 397 YDL-----FDDIILLSDGLIVYLG 415
+ L FD I ++ +G I+ G
Sbjct: 532 HRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 5e-05
Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 70/238 (29%)
Query: 150 EFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLL 209
++IY T R+ +++P +K+ ILKD+S PG+ +LG +GK+TLL
Sbjct: 4 QYIY---TMNRVS------KVVPPKKQ---ILKDISLSFFPGAKIGVLGLNGAGKSTLLR 51
Query: 210 ALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA------YISQH---DNHIGEMTVRETL 260
+AG +D EFE + A Y+ Q D E TVRE +
Sbjct: 52 IMAG-VD----------------KEFEGEARPAPGIKVGYLPQEPQLDP---EKTVRENV 91
Query: 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQE---ANVLTDYYLK 317
+GV L ++ A +PD D D E QE A D +
Sbjct: 92 E-----EGVAEVKAALDRFNEI-YAAYAEPDADFDALAAEQG-ELQEIIDAADAWDLDSQ 144
Query: 318 VLGLDICADTL---VGDEMIRGISGGQKRRVTTGPALA---------LFMDEISNGLD 363
L+I D L D + +SGG++RRV AL L +DE +N LD
Sbjct: 145 ---LEIAMDALRCPPWDAKVTKLSGGERRRV----ALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 59/231 (25%)
Query: 876 VDMPQEMKLQGVHEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 928
V++P+E++ + VH GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEELEEEVVHR------YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 929 KT---GGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR----- 980
G Y E R G QN Y LY LR
Sbjct: 124 LKPNLGRY-------EDPPSWDEVIKRFRGTELQN---------YFKKLYEGELRAVHKP 167
Query: 981 -----LPPEVDSETRKM--------FIEEIMELVELNPL--RQSLVGLPGVSGLSTEQRK 1025
+P V + ++ +E++E + L + R VS LS + +
Sbjct: 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQ 220
Query: 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
R+ IA L+ + + F DEP+S LD R R ++ E G+ V+ H
Sbjct: 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 906 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSITISG---YLKKQETFT--RISGYC 957
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL--------NPLRQS 1009
Q P +T+Y+++ + ++L V S+ +E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + ++
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1070 TVVCTIHQPS 1079
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 51/267 (19%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS------- 941
+ K VL N +S G + ++G SGAGK+ LM VL G +G I
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 942 GYLKKQETFTRISGYC------EQNDIHSPLVTVYESL-------------LYSA----- 977
GY+++ C E+ D + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 978 -WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1036
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1037 PSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDEAIPGVQK 1095
P + DEPT LD + A +V ++ V +G ++V T H P + I + D+AI
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAI----W 241
Query: 1096 IKDGC-----NPATWMLEVTARSQELA 1117
+++G P EV A E
Sbjct: 242 LENGEIKEEGTP----DEVVAVFMEGV 264
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 31/199 (15%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGY----LKKQ 947
L+ +S PG AL+G SG+GK+TL++++ G I ++ Y L++Q
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE------IMELV 1001
D+ T+ ++ Y + D IE + V
Sbjct: 408 VALV-------SQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFV 452
Query: 1002 ELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
+ PL + +G GV LS QR+RL IA L+ + I+ +DE TS LD + +V
Sbjct: 453 DKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA 511
Query: 1061 VKNTVETGRTVVCTIHQPS 1079
++ ++ GRT + H+ S
Sbjct: 512 LERLMQ-GRTTLVIAHRLS 529
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+LK++S ++ G LLG SGK+TLL L G L G +T +G + + E
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKA 72
Query: 239 RVAAYIS--QHDNHIGEMTVRETL 260
+++ IS ++ + T+R L
Sbjct: 73 -LSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHN-----M 232
++K V I + L+GP GK+TLL +L+ +V G V G N +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQG-VGSRFDMLTELDKRENEAGIKPD 291
D E +R + Q+ N +T+ + +A + G V S+ ELD+R A
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK----KELDERVEWA----- 129
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
+K AA + + L DY +SGGQ++R+ AL
Sbjct: 130 ------LKKAALWDEVKDRLNDY-------------------PSNLSGGQRQRLVIARAL 164
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP-ETYDLFDDIIL 405
A L MDE + +D T I + + L I L+ +P + + D +
Sbjct: 165 AMKPKILLMDEPTANIDPVGT----AKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAF 220
Query: 406 LSDGLIVYLGPRELVLD 422
L G ++ +GP V +
Sbjct: 221 LYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 70/285 (24%), Positives = 112/285 (39%), Gaps = 61/285 (21%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKK 946
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 947 QETFTRIS---GYCEQN-DIHSPLVTVYESLLYSAWL---RLPPE-----VDSETRKMFI 994
+E I G QN D TV + + + L ++PP+ +D +K+ +
Sbjct: 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGM 132
Query: 995 EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
E+ ++ N LS Q++R+ IA L NP II DE TS LD +
Sbjct: 133 EDYLDKEPQN--------------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 1055 AIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI--------PGVQKIKDGCNPATWM 1106
+ + + + +T + + I I DEAI + I G P
Sbjct: 179 REIKKIMVDLRKTRKKTL-------ISITHDMDEAILADKVIVFSEGKLIAQG-KP---- 226
Query: 1107 LEVTARSQELALG-VDFHNIYKLSDLYR------RNKALIEELSK 1144
E+ + L +D IYKLS + + LIE++ K
Sbjct: 227 KEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYNEEELIEQICK 271
|
Length = 271 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 908 TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFT-------RISGYCEQ 959
TA+ G SGAGKT+L++ ++G G I ++G L E RI GY Q
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRI-GYVFQ 83
Query: 960 NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019
+ P V +L Y + F ++I+ L+ + PL L P L
Sbjct: 84 DARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--GSL 129
Query: 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
S +++R+ I L+ P ++ MDEP + LD
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1044 EPTSGLDARAAAIVMRTVKN 1063
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 35/161 (21%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR-------ISG 955
G A++G SGAGK+TL++++AG T +GS+T++G + T +S
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNG-----QDHTTTPPSRRPVSM 75
Query: 956 YCEQNDIHSPLVTVYE--SLLYSAWLRLPPE----VDSETRKMFIEEIMELVELNPLRQS 1009
++N++ S L TV + L + L+L + + R+M IE+++ R
Sbjct: 76 LFQENNLFSHL-TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-- 125
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
LPG LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 126 ---LPG--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 85/269 (31%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
LK ++ I+ G +T +LG +GK+TL L G L S SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKA 300
Y + G M +RE+ VG F DPD +F
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 301 AATEGQEANVLTDYYLKVLGLDICADTL---VGDEMIR-GI-----------SGGQKRRV 345
A+V D + L + D + V + + R GI S GQK+RV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 346 TTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL- 399
L L +DE + GLD +I+ + + L T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 400 -----FDDIILLSDGLIVYLG-PRELVLD 422
D++ ++ +G ++ G P+E+ +
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 49/215 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGH----NMDE 234
LK ++ I +T L+GP GK+TLL L L +K++G++T +G N+D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 235 FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
+ + + Q N M++ E +A+ R QG+ + LD+ +
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDK----KVLDEVVERS-------- 125
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL- 353
++ AA D D L G+SGGQ++R+ +A+
Sbjct: 126 ---LRGAAL-----------------WDEVKDRL--KSHAFGLSGGQQQRLCIARTIAME 163
Query: 354 ----FMDEISNGLDSSTTFQI---VNSIRQNIHIL 381
MDE ++ LD T +I + +++N I+
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198
|
Length = 249 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 1009 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1063 NTVETGRTVVCTIH 1076
N + G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
LS Q++RL IA + +P +I MDEP S LD A + + ++ E TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-05
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 33/206 (16%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK--KQ 947
D +L GVS +TA++G SG GK+T + L + + + G ++ Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 948 ETFTR---ISGYCEQNDIHSPL-----VTVYESLLYSAWL---RLPPEVDSETRKMFIEE 996
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 997 IMELVEL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 1052 RAAAIVMRTVKN-TVETGRTVVCTIH 1076
A+ V +++ + + T+V H
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 62/259 (23%), Positives = 99/259 (38%), Gaps = 73/259 (28%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L+DVS I G L GP +GK+TLL + G+ + G++ NGH++ R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDL-----SR 68
Query: 240 VAAY-ISQHDNHIG----------EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
+ I IG + TV E +A R G R E+ +R +E
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV-- 121
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
L ++GL A L +SGG+++RV
Sbjct: 122 ---------------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIA 149
Query: 349 PALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD- 402
A+ L DE + LD +++I+ + + I+ L GT V+ A +L +
Sbjct: 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRL-GTTVLM----ATHDLELVNRM 203
Query: 403 ---IILLSDGLIVYLGPRE 418
++ L DG +V R
Sbjct: 204 RHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIH 963
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 964 SPLVTVYESLLYSAWL--RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GSITISGYLKK 946
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL--- 1003
R G Q P +++E++ Y LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKPNPFP-KSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDE 138
Query: 1004 --NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 139 VKDRLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-05
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 49/198 (24%)
Query: 883 KLQGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSI 938
KLQ V + K ++ G+ G L+G SG GK+TL+ ++AG + IT G I
Sbjct: 5 KLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEI 61
Query: 939 TISGYLKKQETFTRISGYCE----------QNDIHSPLVTVYESLLYSAWLRLPPEVDSE 988
I G R+ E QN P ++V E++ Y +R P+ + E
Sbjct: 62 WIGG---------RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIE 112
Query: 989 TRKMFIEEIMELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
R + E ++EL PL R+ LS QR+R+ + +V P++ D
Sbjct: 113 ER---VAEAARILELEPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFD 159
Query: 1044 EPTSGLDA--RAAAIVMR 1059
EP S LDA R MR
Sbjct: 160 EPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 48/204 (23%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
L+IL V +++ G L+G SGK+TLL LAG D S SG V+ G + + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKREN---EAGIKPDPDI 294
+ A ++H + F V F ++ L+ EN A ++ +
Sbjct: 80 EARAKLRAKH------------VGF------VFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV------TTG 348
A A L+ LGL L D + +SGG+++RV
Sbjct: 122 QSRNGAKA------------LLEQLGL---GKRL--DHLPAQLSGGEQQRVALARAFNGR 164
Query: 349 PALALFMDEISNGLDSSTTFQIVN 372
P + LF DE + LD T +I +
Sbjct: 165 PDV-LFADEPTGNLDRQTGDKIAD 187
|
Length = 228 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-04
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
++++ S ++PG L+G SGK+T+ +AG SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 240 VAAYISQHDNHIG--EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+A ++ D I E TVR+ L +D PD D+
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTL----------WD------------PTIPDADL--- 585
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG---ISGGQKRRVTTGPALA-- 352
++A ++A + + G D E+ G +SGGQ++R+ AL
Sbjct: 586 VRAC----KDAAIHDVITSRPGGYD--------AELAEGGANLSGGQRQRLEIARALVRN 633
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQ 376
L +DE ++ LD T I +++R+
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRR 660
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
GLS Q++RL IA L +P +I MDEP S LD A + + ++ E VV T
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT 256
|
Length = 305 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 55/255 (21%), Positives = 105/255 (41%), Gaps = 58/255 (22%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFE 236
ILKD+S G++ ++GP +GK+TL+ + +D + G + +G +D +
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
E NV +YYL ++GL+ + D ++ +SGG+ +RV+ LA
Sbjct: 106 ----------EKNVDVEYYLSIVGLN--KEYATRD--VKNLSGGEAQRVSIARTLANNPE 151
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L +DE ++ LD ++T +I+ + + VI + + + D L+ G++
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 412 VYLGPRELVLDFFES 426
V DFF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 40/215 (18%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L +S G ++G +GAGK+TL+ ++AG + T +G + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 953 ISGYCEQNDIHSPLVTVYESL-LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
++ E P +T E++ L L L + E + ++EI+E EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRK---EIDEK-VDEIIEFAEL----GDFI 141
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1071
P V S+ RL +V P I+ +DE + DA + + VE +T+
Sbjct: 142 DQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 1072 VCTIHQPSIDIFESFDEAIPGVQKIKDGCNPATWM 1106
V H IK C+ A W+
Sbjct: 201 VLVSHDL---------------GAIKQYCDRAIWL 220
|
Length = 249 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 31/172 (18%)
Query: 899 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSITISGYLKKQETFTRISG 955
G G V+ + G +G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 956 YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015
TV + LL S ++ S + EI++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
LS + +R+ IA L + + +DEP++ LD V + ++ E
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502
|
Length = 590 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQ---ETF 950
L+G+ RPG L G +GAGK+TLM +L+G G G I SG LK +T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 951 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQS 1009
Q P ++V E++ + LP + + + ++ ++L+ +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
V Q++ + IA L ++ +DEP+S L + I++ +++
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 40/185 (21%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YL 944
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 945 KKQE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLR---------LPPEVDSETRKMF 993
KK + R G Q P ++YE+++Y LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFP-KSIYENVVYG--LRLQGINNRRVLDEAVERSLRGAA 153
Query: 994 I-EEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ +E+ + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 154 LWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 1053 AAAIV 1057
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY----LKKQET 949
+L V +PG + G +G+GK++L LA + G I I G L
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLHTL 93
Query: 950 FTRISGYCEQNDIHSPLVTVYESLLYSAWLR--LPPEVDSETRKMFIEEIMELVELNPLR 1007
+R+S + + + +L+S +R L PE +++ E +E+ +L +
Sbjct: 94 RSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLKNMV 139
Query: 1008 QSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
+SL G G+ + TE QR+ +A V SI+ MDE T+ +D I+ +
Sbjct: 140 KSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1060 TVKNTVETGRTVVCTIHQPS 1079
V T RTVV H+ S
Sbjct: 198 VVM-TAFADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 49/194 (25%)
Query: 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFEPQRVAAYIS 245
+RPG LLG +GKTT L G D+++ SG T G ++ + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEG 305
Q D +T RE L AR +GV + E++K
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAE-----EIEK------------------------ 2049
Query: 306 QEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISN 360
+ ++ ++ LGL + AD L G SGG KR+++T AL + +DE +
Sbjct: 2050 -----VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 361 GLDSSTTFQIVNSI 374
G+D + N+I
Sbjct: 2100 GMDPQARRMLWNTI 2113
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 57/195 (29%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
++ +S + G LLGP +GK+T+ + G +G++T + P R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 240 VAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ Q DN E TVRE L R F M T RE EA I
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGR------YFGMST----REIEAVIPS--- 155
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L+ L+ AD V D +SGG KRR+T AL
Sbjct: 156 ---------------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 353 ----LFMDEISNGLD 363
L +DE + GLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 46/247 (18%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHN---MDE 234
+L V+ I ++T L+GP SGK+TLL +L +VSG V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 235 FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
E +R + Q N I +++ E +A +G + + L + K+E + +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVA-------LGLKLNRLVK-SKKELQERV------ 123
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
+ A + Q + + D LD A L SGGQ++R+ ALA
Sbjct: 124 ----RWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 410 LIVYLGP 416
IV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L D++ I +T L+GP GK+TLL L +++G + YNG N+ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 239 RVA-----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
VA + Q N + ++ E +A+ R G ++ + T ++K
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKS----------- 129
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K AA + + L D L +SGGQ++R+ LA
Sbjct: 130 ----LKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIARTLAV 166
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
+ MDE + LD T +I + I
Sbjct: 167 NPEVILMDEPCSALDPIATAKIEDLIED 194
|
Length = 253 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 149 IEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLL 208
+F + LK L L + LKD+S I G ++G +GK+TLL
Sbjct: 11 KKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLL 70
Query: 209 LALAG--KLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266
+AG K SG+V G +VA I E+T RE +
Sbjct: 71 KLIAGIYKPT-----SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRGLI 116
Query: 267 QGVGSRFDMLTELDKRENE 285
G+ + E+D++ +E
Sbjct: 117 LGLTRK-----EIDEKVDE 130
|
Length = 249 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 907 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGSITISGYLKKQETFTRISGYC 957
+TA +G SG GK+T + D++ G G Y G+ T S + E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 958 EQNDIHSPL-VTVYESLLYSAWLRLPPEVDSETRKMFIEEIME-----LVELNPLRQSLV 1011
++ +P +++++++ Y P + + +E+I+E + ++ L
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 --KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 54/185 (29%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSITISGYLKKQETFT 951
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 952 RISGYCEQNDIHSPLVTVYE--SLLYSAWLRLPP-------------EVDSETRKMFIEE 996
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 997 IMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045
I+E L+Q+ + L LS Q++RL IA + P I+ MDEP
Sbjct: 139 IVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEP 190
Query: 1046 TSGLD 1050
S LD
Sbjct: 191 ASALD 195
|
Length = 267 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
+L+G+S P ++G +GAGK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 954 SGYCEQNDIHSPLVTVYES-LLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLRQSLV 1011
D+ L + +S +L+S +R + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 1012 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT++
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + +K
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1066 ETGRTVVCTIHQPSIDIFES 1085
E G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKFHD 155
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 907 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGSITISGYLKKQETFTRISGYC 957
+TAL+G SG GK+T + D++ G + G Y+ G + E ++ G
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV-GMV 89
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-----NPLRQSLVG 1012
Q P ++++++ Y LR+ E D + + +EE ++ L + L +S +G
Sbjct: 90 FQKPNPFP-KSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG 146
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
L G Q++RL IA + +P +I MDEP S LD + + + + ++ T+V
Sbjct: 147 LSG------GQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTTKIEDLIHKLKEDYTIV 199
Query: 1073 CTIH 1076
H
Sbjct: 200 IVTH 203
|
Length = 250 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L ++ + G ++G +G+GK+TL L G R G + S +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 953 ISGYCEQNDIHSPLV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
+ G QN + V TV E L + L LPP E RK + E + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAE-IGLEKYRHR 132
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
LS Q + + +A L P + DE TS LD + V+ +K E G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1070 TVVCTIH 1076
T+V H
Sbjct: 188 TIVYITH 194
|
Length = 274 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 885 QGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944
QGV + VS + G A++G +GAGKTTL+++L ++ G I I G
Sbjct: 349 QGVFD--------VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGI- 397
Query: 945 KKQETFTRISGYCEQNDIHSPLVTVYESL-LYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
T TR + + TV++ L++ +R + E EE+ E +
Sbjct: 398 -DINTVTR-------ESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKA 447
Query: 1004 NPLRQ----------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD
Sbjct: 448 AAAHDFILKRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506
Query: 1054 AAIVMRTVKNTVETGRTVVCTIHQPS 1079
A V + + + RT H+ S
Sbjct: 507 EARVKNAI-DALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
+L G++ + G + A+MG +G+GK+TL V+AG + G I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 954 S------GYCEQNDIHSPLVT-------VYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
+ + Q I P V+ Y S L PE+D I E ++L
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKL 136
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
V ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 137 VGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 1061 VKNTVETGRTVVCTIH 1076
+ + + +++ H
Sbjct: 194 INKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 907 LTALMGVSGAGKTTLMDVL--------AGRKTGGYITGSITISGYLKKQETFTRISGYCE 958
+TA++G SG GK+T + + + TG + I G + + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 959 QNDIHSPLVTVYESLLYSAWL-------RLPPEVDSETRKMFI-EEIMELVELNPLRQSL 1010
Q P ++++++ Y L +L V+ RK + +E+ + ++ N L
Sbjct: 127 QKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 48/223 (21%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG ++ +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLSK 71
Query: 235 FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
A ++ L F + +L + EN
Sbjct: 72 LSSNERAKLRNKK------------LGF------IYQFHHLLPDFTALEN---------- 103
Query: 295 DVFMKA--AATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
V M +EA L+ +GL+ + + +SGG+++RV AL
Sbjct: 104 -VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALV 157
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL 390
+ DE + LD++ I + + + LN S L
Sbjct: 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLE----LNRELNTSFL 196
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 59/250 (23%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 235
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N +
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 236 EP-QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
P QR + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
+K A + ++ + +G+ D L +SGGQ++RV ALA
Sbjct: 99 ---LKLNAEQQEKVVDAA----QQVGIADYLDRLPEQ-----LSGGQRQRV----ALARC 142
Query: 353 -------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
L +DE + LD +++ ++Q T ++ + + + I +
Sbjct: 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAV 201
Query: 406 LSDGLIVYLG 415
+S G I +
Sbjct: 202 VSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T L +SG +R G + L+GP +GK+TLL +AG SG + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 239 RVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFD 274
+A AY+SQ M V L + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLN 107
|
Length = 248 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 60/287 (20%), Positives = 112/287 (39%), Gaps = 20/287 (6%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+LK++S I G + +LG +GK+ L+ L G +D SGR+ Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI---RGISGGQKRRVTTGPALA-- 352
++A G E + ++ + + + R +SGG+K+RV LA
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEM-----VQLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY-DLFDDIILLSD 408
DE + LD T + N++ + + + V++ PE DL D I L +
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLEN 244
Query: 409 GLIVYLG-PRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYW 454
G I G P E+V F E G E++ + + + ++ + +
Sbjct: 245 GEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKVRNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 10/226 (4%)
Query: 512 LLKANISREFLLMKRNSFVY-IFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASF 570
L+ + + L+ + I L + + L R + D +I
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 571 FAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFY---PAWSYALPAWIVKIPISFLEVAAW 627
++M++ + + + L + + ++ L
Sbjct: 95 --ILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 628 VFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSF-GSFALLML 686
+ + +++G LLLL + AL + ++ + S G+ +L L
Sbjct: 153 LLVIAFLLGVPFLGS-LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPL 211
Query: 687 FALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKF 732
L G + + W + +P+ YA +A+ WR
Sbjct: 212 GFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGWRND 255
|
Length = 286 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 908 TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHS 964
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 965 PLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP------- 1014
P + ++ E+LL A + +EI E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 1015 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249
PG + L++GPP SGKTTL ALA +L + + + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 250 HIGEMTVRETLAF 262
GE+ +R LA
Sbjct: 61 GSGELRLRLALAL 73
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 33/231 (14%)
Query: 859 VLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 918
VL T EVV V+ L + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 919 TTLMDVLAG-RKTGGYITGSITISGYLKKQETFTRIS-------GYCEQNDIHSPLV--- 967
+ L++ ++G RK +G I ++G K Y ++ LV
Sbjct: 298 SELVEAISGLRKP---ASGRILLNG--KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL 352
Query: 968 TVYESLLYSAWLRLPPEVDSETRKMFI--EEIM----ELVELNPLRQSLVGLPGVSGLST 1021
++ E+L+ P R F+ I EL+E +R P LS
Sbjct: 353 SLAENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSG 406
Query: 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
+++L +A EL P ++ +PT GLD A + + + G+ V+
Sbjct: 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 307 EANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNG 361
EA L +YL +GLD D+ + + G+SGGQKRRV LA L DE + G
Sbjct: 151 EAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG 206
Query: 362 LDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG-PRELV 420
LD +++ I N V + ++ D++I++ G I+ G P E+
Sbjct: 207 LDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
Query: 421 LD--FFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHV 478
D S + P V + ++ + + + K+ R T+++ +A F
Sbjct: 265 TDQHIINSTSIQVPR---VIQVINDLIKKDPKYKKLYQKQPR----TIEQLADAINEFIK 317
Query: 479 G 479
G
Sbjct: 318 G 318
|
Length = 320 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
Query: 235 FEPQRVAA-------YISQHDNHIGEMTVRETLAF------SARCQGVGSRFDMLTE--L 279
A +I Q + + + T E +A + +ML L
Sbjct: 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 280 DKREN 284
+ R N
Sbjct: 136 EHRAN 140
|
Length = 233 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 153 YFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA 212
Y + LKDVS + G L+G +GK+TLL LA
Sbjct: 10 YPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69
Query: 213 GKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 272
G SG VT G RV++ + E+T RE + + R G+ SR
Sbjct: 70 GIYPPD---SGTVTVRG---------RVSSLLGLGGGFNPELTGRENIYLNGRLLGL-SR 116
Query: 273 FDMLTELDKRENE 285
E+D++ +E
Sbjct: 117 ----KEIDEKIDE 125
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 62/252 (24%)
Query: 848 EIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVL 907
EI +L P EPH +V+ + + V ++ VS + R G +
Sbjct: 241 EITSL-------YPHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEI 288
Query: 908 TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLV 967
+ G+ GAG+T L+ L G G + G++ I+G + DI +P
Sbjct: 289 LGVAGLVGAGRTELVQALFGAYPGKF-EGNVFING---------------KPVDIRNPAQ 332
Query: 968 TVYESLLYSAWLRLPPE---------------------VDSETRKMFIEEIMEL------ 1000
+ A + + PE + S KM I+ EL
Sbjct: 333 AI------RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSA 386
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
++ ++ + LP + LS +++ +A L+ NP ++ +DEPT G+D A + +
Sbjct: 387 IQRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445
Query: 1061 VKNTVETGRTVV 1072
+ + G ++
Sbjct: 446 INQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 65/259 (25%), Positives = 88/259 (33%), Gaps = 87/259 (33%)
Query: 190 PGSMTLLLGPPSSGKTTLL---LALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQ 246
G + LLGP +GKTTLL L L ++KV+G G + PQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 247 H----DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAA 302
H D I +V T+ + R G P + F
Sbjct: 58 HEFAWDFPI---SVAHTV------------------MSGRTGHIGWLRRPCVADFAAVRD 96
Query: 303 TEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDE 357
L+ +GL AD VG+ +SGGQ++RV ALA L +DE
Sbjct: 97 A------------LRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDE 139
Query: 358 ISNGLDSSTTFQIV----------NSIRQNIH-------------ILNGTAVIS-----L 389
GLD T + +I H +LNG + L
Sbjct: 140 PFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
Query: 390 LQPAP--ETYDLFDDIILL 406
PAP T+ + D LL
Sbjct: 200 QDPAPWMTTFGVSDSSPLL 218
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 52/255 (20%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHN-----MD 233
LK + +T L+GP GK+T L L L + ++G V+ G N D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ ++ + Q N ++ E + + R GV DK
Sbjct: 81 VVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVK---------DKA----------- 119
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
V +A T ++A + + + E +SGGQ++RV LA
Sbjct: 120 --VLDEAVETSLKQAAIWDEVKDHL------------HESALSLSGGQQQRVCIARVLAV 165
Query: 353 ----LFMDEISNGLDSSTTFQIVN---SIRQNIHILNGTAVISLLQPAPETYDLF--DDI 403
+ +DE ++ LD ++ QI N +R I+ T + + F ++
Sbjct: 166 KPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
Query: 404 ILLSDGLIVYLGPRE 418
I +D ++L P+E
Sbjct: 226 IEFADTKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 28/211 (13%)
Query: 885 QGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG-- 942
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 6 VTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQ 63
Query: 943 ----------YLKKQETFTRIS----GYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDS 987
+ E R G Q+ P TV +++ + L L ++
Sbjct: 64 LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEA 123
Query: 988 ETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047
E R M EL+++ L +P + LS Q++R+ IA L P ++ DE TS
Sbjct: 124 EKRAM------ELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1048 GLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1077
LD V+ ++ E T++ H+
Sbjct: 176 ALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 64/288 (22%), Positives = 105/288 (36%), Gaps = 87/288 (30%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFEP 237
+ DVS +R G + +++G SGK+TLL + ++ + SG+V +G M E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 238 QRV----AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ + + + Q + TV E +AF QGV +RE
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRA--------ERE---------- 138
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
A E E L + + +SGG ++RV ALA
Sbjct: 139 ------ERAAEALELVGLEGW---------------EHKYPDELSGGMQQRVGLARALAV 177
Query: 353 ----LFMDEISNGLD-------SSTTFQIVNSIRQNI----HILNGTAVISLLQPAPETY 397
L MDE + LD ++ +++ I H L+ E
Sbjct: 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD------------EAL 225
Query: 398 DLFDDIILLSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFLQEV 444
L D I ++ DG +V +G P E++ + P V +F + V
Sbjct: 226 RLGDRIAIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 59/264 (22%), Positives = 112/264 (42%), Gaps = 50/264 (18%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T+ ++++ I G T ++GP GK+TLL L+ + G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 239 RVAAYI---SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
VA I +Q+ G++TV+E +A +G + T K + E
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA-----RGRYPHQPLFTRWRKEDEE---------- 122
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
A T+ +A +T + D+ + +SGGQ++R LA
Sbjct: 123 -----AVTKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
+ +DE + LD S ++ + + ++ G + ++L + +I L +G
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 411 IVYLG-PRELVL-DFFESM-GFKC 431
IV G P+E+V + E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 54/219 (24%), Positives = 84/219 (38%), Gaps = 51/219 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHN-----MD 233
L D+S +T L+GP GK+T L L L +V G + +G N +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E +R + Q N + ++ E +A+ R GV + L +R +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDK----AYLAERVERS------- 129
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++ AA + + L + L G+SGGQ++R+ ALA
Sbjct: 130 ----LRHAALWDEVKDRLHESAL-------------------GLSGGQQQRLCIARALAV 166
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
L MDE ++ LD T I + IH L I
Sbjct: 167 EPEVLLMDEPASALDPIAT----QKIEELIHELKARYTI 201
|
Length = 253 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 53/217 (24%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH----NMDEFE 236
L D+S + PG + +L+GP +GKTTL+ + GK G V ++G + E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHR 77
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLT---ELDKREN-EAGIKPDP 292
I++ G+G +F T L REN E + D
Sbjct: 78 -------IARA--------------------GIGRKFQKPTVFENLTVRENLELALNRDK 110
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
+ + A + + D L +GL D L +S GQK+ + G LA
Sbjct: 111 SVFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLA 163
Query: 353 -----LFMDEISNGL-DSST--TFQIVNSIRQNIHIL 381
L +DE G+ D+ T T +++ S+ IL
Sbjct: 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200
|
Length = 249 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 62/243 (25%), Positives = 89/243 (36%), Gaps = 67/243 (27%)
Query: 194 TLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-----DEFEP--QRVAAYISQ 246
T L GP SGKT+L+ +AG GR+ NG + F P +R Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQ 306
TVR L + + + ++FD L L GI+
Sbjct: 84 DARLFPHYTVRGNLRY-GMWKSMRAQFDQLVAL------LGIEH---------------- 120
Query: 307 EANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNG 361
L D Y L SGG+K+RV G AL L MDE
Sbjct: 121 ----LLDRYPGTL------------------SGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 362 LDSSTTFQI---VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRE 418
LD +I + +R I+I ++ + E L D +++L +G + GP E
Sbjct: 159 LDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 419 LVL 421
V
Sbjct: 215 EVW 217
|
Length = 352 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 58/261 (22%)
Query: 193 MTLLLGPPSSGKTTLLLALAGKLDS--SLKVSGRVTYNGHN-----MDEFEPQRVAAYIS 245
+T L+GP GK+T L L D ++K++G + + G N MD E ++ +
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEG 305
Q +V + +A+ + GV + +D+R E+ +K AA
Sbjct: 92 QQPTPF-PFSVYDNVAYGLKIAGVKDK----ELIDQRVEES-----------LKQAAIWK 135
Query: 306 QEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL-----FMDEISN 360
+ + L D + SGGQ++R+ ALA+ +DE ++
Sbjct: 136 ETKDNL-------------------DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176
Query: 361 GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELV 420
LD ++ +I ++ + H V LQ A + D L +G ++ GP E +
Sbjct: 177 ALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIEAGPTEEM 233
Query: 421 LDFFESMGFKCPERKGVADFL 441
F P+++ +D+L
Sbjct: 234 --------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 43/229 (18%)
Query: 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTRISGY 956
G G + ++G +G GKTT + +LAG + G + +S K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEED-LKVS--YKPQYISPDYDG- 416
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
TV + L + S F EI++ + L L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTI 1075
LS + +R+ IA L + +DEP++ LD IV + ++ +E +T +
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 1076 HQPSI-----DIFESFDEAIPGV-------QKIKDGCNPATWMLEVTAR 1112
H + D F E PG +++G N L VT R
Sbjct: 514 HDIYMIDYVSDRLIVF-EGEPGKHGHASPPMSMREGMNRFLKNLGVTFR 561
|
Length = 591 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 47/209 (22%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNG-----HNM 232
ILK+V+ I S+T L+GP GK+T + L L + G + +G +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
D E ++ + Q N + ++ + +A+ R G D + E +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDE-DFIEERVEES--------- 126
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
+KAAA D D L D+ G+SGGQ++R+ +A
Sbjct: 127 -----LKAAAL-----------------WDEVKDKL--DKSALGLSGGQQQRLCIARTIA 162
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQ 376
+ MDE + LD +T +I + I +
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLIHK 191
|
Length = 250 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 910 LMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---------LKKQETFTRISGYCEQN 960
L+G SGAGK++L+ VL + +G++ I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 961 DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG-- 1018
P +TV ++L+ + P V ++ + +L L LR L +
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKL--LERLR-----LKPYADRF 138
Query: 1019 ---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ ETG T V
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198
Query: 1076 HQ 1077
H+
Sbjct: 199 HE 200
|
Length = 242 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 74/276 (26%)
Query: 146 TNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKT 205
+NIIE K L Q T L DVS ++ G ++G SGK+
Sbjct: 2 SNIIEV-------KNLTFKYKEDQEKYT-------LNDVSFHVKQGEWLSIIGHNGSGKS 47
Query: 206 TLLLALAGKLDSSLKVSGRVTYNGHNMDE---FEPQRVAAYISQH-DNHIGEMTVRETLA 261
T + + G L++ SG++ +G + E ++ + + Q+ DN TV + +A
Sbjct: 48 TTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVA 104
Query: 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321
F +G+ E+ +R NEA L+++G+
Sbjct: 105 FGLENKGIP-----HEEMKERVNEA-----------------------------LELVGM 130
Query: 322 DICADTLVGDEMIRGISGGQKRRVTTGPALAL-----FMDEISNGLDSSTTFQIVNSIRQ 376
+ E R +SGGQK+RV A+A+ +DE ++ LD +++ +I+
Sbjct: 131 QDFKER----EPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIK- 184
Query: 377 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
I VIS+ T+DL D + LSD ++V
Sbjct: 185 GIRDDYQMTVISI------THDL--DEVALSDRVLV 212
|
Length = 279 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 912 GVSGAGKTTLMDVLAGRKTGGYIT-GSITISG-YLKKQETFTRISGYCEQNDIHSPLVTV 969
G SG GK+TL+ ++AG + IT G + I + R G Q+ P ++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92
Query: 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL--RQSLVGLPGVSGLSTEQRKRL 1027
E++ S L+L E + ++ E+++L L R+ LS QR+R+
Sbjct: 93 AENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQRV 142
Query: 1028 TIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 64/257 (24%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMDEFE 236
++ VS ++ G + LLGP +GKTT + G K D SG++ +G ++ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLP 68
Query: 237 PQRVA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+ A Y+ Q + ++TV E + + L K+E E
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLE----------IRGLSKKEREE------ 112
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
+ L+ + + +SGG++RRV ALA
Sbjct: 113 ------------------KLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALA 149
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDII 404
L +DE G+D V I++ I IL I +L ET + D
Sbjct: 150 TNPKFLLLDEPFAGVDPIA----VQDIQKIIKILKDRG-IGVLITDHNVRETLSITDRAY 204
Query: 405 LLSDGLIVYLG-PRELV 420
++ +G ++ G P E+
Sbjct: 205 IIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS--SLKVSGRVTY-----NGHNMD 233
+K + +T L+GP SGK+T L +L D+ +V+G++ Y N ++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+E ++ + Q N + ++ E + F+ GV + LD+ +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDK----KVLDEIVETS------- 143
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+K AA Q V D L A TL SGGQ++R+ A+A
Sbjct: 144 ----LKQAALWDQ---VKDD-------LHKSALTL---------SGGQQQRLCIARAIAV 180
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
L MDE ++ LD +T Q+ ++ +
Sbjct: 181 KPDILLMDEPASALDPISTMQLEETMFE 208
|
Length = 267 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY-LKKQETFTRISGY 956
VS G + AL+G SG GK+TL+ +LAG + G I + G L + R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINM 95
Query: 957 CEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016
Q+ P +TV +++ + P+ + +R + E++ LV + +
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKR-----KP 147
Query: 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTI 1075
LS QR+R+ +A L P ++ +DEP LD + + V + +E G T V
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207
Query: 1076 H 1076
H
Sbjct: 208 H 208
|
Length = 377 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN---MDEFEP 237
L D+S + PG + +++GP +GKTT++ + GK G V + G + + E +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQ- 73
Query: 238 QRVAAYISQHDNHIG----------EMTVRETLAFSAR 265
I++ IG +TV E L +
Sbjct: 74 ------IARAG--IGRKFQKPTVFENLTVFENLELALP 103
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 54/224 (24%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946
V K +L +S +F PG ++G++GAGK+TL+ ++AG +G +
Sbjct: 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARP 64
Query: 947 QETFTRISGYCEQNDIHSPLVTVYE-------------------SLLYSAWLRLPPEVDS 987
GY Q P TV E S ++ E D+
Sbjct: 65 APGIKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA-------EPDA 115
Query: 988 ETRKMF-----IEEIMELVELNPLRQSL------VGLPG----VSGLSTEQRKRLTIAVE 1032
+ + ++EI++ + L + L + P V+ LS +R+R+ +
Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRL 175
Query: 1033 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
L++ P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-04
Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 48/211 (22%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
IL D++ I G M ++G SGK+TLL + G L+ SG+V NG
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETPP 64
Query: 235 FEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
++ + + RE L + + F ++ EN +
Sbjct: 65 LNSKKASKFR------------REKLGY------LFQNFALIENETVEEN---------L 97
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
D+ +K +E L+ +GL++ I +SGG+++RV ALA
Sbjct: 98 DLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----KIYELSGGEQQRV----ALARA 148
Query: 353 -------LFMDEISNGLDSSTTFQIVNSIRQ 376
+ DE + LD ++++ + +
Sbjct: 149 ILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229
+L++VS I PG ++GP SGK+TL + G L SGRV +G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDG 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 9e-04
Identities = 63/254 (24%), Positives = 98/254 (38%), Gaps = 75/254 (29%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L VS +RPG + LLG +GK+TL+ L+G SG + +G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG---KPVAFSSP 77
Query: 241 A-------AYISQHDNHIGEMTVRETLAFS---ARCQGVGSRFDMLTELDKRENEAGIKP 290
A + Q + + ++V E + R G+ +D++
Sbjct: 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGL---------IDRKA------- 121
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPA 350
M+ A E L LGLDI DTLVGD +S Q++ V A
Sbjct: 122 -------MRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMVEIARA 159
Query: 351 LA-----LFMDEISNGLDSSTT---FQIVNSIRQNIHILNGTAV--IS--LLQPAPETYD 398
L+ L +DE + L T F ++ ++ G A+ IS L E ++
Sbjct: 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVFE 210
Query: 399 LFDDIILLSDGLIV 412
+ D I +L DG +V
Sbjct: 211 IADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISG---YCEQND 961
G LT ++G G GK++L+ + G + G + S + + +F Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84
Query: 962 IHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIE--EIMELVELNPL-RQSLVGLPG 1015
P + TV E++ + + + + K + + ++L P Q+ +G G
Sbjct: 85 AQKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VKNTVETGRTVVC 1073
++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ +K + RT+V
Sbjct: 139 IN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197
Query: 1074 TIHQ 1077
H+
Sbjct: 198 VTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391
+SGG+++RV ALA L +DE ++ LD + +++ +R+ T V+ L
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-- 155
Query: 392 PAPETYDL------FDDIILLSDGLIVYLG 415
+DL D +ILL DG IV G
Sbjct: 156 -----HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 0.001
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 337 ISGGQKRRVTTGPALA---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
+SGGQ++R+ A+A L +DE ++ LD T I+ ++R + G VI
Sbjct: 97 LSGGQRQRI----AIARALLRDPPILILDEATSALDPETEALILEALRA---LAKGKTVI 149
Query: 388 SLLQPAPETYDLFDDIILLSDG 409
++ T D II+L DG
Sbjct: 150 -VIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 163 GSLNSLQILPTRKKHL-TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV 221
G + SL+ L RK LK +S I G + +GP +GKTT L L+G L +
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--- 74
Query: 222 SGRVTYNG----HNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGV-----GSR 272
SG V G +F +R+ Q ++ V ++ A + R
Sbjct: 75 SGEVRVAGLVPWKRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKR 133
Query: 273 FDMLTEL 279
D L+EL
Sbjct: 134 LDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 55/234 (23%)
Query: 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDN 249
G +T ++GP SGK+TLL +AG SGRV NG ++ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEAN 309
+TV + + G+ LT D R+ + K E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLK-LTAED-RQAIEVALARVGLAGLEKRLPGE----- 128
Query: 310 VLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDS 364
+SGG+++RV L L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 365 S---TTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415
+ +V + V+ + + L ++ L +G I G
Sbjct: 162 ALRAEMLDLVLDLHAE----TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 48/249 (19%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV--SGRVTYNGHNMDEFEP 237
+L +++ I+PG ++GP SGK+TL KL L G+V +G ++ +P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ + + ++E + FS S R+N A P +
Sbjct: 527 AWLRRQMG--------VVLQENVLFS------RS---------IRDNIALCNPGAPFEHV 563
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
+ AA G + L +T VG E +SGGQ++R+ AL
Sbjct: 564 IHAAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L DE ++ LD + I+ ++R+ I G VI + T D II+L G I
Sbjct: 615 LIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIA 670
Query: 413 YLGPRELVL 421
G E +L
Sbjct: 671 ESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 55/253 (21%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP--- 237
+ D I G + +++G SGK+T + L ++ + +G++ +G N+ + P
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 238 ----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
++ + Q MT+ + + G +R+ +A
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPE--------QERKEKA------- 110
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
E LK++GL+ DE+ SGG ++RV ALA
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
L MDE + LD + + +++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 409 GLIVYLGPRELVL 421
G IV +G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQET 949
+LN +S + R G + G SG GK+TL+ ++A +G + IS K E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL--KPEI 78
Query: 950 FTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL-VELNP 1005
+ + YC Q +P + TVY++L++ +R +F++++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALPDTI 130
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 131 LTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 63/252 (25%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE---FEP 237
LKDVS + G ++G SGK+TL L G L L +G +T G + E ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGMVLSEETVWDV 79
Query: 238 QRVAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+R + Q+ DN TV++ +AF GV R +M+ +D+ + G++
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMVERVDQALRQVGMED------ 132
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL--- 353
F+ +E + L SGGQK+RV LAL
Sbjct: 133 FLN------REPHRL--------------------------SGGQKQRVAIAGVLALQPD 160
Query: 354 --FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL-----FDDIILL 406
+DE ++ LD +++ ++RQ T V+S+ T+DL D +I++
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGIT-VLSI------THDLDEAAQADRVIVM 213
Query: 407 SDGLIVYLGPRE 418
+ G I+ G E
Sbjct: 214 NKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 61/274 (22%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNM--DEFE 236
L DVS I +T ++GP GK+T L + D + +V G +T+ G N+ + +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 237 P---QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
P +R + Q N + ++ + +A+ + QG ++D+R E+
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG------DIDERVEES------- 160
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++ AA + + L GLD +SGGQ++R+ A+A
Sbjct: 161 ----LRRAALWDEVKDQLDSS-----GLD--------------LSGGQQQRLCIARAIAP 197
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
+ MDE ++ LD T +I + I + V +Q A +SD
Sbjct: 198 DPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAAR----------ISD 247
Query: 409 GLIVYLGPRELVLDFFESMG-FKCPERKGVADFL 441
V+L ELV +F ++ F+ PE + V D++
Sbjct: 248 KTAVFLTGGELV-EFDDTDKIFENPESQRVEDYI 280
|
Length = 285 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 52/266 (19%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
ILK ++ I G + ++GP SGK+TL +AG + + G + + G ++ + EP+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQ--GV-GSRFDMLTELDKRENEAGIKPDPDIDV 296
A H+G LAF + GV + F L KR+ + + DP ++
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP-LEF 126
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR------VTTGPA 350
++ + LK++G+D + + + G SGG+K+R
Sbjct: 127 L-----------EIINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 351 LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII-----L 405
LA+ +DE +GLD I I + + N +I+ Q L D I +
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ------RLLDYIKPDYVHV 224
Query: 406 LSDGLIVYLGPRELVLDFFESMGFKC 431
+ +G I+ G EL + E G+
Sbjct: 225 MQNGKIIKTGDAELAKE-LEKKGYDW 249
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 37/185 (20%), Positives = 54/185 (29%), Gaps = 65/185 (35%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIH 963
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023
E + L+ L +VG SG
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASG---SG 63
Query: 1024 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTV------KNTVETGRTVVCTI 1075
RL +A+ L P ++ +DE TS LDA A+++ E TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1076 HQPSI 1080
+
Sbjct: 124 NDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 55/200 (27%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE--F 235
L L +++ I G +T+++G GK++LLLA+ G++ + G+V ++ N E F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 236 EPQRV-----AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP 290
E R AY +Q + TV E + F + R+ +T+
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD--------ACSL 119
Query: 291 DPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTG 348
PDID+ TE E RGI SGGQ++R+
Sbjct: 120 QPDIDLLPFGDQTEIGE---------------------------RGINLSGGQRQRICVA 152
Query: 349 PAL-----ALFMDEISNGLD 363
AL +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 54/217 (24%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNMDEFEP- 237
++ +S I +T ++GP GK+T + L +L+ +KV G V + G N+ ++P
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI--YDPR 80
Query: 238 ------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+R + Q N M++ E +A+ R + D+ D
Sbjct: 81 ININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADL---------------D 124
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
++ +K AA + + L ++ G+SGGQ++R+ AL
Sbjct: 125 EIVESALKGAALWQEVKDKL-------------------NKSALGLSGGQQQRLCIARAL 165
Query: 352 A-----LFMDEISNGLDSSTTFQI---VNSIRQNIHI 380
A L MDE + LD T ++ ++S+R + I
Sbjct: 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTI 202
|
Length = 259 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
LS Q++R+ IA L NPS+I +DE TS LD A ++ V+ + +I
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISI 199
|
Length = 269 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215
P + L V G++ G +TLL G P +GK+TL L LA +
Sbjct: 19 PPPLRWL-----VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 329 VGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNG 383
V + + G+SGGQ++RV ALA L +DE ++ LD T ++ ++ + G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS-LQAQLG 151
Query: 384 TAVISLLQPAPETYDLFDDIILLSDG 409
V+ + E L D +++L DG
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 338 SGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP 392
SGG ++RV ALA L DE + LD + QI++ +++ + GTA+I +
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTALILI--- 210
Query: 393 APETYDL------FDDIILLSDGLIVYLGPRELVLD 422
T+DL D + ++ G IV GP E +
Sbjct: 211 ---THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 73/244 (29%)
Query: 188 IRPGSMTLLLGPPSSGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFEPQ---RVAA 242
+ G L+GP +GKT+LL AL G L SLK+ NG + E +P+ + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAA 302
++ Q + + T+R+ + A
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG-----------------------------------NPDA 450
Query: 303 TEGQEANVLTDYYLK------VLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
++ Q L + ++ GL DT +GD+ G+S GQ +R+ AL
Sbjct: 451 SDEQLQQALENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQ 505
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIH---ILNGTAVISLLQPAPETYDLFDDIILLSD 408
L +DE + LD+ + ++ ++ L T + L +D I ++ D
Sbjct: 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-------WDQIWVMQD 558
Query: 409 GLIV 412
G IV
Sbjct: 559 GQIV 562
|
Length = 588 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 63/219 (28%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T+L +++ +RPG L+ G +GKT+LL ALAG SGR++ + F PQ
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPADSALLFLPQ 463
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
R Y+ Q T+RE L + N A D ++
Sbjct: 464 R--PYLPQG-------TLREALCYP--------------------NAAPDFSDAEL---- 490
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG---ISGGQKRRVTTGPAL---- 351
VL +GL A+ L DE R +SGG+++R+ L
Sbjct: 491 ---------VAVLHK-----VGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 352 -ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389
+F+DE ++ LD T ++ +++ L VIS+
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEE---LPDATVISV 570
|
Length = 604 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 42/168 (25%)
Query: 905 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG---YLKK---QETFT 951
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 952 RISGYCEQNDIHSPL-VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
RI +Q + P ++YE++ + A + + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGARI-----------NGYTGDMDELVE-RSLRKAA 139
Query: 1011 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 43/197 (21%)
Query: 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGSITISGYLKKQETFTRISGY 956
+S R G + L GV GAG+T L + L G R G G I L +E I+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIM----LNGKE----INAL 330
Query: 957 CEQNDIHSPLVTVYE------------------SLLY---SAWLRLPPEVDSETRKMFIE 995
+ LV + E +L + W++ P ++ + +
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK--PARENAVLERYRR 388
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+ ++ N Q+ LS ++++ IA L A+P ++ +DEPT G+D A
Sbjct: 389 ALN--IKFNHAEQA------ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440
Query: 1056 IVMRTVKNTVETGRTVV 1072
+ + +++ V+
Sbjct: 441 DIYQLIRSIAAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 72/300 (24%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTT---LLLALAGKLDSSLKVSGRVTYNGH 230
LK+VS I G +LG SGK+T +L L +K+ G +T +
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKE 76
Query: 231 NMDEFEPQRVAAYISQH-DNH-IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
N+ E ++ I Q+ DN IG TV + +AF EN+ +
Sbjct: 77 NLKEI--RKKIGIIFQNPDNQFIG-ATVEDDIAFGL------------------ENKK-V 114
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
P MK ++ D KV G++ D L D+ + +SGGQK+RV
Sbjct: 115 PPKK-----MKD---------IIDDLAKKV-GME---DYL--DKEPQNLSGGQKQRVAIA 154
Query: 349 PALAL-----FMDEISNGLD---SSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD-- 398
LAL DE ++ LD +I+ +R+ +IS+ T+D
Sbjct: 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT----RKKTLISI------THDMD 204
Query: 399 ---LFDDIILLSDGLIVYLG-PRELVLD--FFESMGFKCPERKGVADFLQEVTSRKDQQQ 452
L D +I+ S+G ++ G P+E++ + E P ++ L+ + ++++
Sbjct: 205 EAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISGYLKKQETFTR 952
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 953 ISGYC---EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL------ 1003
+ QN +H T+ ++ Y+ T + E+I E +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----------TEQYSREQIEEAARMAYAMDF 462
Query: 1004 -NPLRQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
N + L +G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 463 INKMDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 27/169 (15%)
Query: 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSITISGYLKKQETFTRISGYC 957
G+ + ++G +G GKTT + +LAG G I + Y K Q G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 958 EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017
TV + LL S D T F EI + +++ + V
Sbjct: 77 ----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV-----P 114
Query: 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
LS + +R+ IA L + I +DEP++ LD + + ++ E
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 907 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT----GSITISGYLKKQETFTRISG 955
+TAL+G SG GK+T + D+ G G I +S + E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISM 103
Query: 956 YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV---- 1011
++ + +++E++ Y +R R+ +EE +E N LR + +
Sbjct: 104 VFQKPNPFPK--SIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWDEV 151
Query: 1012 --GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 152 KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 36/271 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQETFT 951
LN S F+ +T ++G +G+GK+T++ + G +TG I G I LKK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK--- 83
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAW-------LRLPPEVDSETRKMFIEEIMELVELN 1004
E + + V++ Y + + P E ++ +++ EL++L
Sbjct: 84 ------EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLV 137
Query: 1005 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VKN 1063
L + V LS Q++R+ +A + + + + +DEPT GLD + + +
Sbjct: 138 QLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 1064 TVETGRTVVCTIHQPSIDIFESFDEAIPGVQ-KIKDGCNPATWMLEVTARSQELA-LGVD 1121
E + ++ H + DE I + K+ +P E+ + + L + +D
Sbjct: 197 NKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSP----FEIFSNQELLTKIEID 251
Query: 1122 FHNIYKL--------SDLYRRNKALIEELSK 1144
+Y+L DL +N IEE +K
Sbjct: 252 PPKLYQLMYKLKNKGIDLLNKNIRTIEEFAK 282
|
Length = 289 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 38/190 (20%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI 962
+PG + A++G SGAGKTTL+ ++ G + G +
Sbjct: 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKG--------------------------RGEEK 440
Query: 963 HSPLVTVYESLLYSAWLRLPPEVDSETR-KMFIEEIMELVELNPLRQSLVGLPGVSG--- 1018
+ P E + +P E + E +E + ++ G+S
Sbjct: 441 YRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVL 500
Query: 1019 -------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRT 1070
LST Q++R +A L P+++ +DE + LD A V R + E G T
Sbjct: 501 YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGIT 560
Query: 1071 VVCTIHQPSI 1080
++ H+P +
Sbjct: 561 LIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080
L + + S++ +DEP +GL + ++ +K E G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNG 229
PT + + VS ++ G + ++G SGK+ L A+ G L V G + ++G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 230 HN---MDEFEPQRV----AAYISQ 246
+ + E E +++ A I Q
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQ 95
|
Length = 316 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 51/210 (24%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLL--------LALAGKLDSSLKVSGRVTYN-GHN 231
LK +S I S+ +GP GK+T L L A +L+ +++ GR Y+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 232 MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+DE ++ + Q N + ++ E +A+ R GV ++N
Sbjct: 79 VDEL--RKNVGMVFQRPNPFPK-SIFENVAYGLRVNGV------------KDNA------ 117
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
F++ E + L D L E +SGGQ++R+ A+
Sbjct: 118 -----FIRQRVEETLKGAALWDEVKDKL-----------KESAFALSGGQQQRLCIARAM 161
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQ 376
A L MDE ++ LD +T ++ I +
Sbjct: 162 AVSPSVLLMDEPASALDPISTAKVEELIHE 191
|
Length = 250 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 47/202 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNG-----HNMD 233
L +++ I S+T L+GP GK+T L L L +K+ G V Y G +N D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 234 EFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
E +R + Q N M++ + +++ + G DK+ K D
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTK---------DKK------KLDEI 126
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
++ +K +A + + L L +SGGQ++R+ LA
Sbjct: 127 VEQSLKKSALWNEVKDKLNTNALS-------------------LSGGQQQRLCIARTLAI 167
Query: 353 ----LFMDEISNGLDSSTTFQI 370
+ MDE ++ LD +T +I
Sbjct: 168 EPNVILMDEPTSALDPISTGKI 189
|
Length = 254 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 52/266 (19%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL---DSSLKVSGRVTYNGHNMDEFEP 237
L DV+ I GS ++G SGK+TLL L G L ++ + RV G + +P
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 238 --QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++V ++ + E TV + + F GV
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE------------------------ 118
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
++A ++++GL + L +SGGQ RRV LA
Sbjct: 119 ----------EDAKQKAREMIELVGLP--EELL--ARSPFELSGGQMRRVAIAGVLAMEP 164
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
L +DE + GLD +++ + +H G + + + D I+++ G
Sbjct: 165 EVLVLDEPTAGLDPKGRKEMMEMFYK-LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
Query: 411 IVYLG-PRELVLD--FFESMGFKCPE 433
+ G PRE+ D E++G PE
Sbjct: 224 VFLQGTPREIFADPDELEAIGLDLPE 249
|
Length = 290 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 1016 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1071
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1072 VCTIHQPSIDIFESFDEAI 1090
+ H P ++ E D+ I
Sbjct: 135 IVITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 44/205 (21%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L++V+ ++PG M + GP SGK+TLL + D S G + ++ + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKL--- 382
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
++ ++ R LA V S+ L N A +PD
Sbjct: 383 QLDSW-------------RSRLA-------VVSQTPFLFSDTVANNIALGRPD------- 415
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPAL----- 351
A E + L + +L L DT VG+ RG+ SGGQK+R++ AL
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 352 ALFMDEISNGLDSSTTFQIVNSIRQ 376
L +D+ + +D T QI++++RQ
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ 496
|
Length = 569 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG---YLKKQETFT 951
LNG++ + G L A++G G GK++L+ L + G + + G Y+ +Q
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI- 710
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL---RQ 1008
QND ++ E++L+ L + +E L +L L +
Sbjct: 711 -------QND------SLRENILFGKALNEK------YYQQVLEACALLPDLEILPSGDR 751
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
+ +G GV+ LS Q++R+++A + +N I D+P S +DA
Sbjct: 752 TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 63/251 (25%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-- 237
+LK ++ +T L+G GK+TL + L+G L G V + G +D +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 238 ----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
Q+VA + I + +AFS R GV E+ +R +EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
L + + I+ +S GQK+RV AL
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIR----QNIHILNGTAVISLLQPAPETYDLFDDII 404
L +DE + GLD + Q++ IR Q H++ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 405 LLSDGLIVYLG 415
+L G I+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 6/171 (3%)
Query: 552 TKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIA--KLPVFYKQRDLRFYPAWSYA 609
P + N G Y + + + G I+++I K ++ + Y
Sbjct: 82 EITPLFNPNSGYAYYLLGLL-LFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYL 140
Query: 610 LPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAG 669
L + + + +++ + L + + N+ +LL AL +G+
Sbjct: 141 LGKILGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLA---YIALGALLGSLF 197
Query: 670 RNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIV 720
+N A+ S +L+L G + ++ + W + P + ++
Sbjct: 198 KNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL 248
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 63/251 (25%), Positives = 94/251 (37%), Gaps = 49/251 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNM---- 232
T+L VS ++T L+GP SGKTT L L D S + SG V G ++
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
D E +R + Q N M++ + + R + R + R E G+
Sbjct: 95 DVLEFRRRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL---- 149
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
D D L D R +SGGQ++ + LA
Sbjct: 150 ----------------------------WDAVKDRL-SDSPFR-LSGGQQQLLCLARTLA 179
Query: 353 -----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407
L +DE ++ LD +TT +I IR + + VI + + + D L
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAALFF 236
Query: 408 DGLIVYLGPRE 418
DG +V GP E
Sbjct: 237 DGRLVEEGPTE 247
|
Length = 276 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 56/251 (22%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-P 237
T++ +++ I+ G+M LLGP GKTT+L +AG L+ G++ +G ++
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDVTHRSIQ 76
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
QR + Q M++ E + + + GV E +R EA
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA----------- 120
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----A 352
L+++ L D V D+ ISGGQ++RV AL
Sbjct: 121 ------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKV 157
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSDG 409
L DE + LD++ + S+R+ I L I+ L E + + D +I+++ G
Sbjct: 158 LLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
Query: 410 LIVYLG-PREL 419
I+ +G P+EL
Sbjct: 214 KIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 56/216 (25%)
Query: 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM- 232
L + K+V I +T +GP GK+T+L L +V G+VT++G N+
Sbjct: 22 SFLAV-KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 233 ----DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
D E +R + Q N + ++ + +A+ AR G D L E R+
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQ----- 134
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYY---LKVLGLDICADTLVGDEMIRGISGGQKRRV 345
L D LK GL +SGGQ++R+
Sbjct: 135 --------------------AALWDEVKDKLKQSGL--------------SLSGGQQQRL 160
Query: 346 TTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQ 376
A+A + MDE + LD +T +I + +
Sbjct: 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196
|
Length = 264 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 1006 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L+QS G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 145 LKQS-----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 59/206 (28%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR 952
VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 953 ISGYCEQNDIHSPLVTVYESLLY---SAWLRLPPEVDSETRK---MFIEE----IMELVE 1002
Q +I V S+ Y AW+ +++ R F EE + + V
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 1003 LNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
++ L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 1052 RAAAIVMRTVKNTVETGRTVVCTIHQ 1077
V+ G+T V HQ
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 35/225 (15%)
Query: 871 EVVYSVDMPQEMKLQGV---HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927
E V +V PQ +K++ + + +K L N VS +TAL+G SG GK+T + L
Sbjct: 3 EGVQNVAQPQ-IKVENLNLWYGEKQALKN-VSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60
Query: 928 RK---TGGYITGSITISG---YLKKQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWL 979
I G ++I G Y + + G Q P+ ++Y+++ Y
Sbjct: 61 MNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPM-SIYDNVAYG--- 116
Query: 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLV--------GLPGVSGLSTEQRKRLTIAV 1031
P + +K ++ +VE N LR + + P +S LS Q++RL IA
Sbjct: 117 ---PRIHGANKK----DLDGVVE-NALRSAALWDETSDRLKSPALS-LSGGQQQRLCIAR 167
Query: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
L P II DEPTS LD + A + + N ++ T+V H
Sbjct: 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.98 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.98 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.98 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.98 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.98 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.98 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.98 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.98 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.98 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.98 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.98 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.98 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.98 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.98 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.98 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.98 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.98 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.98 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.98 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.98 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.98 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.98 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.98 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.98 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.98 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.98 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.98 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.98 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.98 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.98 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.98 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.98 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.98 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.98 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.97 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.97 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.97 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.97 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.97 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-258 Score=2378.53 Aligned_cols=1307 Identities=51% Similarity=0.883 Sum_probs=1214.7
Q ss_pred CChHHHhHHHHhhcCCCCCcccccccccCCCCcccccccCCCChHhhHHHHHHhhcCCCCChHHHHHHHHhHHhhcCCCC
Q 038815 36 DDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVSTLGPQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDL 115 (1436)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (1436)
+||||+|+|||+|||||++| +++.+..+. ++|+.++++++++.++++..+..++|+++++.++|+|++++ +.
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~----~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR----SLLRSIFES--EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc----hhhhhhccC--cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999998 444432222 59999999999999999999999999999999999999998 89
Q ss_pred CcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhhhhhccccccccccccccccccceeeeceEEEEeCCeEEE
Q 038815 116 PEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTL 195 (1436)
Q Consensus 116 p~~~v~~~~l~v~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ 195 (1436)
|.++++++++.|+|++..| ||+.|...+.++ .++...+.. ++...+||+|+||.++||||++
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~------------~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~l 145 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLE------------SILRMLGKR--KKKKIQILKDISGIIKPGEMTL 145 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHH------------HHhhhcccc--ccccceeecCcceeEcCCceEE
Confidence 9999999999999999866 999999988877 333222222 4456789999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccch
Q 038815 196 LLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDM 275 (1436)
Q Consensus 196 llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 275 (1436)
++||||||||||||+|+|.++..++..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|+++++|++
T Consensus 146 vLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~- 224 (1391)
T KOG0065|consen 146 VLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD- 224 (1391)
T ss_pred EecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc-
Confidence 9999999999999999999998878899999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhh-----hhh
Q 038815 276 LTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT-----GPA 350 (1436)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsi-----a~a 350 (1436)
+..|+++.. ..+|++++++||+||+||+|||+++||+||||||||+| +++
T Consensus 225 --~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 225 --EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred --cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCc
Confidence 666766531 26899999999999999999999999999999999999 677
Q ss_pred hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChHHHHHHHHhcCCC
Q 038815 351 LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFK 430 (1436)
Q Consensus 351 ~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf~ 430 (1436)
.++||||+|+|||++|+.++++.||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~ 359 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFK 359 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhhHHHHHHhcCCCCCCCCCcccccCCcccCCHH
Q 038815 431 CPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKK 510 (1436)
Q Consensus 431 cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~ 510 (1436)
||+|+++|||+++++++++++++|..+..|+.+.+++||.+.|.+++.++++..+++.++++++.++.++..++|.+++|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 038815 511 ELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAK 590 (1436)
Q Consensus 511 ~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~ 590 (1436)
+|++.|+.|++++++||.+++++++++.+++|+++|++|+++++ .+..++..+.|++||++++.+|++++|+++++++
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~ 517 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQR 517 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999885 4556788999999999999999999999999999
Q ss_pred chhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038815 591 LPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGR 670 (1436)
Q Consensus 591 ~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~ 670 (1436)
+|||+|||+..||||||+++|.+++++|.+++++++|.+|+||++||.+++++||++||+++++++|++++||+++++++
T Consensus 518 ~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~ 597 (1391)
T KOG0065|consen 518 LPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSR 597 (1391)
T ss_pred cchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHHHHHhhcCCcccccc------------CC---
Q 038815 671 NMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHSWRKFT------------TN--- 735 (1436)
Q Consensus 671 ~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al~~nef~~~~~~~~~------------~~--- 735 (1436)
++.+|+.+|++.++++++++||+||+.+||+||+|++|+||++|++++++.|||++++|.|.. ..
T Consensus 598 t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~ 677 (1391)
T KOG0065|consen 598 TLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAA 677 (1391)
T ss_pred hHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999971 11
Q ss_pred CccchhHHhhcccCcc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecCcccccccccCCCccc
Q 038815 736 SNESLGVQALKSRGFF-----PHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESESNEKDNRTGGTLQ 810 (1436)
Q Consensus 736 ~~~~~G~~~L~~~~~~-----~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1436)
...+.|.++++.+++. +.++|+|+|+|+++||+++|+++++++++|+++....++++..+....+.......
T Consensus 678 ~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~--- 754 (1391)
T KOG0065|consen 678 TGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG--- 754 (1391)
T ss_pred hccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc---
Confidence 2356899999988887 78899999999999999999999999999999999888876544332221110000
Q ss_pred CCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEeceeeeeecccchhhcccccC
Q 038815 811 SSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHED 890 (1436)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 890 (1436)
.. .. .+ . ........+.++..|+++..++++||.|.+++|-+++.++ +
T Consensus 755 --~~---~~---------------~~-~--------~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~ 802 (1391)
T KOG0065|consen 755 --SS---SE---------------IE-K--------LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---G 802 (1391)
T ss_pred --cc---cc---------------cc-c--------cccccccccccccCCCccccccccceEEEEeCCccccccc---c
Confidence 00 00 00 0 0000001235677888899999999999999998877666 5
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++++|+||||.++||.+|||||+||||||||||+||||+++|.++|+|++||+|+++++|+|.+|||+|+|+|.+.+|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 78999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-CcceecCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGL 1049 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p-~il~lDEPTsgL 1049 (1436)
|+|.|+|.||+|.+++.++|.++||+|++.|||++++|.+||.|| +|||++|||||+||+||++|| .|||||||||||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 999999999999999999999999999999999999999999999 999999999999999999999 899999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh----------------------------hcCCcccCCCCCC
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE----------------------------AIPGVQKIKDGCN 1101 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~----------------------------~~~g~~~~~~~~N 1101 (1436)
|+++|..|++++|+++++|+||||||||||++|||.||+ +++|+ +|++..|
T Consensus 962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~N 1040 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDEN 1040 (1391)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCC
Confidence 999999999999999999999999999999999999999 23444 5777779
Q ss_pred ccchhhhccccchhhhccccHHHHHhhcHHHHHHHHHHHHhcCCCCC-CCCCCCCCccCCcHHHHHHHHHHHHHHHhhcC
Q 038815 1102 PATWMLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPG-SKDIYFPTQYSRSFFMQFMACLWKQHWSYWRN 1180 (1436)
Q Consensus 1102 PAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~ 1180 (1436)
||||||||++.+.+...+.||+++|++|++|++++++++++++++++ ..+..++++|++|+|.|++.|+||++++|||+
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 99999999999888888899999999999999999999999999888 77888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHHHhhhcCCCCChH
Q 038815 1181 PPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGM 1260 (1436)
Q Consensus 1181 ~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~ 1260 (1436)
|+|+++|++++++.||++|++||++|+ ++||+||.+|++|+++++.+..++...+|.+..||.+++||+++|||||.
T Consensus 1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~ 1197 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWT 1197 (1391)
T ss_pred cHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHH
Confidence 999999999999999999999999995 68999999999999999999998888889899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 038815 1261 PYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLW 1340 (1436)
Q Consensus 1261 ~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~ 1340 (1436)
||++||+++|+||+++++++|++|+|+|+||.+++.+|+||+++++++.+|++++|+|+++++||.++|+++++++++++
T Consensus 1198 ~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1198 PFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccccC----------CCCcHHHHHHhhcC----Cccccc
Q 038815 1341 NVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME----------NGETVKQFVRNYFD----FKHEFL 1406 (1436)
Q Consensus 1341 ~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~g----~~~~~~ 1406 (1436)
++||||++|++.||.||+||||+||++|.++|++..++||.+..|. +|+||++|+++++| |.++..
T Consensus 1278 ~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~ 1357 (1391)
T KOG0065|consen 1278 NLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL 1357 (1391)
T ss_pred HHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc
Confidence 9999999999999999999999999999999999999999998872 56799999999999 999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 038815 1407 GVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436 (1436)
Q Consensus 1407 ~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1436 (1436)
.....+..+|.+++.+++.+++||.|+|||
T Consensus 1358 a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1358 ATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred ceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-235 Score=2339.71 Aligned_cols=1401 Identities=58% Similarity=1.015 Sum_probs=1237.1
Q ss_pred CCCCcccccCCCCCCCCCC------CCCCChHHHhHHHHhhcCCCCCcccccccccCC------CC---cccccccCCCC
Q 038815 14 SPSASTWRSTSEGTFPRSP------KEEDDDEEALKRAALENLPTYNSPFRKMITNSS------GE---ATEADDVSTLG 78 (1436)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~ 78 (1436)
+.|+++|.. +++|++.+ +..|||||+|+|||+||||||+| +|++++.+. |+ .+ ++|+++|+
T Consensus 15 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (1470)
T PLN03140 15 SVSRSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSR-LRTSIMKSFVENDVYGNQLLHK-EVDVTKLD 90 (1470)
T ss_pred Hhhhhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhh-hhhhhhhccccccccccccccc-ccccccCC
Confidence 446667744 68885532 13678999999999999999999 999999642 22 12 59999999
Q ss_pred hHhhHHHHHHhhcCCCCChHHHHHHHHhHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhhhh
Q 038815 79 PQARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTC 158 (1436)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~ 158 (1436)
.++++.+++++++++++|+++|++++++|.|++|+++|++|||||||+|+|++.++++++||++|.+.+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~-------- 162 (1470)
T PLN03140 91 GNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAE-------- 162 (1470)
T ss_pred hHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hccccccccccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc
Q 038815 159 KRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238 (1436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 238 (1436)
.+...++...+++.+++||+||||.++|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..++
T Consensus 163 ----~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~ 238 (1470)
T PLN03140 163 ----SALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPR 238 (1470)
T ss_pred ----HHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhccc
Confidence 2222112222333567899999999999999999999999999999999999988777899999999998877677
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHH
Q 038815 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKV 318 (1436)
Q Consensus 239 ~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 318 (1436)
+.++||+|+|.|++++||+|||.|+++|++++.+++++.+.++++++.++.|+.+++.++++...++.+++..++.+++.
T Consensus 239 ~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~ 318 (1470)
T PLN03140 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI 318 (1470)
T ss_pred ceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHH
Confidence 88999999999999999999999999999887777766677778887778888888889998888877788889999999
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 319 LGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 319 lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
+||++|+||.|||+++++|||||||||+||+++ ++||||||+|||+.++.++++.|+++++..+.|+|+++|||+
T Consensus 319 lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~ 398 (1470)
T PLN03140 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPA 398 (1470)
T ss_pred cCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 999999999999999999999999999997654 699999999999999999999999998866889999999999
Q ss_pred hhHHhhcCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHH
Q 038815 394 PETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAF 473 (1436)
Q Consensus 394 ~~~~~lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f 473 (1436)
++++++||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|++++++++|+++|
T Consensus 399 ~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~ 478 (1470)
T PLN03140 399 PETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERF 478 (1470)
T ss_pred HHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888887777788888999999999
Q ss_pred HhchhhHHHHHHhcCCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeecc
Q 038815 474 QSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTK 553 (1436)
Q Consensus 474 ~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~ 553 (1436)
++++.++++.++++.|.+++..++.....++|..++++|++.|++|++++++||+..+++++++.+++|+++|++||+++
T Consensus 479 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~ 558 (1470)
T PLN03140 479 KSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTE 558 (1470)
T ss_pred HhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999888888777666666666667789999999999999999999999999999999999999999999999887
Q ss_pred CCCCccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 038815 554 MPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYY 633 (1436)
Q Consensus 554 ~~~~~~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~ 633 (1436)
++.....++..+.|++||++++++++++++++.++.+||||+|||+.+||++|+|++|++++++|+.++++++|++++||
T Consensus 559 ~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~ 638 (1470)
T PLN03140 559 MHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYY 638 (1470)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 66544456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHH
Q 038815 634 VIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMM 713 (1436)
Q Consensus 634 ~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ 713 (1436)
|+||++++++||.|+++++++++++.++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||+.
T Consensus 639 m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~ 718 (1470)
T PLN03140 639 SIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLS 718 (1470)
T ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccccc-cCCCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceee
Q 038815 714 YAQNAIVANEFLGHSWRKF-TTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVI 792 (1436)
Q Consensus 714 ya~~al~~nef~~~~~~~~-~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~ 792 (1436)
|+++|+++|||.+..|.+. +.+...+.|+++|+.+++..++.|+|++++++++|+++|+++++++|+|+++....+..+
T Consensus 719 Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~ 798 (1470)
T PLN03140 719 YGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAII 798 (1470)
T ss_pred HHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccc
Confidence 9999999999999888643 233356789999999999988999999999999999999999999999999766655554
Q ss_pred ecCcccccccccCCC-cccCCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEec
Q 038815 793 FDESESNEKDNRTGG-TLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDE 871 (1436)
Q Consensus 793 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 871 (1436)
.++............ .....+.......... ..+........... ...........+.++.+|+.+..++|+|
T Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1470)
T PLN03140 799 SEETAEEMEGEEDSIPRSLSSADGNNTREVAI--QRMSNPEGLSKNRD----SSLEAANGVAPKRGMVLPFTPLAMSFDD 872 (1470)
T ss_pred cccchhhhhccccccccccccccccccccccc--cccccccccccccc----cccccccccccccccccCCCcceEEEEE
Confidence 221111000000000 0000000000000000 00000000000000 0000000112234566788899999999
Q ss_pred eeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccccc
Q 038815 872 VVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT 951 (1436)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~ 951 (1436)
++|+++.+.+.+..+...+++.+|+|||+.++||+++|||||||||||||||+|+|+.++|..+|+|.+||.+.++..++
T Consensus 873 v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~ 952 (1470)
T PLN03140 873 VNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 952 (1470)
T ss_pred EEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhh
Confidence 99999988765555555566789999999999999999999999999999999999987777899999999876555567
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038815 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1031 (1436)
Q Consensus 952 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~ 1031 (1436)
+.+|||+|+|.|++.+||+|+|.|++.+|.|.+.+.+++.++++++++.+||.+++|+.+|.+++++|||||||||+||+
T Consensus 953 ~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~ 1032 (1470)
T PLN03140 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAV 1032 (1470)
T ss_pred hheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHH
Confidence 88999999999999999999999999998877667777788899999999999999999999888999999999999999
Q ss_pred HHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh-----------------------
Q 038815 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE----------------------- 1088 (1436)
Q Consensus 1032 ~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~----------------------- 1088 (1436)
||+++|+||||||||||||+.++..+++.|++++++|+|||||+|||+.++++.||+
T Consensus 1033 aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~ 1112 (1470)
T PLN03140 1033 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKI 1112 (1470)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccH
Confidence 999999999999999999999999999999999989999999999999999999998
Q ss_pred -----hcCCcccCCCCCCccchhhhccccchhhhccccHHHHHhhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCcHH
Q 038815 1089 -----AIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFF 1163 (1436)
Q Consensus 1089 -----~~~g~~~~~~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1163 (1436)
.++|+++||+++||||||||+++.+.+...+.||++.|++|+++++++++++++..+.++.++..++++|++|+|
T Consensus 1113 ~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1192 (1470)
T PLN03140 1113 IEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTW 1192 (1470)
T ss_pred HHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHH
Confidence 113556799999999999999987666556679999999999999998888888776666555556778999999
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHH
Q 038815 1164 MQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAV 1243 (1436)
Q Consensus 1164 ~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 1243 (1436)
+|+++|+||+++++||||.|+.+|+++++++||++|++||+++++..+++++++++|++|++++|+++.++++++|.+..
T Consensus 1193 ~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~ 1272 (1470)
T PLN03140 1193 GQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAV 1272 (1470)
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038815 1244 ERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMT 1323 (1436)
Q Consensus 1244 er~vf~RE~~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~ 1323 (1436)
||+||+|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++
T Consensus 1273 eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~ 1352 (1470)
T PLN03140 1273 ERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLT 1352 (1470)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccccC-C----CCcHHHHHHhh
Q 038815 1324 PNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME-N----GETVKQFVRNY 1398 (1436)
Q Consensus 1324 p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~----g~~~~~~~~~~ 1398 (1436)
||.++|+++++++++++++||||++|+++||+||+|+||+||++|+++|+++|||+|.+..|+ + ++++++|++++
T Consensus 1353 p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1432 (1470)
T PLN03140 1353 PNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDH 1432 (1470)
T ss_pred CcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999887653 2 36899999999
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 038815 1399 FDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNFQNR 1436 (1436)
Q Consensus 1399 ~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1436 (1436)
|||+++++|++++++++|+++|++++++++|++|||||
T Consensus 1433 ~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1433 YGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred cCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-187 Score=1879.61 Aligned_cols=1258 Identities=30% Similarity=0.523 Sum_probs=1038.5
Q ss_pred CCChHHHHHHHHhHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhhhhhcccccccccccc
Q 038815 94 SVDNEHFLLKLRDRFDAVGIDLP--EVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQIL 171 (1436)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~p--~~~v~~~~l~v~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1436)
++|+++|++.++++.++.+...| +++|+||||+|++. ..+...+||+.|.+.+... .....+. .
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~------------~~~~~~~-~ 67 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILT------------RGFRKLK-K 67 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHH------------HHHHHhc-c
Confidence 57899999886666666665544 99999999999994 3366678999999887654 1111110 0
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEEcCccCCCCC--ccceEEEEcCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFE--PQRVAAYISQHD 248 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d 248 (1436)
++++++++||+|||+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.|||+++++.. .++.++||+|+|
T Consensus 68 ~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d 147 (1394)
T TIGR00956 68 FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETD 147 (1394)
T ss_pred cCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccc
Confidence 223456789999999999999999999999999999999999974321 25999999999875432 245699999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.|++++||+|||.|+++++.+..+.+ ...+.+ ..+...+.+++.+||++++||.
T Consensus 148 ~~~~~lTV~E~l~f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~ 201 (1394)
T TIGR00956 148 VHFPHLTVGETLDFAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTK 201 (1394)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCce
Confidence 99999999999999988764321100 001111 0122346789999999999999
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
||++.+++|||||||||+||+++ ++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|
T Consensus 202 vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v 281 (1394)
T TIGR00956 202 VGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV 281 (1394)
T ss_pred eCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Confidence 99999999999999999997665 5999999999999999999999999987667899999999999999999999
Q ss_pred EEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhhHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLT 483 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~ 483 (1436)
++|++|+++|+|+++++.+||+++||+||++.|+|||++++++++++ +++...+. ....++++++++|++|+.++++.
T Consensus 282 ~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~ 359 (1394)
T TIGR00956 282 IVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLM 359 (1394)
T ss_pred EEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999999999999999999999999987653 33322111 12367899999999999888777
Q ss_pred HHhcCCCCCC---------------CCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhe
Q 038815 484 AELRTPFDKS---------------KSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSL 548 (1436)
Q Consensus 484 ~~l~~~~~~~---------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gsl 548 (1436)
++++.+.++. +..+.....++|..+++.|++.|++|+++.++||+..++.++++.+++|+++|++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~ 439 (1394)
T TIGR00956 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSV 439 (1394)
T ss_pred HHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 6655322110 0011122345688999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHH
Q 038815 549 FFRTKMPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWV 628 (1436)
Q Consensus 549 f~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~ 628 (1436)
||+.+. + ..+.+.+.|++||++++.++.+++++..++.+|++|+|||..++|++++|++|++++++|+.++.+++|+
T Consensus 440 F~~~~~--~-~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~ 516 (1394)
T TIGR00956 440 FYNLPK--N-TSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFN 516 (1394)
T ss_pred hcCCCC--C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996543 2 2456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHh
Q 038815 629 FLTYYVIGFDPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYW 708 (1436)
Q Consensus 629 ~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~ 708 (1436)
+++|||+||.+++++||.|+++++++++++.+++++++++++++.+|+.+++++++++++++||++++++||+||+|++|
T Consensus 517 ~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~y 596 (1394)
T TIGR00956 517 IILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYY 596 (1394)
T ss_pred hhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHHHHHhhcCCcccccc--C----------------------CCccchhHHhhcccCcccCCchhHHHHHHH
Q 038815 709 CSPMMYAQNAIVANEFLGHSWRKFT--T----------------------NSNESLGVQALKSRGFFPHAYWYWLGLGAV 764 (1436)
Q Consensus 709 isP~~ya~~al~~nef~~~~~~~~~--~----------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l 764 (1436)
+||+.|++++++.|||.+..+.|.. | +...+.|+++|+. ++.....|+|+|++++
T Consensus 597 isp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil 675 (1394)
T TIGR00956 597 VNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGII 675 (1394)
T ss_pred cCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHH
Confidence 9999999999999999999998841 1 1124588999985 4444567999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCceee-ecCcccccccccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccc
Q 038815 765 IGFLLVFNVGFTLSLTFLNKFEKPRAVI-FDESESNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVT 843 (1436)
Q Consensus 765 ig~~v~f~i~~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1436)
++|+++|.++++++++|.++.......+ .++.......... . ..+ .. .. . .++.......
T Consensus 676 ~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~----~~--~~--~-----~e~~~~~~~~-- 736 (1394)
T TIGR00956 676 IGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAG-E---TSA----SN--KN--D-----IEAGEVLGST-- 736 (1394)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCceEeeccccccchhhcc-c---ccc----cc--cc--c-----ccccccCCCC--
Confidence 9999999999999999998655544332 2221110000000 0 000 00 00 0 0000000000
Q ss_pred hhhHHHhhhhhccCccccCCCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHH
Q 038815 844 ETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 923 (1436)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~ 923 (1436)
....+............+.....++|+|++|.++.+ .+++.+|+|||+.++|||++|||||||||||||||
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~ 807 (1394)
T TIGR00956 737 DLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLN 807 (1394)
T ss_pred ccccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 000000000000000000112357999999987532 12467999999999999999999999999999999
Q ss_pred HHHCCCCCC-eeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC
Q 038815 924 VLAGRKTGG-YITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002 (1436)
Q Consensus 924 ~Lag~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~ 1002 (1436)
+|+|+.+.| +.+|+|.+||.+.. ..+++.+|||+|+|.+++.+||+|+|.|++.+|.|.+.+.+++.++++++++.++
T Consensus 808 ~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~ 886 (1394)
T TIGR00956 808 VLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE 886 (1394)
T ss_pred HHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 999997654 45699999998874 3567889999999999999999999999999998776677778889999999999
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC-cceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 038815 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1003 L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~-il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1081 (1436)
|.+++|+.+|.++. +|||||||||+||+||+.+|+ ||||||||||||+.++..|++.|++++++|+|||||+|||+..
T Consensus 887 L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 887 MESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI 965 (1394)
T ss_pred ChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Confidence 99999999997654 899999999999999999997 9999999999999999999999999998899999999999999
Q ss_pred HHHHhhh---------------------------hcCCcccCCCCCCccchhhhccccchhhhccccHHHHHhhcHHHHH
Q 038815 1082 IFESFDE---------------------------AIPGVQKIKDGCNPATWMLEVTARSQELALGVDFHNIYKLSDLYRR 1134 (1436)
Q Consensus 1082 if~~FD~---------------------------~~~g~~~~~~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~ 1134 (1436)
+++.||+ ...|.++||+++|||||+||+++.+.+.....||.+.|++|++++.
T Consensus 966 ~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~ 1045 (1394)
T TIGR00956 966 LFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQA 1045 (1394)
T ss_pred HHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHH
Confidence 9999998 1134457999999999999999865544445689999999999988
Q ss_pred HHHHHHHhcCCCCCCC---CCCCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCcCC
Q 038815 1135 NKALIEELSKPVPGSK---DIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKR 1211 (1436)
Q Consensus 1135 ~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~ 1211 (1436)
..+.++++..+..... +....++|+.|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ +
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~ 1122 (1394)
T TIGR00956 1046 VKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---S 1122 (1394)
T ss_pred HHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---C
Confidence 7766665543322111 111224689999999999999999999999999999999999999999999999986 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccC
Q 038815 1212 NRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVF-YREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIG 1290 (1436)
Q Consensus 1212 ~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf-~RE~~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g 1290 (1436)
+++++|++|++|+++++.++. +++++|.|..||.+| +||+++|+|++.+|++|++++|+|+.++++++|++|+|||+|
T Consensus 1123 ~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~G 1201 (1394)
T TIGR00956 1123 LQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVG 1201 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeeccc
Confidence 789999999999988887776 456678888888886 899999999999999999999999999999999999999999
Q ss_pred cccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhh
Q 038815 1291 FEWTAAK-------FFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWA 1363 (1436)
Q Consensus 1291 ~~~~~~~-------f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~i 1363 (1436)
|++++.+ |++|+++++++.++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+
T Consensus 1202 l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~ 1281 (1394)
T TIGR00956 1202 FYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRC 1281 (1394)
T ss_pred ccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhc
Confidence 9988766 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhCCcccccC----------CCCcHHHHHH-------------------------------hhcCCc
Q 038815 1364 NPVAWTMYGLFASQFGDVEDKME----------NGETVKQFVR-------------------------------NYFDFK 1402 (1436)
Q Consensus 1364 sp~~y~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~-------------------------------~~~g~~ 1402 (1436)
||++|+++|++.|||+|.+..|+ +|+||++|+. ..+|++
T Consensus 1282 sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~ 1361 (1394)
T TIGR00956 1282 SPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSK 1361 (1394)
T ss_pred CHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCc
Confidence 99999999999999999987772 3567765532 356888
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 038815 1403 HEFLGVVAVVVAAFAVLFGVLFAAGIKRFN 1432 (1436)
Q Consensus 1403 ~~~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1432 (1436)
+++.|+|++++++|++++ +++++++.++.
T Consensus 1362 ~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956 1362 YSGRWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred ccccccchhhhhHHHHHH-HHHHHhhheEE
Confidence 899999999999999988 77788887763
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-93 Score=893.39 Aligned_cols=554 Identities=32% Similarity=0.548 Sum_probs=483.1
Q ss_pred CCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEc
Q 038815 863 EPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITIS 941 (1436)
Q Consensus 863 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~ 941 (1436)
.+..+.|+|+++..+.+.. ..+++|+||||.++|||++|||||||||||||||+|+||..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567899999998765421 3478999999999999999999999999999999999998764 789999999
Q ss_pred CeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 942 GYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 942 g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
|++...+.+++.+|||+|+|.+.|++||+|+|.|+|.+|+|.+.+.++|+++|+++++.|||.+|+|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh---------c--
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA---------I-- 1090 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~---------~-- 1090 (1436)
||||||+||.||+.||+||||||||||||+.+|.+++++||++|++|+|||||+||||+++|++||+. .
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999991 1
Q ss_pred -----------CCcccCCCCCCccchhhhccccc-hhhhccccHHHHHhhc------HHHHHHHHHHHHhcCCCCCCCCC
Q 038815 1091 -----------PGVQKIKDGCNPATWMLEVTARS-QELALGVDFHNIYKLS------DLYRRNKALIEELSKPVPGSKDI 1152 (1436)
Q Consensus 1091 -----------~g~~~~~~~~NPAd~~l~v~~~~-~~~~~~~d~~~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1436)
.|. +||+++|||||++|+++.. ... .-.+..+.++.- +...+... .........+.
T Consensus 254 ~~~~~~~ff~~~G~-~~P~~~Npadf~l~l~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~- 327 (613)
T KOG0061|consen 254 SPRELLEFFSSLGF-PCPELENPADFLLDLLSVDSGTR-ELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSKK- 327 (613)
T ss_pred CHHHHHHHHHhCCC-CCCCcCChHHHHHHHHccCCCch-hHHhHHHHHHHhhhccccchhhhhHH---HHhhhcccccc-
Confidence 233 4999999999999998842 110 001111111111 11111100 01111001111
Q ss_pred CCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHh
Q 038815 1153 YFPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQ 1232 (1436)
Q Consensus 1153 ~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~ 1232 (1436)
.+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+.++.+.
T Consensus 328 -~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~~~f~ 403 (613)
T KOG0061|consen 328 -VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSFMTFL 403 (613)
T ss_pred -cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHHHHHH
Confidence 111127899999999999999999999999999999999999999999999976 4567789999999999999898
Q ss_pred hhhhcchhhHHhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHH
Q 038815 1233 YCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYF 1312 (1436)
Q Consensus 1233 ~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~ 1312 (1436)
.+...++.|+.||++|.||+.+|+|+.++|++|++++|+|+.++.+++|.+|+|||+|++++..+|++|++++++..+.+
T Consensus 404 ~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a 483 (613)
T KOG0061|consen 404 SMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVA 483 (613)
T ss_pred HHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccccC-C----
Q 038815 1313 TFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME-N---- 1387 (1436)
Q Consensus 1313 ~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~---- 1387 (1436)
.++|++++++.||...|..+++++...+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|. .
T Consensus 484 ~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~ 563 (613)
T KOG0061|consen 484 ESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLC 563 (613)
T ss_pred HHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997333332 1
Q ss_pred -CCcHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhccccC
Q 038815 1388 -GETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNFQN 1435 (1436)
Q Consensus 1388 -g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1435 (1436)
..+..+++ ...+++.++.|.++.++++|+++|++++++++++....+
T Consensus 564 ~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 564 CESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 12445544 568999999999999999999999999999999865544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-91 Score=888.00 Aligned_cols=542 Identities=29% Similarity=0.469 Sum_probs=479.9
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEcCeecccccccceEEEeccCCCCCCCCCH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987643 4689999999987656678889999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
+|||.|++.++.|...+.+++++.++++++.+||.+++|+.+|.++ .++|||||||||+||+||+++|++|||||||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777778888899999999999999999999864 679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCCCccchh
Q 038815 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI----------------------PGVQKIKDGCNPATWM 1106 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~~----------------------~g~~~~~~~~NPAd~~ 1106 (1436)
||+.++..+++.|++++++|+|||+++|||+.++++.||+.+ .|. +||++.|||||+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~-~~p~~~n~ad~~ 275 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGH-PCPENYNPADFY 275 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHH
Confidence 999999999999999998899999999999999999999911 122 599999999999
Q ss_pred hhccccchhhh-----ccccHHHHHhhcHHHHHHHHHHHHhcCCCC---CCCCCCCCCccCCcHHHHHHHHHHHHHHHhh
Q 038815 1107 LEVTARSQELA-----LGVDFHNIYKLSDLYRRNKALIEELSKPVP---GSKDIYFPTQYSRSFFMQFMACLWKQHWSYW 1178 (1436)
Q Consensus 1107 l~v~~~~~~~~-----~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 1178 (1436)
+|+++...+.. ...++.+.|++|+.+++..+..+....+.+ ........++|..+++.|++.|++|+++++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 355 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVL 355 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 99987543221 113466777777776655544332211111 1111112346789999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHHHhhhcCCCCC
Q 038815 1179 RNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYS 1258 (1436)
Q Consensus 1179 R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~ 1258 (1436)
|||.+..+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++....+.++.||++|+||+.+|+|+
T Consensus 356 R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~ 432 (617)
T TIGR00955 356 RDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 99999999999999999999999999986 467899999999999999999888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038815 1259 GMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYG 1338 (1436)
Q Consensus 1259 ~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~ 1338 (1436)
+.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.++++++.
T Consensus 433 ~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~ 512 (617)
T TIGR00955 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCccc-ccCCC---CcH---HHHHHhhcCCccccchhHHH
Q 038815 1339 LWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVED-KMENG---ETV---KQFVRNYFDFKHEFLGVVAV 1411 (1436)
Q Consensus 1339 ~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~-~~~~g---~~~---~~~~~~~~g~~~~~~~~~~~ 1411 (1436)
++++|+||+++.++||+||+|++|+||++|+++|++.|||++.+. +|+++ ..| ++++++.||++.++.|.+++
T Consensus 513 ~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~ 592 (617)
T TIGR00955 513 PFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLI 592 (617)
T ss_pred HHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999998764 56321 112 46677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Q 038815 1412 VVAAFAVLFGVLFAAGIKRFNFQNR 1436 (1436)
Q Consensus 1412 il~~~~~~f~~~~~~~l~~~~~~~r 1436 (1436)
++++|+++|+++++++|++....+|
T Consensus 593 il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 593 GLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999998776665
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-91 Score=881.00 Aligned_cols=557 Identities=25% Similarity=0.404 Sum_probs=465.4
Q ss_pred CceeEEeceeeeeecccc----------------hhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 864 PHSLTFDEVVYSVDMPQE----------------MKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
+..+.|.|+.|.+..... .+...+..+++.+|+|||+.++|||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999875421 0011122345789999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 038815 928 RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007 (1436)
Q Consensus 928 ~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~ 1007 (1436)
+.+++..+|+|.+||.+... ..++.+|||+|+|.+++.+||+|++.|++.++.+...+.+++.++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 87654468999999987643 33466899999999999999999999998888776566667778899999999999999
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1008 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
|+.+|+...++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+|+|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999887899999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred hhc----------------------CCcccCCCCCCccchhhhccccchhhh------c---cccHHHHHhhcHHHHHHH
Q 038815 1088 EAI----------------------PGVQKIKDGCNPATWMLEVTARSQELA------L---GVDFHNIYKLSDLYRRNK 1136 (1436)
Q Consensus 1088 ~~~----------------------~g~~~~~~~~NPAd~~l~v~~~~~~~~------~---~~d~~~~~~~s~~~~~~~ 1136 (1436)
+.+ -|. +||+++|||||++|+++...+.. . ..+..+.|+++. .++..
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 353 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKVK 353 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHHH
Confidence 911 233 59999999999999987532100 0 011233443211 11111
Q ss_pred HHHHHh--cC-CCC-----CCCCCC-CCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCC
Q 038815 1137 ALIEEL--SK-PVP-----GSKDIY-FPTQYSRSFFMQFMACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1207 (1436)
Q Consensus 1137 ~~~~~~--~~-~~~-----~~~~~~-~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~ 1207 (1436)
+.++.. .. ... ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~- 431 (659)
T PLN03211 354 AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD- 431 (659)
T ss_pred HHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 111111 01 000 001000 11235678999999999999988 99999999999999999999999999984
Q ss_pred CcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheec
Q 038815 1208 KVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYA 1287 (1436)
Q Consensus 1208 ~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~ 1287 (1436)
..+++++.|++|+++++.++.+++.+++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+||
T Consensus 432 ----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~ 507 (659)
T PLN03211 432 ----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYW 507 (659)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 4679999999999999989888888889999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhchHH
Q 038815 1288 MIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVA 1367 (1436)
Q Consensus 1288 ~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~ 1367 (1436)
|+||++++.+||+|+++++++.++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++|+||++
T Consensus 508 m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~ 585 (659)
T PLN03211 508 MAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTF 585 (659)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred HHHHHHHHHhhCCccc-----ccCCC-----CcHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 038815 1368 WTMYGLFASQFGDVED-----KMENG-----ETVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNF 1433 (1436)
Q Consensus 1368 y~~~~l~~~~~~~~~~-----~~~~g-----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1433 (1436)
|+++|++.|||++.+. .|+.. ..| .++. ..++++...|.++++|++|+++|+++++++|+++||
T Consensus 586 y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 586 YSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999987542 45311 112 2222 233445578999999999999999999999999886
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-88 Score=917.48 Aligned_cols=569 Identities=23% Similarity=0.370 Sum_probs=489.1
Q ss_pred ccCCCceeEEeceeeeeecccc-------------hh-h-----cccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHH
Q 038815 860 LPFEPHSLTFDEVVYSVDMPQE-------------MK-L-----QGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 920 (1436)
Q Consensus 860 ~~~~~~~l~~~~~~~~~~~~~~-------------~~-~-----~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTT 920 (1436)
.|.....+.|+|++........ .. . .+.+..++.+|+|||+.++|||++||+|||||||||
T Consensus 23 ~~~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKST 102 (1394)
T TIGR00956 23 YKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCST 102 (1394)
T ss_pred CCCCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 3445678999999876632110 00 0 011224477999999999999999999999999999
Q ss_pred HHHHHHCCCCC--CeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC----CCCHHHHHH
Q 038815 921 LMDVLAGRKTG--GYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP----EVDSETRKM 992 (1436)
Q Consensus 921 Ll~~Lag~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~----~~~~~~~~~ 992 (1436)
|||+|+|+..+ .+.+|+|.+||.+... ..+++.++||+|+|.|++.+||+|+|.|++.+|.|. ..+.+++.+
T Consensus 103 LLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 182 (1394)
T TIGR00956 103 LLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAK 182 (1394)
T ss_pred HHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence 99999998632 2468999999987642 235667999999999999999999999999888653 234444433
Q ss_pred H-HHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 038815 993 F-IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRT 1070 (1436)
Q Consensus 993 ~-v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~t 1070 (1436)
. ++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|
T Consensus 183 ~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT 262 (1394)
T ss_pred HHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCE
Confidence 3 57799999999999999999889999999999999999999999999999999999999999999999999874 999
Q ss_pred EEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCCCccchhhhccccchhh----------hc
Q 038815 1071 VVCTIHQPSIDIFESFDEAI----------------------PGVQKIKDGCNPATWMLEVTARSQEL----------AL 1118 (1436)
Q Consensus 1071 vi~t~Hqps~~if~~FD~~~----------------------~g~~~~~~~~NPAd~~l~v~~~~~~~----------~~ 1118 (1436)
||+++|||+.++++.||+.+ .|. +||+++|||||++|+++..... ..
T Consensus 263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~ 341 (1394)
T TIGR00956 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRT 341 (1394)
T ss_pred EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHHHhccChhhhhccccccccCCCC
Confidence 99999999999999999911 233 5999999999999998754211 12
Q ss_pred cccHHHHHhhcHHHHHHHHHHHHhcCCC---------------CCCCCCCCCCccCCcHHHHHHHHHHHHHHHhhcChhH
Q 038815 1119 GVDFHNIYKLSDLYRRNKALIEELSKPV---------------PGSKDIYFPTQYSRSFFMQFMACLWKQHWSYWRNPPY 1183 (1436)
Q Consensus 1119 ~~d~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~ 1183 (1436)
..+|++.|++|+.|++..+.+++..... ..++.....+.|..|+|+|+++|++|+++++||||.+
T Consensus 342 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~ 421 (1394)
T TIGR00956 342 PQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSF 421 (1394)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 3479999999999887776654422110 0011122334688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHHHhhhcCCCCChHHHH
Q 038815 1184 NAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREKGAGMYSGMPYA 1263 (1436)
Q Consensus 1184 ~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~RE~~~~~Y~~~~y~ 1263 (1436)
+.+|+++++++|+++|++||++++ ++++++++.|++|+++++.++.++..+ +.+..||+||+|||.+++|++++|+
T Consensus 422 ~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~ 497 (1394)
T TIGR00956 422 TLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADA 497 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHH
Confidence 999999999999999999999986 467899999999999999999887665 4566799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 038815 1264 FAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIVSTLFYGLWNVF 1343 (1436)
Q Consensus 1264 la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf 1343 (1436)
+|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++||..+|+.+++++++++++|
T Consensus 498 la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf 577 (1394)
T TIGR00956 498 IASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIY 577 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccccC----C---------------------C---CcHHHHH
Q 038815 1344 SGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME----N---------------------G---ETVKQFV 1395 (1436)
Q Consensus 1344 ~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~----~---------------------g---~~~~~~~ 1395 (1436)
+||++|+++||+||+|++|+||++|+++|++.|||++.+.+|. . | .++.+|+
T Consensus 578 ~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L 657 (1394)
T TIGR00956 578 TGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYL 657 (1394)
T ss_pred cccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHH
Confidence 9999999999999999999999999999999999998777662 1 1 1457899
Q ss_pred HhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 038815 1396 RNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNF 1433 (1436)
Q Consensus 1396 ~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1433 (1436)
...||++++++|+|++|+++|+++|+++++++++++++
T Consensus 658 ~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 658 KLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-87 Score=898.58 Aligned_cols=570 Identities=23% Similarity=0.362 Sum_probs=479.4
Q ss_pred cCCCceeEEeceeeeeecccc------h-----------h-hcc---cccCceEEeeceEeeEeCCcEEEEEcCCCCcHH
Q 038815 861 PFEPHSLTFDEVVYSVDMPQE------M-----------K-LQG---VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 919 (1436)
Q Consensus 861 ~~~~~~l~~~~~~~~~~~~~~------~-----------~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKT 919 (1436)
+.....+.|+|+++..+.... + . ..+ .++.++.+|+||||.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 344678999999987762111 0 0 001 122357899999999999999999999999999
Q ss_pred HHHHHHHCCCCC-CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCC-------CCHHHH-
Q 038815 920 TLMDVLAGRKTG-GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE-------VDSETR- 990 (1436)
Q Consensus 920 TLl~~Lag~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~- 990 (1436)
|||++|+|+.++ ..++|+|.+||.+......++.++||+|+|.|++.+||+|+|.|+++++.+.. ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 999999998654 24689999999876544446789999999999999999999999988764321 111111
Q ss_pred -----------------------HHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 991 -----------------------KMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 991 -----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 124678999999999999999999899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCCCccc
Q 038815 1048 GLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDEAI----------------------PGVQKIKDGCNPAT 1104 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~~~----------------------~g~~~~~~~~NPAd 1104 (1436)
|||+.++..+++.|+++++ .|+|||+++|||+.+++++||+.+ -|. +||+++||||
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf-~cP~~~n~AD 444 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGF-KCPERKGTAD 444 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCC-CCCCCCChHH
Confidence 9999999999999999987 589999999999999999999911 233 6999999999
Q ss_pred hhhhccccchh-h-----------hccccHHHHHhhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCcHHHHHHHHHHH
Q 038815 1105 WMLEVTARSQE-L-----------ALGVDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMACLWK 1172 (1436)
Q Consensus 1105 ~~l~v~~~~~~-~-----------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 1172 (1436)
|++|+++.... . ....++++.|++|+.+++..++++.........+.....+.|..|++.|++.|++|
T Consensus 445 Fl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R 524 (1470)
T PLN03140 445 FLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDK 524 (1470)
T ss_pred HHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHH
Confidence 99999986432 1 11246899999999888766544321111011111112346899999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHHHhhh
Q 038815 1173 QHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVFYREK 1252 (1436)
Q Consensus 1173 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~RE~ 1252 (1436)
+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++|+++++..+.++.+ ++.+..||+||+|||
T Consensus 525 ~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker 603 (1470)
T PLN03140 525 EWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQR 603 (1470)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhh
Confidence 9999999999999999999999999999999998765455667788999999988888776655 477889999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 038815 1253 GAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHIAAIV 1332 (1436)
Q Consensus 1253 ~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1332 (1436)
.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..+|+.+
T Consensus 604 ~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 683 (1470)
T PLN03140 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTG 683 (1470)
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccc---cC-CCCcHHHHHHhhcCCccc--cc
Q 038815 1333 STLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDK---ME-NGETVKQFVRNYFDFKHE--FL 1406 (1436)
Q Consensus 1333 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~---~~-~g~~~~~~~~~~~g~~~~--~~ 1406 (1436)
++++++++++|+||++|+++||+||+|++|+||++|+++|+++|||.+.... |. ...+.++.+++.+|+..+ +.
T Consensus 684 ~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~ 763 (1470)
T PLN03140 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWY 763 (1470)
T ss_pred HHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccch
Confidence 9999999999999999999999999999999999999999999999765432 21 123334444478999865 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 038815 1407 GVVAVVVAAFAVLFGVLFAAGIKRFN 1432 (1436)
Q Consensus 1407 ~~~~~il~~~~~~f~~~~~~~l~~~~ 1432 (1436)
|+++++|++|+++|++++++++++++
T Consensus 764 w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 764 WIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-82 Score=791.92 Aligned_cols=541 Identities=25% Similarity=0.441 Sum_probs=479.3
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEcCeecccccccceEEEeccCCCCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITISGYLKKQETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
.+.++|+|+||.++||+++.++||+||||||||++|+|..+.- ...|+|.+||++.+...-++.++|+.|+|+|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3468999999999999999999999999999999999976532 235799999998765444789999999999999999
Q ss_pred HHHHHHHhhhhcCCCC----CCHHHHHH-HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 969 VYESLLYSAWLRLPPE----VDSETRKM-FIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~----~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
|+|+|.|+++++.|.. .++.++.. .+|.+++.+||++|+||+||++.+||+||||||||+||..++++|+++|+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 22333222 678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCC
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEAI----------------------PGVQKIKDGC 1100 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~~----------------------~g~~~~~~~~ 1100 (1436)
|+|+|||+.++.++++.||++++. +.|+++++|||+.++|++||+.+ -|. +||+..
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf-~cP~r~ 364 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGF-KCPPRK 364 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCc-cCCCcc
Confidence 999999999999999999999974 89999999999999999999921 122 699999
Q ss_pred Cccchhhhccccchhhh-----------cc-ccHHHHHhhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCcHHHHHHH
Q 038815 1101 NPATWMLEVTARSQELA-----------LG-VDFHNIYKLSDLYRRNKALIEELSKPVPGSKDIYFPTQYSRSFFMQFMA 1168 (1436)
Q Consensus 1101 NPAd~~l~v~~~~~~~~-----------~~-~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~ 1168 (1436)
++|||+.||++...+.+ .. .++++.|.+|+.|++....++.-......++.....++|..|+|.|++.
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~ 444 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKA 444 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHH
Confidence 99999999998322211 11 5799999999999987654433221222233334456899999999999
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCcCChhhHHHHHHHHHHHHHHHHHhhhhhcchhhHHhhHHH
Q 038815 1169 CLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKVKRNRDLFNAMGSMYTAVFFVGAQYCSSVQPVVAVERAVF 1248 (1436)
Q Consensus 1169 l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf 1248 (1436)
|+.|.++.+.||..|...++++.+++|+++|++|++... ++..+.+.+.|++||++++..++.+..+ +...+.|+||
T Consensus 445 c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~ 521 (1391)
T KOG0065|consen 445 CTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchH
Confidence 999999999999999999999999999999999999983 4667899999999999999998887776 5566799999
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 038815 1249 YREKGAGMYSGMPYAFAQVMIEIPYLFVLSVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMTVAMTPNHHI 1328 (1436)
Q Consensus 1249 ~RE~~~~~Y~~~~y~la~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~ 1328 (1436)
+|||...+|++++|.++..+.++|..++.+++|.+|+||++||.+++++||.|+++++++..+++++.+++++++++...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhchHHHHHHHHHHHhhCCcccccC-CC-------------------
Q 038815 1329 AAIVSTLFYGLWNVFSGFVIPRPRIPEWWRWYYWANPVAWTMYGLFASQFGDVEDKME-NG------------------- 1388 (1436)
Q Consensus 1329 A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~g------------------- 1388 (1436)
|+.++++.+.+..+++||+||.++||+||+|++|+||+.|+++++++|||++.+..|. .|
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999887773 11
Q ss_pred --C---cHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 038815 1389 --E---TVKQFVRNYFDFKHEFLGVVAVVVAAFAVLFGVLFAAGIKRFNFQ 1434 (1436)
Q Consensus 1389 --~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1434 (1436)
. .+.+|++..|++++.|.|++++|++||.++|.+++.+++.|+|.-
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1 246788888999999999999999999999999999999999853
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=779.31 Aligned_cols=564 Identities=26% Similarity=0.426 Sum_probs=479.0
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCC
Q 038815 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 175 ~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 254 (1436)
+.+++||+|||++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998875556899999999876544567899999999999999
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc-
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM- 333 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~- 333 (1436)
||+|||.|+++++.+.. ..+. +.+..++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VTKK------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CCHH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987763221 1111 123357889999999999999999864
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
.++|||||||||+||+++ ++||||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999997766 5999999999999999999999999876 4889999999999999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhhHHHHHHhcC
Q 038815 409 GLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRT 488 (1436)
Q Consensus 409 G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~~~l~~ 488 (1436)
|+++|+|+++++.+||+++||+||++.|++||+.++++..+.... . ...+.+++.+.|++++..++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998765432110 0 112345677778777666555444332
Q ss_pred CCCCCCC---CcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCccCCcchh
Q 038815 489 PFDKSKS---HPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIY 565 (1436)
Q Consensus 489 ~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~~~~~~~ 565 (1436)
...+... ........++..+++.|+..+++|.++..+||+..+..++++.+++|+++|++|++.+. + ..+.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~--~-~~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL--T-QKGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--C-HHHHHHH
Confidence 1111100 00111234577899999999999999999999999999999999999999999996543 2 2345667
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccccHHHH
Q 038815 566 IGASFFAVMMTMFNGM-SDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRF 644 (1436)
Q Consensus 566 ~g~lff~~l~~~~~~~-~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 644 (1436)
.|++|+.++..++.++ ..+..+..+|++|+|||..++|++++|.+++.+.++|+.++.+++|++++|||+|+.+++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8999999888888765 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHHHHHhh
Q 038815 645 FKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEF 724 (1436)
Q Consensus 645 f~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al~~nef 724 (1436)
|.|++++++...++.+++.++++++++..+|..+++++++++++++||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038815 725 LGHSW-RKFTTN---SNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFL 782 (1436)
Q Consensus 725 ~~~~~-~~~~~~---~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~ 782 (1436)
.+..+ .|...+ .+...|+++|+.+|+..+ ++|.+++++++++++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776 453221 133468999999988653 568999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-79 Score=770.82 Aligned_cols=604 Identities=21% Similarity=0.335 Sum_probs=468.6
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhhhhhccccccccccccccccccceeeeceEEEEeCCeEE
Q 038815 115 LPEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPTRKKHLTILKDVSGIIRPGSMT 194 (1436)
Q Consensus 115 ~p~~~v~~~~l~v~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 194 (1436)
.+.++++|+|++..+...-...+... +...+. . -...+++.++++++++|+|||++++|||++
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~------------~-~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~ 97 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILG------------H-KPKISDETRQIQERTILNGVTGMASPGEIL 97 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccc------------c-ccccccccccCCCCeeeeCCEEEEECCEEE
Confidence 45789999999999754310111111 111111 0 001122334455678999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccc
Q 038815 195 LLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFD 274 (1436)
Q Consensus 195 ~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 274 (1436)
+|+|||||||||||++|+|+++++ ..+|+|.+||+++... .++.++||+|+|.+++.+||+|||.|++.++....
T Consensus 98 aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~--- 172 (659)
T PLN03211 98 AVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS--- 172 (659)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC---
Confidence 999999999999999999998774 3589999999987532 23568999999999999999999999876542110
Q ss_pred hhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh---
Q 038815 275 MLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL--- 351 (1436)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~--- 351 (1436)
.++ ++....++++++.+||++++||.+|++..++|||||||||+||+++
T Consensus 173 ----~~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 173 ----LTK------------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ----CCH------------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 000 1122346789999999999999999999999999999999997666
Q ss_pred --hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChHHHHHHHHhcCC
Q 038815 352 --ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGF 429 (1436)
Q Consensus 352 --vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf 429 (1436)
+|+|||||+|||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~ 303 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCC
Confidence 5999999999999999999999999876 5789999999988889999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhhHHHHHHhcC---CCCCCC-----CCcc-cc
Q 038815 430 KCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRT---PFDKSK-----SHPA-AL 500 (1436)
Q Consensus 430 ~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~ 500 (1436)
+||++.|+|||+.++++...+.+.....+.+ ...+++.+.|++.. .++..+.... +....+ ..+. ..
T Consensus 304 ~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (659)
T PLN03211 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRS 379 (659)
T ss_pred CCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhccccccccc
Confidence 9999999999999998764321100000111 11233445554321 1111111100 000000 0000 00
Q ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCccCCcchhhHHHHHHHHHHHH-H
Q 038815 501 SMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAVMMTMF-N 579 (1436)
Q Consensus 501 ~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~~~~~~~~g~lff~~l~~~~-~ 579 (1436)
....+..+++.|+..+++|+++. +|+......|+++.+++|+++|++|++.+ ..+.+.+.|++||.+++.++ .
T Consensus 380 ~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~ 453 (659)
T PLN03211 380 SDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFP 453 (659)
T ss_pred CCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 11234568999999999999888 78887778999999999999999999653 23466788999998777554 5
Q ss_pred HHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHHHHHHHHH
Q 038815 580 GMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQYLLLLFVNQMAT 659 (1436)
Q Consensus 580 ~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~ 659 (1436)
.++.+..+..+|++|+|||..++|++++|++|+++.++|+.++.+++|++++|||+|+.+++++||.|++++++..+++.
T Consensus 454 ~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~ 533 (659)
T PLN03211 454 SFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQ 533 (659)
T ss_pred HHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHHHHHhhcCCc-----cccccC
Q 038815 660 ALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHS-----WRKFTT 734 (1436)
Q Consensus 660 ~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al~~nef~~~~-----~~~~~~ 734 (1436)
+++.+++++++++.+|+.+++++++++++|+||+++ +||+||+|++|+||+.|++++++.|||.+.+ ..|..+
T Consensus 534 s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~ 611 (659)
T PLN03211 534 GLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLP 611 (659)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCc
Confidence 999999999999999999999999999999999997 7999999999999999999999999997643 244322
Q ss_pred CCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038815 735 NSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLN 783 (1436)
Q Consensus 735 ~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~ 783 (1436)
......+..++....+. ....|.+++++++++++|.++.+++|++.+
T Consensus 612 ~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 612 HGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11000111122222222 234788999999999999999999998654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=760.63 Aligned_cols=557 Identities=32% Similarity=0.512 Sum_probs=472.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
.+++|+||||.++|||++|||||+||||||||++|+|+..++.+++|+|++||++.+....++.+|||.|+|.++|++||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 46799999999999999999999999999999999999988677899999999887776778899999999999999999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+|||.|+|+++-+.+ +++ ++.+.+++.+++.|||.+|+||++|+...||
T Consensus 122 ~EtL~f~A~lrlp~~-------~~~------------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg 170 (613)
T KOG0061|consen 122 RETLRFSALLRLPSS-------LSK------------------------EEKRERVEEVISELGLEKCADTLIGNPGIRG 170 (613)
T ss_pred HHHHHHHHHhcCCCC-------CCH------------------------HHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence 999999999885431 122 2345678999999999999999999998999
Q ss_pred CCHHHHHHHhhh-----hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsia-----~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
+||||||||+|| .|.+||+||||||||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|++
T Consensus 171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence 999999999996 56679999999999999999999999999987 999999999999999999999999999999
Q ss_pred EEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChh--hhhhHhhhccccccccCHHHHHHHHHhchhhHHHHHHhcCC
Q 038815 412 VYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRK--DQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTP 489 (1436)
Q Consensus 412 v~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~--~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~~~l~~~ 489 (1436)
+|+|+++++.+||++.|++||++.|++||+.++.+.. .+..... .......+.++..+...+........
T Consensus 250 vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (613)
T KOG0061|consen 250 VYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKS 321 (613)
T ss_pred EEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhh
Confidence 9999999999999999999999999999999987742 1110000 00011111111000000000000000
Q ss_pred CCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCccCCcchhhHHH
Q 038815 490 FDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGAS 569 (1436)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~~~~~~~~g~l 569 (1436)
..... + .......++|.|+..+++|.+..++|++..+..|..+.+.+++++|.+|++..... .+...+.|++
T Consensus 322 ~~~~~--~---~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~---~~~~~~~g~~ 393 (613)
T KOG0061|consen 322 LSTSK--K---VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA---KGIQNRLGLF 393 (613)
T ss_pred ccccc--c---cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHH
Confidence 00000 0 00111678999999999999999999999999999999999999999999763222 2344678888
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccccHHHHHHHH
Q 038815 570 FFAVMMTMFNGMS-DISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDPNVGRFFKQY 648 (1436)
Q Consensus 570 ff~~l~~~~~~~~-~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 648 (1436)
|+.+.+..+..+. .++.+..++++|.||+..+.|+.++|++|+.+.++|+.++.+++|.+++|||+|+.++..+|+.+.
T Consensus 394 ~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~ 473 (613)
T KOG0061|consen 394 FFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFL 473 (613)
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 8888877676655 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHHHHHhhcCCc
Q 038815 649 LLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAIVANEFLGHS 728 (1436)
Q Consensus 649 l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al~~nef~~~~ 728 (1436)
++.++..+++.+++.+++++.++...|.++++++++.+++++||+++.+++|.||.|+.|+|+..|++|+++.|||.+..
T Consensus 474 l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~ 553 (613)
T KOG0061|consen 474 LIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGS 553 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999744
Q ss_pred cccccC--CCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038815 729 WRKFTT--NSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLN 783 (1436)
Q Consensus 729 ~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~ 783 (1436)
..|... ..+...|.++++..++...+ .|.++.++++++++|.++++++|++..
T Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 554 SRCFLSGNLCCESTGEDVLKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cccccCcCCcccccHHHHHHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455433 35567889999988886544 568999999999999999999998754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=677.41 Aligned_cols=202 Identities=27% Similarity=0.396 Sum_probs=173.6
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..+..+|+++.+.. +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|++
T Consensus 1936 ~~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKS 2002 (2272)
T ss_pred ceEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 35788898876531 12579999999999999999999999999999999999876 357999999987
Q ss_pred ccc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 945 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 945 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
... ...++.+|||+|++.+++.+||+|+|.+.+.++. .+.++.++.++++++.++|.+.+|..+ +.||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHH
Confidence 632 2345679999999999999999999998877653 233444567889999999999888875 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|+|++. ++-...|+
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDr 2139 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999888999999999974 56677888
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=644.42 Aligned_cols=755 Identities=22% Similarity=0.271 Sum_probs=402.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIG 252 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 252 (1436)
++..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.+++. +..+|.|+|+|.+|.
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~ 440 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA 440 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc
Confidence 3567999999999999999999999999999999999999998 9999999999988765 468999999997665
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.||+||+.|+. |+...+...+++.. ....--+..|++..||.||+.
T Consensus 441 -~tI~eNI~~G~-------------------------~dat~~~i~~a~k~--------ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 441 -TTIRENIRYGK-------------------------PDATREEIEEAAKA--------ANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred -ccHHHHHhcCC-------------------------CcccHHHHHHHHHH--------ccHHHHHHhhHHhhcccccCC
Confidence 69999999863 11112222222211 111122334788899999987
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+ +|||||||||+||||++ ||||||||+||+.+...+.+.|.+.. .++|+|| +.|....+-+ +|+|++|+
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~ 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVME 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEE
Confidence 76 49999999999999875 99999999999999999999998754 3677777 4455555555 99999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH--hhcChhhhhhHhhhccccccccCHHHHHHHHHhchhhHHHHHH
Q 038815 408 DGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ--EVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAE 485 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~--~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~~~~~~~ 485 (1436)
+|+|++.|.++|+... ..-.++... +.....+.+ .+ .... .++.....+.+. ....
T Consensus 562 ~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~~-~~--~~~~-----~~~~~~s~~~s~----~~~~ 619 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAEDE-EE--EESL-----KEERSRSLKSSS----SSPS 619 (1228)
T ss_pred CCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhcc-cc--ccch-----hhhhhhcccccc----cccc
Confidence 9999999999999751 112233322 211111100 00 0000 000000000000 0000
Q ss_pred hcCCCCC-------CCCC-cc-cccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-------HHHHHhhhee
Q 038815 486 LRTPFDK-------SKSH-PA-ALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLS-------TVAMVSMSLF 549 (1436)
Q Consensus 486 l~~~~~~-------~~~~-~~-~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~-------~~ali~gslf 549 (1436)
...+... .... +. .........++++.++ +.+.++.+.+...+..+ +.|++++.++
T Consensus 620 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k--------~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~ 691 (1228)
T KOG0055|consen 620 LSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFK--------LNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVL 691 (1228)
T ss_pred ccCCccccccccccccccccccccccccccccHHHHHH--------hccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 0000000 0000 00 0011112334444433 33334443333333222 2233333322
Q ss_pred eecc-CCCCccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHH
Q 038815 550 FRTK-MPKDSVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWV 628 (1436)
Q Consensus 550 ~~~~-~~~~~~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~ 628 (1436)
--.- .+.+..........++|.++.. ...+..++. .|.++..-..+...+- ...|.
T Consensus 692 ~~f~~~~~~~~~~~~~~~al~f~~l~~-----~~~i~~~~q-----------------~~~f~~~ge~Lt~R~R-~~~F~ 748 (1228)
T KOG0055|consen 692 EAFYPPDDDELKREVRAWALIFLGLGI-----VSGITNFLQ-----------------HYFFGIAGEKLTKRLR-SMMFR 748 (1228)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-----------------HHHHHHHHHHHHHHHH-HHHHH
Confidence 1111 1111111111112222222211 111111100 0111111111111100 11111
Q ss_pred hhhhhhccc-c---ccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccch
Q 038815 629 FLTYYVIGF-D---PNVGRFFKQYL-----LLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDI 699 (1436)
Q Consensus 629 ~i~Y~~~gl-~---~~~~~ff~~~l-----~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i 699 (1436)
.+++.=+++ + .+ ++....+. +--++..-...+...++++.-.+.+|+.++|-+.++.+....+++-..-+
T Consensus 749 ~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~ 827 (1228)
T KOG0055|consen 749 ALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYL 827 (1228)
T ss_pred HHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211111 1 12 33333322 11122223333444455555556666666665544443322211110000
Q ss_pred hhhHHHhHhhC---hHHHHHHHHHHHhhcCCccccccCCCccchhHHhhcccCc---ccC----CchhHHHHHHHHHHHH
Q 038815 700 NKWWIWGYWCS---PMMYAQNAIVANEFLGHSWRKFTTNSNESLGVQALKSRGF---FPH----AYWYWLGLGAVIGFLL 769 (1436)
Q Consensus 700 ~~w~~W~~~is---P~~ya~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~---~~~----~~~~w~~~g~lig~~v 769 (1436)
.. .++.-.+ --.|.-.+-+++|-... ++.... ......+++.+.- .+. ..-.|.+++.-+...+
T Consensus 828 ~~--~~~~~~~~~~~~~~~ea~~iA~eai~N-IrTV~a---l~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~ 901 (1228)
T KOG0055|consen 828 QK--KFLKGFSKDDKKAYEEASKIAIEAVSN-IRTVAA---LCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSL 901 (1228)
T ss_pred HH--HHHhhhhHHHHHHHHHHHHHHHHHHHh-HHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 00111112222221110 000000 0001111111000 000 0113444443333322
Q ss_pred H---HHHHHHHHHhhccccCCCceeeecCccccccc-ccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccchh
Q 038815 770 V---FNVGFTLSLTFLNKFEKPRAVIFDESESNEKD-NRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTET 845 (1436)
Q Consensus 770 ~---f~i~~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1436)
+ +.+.++.+...+...... +++....-.. ..+ . .......+..++.... ...
T Consensus 902 ~~~~~A~~f~~G~~Li~~g~~~----~~~~~~vf~~l~~t-------a----~~~~~~~s~~Pd~~ka---------~~A 957 (1228)
T KOG0055|consen 902 LFFVYALSFWYGARLISNGEMT----FEDVFRVFMALSFT-------A----MALGQASSYAPDISKA---------KIA 957 (1228)
T ss_pred HHHHHHHHHHHhHHHHhcCCcC----HHHHHHHHHHHHHH-------H----HHHHHHHhhCcHHHHH---------HHH
Confidence 2 223333333332211100 0000000000 000 0 0000000000000000 000
Q ss_pred hHHHhhhhh---------ccCccccCCCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCC
Q 038815 846 AVEIRNLIR---------KKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGA 916 (1436)
Q Consensus 846 ~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 916 (1436)
+.......+ ..+...|.....++|+||++.++..+ ..++|+|+|+++++|+.+||+|||||
T Consensus 958 a~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGs 1027 (1228)
T KOG0055|consen 958 AGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGS 1027 (1228)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCC
Confidence 000011100 01112233345799999999998543 46799999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHH
Q 038815 917 GKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF 993 (1436)
Q Consensus 917 GKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~ 993 (1436)
||||.+.+|-+..+ +..|.|.|||++++. ...|+.+|.|.|+|.++. -|++||+.|+ . . +.+.++
T Consensus 1028 GKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG-~---~-~vs~~e---- 1095 (1228)
T KOG0055|consen 1028 GKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG-S---E-EVSEEE---- 1095 (1228)
T ss_pred CHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc-C---C-CCCHHH----
Confidence 99999999987654 568999999988754 457889999999999986 6999999998 1 1 134333
Q ss_pred HHHHHHH-------cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 994 IEEIMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 994 v~~~l~~-------l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+.+.++. .+|.+-.||.||..|. +||||||||++|||||++||+||+|||.||.||+++.+.++++|.+. .
T Consensus 1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~ 1173 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-M 1173 (1228)
T ss_pred HHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-h
Confidence 2333333 2556667999998764 79999999999999999999999999999999999999999999986 4
Q ss_pred cCCEEEEEecCCCH
Q 038815 1067 TGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1067 ~g~tvi~t~Hqps~ 1080 (1436)
.|||.|++.|++|.
T Consensus 1174 ~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLST 1187 (1228)
T ss_pred cCCcEEEEecchhh
Confidence 59999999999874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=552.92 Aligned_cols=207 Identities=30% Similarity=0.378 Sum_probs=175.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccEEEEcCccCCCCCc-------cceEEEEcCCC-
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-LKVSGRVTYNGHNMDEFEP-------QRVAAYISQHD- 248 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 248 (1436)
..+++||||+|.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46999999999999999999999999999999999999886 4568999999997654433 26799999996
Q ss_pred -CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 249 -NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 249 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.+.|-+||.+.+.-..+.++... ..++...+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 56777999999876655543211 12234456789999999986553
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+++.|||||||||.||+|+ +|++||||++||..++.+|++.|+++.+. .++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 678999999999999997665 59999999999999999999999999865 567777799999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|+||++|++++.|+++++.
T Consensus 225 v~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 225 VVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred EEEEECCEEEEecCHHHHH
Confidence 9999999999999999885
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=624.24 Aligned_cols=202 Identities=19% Similarity=0.320 Sum_probs=166.8
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC------------
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 932 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~------------ 932 (1436)
..++|+||+|.++.. ++..+|+|+|+.|+||+++||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999988531 1246999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCH
Q 038815 933 ----------------------------------------YITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 933 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|.+||.+..+ ..+++.+|||+|++.+++ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 148999999988653 467889999999999985 799
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
+|||.|+. | +.+.+ .++++++..++.+ -.||.||..| ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATRE----DVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 2 23332 3566666666544 4588888654 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||||+||+.+++.|++.|+++. .+|+|+|+++|+++ ..+.+|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~I 1428 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKI 1428 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEE
Confidence 99999999999999999999986 35899999999984 45678873
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=575.75 Aligned_cols=447 Identities=21% Similarity=0.287 Sum_probs=328.3
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++.++++++.+|+|||++|++||+++|+||||||||||||+|+|.++|+ ..+|+|.++|+++..... ++.++||
T Consensus 9 ~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred eeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 34445555567999999999999999999999999999999999998861 129999999998765432 3569999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++......+. ... .+....++.+++.+||++.
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~ 136 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGI-------MDY------------------------DAMYLRAQKLLAQLKLDIN 136 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCC-------cCH------------------------HHHHHHHHHHHHHcCCCCC
Confidence 999989999999999998643210000 000 0012235678999999876
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+.. ++.|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+..++.++
T Consensus 137 ~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~ 209 (506)
T PRK13549 137 PATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAI 209 (506)
T ss_pred cccc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHh
Confidence 6654 457999999999998776 4999999999999999999999999864 3 44566688899999999
Q ss_pred cCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhh
Q 038815 400 FDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVG 479 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~ 479 (1436)
+|+|++|++|++++.|+.+++.. .+..+.+
T Consensus 210 ~d~v~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------ 239 (506)
T PRK13549 210 SDTICVIRDGRHIGTRPAAGMTE--------------------------------------------DDIITMM------ 239 (506)
T ss_pred cCEEEEEECCEEeeecccccCCH--------------------------------------------HHHHHHh------
Confidence 99999999999998875432100 0000000
Q ss_pred HHHHHHhcCCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCcc
Q 038815 480 QKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSV 559 (1436)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~ 559 (1436)
+ . ...
T Consensus 240 ----------------------------------------------------------------------~--~--~~~- 244 (506)
T PRK13549 240 ----------------------------------------------------------------------V--G--REL- 244 (506)
T ss_pred ----------------------------------------------------------------------h--C--cCc-
Confidence 0 0 000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccc
Q 038815 560 NDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDP 639 (1436)
Q Consensus 560 ~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~ 639 (1436)
..
T Consensus 245 ~~------------------------------------------------------------------------------ 246 (506)
T PRK13549 245 TA------------------------------------------------------------------------------ 246 (506)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHH
Q 038815 640 NVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAI 719 (1436)
Q Consensus 640 ~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al 719 (1436)
..|
T Consensus 247 ----------------------------------------------------------~~~------------------- 249 (506)
T PRK13549 247 ----------------------------------------------------------LYP------------------- 249 (506)
T ss_pred ----------------------------------------------------------ccc-------------------
Confidence 000
Q ss_pred HHHhhcCCccccccCCCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecCcccc
Q 038815 720 VANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESESN 799 (1436)
Q Consensus 720 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~~~~~~~~ 799 (1436)
.
T Consensus 250 ----------------------------------------------------------------~--------------- 250 (506)
T PRK13549 250 ----------------------------------------------------------------R--------------- 250 (506)
T ss_pred ----------------------------------------------------------------c---------------
Confidence 0
Q ss_pred cccccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEeceeeeeecc
Q 038815 800 EKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMP 879 (1436)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 879 (1436)
. . . . + ....+.++|+++.++.
T Consensus 251 -------~-----~------------------------~--------~-------------~-~~~~l~~~~l~~~~~~- 271 (506)
T PRK13549 251 -------E-----P------------------------H--------T-------------I-GEVILEVRNLTAWDPV- 271 (506)
T ss_pred -------c-----c------------------------c--------C-------------C-CCceEEEecCcccccc-
Confidence 0 0 0 0 0 0001344455443210
Q ss_pred cchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEE
Q 038815 880 QEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISG 955 (1436)
Q Consensus 880 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~g 955 (1436)
.+++.+|+|||+.|++||++||+||||||||||+++|+|...+ +.+|+|.++|.+... ...++.+|
T Consensus 272 ---------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~ 341 (506)
T PRK13549 272 ---------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIA 341 (506)
T ss_pred ---------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCE
Confidence 0123589999999999999999999999999999999997541 147999999976532 12345689
Q ss_pred EeccCC---CCCCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHH
Q 038815 956 YCEQND---IHSPLVTVYESLLYSAWLRLP--PEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTI 1029 (1436)
Q Consensus 956 yv~Q~d---~~~~~lTv~E~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~i 1029 (1436)
|++|+. .+++.+||.|++.+....... ...+.++..+.++++++.+++. +..+..+ ..|||||||||+|
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~l 416 (506)
T PRK13549 342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVL 416 (506)
T ss_pred EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHH
Confidence 999985 467889999999875321111 0112333445688999999996 4666654 5799999999999
Q ss_pred HHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1030 a~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++-+..|+
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999888999999999974 56677787
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=576.48 Aligned_cols=214 Identities=24% Similarity=0.268 Sum_probs=168.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++.++++++++|+|+|++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 9 ~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 9 AGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred eeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 34455555567999999999999999999999999999999999999887 9999999998765432 2469999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++...... .+.. .... ..+....++.+++.+||++.
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~-~~~~------------------------~~~~~~~~~~~l~~~gl~~~ 138 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKK--VCGV-NIID------------------------WREMRVRAAMMLLRVGLKVD 138 (510)
T ss_pred eecccccCCCcHHHHhhhccccccc--cccc-cccC------------------------HHHHHHHHHHHHHHcCCCCC
Confidence 9999899999999999875321000 0000 0000 00112235678999999876
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+..+ +.|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+..++.++
T Consensus 139 ~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~ 211 (510)
T PRK09700 139 LDEKV-----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRI 211 (510)
T ss_pred cccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHh
Confidence 66544 57999999999998776 5999999999999999999999999865 34 4556688999999999
Q ss_pred cCeEEEecCCeEEEecChHH
Q 038815 400 FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~ 419 (1436)
+|+|++|++|++++.|++++
T Consensus 212 ~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 212 CDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred CCEEEEEECCEEeeecchhh
Confidence 99999999999998886643
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=573.60 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=166.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++.+++.++++|+|+|++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++|+
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 8 KGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred eeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 34444555567999999999999999999999999999999999999987 9999999988754321 3469999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++........ .... .+....++++++.+||++.
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~------~~~~------------------------~~~~~~~~~~l~~~~l~~~ 134 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFG------RIDW------------------------KKMYAEADKLLARLNLRFS 134 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccC------ccCH------------------------HHHHHHHHHHHHHcCCCCC
Confidence 999989999999999998643210000 0000 0112235678999999876
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+..+ ..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++.+ . +++||.++|+.+++.++
T Consensus 135 ~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 135 SDKLV-----GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEI 207 (501)
T ss_pred ccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHh
Confidence 66544 46999999999998776 4999999999999999999999999864 3 45566688999999999
Q ss_pred cCeEEEecCCeEEEecCh
Q 038815 400 FDDIILLSDGLIVYLGPR 417 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~ 417 (1436)
||+|++|++|+++..|+.
T Consensus 208 ~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 208 CDDVTVFRDGQFIAEREV 225 (501)
T ss_pred CCEEEEEeCCEEEEecCc
Confidence 999999999999987754
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=598.33 Aligned_cols=211 Identities=24% Similarity=0.304 Sum_probs=168.6
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|++..+.- +-..+|||||+.|+|||++||+|++|||||||+++|.+..+ +.+|+|.|||.+
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 47999999876642 23579999999999999999999999999999999998776 367999999998
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG------LPG 1015 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~ 1015 (1436)
+.+ ...|+.++.+|||+.+|. -|||+||. +..+..++.+.++||..+|.+....+.+ .++
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD----------Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg 1272 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD----------PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG 1272 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCceec-CccccccC----------cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC
Confidence 754 567889999999999986 48888883 3334445667888888888765433222 134
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhhc---CC
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI---PG 1092 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~~---~g 1092 (1436)
..++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+..+ ++|||++.|.-+.- ---|+.. .|
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TV--md~DrVlVld~G 1349 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTV--MDSDRVLVLDAG 1349 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchh--hhcCeEEEeeCC
Confidence 578999999999999999999999999999999999999999999999765 89999999987642 2335521 33
Q ss_pred cccCCCCCCccc
Q 038815 1093 VQKIKDGCNPAT 1104 (1436)
Q Consensus 1093 ~~~~~~~~NPAd 1104 (1436)
+.-+...|++
T Consensus 1350 --~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1350 --RVVEFDSPAE 1359 (1381)
T ss_pred --eEeecCChHH
Confidence 3455566654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=613.90 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=163.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|+++.++. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 36999999988741 12469999999999999999999999999999999999866 457999999988
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
... ..+|+.++||||++.++.. |+||||.+.. ..+ ++.+.++++..++.+ -.|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 653 4678899999999999875 9999996531 122 234667777777654 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.+...|+++|++.. +++|||+++|+++. ...+|+
T Consensus 1372 G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~Dr 1441 (1622)
T PLN03130 1372 G-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDR 1441 (1622)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCE
Confidence 3 5899999999999999999999999999999999999999999999875 48999999999864 456898
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=566.84 Aligned_cols=203 Identities=22% Similarity=0.327 Sum_probs=167.8
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..++.++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 15 ~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 15 RSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred EeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 34455555667999999999999999999999999999999999999987 9999999988754432 2458999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.|..... + +....++.+++.+||++.
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~-------------~-------------------------~~~~~~~~~l~~~~l~~~ 133 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKR-------------Q-------------------------ASMQKMKQLLAALGCQLD 133 (510)
T ss_pred eccCccCCCCcHHHHhhcccccc-------------h-------------------------HHHHHHHHHHHHcCCCcc
Confidence 99999999999999998853100 0 011234668899999876
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+.. +..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++++ . +++||.++|+.+++.++
T Consensus 134 ~~~~-----~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~ 206 (510)
T PRK15439 134 LDSS-----AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQL 206 (510)
T ss_pred ccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHh
Confidence 6654 457999999999998776 4999999999999999999999999865 3 45566688999999999
Q ss_pred cCeEEEecCCeEEEecChHH
Q 038815 400 FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~ 419 (1436)
||+|++|++|++++.|+.++
T Consensus 207 ~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 207 ADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred CCEEEEEECCEEEEecChHH
Confidence 99999999999999987654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=568.01 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=152.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc-Cee---ccc------ccccceEEEeccCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS-GYL---KKQ------ETFTRISGYCEQND 961 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~-g~~---~~~------~~~~~~~gyv~Q~d 961 (1436)
+.+|+|+|+.|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.. ... ...++.+||++|+.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 469999999999999999999999999999999999865 347999996 532 111 12345689999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccccCCCCCCCCCHHHHHHHHHHHHHhhC
Q 038815 962 IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-----LRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1036 (1436)
Q Consensus 962 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~ 1036 (1436)
.+++.+||+|++.+...+. .+.+..++.++++++.++|.+ ..+.. +..|||||||||+||++|+.+
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcC
Confidence 8889999999998754321 122333456889999999975 34544 467999999999999999999
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1037 PSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1037 p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+..|+
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~ 497 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDR 497 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999765 899999999975 46667787
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=567.64 Aligned_cols=190 Identities=19% Similarity=0.319 Sum_probs=155.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCC---CCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQND---IHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~ 964 (1436)
+.+|+|+|+.+++||++||+|||||||||||++|+|..++ ..+|+|.++|.+... ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998642 137999999976532 12356789999995 578
Q ss_pred CCCCHHHHHHHhhh--hcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 038815 965 PLVTVYESLLYSAW--LRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~--lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~ 1041 (1436)
+.+||+|++.+... ............++.++++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 88999999987532 111011223334566889999999964 456653 5799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1042 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1042 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+|||..++..+++.|++++++|.|||+++|++. ++-+..|+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999975 46666777
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=575.02 Aligned_cols=211 Identities=21% Similarity=0.211 Sum_probs=166.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+...... . ....+...+|+|||+.|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 313 ~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 36777887665321000 0 000012469999999999999999999999999999999999865 3579999999765
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 946 KQ------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
.. ..+++.++||+|+. .+++.+||.|++.+....+. ....++..++++++++.+||. +..+.. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12456799999996 57889999999987644321 112344556788999999996 455655 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|+|||||+|||..++..|++.|++++++ |.|||+++|+++ .+.+..|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dr 533 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHR 533 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 679999999999999999999999999999999999999999999999875 899999999975 45667787
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=617.50 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=162.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++|+|+++.++. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+.
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 6999999988741 22469999999999999999999999999999999999876 4579999999886
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1015 (1436)
.+ ..+|+.++||||++.+++. |+||||.+.. +.++ +.++++++..++.+. .|+.+|..|
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 53 4578899999999999874 9999996531 1222 346677777777543 356676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1370 -~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1438 (1495)
T PLN03232 1370 -ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDK 1438 (1495)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCE
Confidence 5799999999999999999999999999999999999999999999875 4899999999984 3456898
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=565.37 Aligned_cols=187 Identities=25% Similarity=0.302 Sum_probs=154.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc------cccceEEEeccCC--CC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE------TFTRISGYCEQND--IH 963 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d--~~ 963 (1436)
+.+|+|||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... .+++.+||++|+. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 479999999765321 1345699999996 47
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
++.+||+|++.+....+.. ..+..+.++.++++++.++|. +..+.. +..|||||||||+||++|+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886543211 122334456788999999997 456655 357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||+.++..+++.|++++++ |+|||+++|++. .+-+..|+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~ 495 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQ 495 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCe
Confidence 9999999999999999999999875 899999999975 35566777
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-57 Score=563.40 Aligned_cols=187 Identities=20% Similarity=0.326 Sum_probs=153.4
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCC---CCCCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQND---IHSPL 966 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~ 966 (1436)
+++|+|+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 7999999999999999999999999999999999865 357999999976432 12345789999985 47888
Q ss_pred CCHHHHHHHhhhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 967 VTVYESLLYSAWLRL-PPE--VDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
+||.|++.+...... +.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+|
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 000 11223345678999999994 6677764 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||..+...+++.|+++++.|.|||+++|++. ++.+..|+
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 465 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADR 465 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCE
Confidence 9999999999999999999999888999999999974 45566777
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=600.96 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=163.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 46999999998752 12359999999999999999999999999999999999766 457999999998
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
... ..+|+.++||||++.+++. |+||||.... +.++ +.+.++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 654 4578899999999999975 9999995211 1222 336777888777643 36666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1419 G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~Dr 1488 (1522)
T TIGR00957 1419 G-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTR 1488 (1522)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 3 5799999999999999999999999999999999999999999999875 4899999999975 4556888
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-56 Score=552.54 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=163.3
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHDN 249 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~ 249 (1436)
+++++++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.
T Consensus 7 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 83 (491)
T PRK10982 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELN 83 (491)
T ss_pred EeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccc
Confidence 344567999999999999999999999999999999999999887 9999999998754322 356999999998
Q ss_pred CCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 250 HIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
+++.+||+||+.++... .+.. ... .+....++.+++.+||++..+..
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~--------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 131 (491)
T PRK10982 84 LVLQRSVMDNMWLGRYPTKGMF--------VDQ------------------------DKMYRDTKAIFDELDIDIDPRAK 131 (491)
T ss_pred cccCCCHHHHhhcccccccccc--------cCH------------------------HHHHHHHHHHHHHcCCCCCccCc
Confidence 89999999999875311 0000 000 00112356788999998766554
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+..|||||||||+||+++ +|+|||||+|||+.+..++.+.|+++++ . +.+|+.++|+.+++.++||+|
T Consensus 132 -----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i 204 (491)
T PRK10982 132 -----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEI 204 (491)
T ss_pred -----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEE
Confidence 457999999999998766 5999999999999999999999999864 3 445566788999999999999
Q ss_pred EEecCCeEEEecChH
Q 038815 404 ILLSDGLIVYLGPRE 418 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~ 418 (1436)
++|++|+++..|+++
T Consensus 205 ~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 205 TILRDGQWIATQPLA 219 (491)
T ss_pred EEEECCEEEeecChh
Confidence 999999999877553
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=592.31 Aligned_cols=197 Identities=24% Similarity=0.261 Sum_probs=164.8
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..+.|+||++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999998752 22459999999999999999999999999999999999876 457999999998
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
+.. ..+++.+|||||++.++.. ||||||... .+.+ ++.++++++..+|.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 4678899999999999874 999999531 1222 2347788888888654 46677764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~-p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
| .+||||||||++|||||+++ |+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+.
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrI 1514 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKI 1514 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEE
Confidence 3 58999999999999999996 89999999999999999999999999864 4899999999974 56788983
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=545.81 Aligned_cols=194 Identities=20% Similarity=0.331 Sum_probs=150.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|.... ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 367777776542 24699999999999999999999999999999999996431 1479999999754
Q ss_pred cc----ccccceEEEeccCCCCCC--CCCHHHHHHHhhhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 038815 946 KQ----ETFTRISGYCEQNDIHSP--LVTVYESLLYSAWL--RLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~----~~~~~~~gyv~Q~d~~~~--~lTv~E~l~f~a~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1016 (1436)
.. ...++.+||++|++.+.. ..|+++.+.+...- ....... .+.++.++++++.++|.+ ..+.. +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~ 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----F 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----h
Confidence 21 123467999999865543 35677766543210 1111111 223456889999999987 66765 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR-TVVCTIHQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~-tvi~t~Hqps 1079 (1436)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++|. |||+++|++.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 57999999999999999999999999999999999999999999999987764 7999999975
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=585.53 Aligned_cols=209 Identities=19% Similarity=0.216 Sum_probs=170.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+||++.++. +.+.+|+|||+.|+|||++||+|+||||||||+++|+|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999998752 12569999999999999999999999999999999999864 47999999988
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
... ..+++.++||||++.+++. ||||||.... ..+ ++.+.++++.++|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 753 4578899999999999974 9999994321 112 3457788888888543 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhhc---C
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAI---P 1091 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~~---~ 1091 (1436)
..+||||||||++|||||+++|+||+||||||+||..+...|++.|++..+ ++|||+++|+++ ....+|+.+ +
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998754 799999999974 456799833 3
Q ss_pred CcccCCCCCCccc
Q 038815 1092 GVQKIKDGCNPAT 1104 (1436)
Q Consensus 1092 g~~~~~~~~NPAd 1104 (1436)
| ++-+.-+|.+
T Consensus 1427 G--~ivE~g~p~~ 1437 (1490)
T TIGR01271 1427 S--SVKQYDSIQK 1437 (1490)
T ss_pred C--EEEEeCCHHH
Confidence 4 2344455654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=526.56 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=149.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ ++.+|+|+|+.|++||+++|+|||||||||||++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 478888887653 2469999999999999999999999999999999999765 34799999873
Q ss_pred ccccccceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 038815 946 KQETFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgG 1022 (1436)
+.+||++|+.. +.+.+||+|++.+.. ... ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~~-----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QEG-----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cCC-----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 46899999863 456789999986421 111 1134578899999994 556655 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+||++|+.+|++|+|||||+|||+.+...+++.|+++ +.|||+++|++. .+-+..|+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~ 504 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999886 459999999975 45555676
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=524.99 Aligned_cols=186 Identities=21% Similarity=0.275 Sum_probs=150.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|||+.|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 478888887652 3569999999999999999999999999999999999765 35799998542
Q ss_pred ccccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGq 1023 (1436)
..+||++|+. .+++.+||+|++.+....+.. ... ...++++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 677889999999876432211 111 123457899999964 44555 35799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||+++|++. .+-+..|+
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~ 511 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATH 511 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 48999999975 45556676
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=517.32 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=149.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 477888876542 3469999999999999999999999999999999999865 35799998542
Q ss_pred ccccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGq 1023 (1436)
..+||++|+. .+++.+||+|++.+....+. .... ...++++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999985 47788999999987643211 1111 123557899999964 45555 35799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||..+...+++.|+++ +.|||+++|++. .+-+..|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~viivsHd~~-~~~~~~d~ 509 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---AGCAVVISHDRW-FLDRIATH 509 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CCeEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999987 248999999974 45555676
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-51 Score=454.75 Aligned_cols=450 Identities=25% Similarity=0.313 Sum_probs=339.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCCCcc-------ceEEEEcC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFEPQ-------RVAAYISQ 246 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 246 (1436)
....+++||||.|++||.++|+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-....+ ..+++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 4678999999999999999999999999999999999998763 35689999999997544322 36899999
Q ss_pred CC--CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 247 HD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 247 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
++ .+.|-.|+...|.-..+++.. +++ ..++.++.++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~------------------------~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSR------------------------AAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccH------------------------HHHHHHHHHHHHHcCCCch
Confidence 97 567878888888776665421 111 1234456778999999876
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
...+ ++++.+|||||||||.||.|+ +|+-||||++||.....+|++.|+++.... +..++.++|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 678999999999999997665 599999999999999999999999987765 45666699999999999
Q ss_pred cCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchhh
Q 038815 400 FDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVG 479 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~~ 479 (1436)
+|+|+||.+|+++++|+++.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998876531 1110 000
Q ss_pred HHHHHHhcCCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCcc
Q 038815 480 QKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSV 559 (1436)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~~ 559 (1436)
+.+.+. +|...
T Consensus 255 r~Ll~a--eP~g~------------------------------------------------------------------- 265 (534)
T COG4172 255 RKLLAA--EPSGD------------------------------------------------------------------- 265 (534)
T ss_pred HHHHhc--CCCCC-------------------------------------------------------------------
Confidence 000000 00000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccc
Q 038815 560 NDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFDP 639 (1436)
Q Consensus 560 ~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~ 639 (1436)
T Consensus 266 -------------------------------------------------------------------------------- 265 (534)
T COG4172 266 -------------------------------------------------------------------------------- 265 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHHH
Q 038815 640 NVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNAI 719 (1436)
Q Consensus 640 ~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~al 719 (1436)
T Consensus 266 -------------------------------------------------------------------------------- 265 (534)
T COG4172 266 -------------------------------------------------------------------------------- 265 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCccccccCCCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecCcccc
Q 038815 720 VANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESESN 799 (1436)
Q Consensus 720 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~~~~~~~~ 799 (1436)
T Consensus 266 -------------------------------------------------------------------------------- 265 (534)
T COG4172 266 -------------------------------------------------------------------------------- 265 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEeceeeeeecc
Q 038815 800 EKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMP 879 (1436)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 879 (1436)
+ ... .+..+.-+.-+|+....+.+
T Consensus 266 -------------~----~p~---------------------------------------~~~~~~ll~~~~v~v~f~i~ 289 (534)
T COG4172 266 -------------P----PPL---------------------------------------PEDAPVLLEVEDLRVWFPIK 289 (534)
T ss_pred -------------C----CCC---------------------------------------CCCCCceEEecceEEEEecC
Confidence 0 000 00001122223333222222
Q ss_pred cchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc------cccce
Q 038815 880 QEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE------TFTRI 953 (1436)
Q Consensus 880 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~------~~~~~ 953 (1436)
... .....+...++++||+..++||.++|+|.||||||||=.+|.+... .+|+|.++|.++... ..++.
T Consensus 290 ~g~--~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~ 364 (534)
T COG4172 290 GGF--LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRR 364 (534)
T ss_pred Ccc--ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhh
Confidence 111 0001123578999999999999999999999999999999998765 349999999876532 35678
Q ss_pred EEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHH
Q 038815 954 SGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIA 1030 (1436)
Q Consensus 954 ~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia 1030 (1436)
+-.|+||+ .+.|.+||.|-+.=+.....| ..+..+|+++|.++|+.+||++- .+.. +.++|||||||++||
T Consensus 365 mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIA 438 (534)
T COG4172 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIA 438 (534)
T ss_pred ceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHH
Confidence 89999997 578999999998766555544 46788999999999999999873 2332 578999999999999
Q ss_pred HHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1031 VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1031 ~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+-+|++++||||||.||-.-+.+|+++||++.+ .|.+-++++||.. -+=.+.|+
T Consensus 439 RAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~ 496 (534)
T COG4172 439 RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHR 496 (534)
T ss_pred HHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhce
Confidence 999999999999999999999999999999999975 4999999999964 23334454
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=509.23 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=152.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. +. .|+++|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 366777765432 22 4899999999999999999999999999999999865 347999875
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
..+||++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..+..+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999874211 111 124688999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||..++..+++.|++++++ |.|||+++|++. .+...-|+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDr 523 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDR 523 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999874 899999999975 35555677
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=506.17 Aligned_cols=182 Identities=21% Similarity=0.325 Sum_probs=146.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 467788877652 3569999999999999999999999999999999999865 35799998741
Q ss_pred ccccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 038815 946 KQETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgG 1022 (1436)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 112345788999999963 556554 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|++. .+-...|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~ 496 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999987 359999999974 45566777
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=507.48 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=148.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+ |..
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-
Confidence 467788876542 3569999999999999999999999999999999999765 35799988 422
Q ss_pred ccccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGq 1023 (1436)
-.+||++|+. .+.+.+||.|++.+..... ... .....+.++++.+++. +..+..+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1489999975 5788899999998753211 011 1123567888889885 3456553 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|++. .+-...|+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~ 506 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTE 506 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999876 569999999964 34455565
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=464.82 Aligned_cols=440 Identities=23% Similarity=0.342 Sum_probs=338.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAY 243 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~y 243 (1436)
++++.|+++..++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....++ .-++.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEE
Confidence 556778889999999999999999999999999999999999999999998 99999999988765553 45889
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|.|+..+.|+|||.|||.++........ . + +....+..+..+|+.+|++.
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g---~---i------------------------d~~~m~~~A~~~l~~lg~~~ 137 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFG---L---I------------------------DRKAMRRRARELLARLGLDI 137 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCC---c---c------------------------CHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999987654322100 0 0 01112334567899999975
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..++.|++ ||+||||-|.||+|+ +++|||||+.|+...+..+++.++++.. ++..+|.++|..+|+++
T Consensus 138 ~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~ 210 (500)
T COG1129 138 DPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFE 210 (500)
T ss_pred Chhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHH
Confidence 57777775 999999999999877 5999999999999999999999999864 56777789999999999
Q ss_pred hcCeEEEecCCeEEEecCh-HHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhch
Q 038815 399 LFDDIILLSDGLIVYLGPR-ELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFH 477 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~-~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~ 477 (1436)
+||+|.||.||+.+..++. .+. +.++..+
T Consensus 211 i~DritVlRDG~~v~~~~~~~~~--------------------------------------------~~~~lv~------ 240 (500)
T COG1129 211 IADRITVLRDGRVVGTRPTAAET--------------------------------------------SEDELVR------ 240 (500)
T ss_pred hcCEEEEEeCCEEeeecccccCC--------------------------------------------CHHHHHH------
Confidence 9999999999999876542 210 0000000
Q ss_pred hhHHHHHHhcCCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCC
Q 038815 478 VGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKD 557 (1436)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~ 557 (1436)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 038815 558 SVNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGF 637 (1436)
Q Consensus 558 ~~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl 637 (1436)
.|+|
T Consensus 241 ---------------------------------------------------------------------------~MvG- 244 (500)
T COG1129 241 ---------------------------------------------------------------------------LMVG- 244 (500)
T ss_pred ---------------------------------------------------------------------------HhhC-
Confidence 0000
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHH
Q 038815 638 DPNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQN 717 (1436)
Q Consensus 638 ~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~ 717 (1436)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCccccccCCCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecCcc
Q 038815 718 AIVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESE 797 (1436)
Q Consensus 718 al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~~~~~~ 797 (1436)
+.... . | + . .
T Consensus 245 ---------r~~~~------------------~------------------------------~--~----------~-~ 254 (500)
T COG1129 245 ---------RELED------------------L------------------------------F--P----------E-P 254 (500)
T ss_pred ---------cchhh------------------h------------------------------c--c----------c-c
Confidence 00000 0 0 0 0 0
Q ss_pred cccccccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEeceeeeee
Q 038815 798 SNEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVD 877 (1436)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 877 (1436)
. . . ...+..++.++++.
T Consensus 255 -~-------~-----~-----------------------------------------------~~~~~~l~v~~l~~--- 271 (500)
T COG1129 255 -P-------E-----E-----------------------------------------------GIGEPVLEVRNLSG--- 271 (500)
T ss_pred -c-------c-----c-----------------------------------------------CCCCcEEEEecCCC---
Confidence 0 0 0 00011233333321
Q ss_pred cccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc----cccce
Q 038815 878 MPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE----TFTRI 953 (1436)
Q Consensus 878 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~----~~~~~ 953 (1436)
...++||||++++||+++|-|-=|||+|-|+++|.|... ..+|+|.+||.+.... ..+.-
T Consensus 272 --------------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 272 --------------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred --------------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcC
Confidence 114789999999999999999999999999999999544 3479999999876432 34557
Q ss_pred EEEeccC---CCCCCCCCHHHHHHHhhhhcCC-C-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHH
Q 038815 954 SGYCEQN---DIHSPLVTVYESLLYSAWLRLP-P-EVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVSGLSTEQRKRL 1027 (1436)
Q Consensus 954 ~gyv~Q~---d~~~~~lTv~E~l~f~a~lr~~-~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGqrkRl 1027 (1436)
++||+.| +-++..++|+||+.++...+.. . -.+.....+.+++..+.|++.... +.. +..||||.+|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKV 410 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKV 410 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhH
Confidence 9999987 4577889999999887332321 1 245555566789999999986432 233 467999999999
Q ss_pred HHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1028 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1028 ~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||+.|..+|+||+|||||.|+|.-+...|.++|++++++|.+||+++-+. .|+..+.|+
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DR 470 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDR 470 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCE
Confidence 999999999999999999999999999999999999999999999999875 588899999
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=471.81 Aligned_cols=215 Identities=27% Similarity=0.307 Sum_probs=163.8
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 249 (1436)
.+....+.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. ..++|++|++.
T Consensus 8 ~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~ 76 (530)
T COG0488 8 NLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPP 76 (530)
T ss_pred eeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCC
Confidence 3455567788999999999999999999999999999999999999998 999987642 35899999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChH---HH-HHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID---VF-MKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
..+..||.+.+.-+.... +++..+..... ...++++.. .+ ......++.+.+..+..++..||++..
T Consensus 77 ~~~~~tv~~~v~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 77 LDPEKTVLDYVIEGFGEL-----RELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred cCCCccHHHHHHhhhHHH-----HHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 999999999998654321 11111111111 111111111 11 112223445666778889999999876
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++.++ .||||||.||++|+++ +|+||||||+||..+..++.+.|++ ..+ ++|.++|+....-+.|
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHh
Confidence 55554 6999999999998766 5999999999999999999999986 245 5566899999999999
Q ss_pred CeEEEecCCeEEEe
Q 038815 401 DDIILLSDGLIVYL 414 (1436)
Q Consensus 401 D~vilL~~G~iv~~ 414 (1436)
++|+-|+.|++..+
T Consensus 218 t~I~~ld~g~l~~y 231 (530)
T COG0488 218 THILELDRGKLTPY 231 (530)
T ss_pred hheEEecCCceeEe
Confidence 99999999977544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=489.77 Aligned_cols=185 Identities=19% Similarity=0.249 Sum_probs=143.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++ +++.+|+|+|+.|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 477888887652 12469999999999999999999999999999999999765 35799988752
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqr 1024 (1436)
..+||++|+.. ..+++.++..+......+. .. .+.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 4456666643221111111 11 235678999999974 44544 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+||++|+.+|++|+|||||+|||..+...+++.|++. +.|||+++|++. .+-+..|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~dr 693 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDE 693 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999888765 349999999975 34455666
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=424.20 Aligned_cols=445 Identities=21% Similarity=0.304 Sum_probs=338.3
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAY 243 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~y 243 (1436)
++...++++...+++|||++|++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ .-+|+
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcE
Confidence 345667778899999999999999999999999999999999999999998 99999999998665554 35899
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|.||..+++++||.||+..+......+ + + ........++++.+.+||+-
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~-~------~------------------------~~~~~~~~i~~l~~~yGl~v 132 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGG-L------I------------------------DRRQARARIKELSERYGLPV 132 (501)
T ss_pred EeeccccccccchhhhhhhcCcccccc-c------c------------------------CHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999875321000 0 0 01123345678899999998
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..|.+|++ ||=||||||.|-+++ +|+|||||+-|-|..+.++++.|++++. .+.+||.++|-..|+.+
T Consensus 133 dp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 133 DPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMA 205 (501)
T ss_pred Cccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHH
Confidence 88877775 999999999995544 6999999999999999999999999876 34555668999999999
Q ss_pred hcCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcChhhhhhHhhhccccccccCHHHHHHHHHhchh
Q 038815 399 LFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHV 478 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~f~~s~~ 478 (1436)
.+|++.||..|+++-.-++ . ++ .+.+++++.
T Consensus 206 iaDrvTVLR~Gkvvgt~~~----------------~-------------~~--------------~t~~ela~l------ 236 (501)
T COG3845 206 IADRVTVLRRGKVVGTVDP----------------V-------------AE--------------TTEEELAEL------ 236 (501)
T ss_pred hhCeeEEEeCCeEEeeecC----------------C-------------CC--------------CCHHHHHHH------
Confidence 9999999999998643210 0 00 011111000
Q ss_pred hHHHHHHhcCCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhheeeeccCCCCc
Q 038815 479 GQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELLKANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDS 558 (1436)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~gslf~~~~~~~~~ 558 (1436)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcCCccchHhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 038815 559 VNDGGIYIGASFFAVMMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYYVIGFD 638 (1436)
Q Consensus 559 ~~~~~~~~g~lff~~l~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~ 638 (1436)
|+|
T Consensus 237 ---------------------------------------------------------------------------MvG-- 239 (501)
T COG3845 237 ---------------------------------------------------------------------------MVG-- 239 (501)
T ss_pred ---------------------------------------------------------------------------hcC--
Confidence 000
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHhHhhChHHHHHHH
Q 038815 639 PNVGRFFKQYLLLLFVNQMATALFRFIGAAGRNMIVAMSFGSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMYAQNA 718 (1436)
Q Consensus 639 ~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~i~~w~~W~~~isP~~ya~~a 718 (1436)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCccccccCCCccchhHHhhcccCcccCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecCccc
Q 038815 719 IVANEFLGHSWRKFTTNSNESLGVQALKSRGFFPHAYWYWLGLGAVIGFLLVFNVGFTLSLTFLNKFEKPRAVIFDESES 798 (1436)
Q Consensus 719 l~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~lig~~v~f~i~~~~~L~~~~~~~~~~~~~~~~~~~ 798 (1436)
+ ++. .
T Consensus 240 --------~---------------~v~-----------------------------------------------~----- 244 (501)
T COG3845 240 --------R---------------EVV-----------------------------------------------L----- 244 (501)
T ss_pred --------C---------------ccc-----------------------------------------------c-----
Confidence 0 000 0
Q ss_pred ccccccCCCcccCCCCCCCCccccCCCCCCCccccccccCCCccchhhHHHhhhhhccCccccCCCceeEEeceeeeeec
Q 038815 799 NEKDNRTGGTLQSSTSGSSSSLRTRSGESGDYIWERSSSMSSSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDM 878 (1436)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 878 (1436)
. . . .. . . .| .+.-++.+|++..-+
T Consensus 245 --------~-----~----~---~~--------------~---------------~-----~p-g~~vL~V~~L~v~~~- 268 (501)
T COG3845 245 --------R-----V----V---KP--------------P---------------S-----TP-GEVVLEVEDLSVKDR- 268 (501)
T ss_pred --------c-----c----c---cC--------------C---------------C-----CC-CCeEEEEeeeEeecC-
Confidence 0 0 0 00 0 0 00 012455566654322
Q ss_pred ccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec-c---cc-cccce
Q 038815 879 PQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK-K---QE-TFTRI 953 (1436)
Q Consensus 879 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~-~---~~-~~~~~ 953 (1436)
.....+++|||.+++||++||.|..|-|.+.|+.+|+|..+. .+|+|.++|.+. . .. ..+.-
T Consensus 269 -----------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 269 -----------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred -----------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcC
Confidence 123578999999999999999999999999999999997642 359999999885 2 22 23456
Q ss_pred EEEeccCC---CCCCCCCHHHHHHHhhhhcCC----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038815 954 SGYCEQND---IHSPLVTVYESLLYSAWLRLP----PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026 (1436)
Q Consensus 954 ~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1026 (1436)
+||||.|. -+-+.+|+.||+.+...-+.| .-.+..+.+++.+++++.++.....-. ...+.||||++||
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK 411 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQK 411 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceeh
Confidence 89999986 345788999999876432211 134566777889999999998733211 1246899999999
Q ss_pred HHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1027 l~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+-+||||..+|++|+..+||.|||..+++.|.+.|.++++.|++|++++-+. .+|+++-|+
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDr 472 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDR 472 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhhe
Confidence 9999999999999999999999999999999999999999999999999886 589999999
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=356.99 Aligned_cols=225 Identities=26% Similarity=0.398 Sum_probs=189.5
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC----CCccceEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----FEPQRVAAY 243 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~~~y 243 (1436)
++++.+.+++.++|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++.. ...|+.+|+
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCe
Confidence 445677788899999999999999999999999999999999999999998 9999999976532 123678999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|+|+.++||.+||.||+..+...- ... ..++++.....+|+.+||.+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v---------~~~------------------------~k~eA~~~A~~lL~~VGL~~ 128 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKV---------KKL------------------------SKAEAREKALELLEKVGLAD 128 (240)
T ss_pred ecccccccccchHHHHHHhhhHHH---------cCC------------------------CHHHHHHHHHHHHHHcCchh
Confidence 999999999999999999864321 011 12234455678899999998
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
.+| .++.+|||||||||+||||+ ++++|||||+|||....++.+.++++++. +.|.+.++|....+.+
T Consensus 129 ka~-----~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~ 201 (240)
T COG1126 129 KAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFARE 201 (240)
T ss_pred hhh-----hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHH
Confidence 887 56778999999999999987 49999999999999999999999999873 4555568899999999
Q ss_pred hcCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHh
Q 038815 399 LFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQE 443 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~ 443 (1436)
.+|||++|++|+++..|+++++ |..|.+....+||..
T Consensus 202 VadrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 202 VADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred hhheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999999999999876 456766667777754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=339.26 Aligned_cols=181 Identities=28% Similarity=0.364 Sum_probs=162.1
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc----cccccceEEEeccCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK----QETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~d~~~~ 965 (1436)
+...+|+|||+.|++||+++|+|||||||||||++|.+... +.+|+|.++|.... ....|+.+|+|+|+..+||
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 46789999999999999999999999999999999999876 45899999996442 2357789999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
++||.||+..+-..- ...++++-++...++|+.+||.+.+|.. +..|||||||||+|||||+.+|+++++|||
T Consensus 91 HlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGGQqQRVAIARALaM~P~vmLFDEP 163 (240)
T COG1126 91 HLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMDPKVMLFDEP 163 (240)
T ss_pred cchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcHHHHHHHHHHHHcCCCCEEeecCC
Confidence 999999999875432 2345667777889999999999999887 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
||.||+.....+.+.++++|+.|.|.||+||...
T Consensus 164 TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 9999999999999999999999999999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=366.04 Aligned_cols=223 Identities=30% Similarity=0.430 Sum_probs=194.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc-ceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-RVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~ 247 (1436)
+++.+.+++..+|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...|+ |.+|+|+|+
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCC
Confidence 44556666555999999999999999999999999999999999999998 99999999999998775 889999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|+|||+||+.|+++.++... ++++.+++++.+.|+|++..|
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~- 128 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLN- 128 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHh-
Confidence 999999999999999998875421 224456788999999998776
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+++|||||||||++|||++ ++||||+|.||...+.++...++++.+.. ++++|.++|+..|+..++|+
T Consensus 129 ----r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 129 ----RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred ----cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCE
Confidence 456789999999999999885 99999999999999999999999976654 45666689999999999999
Q ss_pred EEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~ 442 (1436)
|++|++|++...|++.++ |..|...-+|+|+-
T Consensus 204 i~Vm~~G~i~Q~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 204 IVVMNDGRIQQVGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred EEEEeCCeeeecCChHHH--------hhCccchhhhhhcC
Confidence 999999999999999998 45677777788764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=348.68 Aligned_cols=224 Identities=30% Similarity=0.458 Sum_probs=187.8
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc---cCCCCCc-cceEEEEcC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH---NMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q 246 (1436)
..+......+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||. |.+.... .|.+|||+|
T Consensus 8 ~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ 84 (345)
T COG1118 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84 (345)
T ss_pred hhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEe
Confidence 345556677999999999999999999999999999999999999998 999999999 6665444 378999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+..+|+.|||.|||.|+++++.. + |+ ..+++..++++|+.+.|++.+
T Consensus 85 ~YALF~HmtVa~NIAFGl~~~~~--~-----------------p~-------------~~~~r~rv~elL~lvqL~~la- 131 (345)
T COG1118 85 HYALFPHMTVADNIAFGLKVRKE--R-----------------PS-------------EAEIRARVEELLRLVQLEGLA- 131 (345)
T ss_pred chhhcccchHHhhhhhccccccc--C-----------------CC-------------hhhHHHHHHHHHHHhcccchh-
Confidence 99999999999999999987621 0 10 112344577889999998755
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
++++.+|||||||||++|||+ +|+||||+++||...+.++-+.|+++.+..+.|++ .++|+.+|+++++|
T Consensus 132 ----~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttv-fVTHD~eea~~lad 206 (345)
T COG1118 132 ----DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTV-FVTHDQEEALELAD 206 (345)
T ss_pred ----hcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEE-EEeCCHHHHHhhcc
Confidence 577889999999999999887 49999999999999999999999998776555555 48999999999999
Q ss_pred eEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHh
Q 038815 402 DIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQE 443 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~ 443 (1436)
+|++|++|+|...||++++. .-|...-+..|+-+
T Consensus 207 rvvvl~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 207 RVVVLNQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred eEEEecCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999999999983 44555555555543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=349.08 Aligned_cols=219 Identities=28% Similarity=0.358 Sum_probs=189.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDN 249 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 249 (1436)
+..++|+|||++|++||+.+|+|+||||||||++++.++..|+ +|+|.++|.++..... |+.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 9999999988766543 478999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
++...||.||+.|.++..+.+ ..+++.++.++|+.+||++.+|
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~--- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKAD--- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc---
Confidence 999999999999998876532 1224456788999999998776
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.++.+|||||||||+||||+ +|++|||||+|||.|+..|++.|+++.+..+ .+|+.++|-++-+-+.||+|.
T Consensus 137 --~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 137 --RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred --cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhhe
Confidence 56778999999999999887 4999999999999999999999999987665 555568899999999999999
Q ss_pred EecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhc
Q 038815 405 LLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVT 445 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~ 445 (1436)
+|++|++++.|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 34566666667766554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.40 Aligned_cols=227 Identities=29% Similarity=0.428 Sum_probs=199.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcC
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
++++.+.++...+|+|+|+.|++||++.|||||||||||||++|||...|+ +|+|.++|+++....+ +|.+++|+|
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeec
Confidence 455677788889999999999999999999999999999999999999998 9999999999998877 478999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+-.+||+|||+||+.|+++.++... ..+++.+++++|+.++|++.++
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~ 131 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD 131 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh
Confidence 9999999999999999987442110 1123456788999999998655
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+++.+|||||||||++|||++ ||||||.|+||..-+.++...++++.+.. +.+.|.++|+..|+..++|
T Consensus 132 -----R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msD 205 (352)
T COG3842 132 -----RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSD 205 (352)
T ss_pred -----hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhcc
Confidence 567789999999999999884 99999999999999999999999998776 5555668999999999999
Q ss_pred eEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhh
Q 038815 402 DIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEV 444 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v 444 (1436)
+|++|++|+|...|+++++ |..|...-+|+|+-+.
T Consensus 206 rI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 206 RIAVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred ceEEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999999999999998 5678888889998654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=338.06 Aligned_cols=214 Identities=28% Similarity=0.404 Sum_probs=186.8
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYI 244 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv 244 (1436)
++++.+++.++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.+. |+.+|||
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhh
Confidence 345667778889999999999999999999999999999999999999998 9999999999877654 6899999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
-|+-.+||++||.||+.+-..+.+.. .++++.+++++|+.+||+..
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~ 126 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS 126 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999876655421 12345568899999999752
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
...+++++.|||||+|||.++||+ +++||||+++|||-++.++-+.++++.+..++|+ |.++|+.+|++.+
T Consensus 127 ---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTi-vfVTHDidEA~kL 202 (309)
T COG1125 127 ---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTI-VFVTHDIDEALKL 202 (309)
T ss_pred ---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEE-EEEecCHHHHHhh
Confidence 234678999999999999998877 5999999999999999999999999877766555 4589999999999
Q ss_pred cCeEEEecCCeEEEecChHHHHH
Q 038815 400 FDDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~~~ 422 (1436)
+|+|++|++|+++.++++++++.
T Consensus 203 adri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 203 ADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred hceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=362.53 Aligned_cols=215 Identities=33% Similarity=0.460 Sum_probs=183.8
Q ss_pred cccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--CccceEEEEc
Q 038815 169 QILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--EPQRVAAYIS 245 (1436)
Q Consensus 169 ~~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~ 245 (1436)
+++.++++ .+.+|+|||+.|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEc
Confidence 45667777 689999999999999999999999999999999999999997 99999999887652 3457899999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++.+||+|||.|.+++++.... .....++++++.+||++..
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKA 130 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhh
Confidence 999999999999999999988864310 1123467899999999844
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+ ..+++||+||||||+||.|+ ++||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+|
T Consensus 131 ~-----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 131 N-----KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELC 204 (293)
T ss_pred C-----cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhC
Confidence 3 44668999999999997655 59999999999999999999999999874 4355666788899999999
Q ss_pred CeEEEecCCeEEEecChHHHHHHHHh
Q 038815 401 DDIILLSDGLIVYLGPRELVLDFFES 426 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~~F~~ 426 (1436)
|+|++|++|++++.|+.+++...+..
T Consensus 205 d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 205 DRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999999988766543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=337.59 Aligned_cols=186 Identities=29% Similarity=0.429 Sum_probs=160.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccc-cceEEEeccCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETF-TRISGYCEQNDIHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~d~~~ 964 (1436)
..+|++||+.|++||++||||||||||||||++|+|...+ .+|.|.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999997764 57999999975432 123 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
|.+||+||+.....+... +..++++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22256677899999999997665 44 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||.+||+.++..|++.+++++++ |+|||++||+| ++-+..|+.
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~ 212 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRV 212 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEE
Confidence 999999999999999999999865 99999999997 466678874
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=356.72 Aligned_cols=178 Identities=21% Similarity=0.264 Sum_probs=133.3
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
+..+.++|+++.++ ++..++++++|-+.+++.+|++||||||||||||++.|... +..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 34677888887654 22368999999999999999999999999999999999765 34566654322
Q ss_pred ecccccccceEEEeccC--CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 944 LKKQETFTRISGYCEQN--DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 944 ~~~~~~~~~~~gyv~Q~--d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
. .+++-.|+ +.+.-..++-|+++=. . ..+.+.+.+..++..+||..-.+.. .++.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~----~----~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK----F----PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh----c----cccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 12232332 2222234566665311 1 1134456678899999998655443 2578999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
|||+||..|+.++..|.||+|||||+|||..+...+.++|.+. ..+||.++|+-
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf 566 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF 566 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh
Confidence 9999999999999999999999999999999999999998776 56899999983
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=360.71 Aligned_cols=187 Identities=33% Similarity=0.463 Sum_probs=168.5
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
++.+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 46899999999999999999999999999999999998763 68999999987653 456788999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|+|+|.|.+.++.+.. +...++++++++.++|.+.++.. +++||+||||||+||+||+++|++|||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999999987543 44566899999999999855554 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcC-CEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIVMRTVKNTVETG-RTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g-~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+.++..+++.|++++++| +||++++|+++ ++-+.+|+
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~ 206 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDR 206 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCE
Confidence 99999999999999999987 79999999985 67777998
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=337.99 Aligned_cols=197 Identities=26% Similarity=0.356 Sum_probs=170.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++++++.+. ...+|+|||++|.+||+++|+||||||||||||+|||..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 356667766543 3679999999999999999999999999999999999876 4579999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. .-.+.+|||+|++.++|-+||+||+.|+...+. .+.+++.++++++|+.+||.+..|.. +..|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 2 234678999999999999999999999876653 45566777999999999999999987 5789999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++.+ .+.|||++||+....++ +=|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~-LsdR 200 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY-LADR 200 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh-hhCE
Confidence 99999999999999999999999999999999999999865 58999999999765443 5566
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=330.83 Aligned_cols=215 Identities=26% Similarity=0.351 Sum_probs=183.8
Q ss_pred cccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cce
Q 038815 167 SLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRV 240 (1436)
Q Consensus 167 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~ 240 (1436)
.++.+.++.+++.||+|||+.|++||+++|+||||||||||||+|.|+++|+ +|+|.++|.++..... ++.
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhh
Confidence 4556677788899999999999999999999999999999999999999998 9999999999866543 467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
+|+++|+-.+|..|||+||+.|..+-+. .+.+ ...+..+..-|+..|
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~---------~lp~------------------------~~i~~lv~~KL~~VG 133 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHT---------KLPE------------------------SLIRELVLMKLELVG 133 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhc---------cCCH------------------------HHHHHHHHHHHHhcC
Confidence 9999999999999999999999765331 1111 123344566688999
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
|... +++.++..||||+|||+++|||.+ +|+||||+||||.++..+.+.++++.+..+.|++ +++|+.++
T Consensus 134 L~~~----~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i-~VTHDl~s 208 (263)
T COG1127 134 LRGA----AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVI-MVTHDLDS 208 (263)
T ss_pred CChh----hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEE-EEECChHH
Confidence 9754 345788999999999999999884 9999999999999999999999999887665555 48899999
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~~ 422 (1436)
++..+|+|++|.+|+|+..|+++++.+
T Consensus 209 ~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 209 LLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999863
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=340.91 Aligned_cols=200 Identities=27% Similarity=0.433 Sum_probs=169.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ ++ .+|+|||+.+++|++++|+||||||||||+++|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 578889988764 12 59999999999999999999999999999999999765 4589999999876
Q ss_pred ccccccceEEEeccCC---CCCCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 946 KQETFTRISGYCEQND---IHSPLVTVYESLLYSAWLRLP--PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
....-+..+|||||.. .-+| +||+|-+..+..-+.. ...+ ++.++.++++|+.+|+.+++|..+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 5443356899999954 3344 7999999876332221 1122 2336789999999999999999875 599
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||-|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.+.||+
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~ 208 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDR 208 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCE
Confidence 99999999999999999999999999999999999999999999988999999999986 58899999
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=345.68 Aligned_cols=214 Identities=32% Similarity=0.410 Sum_probs=179.3
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc---ceEEEEc
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ---RVAAYIS 245 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~ 245 (1436)
+++.-++++++||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.++|||
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEec
Confidence 34455667889999999999999999999999999999999999999997 99999999998876653 7899999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|.....+.+||+|-+.++..-+.. ... ....+....++..|+.+|+.+.+
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~--------~~~----------------------~~~~~D~~~v~~aL~~~~~~~la 132 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLG--------LFG----------------------RPSKEDEEIVEEALELLGLEHLA 132 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccc--------ccc----------------------CCCHhHHHHHHHHHHHhCcHHHh
Confidence 999888899999999987432100 000 00011123467889999999988
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+..+ ..|||||||||.||+|++ |+||||||+||...+.++++.++++++..+ .++|++.|+.+.+..+|
T Consensus 133 ~r~~-----~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~rya 206 (258)
T COG1120 133 DRPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYA 206 (258)
T ss_pred cCcc-----cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhC
Confidence 7654 469999999999998874 999999999999999999999999987544 55555789999999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|++++|++|+++.+|+++++.
T Consensus 207 d~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 207 DHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CEEEEEECCeEEeecCcchhc
Confidence 999999999999999988775
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=334.85 Aligned_cols=197 Identities=27% Similarity=0.383 Sum_probs=169.9
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 249 (1436)
.+.+.+....+|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++ ..+...++||+|++.
T Consensus 8 ~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDA 82 (248)
T ss_pred eeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCc
Confidence 3445556688999999999999999999999999999999999999998 99999999987 345678999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
++|-+||+||+.|+...++... .+....++.+|+.+||.+..|
T Consensus 83 LlPW~Tv~~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~--- 125 (248)
T COG1116 83 LLPWLTVLDNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED--- 125 (248)
T ss_pred ccchhhHHhhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh---
Confidence 9999999999999987764211 112235678999999988765
Q ss_pred cCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+++.+|||||||||+||||++ |+||||+++||+.|+.++.+.|.++.+..+ .+++.++|+-+|+..++|+|+
T Consensus 126 --~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 126 --KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred --cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEE
Confidence 678899999999999998874 999999999999999999999999887655 555568999999999999999
Q ss_pred EecC--CeE
Q 038815 405 LLSD--GLI 411 (1436)
Q Consensus 405 lL~~--G~i 411 (1436)
+|++ |+|
T Consensus 203 vl~~~P~~i 211 (248)
T COG1116 203 VLSNRPGRI 211 (248)
T ss_pred EecCCCcce
Confidence 9998 455
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=372.81 Aligned_cols=201 Identities=23% Similarity=0.353 Sum_probs=171.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|++..++. +++.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46888888876531 23579999999999999999999999999999999999876 358999999987
Q ss_pred ccc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 945 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 945 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
... ...++.+|||+|++.+++.+||+|++.|.++++. .+.++.++.++++++.+||.+..|..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 2346779999999999999999999999877653 223344567899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||+|+|++. ++-...|+
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999985 5999999999974 45556777
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=337.07 Aligned_cols=186 Identities=27% Similarity=0.352 Sum_probs=165.4
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQNDIHS 964 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~ 964 (1436)
...+|+|||+.|++||++||+|+||||||||++++.+... +.+|+|.++|.+... ..+|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999999999999999999999999876 458999999965432 34678999999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
...||+||+.|...+.. .++++++++|.++++.+||.+.++.. +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999876653 66888999999999999999988876 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHH-Hhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFE-SFDE 1088 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~-~FD~ 1088 (1436)
|||+||+.+...|.+.|+++.++ |.||++++|++ ++.. ..|+
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm--~Vvk~ic~r 211 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDR 211 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH--HHHHHHhhh
Confidence 99999999999999999998765 99999999986 3444 3555
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=314.23 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=170.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.|+||+-.+. +.+.+|+|||+.+++||++-|+|||||||||||++|.+... +..|+|.++|++..
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 45677765443 23679999999999999999999999999999999999765 45799999998753
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. .-.+|.+|+|+||..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+-++.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 2357899999999999999999999999866543 35566778899999999999988876 56899
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+||||++.+|++|+.||||-+||+..+..||+++.++.+.|.|||+.+|+ .++.+...+
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd--~~lv~~~~~ 205 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD--LELVNRMRH 205 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc--HHHHHhccC
Confidence 999999999999999999999999999999999999999999998899999999997 445555443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=319.21 Aligned_cols=224 Identities=27% Similarity=0.399 Sum_probs=178.7
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAAY 243 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~y 243 (1436)
+..-++++++|+|||+.|+++++|+++|||||||||||++|....+ |..+++|+|.|+|+++.+. ..|+.+|+
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGM 92 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhee
Confidence 3334567889999999999999999999999999999999998754 4568899999999998543 23688999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD- 322 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~- 322 (1436)
|+|.+.-|| +|++||+.|+.+.+|... + + .+.+++..|+.-+|-
T Consensus 93 VFQkPnPFp-~SIydNVayG~r~~g~~~--~---~-----------------------------ldeiVe~sLk~AaLWd 137 (253)
T COG1117 93 VFQKPNPFP-MSIYDNVAYGLRLHGIKD--K---E-----------------------------LDEIVESSLKKAALWD 137 (253)
T ss_pred eccCCCCCC-chHHHHHHHhHHhhccch--H---H-----------------------------HHHHHHHHHHHhHhHH
Confidence 999999999 999999999999887532 1 1 112233333333332
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
...|.+ ++...+|||||+||++|||++ |||||||||+|||.++.+|-+.+.++.+ .-+||.++|...++.
T Consensus 138 EVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAa 212 (253)
T COG1117 138 EVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAA 212 (253)
T ss_pred HhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHH
Confidence 122222 234557999999999999877 5999999999999999999999999753 345555899999999
Q ss_pred hhcCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~ 442 (1436)
+..|+..++..|+++++|+++++ |..|..+.+.||+.
T Consensus 213 RvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 213 RVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred HHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 99999999999999999999987 45677777777753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.58 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=170.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++.+|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 356788887664 4789999999999999999999999999999999999766 3579999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE-VDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. +.+.+.+|||||.......+||+|.+.++..-..... ...++..+.++++|+.+|+.++++..+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 4578899999999988889999999988743221111 123334457999999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||.|||||+++|+||+||||||+||...+..+++.++++++ +|.|||+++||++. ....-|+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999999985 59999999999864 3444565
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=321.90 Aligned_cols=200 Identities=28% Similarity=0.382 Sum_probs=174.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+++++++.+. +.+.+|+|||+.|++||+++||||||+||||||+.|.|... +.+|+|.++|.+.
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 56777776543 56889999999999999999999999999999999999876 4589999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 038815 946 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 1018 (1436)
.+ ...++.+|+++|+-.+|..+||+||+.|. +|.....+++..++.+..-|+.+||... ++.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 13567899999999999999999999885 3444556777888888889999999887 5554 578
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||+++||||+.+|+|||+||||+|||+.++..+.++|+++.++ |.|++++|||-. +++..-|+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 9999999999999999999999999999999999999999999999876 999999999964 57777787
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=312.82 Aligned_cols=208 Identities=31% Similarity=0.333 Sum_probs=179.0
Q ss_pred cccccccce-eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--CccceEEEEcCC
Q 038815 171 LPTRKKHLT-ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--EPQRVAAYISQH 247 (1436)
Q Consensus 171 ~~~~~~~~~-iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~ 247 (1436)
+.++++.++ +++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+. ..++.+|.++.+
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCC
Confidence 344544444 999999999999999999999999999999999999998 99999999987543 346889999888
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
-.++..||++|||.|.+++.+.. + .+.+.+++.+.+.|+|..|.|+
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~r 129 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDR 129 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHH
Confidence 88999999999999998876532 1 1234557889999999999999
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+| ++|-|+||||+||||++ +++||||||||..++..+-+.++++.. .+.+|+..+|..+|+.++||+
T Consensus 130 Rv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 130 RVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhhe
Confidence 988 59999999999999885 999999999999999999999998643 245555678999999999999
Q ss_pred EEEecCCeEEEecChHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~ 422 (1436)
|++|++|++++.|+.+++..
T Consensus 203 vivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 203 VIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEEecCcEEEcCCHHHHHH
Confidence 99999999999999987753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=318.62 Aligned_cols=219 Identities=26% Similarity=0.341 Sum_probs=177.9
Q ss_pred ccccccc-ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceE
Q 038815 169 QILPTRK-KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVA 241 (1436)
Q Consensus 169 ~~~~~~~-~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~ 241 (1436)
+++.+.+ .++++|+|||+.|++|||++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhc
Confidence 3445555 6778999999999999999999999999999999999999987 9999999988765542 4689
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
||++|++.+.+.+||.+|+..+..-+.. .+. .-.++.+ .+.+..+-..|+.+|+
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s--~~~---------slfglfs---------------k~dk~~Al~aLervgi 137 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTS--TWR---------SLFGLFS---------------KEDKAQALDALERVGI 137 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccch--HHH---------HHhCCCC---------------HHHHHHHHHHHHHcCc
Confidence 9999999999999999999987543211 000 0001111 1112234557899999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
.+.+.+..+ .|||||+|||+|||+++ ++.|||++.||+.++.++++.|++++...+.|+|+. +|..+-+
T Consensus 138 ~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA 211 (258)
T COG3638 138 LDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLA 211 (258)
T ss_pred HHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHH
Confidence 988877665 59999999999999885 999999999999999999999999998766666664 5667889
Q ss_pred HhhcCeEEEecCCeEEEecChHHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~~ 422 (1436)
.++||||+-|++|+|+|.||++++.+
T Consensus 212 ~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 212 KKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHhhheEecCCcEEEeCChhhhhH
Confidence 99999999999999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=313.29 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=165.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~---~~~~~~G~i~i~g 942 (1436)
.++.+|++.++. .+.+|+|||+.|+++++|||||||||||||||++|.... ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 567778876653 467999999999999999999999999999999999753 3346899999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 1016 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1016 (1436)
..+-. ..+||.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++-++.|++.|+...|++ ..|.+-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 76532 357899999999999999 999999999987764332 567788999999999976 34444322 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
.+|||||+|||||||+|+-+|+||+||||||+||+.+...|.+++.++.+ .-|||++||.+.
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq 209 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ 209 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999974 789999999753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=323.55 Aligned_cols=192 Identities=30% Similarity=0.420 Sum_probs=161.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHDN 249 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 249 (1436)
..++|+|||+.|++||+++|+|||||||||||++|+|...|+ +|+|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999999997 9999999998876543 357999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
++|++||+||+...+...+.... +.....+.+++.+||++..+
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~--- 136 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL--- 136 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc---
Confidence 99999999999987765543210 12234567899999986554
Q ss_pred cCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+.++..|||||||||+||||++ ++.||||.+||+.++..+++.++++++..+.| +++++|+ +++...|||++
T Consensus 137 -~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~t-ii~VTHd-~~lA~~~dr~i 213 (226)
T COG1136 137 -KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKT-IIMVTHD-PELAKYADRVI 213 (226)
T ss_pred -cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCE-EEEEcCC-HHHHHhCCEEE
Confidence 2456689999999999999885 99999999999999999999999998754444 4446665 46778999999
Q ss_pred EecCCeE
Q 038815 405 LLSDGLI 411 (1436)
Q Consensus 405 lL~~G~i 411 (1436)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=321.63 Aligned_cols=187 Identities=28% Similarity=0.365 Sum_probs=167.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 967 (1436)
++.+++|+|++|++||+++++|||||||||+|++|.+..+ +.+|+|.+||.+... ...||.+|||-|.-.+||++
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 5689999999999999999999999999999999999876 458999999987654 45789999999999999999
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
||.||+.+--.+. ..++++.+++++|+|+++||.+ +++.. +++|||||+|||-+||||+++|+||+||||
T Consensus 91 Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 91 TVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred cHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 9999998765543 3467788899999999999985 66665 578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1046 TSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+++||+.++..+++-++++.+. |+|||++|||.. |-+.+=|+
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadr 205 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADR 205 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhce
Confidence 9999999999999999998765 999999999964 56677777
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=329.16 Aligned_cols=190 Identities=28% Similarity=0.415 Sum_probs=171.5
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe---eccc-ccccceEEEeccCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---LKKQ-ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~d~~~~ 965 (1436)
+...+++|||+.|+.||++||+|||||||||||++|||..+ +..|.|.+||. +... ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 45678999999999999999999999999999999999887 45799999998 4433 345688999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
++||.+|+.|+.+.+ ....+..+.+.+|+++|+.+.|+++++.. +..|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 33345667788999999999999999887 578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1046 TSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.++||+.-...+.+.|+++.+. |.|+|++|||+ .++++.+|+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladr 207 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADR 207 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcce
Confidence 9999999999999999999875 99999999997 589999999
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=341.66 Aligned_cols=184 Identities=29% Similarity=0.408 Sum_probs=169.0
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+|||+.|+.||+++|+|||||||||||++|||... +.+|+|.|+|.+.+. ...+|.+|+|+|+..++|++||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 9999999999999999999999999999999999876 468999999998765 3456899999999999999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.|+.+.+. .++++.+++|+++.+.|+|.++.|.. +++|||||||||+|||||+++|++++||||.|+||+.
T Consensus 96 iaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 96 IAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred hhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 999987663 45678888999999999999999987 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
....+...|+++.++ |.|+|.+|||. .|...+-|+
T Consensus 168 lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladr 203 (338)
T COG3839 168 LRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADR 203 (338)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCE
Confidence 999999999998765 89999999996 578888998
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.78 Aligned_cols=212 Identities=28% Similarity=0.423 Sum_probs=173.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
+++.-.+...++|+|||+.|++|++++|+||||||||||+|+|.|.++|. +|+|.++|.+......+..+|||||..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCccc
Confidence 34444555336999999999999999999999999999999999999998 999999999887776677899999953
Q ss_pred --CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 249 --NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 249 --~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
.+-..+||+|.+..+..-+. + .....++ +....+++.|+.+|+.+.+|
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~-g----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~ 134 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKK-G----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRD 134 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccc-c----ccccccH-------------------------HHHHHHHHHHHHcCchhhhC
Confidence 33344799999988632211 0 0001111 12345788999999999888
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
..+| .|||||+|||-||||++ |+|||||+|+|+.++..|++.|+++.+. +.+|++++|+...+.++||
T Consensus 135 r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 135 RQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred Cccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCC
Confidence 7776 59999999999999885 9999999999999999999999999775 5566668999999999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|+.|++ ++++.|+++++.
T Consensus 208 ~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 208 RVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred EEEEEcC-eeEeccChhhcc
Confidence 9999986 788999998874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=348.44 Aligned_cols=210 Identities=25% Similarity=0.386 Sum_probs=177.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.+++++..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 34555555677999999999999999999999999999999999999998 9999999998876554 3789999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..+||++||+||+.|+.+.++... .+.+..++++++.+||.+..+
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~- 131 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFED- 131 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-
Confidence 999999999999999875432110 112234678899999987655
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.++.|||||||||+|||+++ |+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++.+++|+
T Consensus 132 ----r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 132 ----RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred ----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCE
Confidence 456689999999999988775 999999999999999999999999866434 4556688999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 207 i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 207 VIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998873
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=348.67 Aligned_cols=210 Identities=28% Similarity=0.423 Sum_probs=177.4
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++.+.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 34455555677999999999999999999999999999999999999987 9999999998865444 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..+||.+||+||+.|+.+.++.. + .+.+..++++++.+||++..|.
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~L~~~~~~ 130 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMG----------R------------------------AEVAERVAELLDLVGLPGSERK 130 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhC
Confidence 99999999999999986543210 0 0122346788999999887664
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+|||+++ +|||||+++||..++.++.+.|+++.+..+ +++|.++|+..++..++|+
T Consensus 131 -----~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~tvi~vTHd~~ea~~l~d~ 204 (353)
T TIGR03265 131 -----YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-VTTIMVTHDQEEALSMADR 204 (353)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCE
Confidence 45689999999999988775 999999999999999999999999866444 4555578899999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 205 i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 205 IVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=348.99 Aligned_cols=209 Identities=26% Similarity=0.388 Sum_probs=175.8
Q ss_pred cccccc-ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 170 ILPTRK-KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 170 ~~~~~~-~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
++.+++ .++.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+
T Consensus 8 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 8 AVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred eEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 344444 4567999999999999999999999999999999999999987 9999999998866544 4689999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.++|.+||+||+.|+.+.++.. + .+....++++++.+||++..+.
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~ 130 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMP----------K------------------------AEIEERVAEAARILELEPLLDR 130 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhC
Confidence 99999999999999986543210 0 0122346778999999876654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+||||+ +|+|||||++||+.++.++.+.|+++.+.. +++++.++|+..++.+++|+
T Consensus 131 -----~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~ 204 (356)
T PRK11650 131 -----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADR 204 (356)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 4568999999999998877 499999999999999999999999986643 45566688899999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 205 i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 205 VVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EEEEeCCEEEEECCHHHHH
Confidence 9999999999999998873
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=340.38 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=176.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++-.+ +...+|+|||+.|++||+++|+|||||||||||++|||... +.+|+|.++|.+.
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 56777776443 35789999999999999999999999999999999999877 4579999999987
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...+|.+|+|+|+-.+||++||+||+.|+.+++ ....+++.+++|++++++++|.+.++.. +..||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 54 346789999999999999999999999997643 3345567888999999999999998887 468999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|++|+||||.|+||..-+..+..-|+++.++ |.|.|++|||. .|-+.+=|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDr 206 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDR 206 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccc
Confidence 9999999999999999999999999999999999999998764 99999999996 467788888
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=347.57 Aligned_cols=210 Identities=25% Similarity=0.357 Sum_probs=177.5
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--cEEEEcCccCCCCCc-cceEEEEcC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVS--GRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
++.++++...+|+|+|++|++||+++|+|||||||||||++|+|..+|+ + |+|.++|.++....+ ++.++||+|
T Consensus 10 ~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred EEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 4445555567999999999999999999999999999999999999987 7 999999998865443 467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..|
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~ 132 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMP----------K------------------------ADIAERVADALKLVGLGDAAA 132 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHhcCCCchhh
Confidence 999999999999999986543211 0 012234678899999988766
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
. .++.|||||||||+|||+++ |+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|
T Consensus 133 ~-----~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 133 H-----LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 4 45679999999999988774 9999999999999999999999998764325566668899999999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|+++..|+++++.
T Consensus 208 ri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 208 KAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=346.63 Aligned_cols=223 Identities=26% Similarity=0.351 Sum_probs=184.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcC
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
++++.++++++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEec
Confidence 344555555677999999999999999999999999999999999999987 9999999998865544 467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+||.+||+||+.|+.+.++.. + .+....++++++.+||++..+
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~ 139 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTP----------A------------------------AEITPRVMEALRMVQLEEFAQ 139 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhh
Confidence 999999999999999986533211 0 011234677899999987666
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
. ++..|||||||||+|||+++ |+||||++|||..++.++.+.|+++.+.. ++++|.++|+..++..++|
T Consensus 140 ~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laD 213 (375)
T PRK09452 140 R-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSD 213 (375)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 4 45689999999999988774 99999999999999999999999987644 4555668899999999999
Q ss_pred eEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFL 441 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl 441 (1436)
+|++|++|+++..|+++++. ..|....+++|+
T Consensus 214 ri~vl~~G~i~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 214 RIVVMRDGRIEQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEEEECCEEEEEcCHHHHH--------hCcccHHHHHhc
Confidence 99999999999999998873 345555556654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=339.88 Aligned_cols=211 Identities=27% Similarity=0.372 Sum_probs=177.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEc
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYIS 245 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 245 (1436)
++++.++++++.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEe
Confidence 345566666678999999999999999999999999999999999999998 999999999875432 246799999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++.+||+||+.|.++.++... .+....++.+++.+||.+..
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~ 132 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKA 132 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHh
Confidence 99999999999999998665443110 01122356788999998877
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++.++ +|||||||||+||+|+ +++|||||+|||+.++.++.+.|+++.+ . +++|+.++|..+++.++|
T Consensus 133 ~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 133 DAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLC 205 (306)
T ss_pred cCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhC
Confidence 76654 6999999999998777 4999999999999999999999999854 3 455666788999999999
Q ss_pred CeEEEecCCeEEEecChHHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~ 422 (1436)
|+|++|++|++++.|+++++..
T Consensus 206 d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 206 DRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999988754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=312.46 Aligned_cols=205 Identities=27% Similarity=0.312 Sum_probs=168.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++-.++ +++++|+|||+.|++||++||+|||||||||||++|.|... +.+|+|.+||...
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 467788776553 45789999999999999999999999999999999999665 4579999999643
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 038815 946 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014 (1436)
Q Consensus 946 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1014 (1436)
.. ..+++.+||++|+..+.+.+||.||+..+..-+.+ -....++.+...-+.|+.+|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 21 34678999999999999999999999865322211 11222334455678999999999887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhhhc
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDEAI 1090 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~~~ 1090 (1436)
..|||||+|||+|||+|+++|+||+.|||+++||+.++..||+.|+++.+ .|.|||++.||-.. .-+.||+.+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Rii 219 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRII 219 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhhe
Confidence 46999999999999999999999999999999999999999999999986 49999999999642 345677743
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=340.61 Aligned_cols=201 Identities=24% Similarity=0.336 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDNHI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 251 (1436)
+++|+|||++|++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 57999999999999999999999999999999999999997 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.|+....+.. + .+....+.++++.+||.+..|.
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~v~e~l~~vgL~~~~~~---- 136 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------K------------------------DEIKRKVTELLALVGLGDKHDS---- 136 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC----
Confidence 9999999999875433210 0 0112345678999999876664
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
.++.|||||||||+||||+ +|+|||||+|||+.++.++.+.|+++.+..+. +|+.++|..+.+.++||+|++|
T Consensus 137 -~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~-tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 137 -YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL-TILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEE
Confidence 4568999999999998877 49999999999999999999999998764444 4555788899999999999999
Q ss_pred cCCeEEEecChHHHH
Q 038815 407 SDGLIVYLGPRELVL 421 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~ 421 (1436)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=298.43 Aligned_cols=201 Identities=25% Similarity=0.362 Sum_probs=173.1
Q ss_pred cccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEE
Q 038815 171 LPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAY 243 (1436)
Q Consensus 171 ~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~y 243 (1436)
+.+++. ..++|+|||+.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++..... +|.+|+
T Consensus 7 V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred hhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeee
Confidence 344432 355999999999999999999999999999999999999998 9999999999865432 588999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|+||..+++..||.||++|+.+..|... .+++..+.++|+..||.+
T Consensus 84 VFQD~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~ 129 (223)
T COG2884 84 VFQDFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKH 129 (223)
T ss_pred EeeeccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccch
Confidence 9999999999999999999988775421 123456778999999998
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
.++ ..+..|||||||||+||||.| |+.||||.+||+.++.+|++.+.++.. .+|+|++.+|+..-+-.
T Consensus 130 k~~-----~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 130 KAR-----ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNR 202 (223)
T ss_pred hhh-----cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHh
Confidence 776 456789999999999998875 999999999999999999999999864 46777778899988889
Q ss_pred hcCeEEEecCCeEEEec
Q 038815 399 LFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G 415 (1436)
+-.+++.|++|+++...
T Consensus 203 ~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 203 MRHRVLALEDGRLVRDE 219 (223)
T ss_pred ccCcEEEEeCCEEEecc
Confidence 99999999999998764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=311.80 Aligned_cols=200 Identities=28% Similarity=0.325 Sum_probs=171.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC----ccceEEEEcCCC--CCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE----PQRVAAYISQHD--NHIG 252 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 252 (1436)
++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|+++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998765542 346789999997 5789
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
..||++.|.-+.+..+.+. ....+.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHH----Hhc
Confidence 9999999987665433211 111256789999998643 356
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++..|||||||||+||||++ |++|||||+||++.+.+|++.|.++.+. .+.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeee
Confidence 78899999999999998875 9999999999999999999999998765 55666779999999999999999999
Q ss_pred CCeEEEecChHHHHH
Q 038815 408 DGLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~ 422 (1436)
+|++++.++++++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=340.43 Aligned_cols=203 Identities=22% Similarity=0.324 Sum_probs=172.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHD 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 248 (1436)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 4566999999999999999999999999999999999999997 9999999999876543 46799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.++|.+||+||+.|+.+..+.. + .+....+.++++.+||++..+.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~vgL~~~~~~- 125 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWP----------E------------------------QERKEKALELLKLVGLEEYEHR- 125 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHhcCCchhhhC-
Confidence 9999999999999976543211 0 0112345778999999876654
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||+|+ ++||||||+|||+.++.++.+.++++.+..+ .+|+.++|+..++..++|+|
T Consensus 126 ----~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 126 ----YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred ----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 4557999999999998877 4999999999999999999999998865434 45556889999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|+++..|+++++.
T Consensus 201 ~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=341.38 Aligned_cols=213 Identities=28% Similarity=0.384 Sum_probs=175.5
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d 248 (1436)
++.++++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++
T Consensus 7 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~ 83 (353)
T PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHY 83 (353)
T ss_pred EEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCc
Confidence 3444455567999999999999999999999999999999999999987 9999999998865443 36799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.++|.+||+||+.|+.+....... ..+ .+....++.+++.+||++..+
T Consensus 84 ~l~p~~tv~eni~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~L~~~~~-- 131 (353)
T PRK10851 84 ALFRHMTVFDNIAFGLTVLPRRER------PNA------------------------AAIKAKVTQLLEMVQLAHLAD-- 131 (353)
T ss_pred ccCCCCcHHHHHHhhhhhcccccC------CCH------------------------HHHHHHHHHHHHHcCCchhhh--
Confidence 999999999999997643210000 000 012234677899999987665
Q ss_pred ccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+++..|||||||||+||+|++ ++|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|
T Consensus 132 ---~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 132 ---RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL-KFTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred ---CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 455689999999999988774 99999999999999999999999987643 455666889999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+++++.
T Consensus 208 ~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 208 VVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998874
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=336.20 Aligned_cols=200 Identities=27% Similarity=0.381 Sum_probs=172.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..+.++|++..+. ++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3577888876552 3579999999999999999999999999999999999865 457999999987
Q ss_pred ccc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 945 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 945 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
... ...++.+|||+|+..+++.+||+|++.|.+.++. .+..+..++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 543 2356789999999999999999999998776542 233444556889999999998888875 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+..|+
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~ 207 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDR 207 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877999999999975 67777888
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=294.27 Aligned_cols=196 Identities=23% Similarity=0.364 Sum_probs=166.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
.+++.|++||+++|+|||||||||||+.++|...|. +|+|.+||.++....| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 578899999999999999999999999999999997 9999999999877666 477999999999999999999998
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
++..- +-+ ++ .+.+..++.++...||..+.+. .+..|||||
T Consensus 94 LGl~P---~Lk------L~-------------------------a~~r~~v~~aa~~vGl~~~~~R-----LP~~LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LN-------------------------AEQREKVEAAAAQVGLAGFLKR-----LPGELSGGQ 134 (231)
T ss_pred ccCCc---ccc------cC-------------------------HHHHHHHHHHHHHhChhhHhhh-----CccccCchH
Confidence 86421 110 00 0122346778899999988764 455799999
Q ss_pred HHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecC
Q 038815 342 KRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGP 416 (1436)
Q Consensus 342 rkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~ 416 (1436)
||||++||+++ ++||||+++||+.-+.++...+.+++.+.+.|+++ ++|+.+++..++|+++++++|||.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999985 99999999999999999999999998876555555 6677789999999999999999999999
Q ss_pred hHHHH
Q 038815 417 RELVL 421 (1436)
Q Consensus 417 ~~~~~ 421 (1436)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=320.37 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=166.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++. +.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 467788776531 12469999999999999999999999999999999999765 35799999998653
Q ss_pred c---c---cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q---E---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~---~---~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. . .+++.++|++|++.+++.+||+|++.+....+. ...++..+.++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1 245679999999988899999999988754431 223344567889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+..|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 207 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHR 207 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999777999999999975 45555666
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.81 Aligned_cols=206 Identities=31% Similarity=0.390 Sum_probs=167.5
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQ 246 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q 246 (1436)
.+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q 84 (235)
T cd03261 8 KSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQ 84 (235)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEcc
Confidence 3344567999999999999999999999999999999999999987 999999998875432 2456999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.++.+.... ..+ .+....++.+++.+||++..+
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~ 131 (235)
T cd03261 85 SGALFDSLTVFENVAFPLREHTR---------LSE------------------------EEIREIVLEKLEAVGLRGAED 131 (235)
T ss_pred CcccCCCCcHHHHHHHHHhhccC---------CCH------------------------HHHHHHHHHHHHHcCCchhhc
Confidence 99999999999999886432100 000 011223566789999977655
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+. ++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|
T Consensus 132 ~~-----~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 132 LY-----PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcC
Confidence 44 457999999999998766 599999999999999999999999986533 4455567888889999999
Q ss_pred eEEEecCCeEEEecChHHH
Q 038815 402 DIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++|++|++++.|+.+++
T Consensus 206 ~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 206 RIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred EEEEEECCeEEEecCHHHH
Confidence 9999999999999988765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.15 Aligned_cols=187 Identities=26% Similarity=0.367 Sum_probs=159.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 965 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.+||++|++.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 469999999999999999999999999999999999865 357999999986532 234567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
.+||+|++.+...... ..+.++..+.++++++.++|.+..+..+ ..|||||||||+||++|+.+|++|+||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 91 SLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred CCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999988643221 1234444567889999999988776653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1046 TSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.++..+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~ 206 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADR 206 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999874 899999999986 46677787
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=341.79 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=176.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++.++..+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 23 ~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 23 RNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 34455555567999999999999999999999999999999999999987 9999999998865443 4689999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+||.+||.||+.|+.+.++.. + .+....++++++.+||.+..+
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~l~L~~~~~- 144 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLP----------K------------------------AEIASRVNEMLGLVHMQEFAK- 144 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhc-
Confidence 99999999999999976543210 0 012234677899999987655
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
..+.+|||||||||+|||+++ |||||||++||..++.++.+.|+++.+..+ .+++.++|+..++..++|+
T Consensus 145 ----~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 145 ----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred ----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCE
Confidence 456689999999999988774 999999999999999999999998866444 5556688999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 220 i~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 220 IAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred EEEEeCCEEEEEcCHHHHH
Confidence 9999999999999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=301.26 Aligned_cols=209 Identities=31% Similarity=0.423 Sum_probs=174.3
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc---ceEEEEcCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ---RVAAYISQH 247 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~ 247 (1436)
+..+...+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+. +..+..+|+
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~ 83 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQN 83 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence 334445677999999999999999999999999999999999999998 99999999999887664 556889999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..+-...||+|-+.++..-.+.+.. | .+...+++..|...++.+.+.
T Consensus 84 s~laFpFtv~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~- 130 (259)
T COG4559 84 SSLAFPFTVQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAG- 130 (259)
T ss_pred cccccceEHHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhc-
Confidence 8887778999999998654432211 0 012234566778888877654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
+..+.|||||||||.+||.+ +||||||||.||......+++..|++++. + ..|+.+.|+.+-+
T Consensus 131 ----R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLA 204 (259)
T COG4559 131 ----RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLA 204 (259)
T ss_pred ----cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHH
Confidence 34568999999999998766 38999999999999999999999999974 3 5566688999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
..++|+|++|++||++..|++++++
T Consensus 205 A~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 205 AQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHhhheeeeeeCCeEeecCCHHHhc
Confidence 9999999999999999999999875
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=341.02 Aligned_cols=209 Identities=26% Similarity=0.381 Sum_probs=173.7
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d 248 (1436)
++.++++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|+.
T Consensus 8 ~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred EEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 3444455567999999999999999999999999999999999999987 9999999998765433 46799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.|+.+.++.. + .+....++.+++.+||++..+..
T Consensus 85 ~l~~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~lgL~~~~~~~ 130 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLAGAK----------K------------------------EEINQRVNQVAEVLQLAHLLDRK 130 (369)
T ss_pred ccCCCCCHHHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCC
Confidence 9999999999999876433210 0 01122456789999998766544
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++.+++|+|
T Consensus 131 -----~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tvI~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 131 -----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKI 204 (369)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHHhCCEE
Confidence 457999999999998877 4999999999999999999999999865434 45556788889999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|+++..|+++++.
T Consensus 205 ~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 205 VVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=339.23 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=172.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|++..++ +++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 66778776542 13469999999999999999999999999999999999866 45899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|..+.+ ..+..+..+.++++++.++|.+..+..+ +.|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 3 223578999999999999999999999986543 2345556678999999999998888763 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|+++|++ .++.++.|+
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~ 204 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADR 204 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 999999999999999999999999999999999999998775 99999999997 468888898
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=333.79 Aligned_cols=203 Identities=28% Similarity=0.354 Sum_probs=170.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 253 (1436)
+++++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 3456999999999999999999999999999999999999987 999999998875421 24569999999999999
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+||+.+.++.++... .+....++.+++.+||++..++.+
T Consensus 81 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 122 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPV---- 122 (302)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCch----
Confidence 999999998765442110 001223567899999987776654
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+.|||||||||+||+|+ +|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|..+++.++||+|++|++
T Consensus 123 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 123 -GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 46999999999998777 4999999999999999999999999864 3 45566678889999999999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+.+++.+
T Consensus 200 G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 200 GRIIAEGTPEELKR 213 (302)
T ss_pred CEEEEECCHHHHHH
Confidence 99999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=337.77 Aligned_cols=199 Identities=25% Similarity=0.363 Sum_probs=173.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++..+. .+.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 367788876553 3569999999999999999999999999999999999876 4589999999876
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...+|.+|||+|+..++|++||+||+.|....+ ..+..+..+.++++++.++|.++.+.. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 42 234678999999999999999999999986543 234556677899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|+++|++. +++++.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~ 204 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADR 204 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 999999999985 78888998
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=334.59 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=170.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|++..+... .+...+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5678887665311 012469999999999999999999999999999999999876 45799999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ..++.+||++|+..+++..||+||+.|....+ ..+.++..+++.++++.+||.+..|.. ++.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 21 23568999999999999999999999875433 234455667789999999999888876 46799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. .+.+..|+
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~ 210 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999875 999999999974 56677888
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=336.35 Aligned_cols=199 Identities=24% Similarity=0.350 Sum_probs=173.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|++..+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 577888877652 3569999999999999999999999999999999999876 4579999999876
Q ss_pred ccc-cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
... ..+|.+|||+|+..++|++||+||+.|....+. .+.++++++++++++.++|.++.+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 235789999999999999999999999865442 34556677899999999999888776 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||||||+.++..+.+.|+++.++ |.|+|+++|++. +++++-|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~ 206 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 68888898
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=334.95 Aligned_cols=211 Identities=27% Similarity=0.352 Sum_probs=176.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEc
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYIS 245 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 245 (1436)
++++.++++++.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEe
Confidence 445666666778999999999999999999999999999999999999998 999999999875432 246799999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++.+||+||+.+....++.. .. +....++.+++.+||++..
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~L~~~~ 166 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMS----------TR------------------------EIEAVIPSLLEFARLESKA 166 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhh
Confidence 9999999999999999755443210 00 0112345678899998877
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++.++ .|||||||||+||+++ +++|||||+|||+.++.++.+.|+++.. . +++|+.++|..+++.++|
T Consensus 167 ~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 167 DARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLC 239 (340)
T ss_pred CCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhC
Confidence 76654 6999999999998766 5999999999999999999999999865 3 455666788999999999
Q ss_pred CeEEEecCCeEEEecChHHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~ 422 (1436)
|+|++|++|+++++|+.+++..
T Consensus 240 d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 240 DRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999998754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=309.07 Aligned_cols=223 Identities=30% Similarity=0.394 Sum_probs=187.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAY 243 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~y 243 (1436)
.+.+.++.+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++-
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhcccee
Confidence 345677888899999999999999999999999999999999999999998 99999999999887764 34678
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
-+|...+|++|||.||+..++..+.. +.. -+.. +. ...+..+.......+|+.+||.+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~---~~~--~l~~--------~~---------~~~~e~~~~e~A~~~Le~vgL~~ 141 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLG---LSG--LLGR--------PR---------ARKEEREARERARELLEFVGLGE 141 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhh---hhh--hhcc--------cc---------chhhHHHHHHHHHHHHHHcCCch
Confidence 89999999999999999998765421 000 0000 00 00011233445678999999999
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
.+|+..|+ ||+|||||+.||+|+ +|+||||.+||.+..+.++.+.++++.+. ++.+|+.+-|+..-+.+
T Consensus 142 ~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~ 215 (250)
T COG0411 142 LADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMG 215 (250)
T ss_pred hhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhh
Confidence 99988775 999999999998776 59999999999999999999999998763 55777779999999999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+||+|+||+.|+++..|+++++.
T Consensus 216 l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 216 LADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred hccEEEeccCCcCcccCCHHHHh
Confidence 99999999999999999999985
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=317.43 Aligned_cols=202 Identities=29% Similarity=0.406 Sum_probs=173.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC----CCCccceEEEEcCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----EFEPQRVAAYISQHD-NHIG 252 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 252 (1436)
..+|+|+|+.|++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 58999999999999999999999999999999999999998 899999999865 233468899999996 4567
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.-||.|.++|+....+... ++...+++.+++.+||.+..+ +
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhcc-----C
Confidence 7899999999987765421 123456788999999998765 5
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||.++ +|+|||||+|||+..+.++++.++++.+. ++.++|.++|+.+.+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 5678999999999997554 69999999999999999999999998764 44556668999999999999999999
Q ss_pred CCeEEEecChHHHHH
Q 038815 408 DGLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~ 422 (1436)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877643
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=316.97 Aligned_cols=185 Identities=31% Similarity=0.415 Sum_probs=157.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cccceEEEeccCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TFTRISGYCEQNDIHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~d~~~ 964 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 569999999999999999999999999999999999865 3579999999865321 1245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
+.+||+|++.+....+. ....+..+.++++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998765432 223334557889999999988776653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||+.++..+.+.|+++++ .|+|||+++|++.. + +..|+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 209 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADR 209 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcE
Confidence 9999999999999999999987 58999999999864 3 36666
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=315.43 Aligned_cols=186 Identities=30% Similarity=0.393 Sum_probs=157.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 569999999999999999999999999999999999765 357999999986532 22346799999998888899999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
|++.+...... ...+...+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654321 223344556889999999988777653 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.++..+++.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 200 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADR 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCE
Confidence 9999999999999976 4899999999975 45566676
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=316.72 Aligned_cols=208 Identities=37% Similarity=0.591 Sum_probs=171.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeec
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLK 945 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~ 945 (1436)
+.|+|+.+..+... ..+.+|+|+|+.+++||+++|+||||||||||+++|+|.... .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45777777653210 135799999999999999999999999999999999997641 23589999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.....++.++|++|++.+++.+||+||+.|.+....+.....+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544566789999999999999999999998765443222222223334555 89999998776655 457999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|++..++.+.+|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 9999999999999999999999999999999999999998877899999999998889999998
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=335.68 Aligned_cols=199 Identities=25% Similarity=0.338 Sum_probs=172.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeE--EEEEEcCe
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GSITISGY 943 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~--G~i~i~g~ 943 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 467788877653 34699999999999999999999999999999999998663 46 99999998
Q ss_pred eccc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 944 LKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 944 ~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
+... ...+|.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ +.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7542 224578999999999999999999999986543 2345556678999999999999888774 679999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dr 208 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADK 208 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999876 799999999975 57888888
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.68 Aligned_cols=185 Identities=25% Similarity=0.385 Sum_probs=158.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ..++.++|++|+..+++.+||+|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 569999999999999999999999999999999999765 358999999976543 34567999999998888999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
++.+....+. ....+..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 90 QLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9988655432 22334456788999999998777665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 197 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQME-LVEELCDR 197 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhE
Confidence 9999999999998877899999999975 35555666
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.04 Aligned_cols=186 Identities=30% Similarity=0.345 Sum_probs=168.3
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc--cccccceEEEeccCCCCCCCCCHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK--QETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++++||||.++.||++||+|+|||||||+|++|++... +.+|.|.++|.+.. +...++.+|.++.+--++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999876 45799999998753 345788999999888888999999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
|||.|.+.|.. ....+.+++.+++.+.|+|.++.|+.+| ++|.|+||||.|||||+++|+++++||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998863 4566677889999999999999999975 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..+...+.+.++++.+.|++||+++|..+ |+=++.|+.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrv 203 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRV 203 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheE
Confidence 99999999999999888999999999864 677788983
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=314.63 Aligned_cols=184 Identities=28% Similarity=0.389 Sum_probs=157.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|+..+++.+||+|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc--cccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999865 35799999998654 24567999999998888899999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
++.+....+. ...+...+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754432 223344567889999999988777653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.++..+++.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADR 201 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999865 4899999999985 45566676
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=315.10 Aligned_cols=207 Identities=30% Similarity=0.378 Sum_probs=168.2
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHD 248 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d 248 (1436)
+..++.++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 333444567999999999999999999999999999999999999887 999999998764321 235689999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.+..+..+.. . .+....++.+++.+||++..++.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 128 (220)
T cd03265 83 SVDDELTGWENLYIHARLYGVP----------G------------------------AERRERIDELLDFVGLLEAADRL 128 (220)
T ss_pred cccccCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCC
Confidence 9999999999999865432110 0 00122356789999998766654
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|
T Consensus 129 -----~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i 202 (220)
T cd03265 129 -----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRV 202 (220)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 457999999999998766 499999999999999999999999986532 445666888889999999999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|++++.|+++++
T Consensus 203 ~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 203 AIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEeCCEEEEeCChHHc
Confidence 99999999999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.37 Aligned_cols=200 Identities=30% Similarity=0.442 Sum_probs=162.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHI 251 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 251 (1436)
.+++++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 8 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~ 84 (213)
T cd03259 8 KTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALF 84 (213)
T ss_pred EEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhc
Confidence 3344467999999999999999999999999999999999999887 9999999998754332 35799999999899
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.++....+.. .. +....++.+++.+||++..+..
T Consensus 85 ~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 127 (213)
T cd03259 85 PHLTVAENIAFGLKLRGVP----------KA------------------------EIRARVRELLELVGLEGLLNRY--- 127 (213)
T ss_pred cCCcHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhcC---
Confidence 9999999998864322100 00 0112345678899998766544
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|
T Consensus 128 --~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 128 --PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEE
Confidence 457999999999998766 599999999999999999999999986533 445566788888999999999999
Q ss_pred cCCeEEEec
Q 038815 407 SDGLIVYLG 415 (1436)
Q Consensus 407 ~~G~iv~~G 415 (1436)
++|++++.|
T Consensus 205 ~~G~i~~~g 213 (213)
T cd03259 205 NEGRIVQVG 213 (213)
T ss_pred ECCEEEecC
Confidence 999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=331.36 Aligned_cols=187 Identities=28% Similarity=0.376 Sum_probs=162.7
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999865 357999999986532 234567999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|+|++.+.+.++. .+..+..+.++++++.++|.+..+..+ +.|||||||||+||++|+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998766542 233344557899999999998877764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+.++..+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~ 193 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDR 193 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999878999999999975 67777887
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=313.41 Aligned_cols=199 Identities=27% Similarity=0.317 Sum_probs=165.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ +++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 45677776542 12469999999999999999999999999999999999865 35799999998653
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. .+++.++|++|+..+++.+||+|++.+....+. ...+...+.++++++.++|.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999988754331 22334456788999999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 206 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHR 206 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998777999999999975 45555676
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=332.81 Aligned_cols=202 Identities=27% Similarity=0.374 Sum_probs=169.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 250 (1436)
.+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 457999999999999999999999999999999999999987 9999999998765432 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+.....+.. +. +....++.+++.+||++..++.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~-- 137 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTP----------KA------------------------EIKARVTELLELVGLSDKADRY-- 137 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 99999999999875433210 00 0122356789999998766544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.++||+|++
T Consensus 138 ---~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 138 ---PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 457999999999998776 599999999999999999999999986543 45556678888999999999999
Q ss_pred ecCCeEEEecChHHHH
Q 038815 406 LSDGLIVYLGPRELVL 421 (1436)
Q Consensus 406 L~~G~iv~~G~~~~~~ 421 (1436)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999988764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=328.39 Aligned_cols=210 Identities=28% Similarity=0.359 Sum_probs=171.7
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQ 246 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q 246 (1436)
+++.+++++.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEec
Confidence 34445555667999999999999999999999999999999999999887 999999998874322 2467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.+.....+.. .. +....++.+++.+||++..+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~l~~~~~ 130 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMS----------TR------------------------EIEAVIPSLLEFARLESKAD 130 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhc
Confidence 999999999999998754332110 00 01122456788999988776
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+.+ +.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++.++||
T Consensus 131 ~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 131 VRV-----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCD 203 (303)
T ss_pred Cch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCC
Confidence 655 46999999999998766 5999999999999999999999999865 3 4556668888899999999
Q ss_pred eEEEecCCeEEEecChHHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~ 422 (1436)
+|++|++|++++.|+.+++..
T Consensus 204 ~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 204 RLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.89 Aligned_cols=186 Identities=27% Similarity=0.384 Sum_probs=157.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++..||+
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 469999999999999999999999999999999999865 357999999986532 12345799999999888889999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
|++.+....+. ...++..+.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654331 233444557889999999988777663 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.++..+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~ 200 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADR 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 99999999999999864 899999999974 45556676
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=334.02 Aligned_cols=199 Identities=23% Similarity=0.319 Sum_probs=172.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. .+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478888887653 3569999999999999999999999999999999999876 3579999999875
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+..+.++++++.++|.+..+.. +..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 42 224578999999999999999999999976543 234455566789999999999988876 367999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|+++|++. +++++.|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDr 214 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDR 214 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999875 999999999974 68888898
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.04 Aligned_cols=189 Identities=29% Similarity=0.372 Sum_probs=158.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---c-ccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---T-FTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~l 967 (1436)
+.+|+|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 469999999999999999999999999999999999865 3579999999865431 1 234699999999999999
Q ss_pred CHHHHHHHhhhhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 038815 968 TVYESLLYSAWLRLPPE-------VDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1040 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1040 (1436)
||+|++.+....+.... ....+..+.++++++.++|.+..+.. ++.|||||||||+||++|+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988654321110 11234455788999999998776665 3579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1041 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1041 ~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||||+|||..++..+++.|+++++.|+|||+++|++. ++.+..|+
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999878999999999986 56677787
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=297.02 Aligned_cols=210 Identities=24% Similarity=0.364 Sum_probs=179.8
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEEEc
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAYIS 245 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~ 245 (1436)
++.++++++++++|||+.|++||+++++|||||||||...++.|+..|+ +|+|.++|.+++..... .-++|+|
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccccc
Confidence 4567778889999999999999999999999999999999999999998 99999999999877653 3579999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++..|..|||+|||.-..+.+.... ...+.+...+.+|+.|+|.|++
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr 133 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLR 133 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHh
Confidence 99999999999999987665432100 0012234467899999999988
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+.. .-.||||||+|+.||||+. ++||||++|.||-+..+|-+.++.+.+ ++.-|+.+-|+-.|+.+.+
T Consensus 134 ~~~-----a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~ 206 (243)
T COG1137 134 DSK-----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDIC 206 (243)
T ss_pred cCc-----ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhh
Confidence 865 3469999999999999885 999999999999999999999999865 3455555789999999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
||.+++++|++..+|+++++.
T Consensus 207 dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 207 DRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred heEEEEecCeEEecCCHHHHh
Confidence 999999999999999999875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=311.93 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=157.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 965 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 357999999986532 124567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
.+|++|++.+....+. ...++..+.++++++.++|.+..+.. +..||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654432 23344456788999999998877765 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~ 205 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHR 205 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999777999999999974 34445565
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.34 Aligned_cols=186 Identities=31% Similarity=0.385 Sum_probs=158.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 569999999999999999999999999999999999865 357999999976532 2345679999999989999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++.+....+. .+.++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 91 WENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 999988755432 223334556889999999988777663 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~ 201 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDR 201 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999876 899999999975 45566676
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=313.54 Aligned_cols=202 Identities=27% Similarity=0.382 Sum_probs=166.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++.. .....+|+|+|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4567777655310 011269999999999999999999999999999999999865 35799999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ..+++.+||++|++.+++.+||+|++.+....+. ...++..+.++++++.++|.+..+.. ++.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 2 2345679999999988898999999987654431 23344556788999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+..|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 205 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDR 205 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999777999999999975 55666676
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=299.74 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=170.8
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv 244 (1436)
+++...+.+.++|+|||+++++||+++|+||||+|||||||+|+|..++. +|+|.++|.|++...+. .-++||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 34556677889999999999999999999999999999999999999987 99999999999887664 568999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-Ccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-LDI 323 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~ 323 (1436)
||....||.|||+|||..++..+... +.. .. ..|.+.+.|- |..
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~------------~~~-----~~------------------~~e~v~~lFP~Lke 128 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDK------------EAQ-----ER------------------DLEEVYELFPRLKE 128 (237)
T ss_pred cccccchhhCcHHHHHhhhhhccccc------------ccc-----cc------------------cHHHHHHHChhHHH
Confidence 99999999999999999875433110 000 00 0222333332 233
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
-.+..-| .|||||||-++||||+ +|+|||||.||-|.-..+|.+.++++.+. .+.+|+.+.|....+.+
T Consensus 129 r~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~ 202 (237)
T COG0410 129 RRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALE 202 (237)
T ss_pred HhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHH
Confidence 3344444 5999999999998777 49999999999999999999999998764 35677779999999999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+.++|.+|++++.|+.+++.
T Consensus 203 iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 203 IADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred hhCEEEEEeCCEEEEecCHHHHh
Confidence 99999999999999999999875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=316.13 Aligned_cols=211 Identities=29% Similarity=0.411 Sum_probs=168.4
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDN 249 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~ 249 (1436)
+..+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 8 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 84 (239)
T cd03296 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYA 84 (239)
T ss_pred EEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCc
Confidence 334444567999999999999999999999999999999999999887 9999999988754332 356999999998
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
+++.+||+||+.++....+...+. .. .+....++.+++.+||++..+..
T Consensus 85 ~~~~~tv~e~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~- 133 (239)
T cd03296 85 LFRHMTVFDNVAFGLRVKPRSERP------PE------------------------AEIRAKVHELLKLVQLDWLADRY- 133 (239)
T ss_pred ccCCCCHHHHHhhhhhhccccccC------CH------------------------HHHHHHHHHHHHHcCChhhhhcC-
Confidence 899999999998865332110000 00 00112356788999997655544
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.+++|+|+
T Consensus 134 ----~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~ 208 (239)
T cd03296 134 ----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVV 208 (239)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEE
Confidence 457999999999998776 5999999999999999999999999865334 455557788888999999999
Q ss_pred EecCCeEEEecChHHH
Q 038815 405 LLSDGLIVYLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~ 420 (1436)
+|++|++++.|+.+++
T Consensus 209 ~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 209 VMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEECCeEEEecCHHHH
Confidence 9999999999998765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=329.94 Aligned_cols=199 Identities=26% Similarity=0.357 Sum_probs=171.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++..+. ++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 578888887653 3579999999999999999999999999999999999876 3579999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 946 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++.+||++|+..+++.+||+|++.+.+.++. .+..+..+.++++++.++|.+..++.+ ++|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 2356789999999999999999999998665442 233334456788999999998888775 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+.+ ++-+..|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~ 241 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 241 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999975 67777888
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=331.65 Aligned_cols=201 Identities=25% Similarity=0.376 Sum_probs=170.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56777776542 3569999999999999999999999999999999999865 35799999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ...++.+|||+|+..++|.+||+||+.|....+.. ...+.++..++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 2 23356799999999999999999999987653211 1234455567889999999999888776 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|+++|++. ++.+..|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dr 206 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADR 206 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999875 899999999974 67788888
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=315.38 Aligned_cols=186 Identities=29% Similarity=0.373 Sum_probs=158.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---c-ccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---T-FTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~l 967 (1436)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 569999999999999999999999999999999999865 3579999999865321 1 235699999999999999
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
||+|++.+....+. ...++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+
T Consensus 91 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 91 TVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999987643332 22334455688999999998877665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1048 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||..++..+.+.|+++++.|.|||+++|++. ++.+..|+
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 202 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDR 202 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999877999999999986 67777787
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=327.37 Aligned_cols=199 Identities=27% Similarity=0.346 Sum_probs=168.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367788876542 3569999999999999999999999999999999999765 3579999999865
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 946 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++.+||++|+..+++.+||+|++.+.+..+. .+.++..+.++++++.++|.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2345679999999988899999999987554331 233334456788999999988877764 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~ 204 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 204 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999985 56677887
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=315.58 Aligned_cols=213 Identities=29% Similarity=0.371 Sum_probs=167.9
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHDN 249 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~ 249 (1436)
++++.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 85 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccc
Confidence 334457999999999999999999999999999999999999887 9999999998765432 245899999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
+++.+||+||+.++....+... ..+. .... ...+....++.+++.+||++..++
T Consensus 86 l~~~~tv~~~l~~~~~~~~~~~-------~~~~------~~~~-----------~~~~~~~~~~~~l~~~~l~~~~~~-- 139 (236)
T cd03219 86 LFPELTVLENVMVAAQARTGSG-------LLLA------RARR-----------EEREARERAEELLERVGLADLADR-- 139 (236)
T ss_pred cccCCCHHHHHHHHHhhccccc-------cccc------cccc-----------cHHHHHHHHHHHHHHcCccchhhC--
Confidence 9999999999988654321000 0000 0000 000112345678899999875554
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++.+++|+|+
T Consensus 140 ---~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~ 214 (236)
T cd03219 140 ---PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVT 214 (236)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEE
Confidence 4557999999999998766 5999999999999999999999999865 34 455567888889999999999
Q ss_pred EecCCeEEEecChHHH
Q 038815 405 LLSDGLIVYLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~ 420 (1436)
+|++|++++.|+++++
T Consensus 215 ~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 215 VLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEeCCEEEeecCHHHh
Confidence 9999999999988775
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=320.21 Aligned_cols=209 Identities=25% Similarity=0.364 Sum_probs=170.8
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~ 242 (1436)
++.+++..+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEE
Confidence 3445556678999999999999999999999999999999999999987 9999999988754321 24699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++.+||+||+.+.....+.. . .+....++.+++.+||+
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~ 151 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVP----------R------------------------AEREERAAEALELVGLE 151 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCH
Confidence 9999999999999999998865432110 0 00112356688999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..++.+ +.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.
T Consensus 152 ~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~ 225 (269)
T cd03294 152 GWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEAL 225 (269)
T ss_pred hHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH
Confidence 7666554 47999999999998776 4999999999999999999999999865434 45555788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|++++|++|++++.|+.+++.
T Consensus 226 ~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=314.26 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=167.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQ 246 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q 246 (1436)
+..+++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (232)
T cd03218 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQ 82 (232)
T ss_pred EEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecC
Confidence 334444567999999999999999999999999999999999999987 9999999988754332 246899999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.+.....+.. + .+....++.+++.+||++..+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~ 128 (232)
T cd03218 83 EASIFRKLTVEENILAVLEIRGLS----------K------------------------KEREEKLEELLEEFHITHLRK 128 (232)
T ss_pred CccccccCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhh
Confidence 999999999999998754322110 0 001123567889999987655
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+. ++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +++++.++|+.+++.+++|
T Consensus 129 ~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 129 SK-----ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITD 201 (232)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCC
Confidence 44 457999999999998766 5999999999999999999999998764 3 4455667888889999999
Q ss_pred eEEEecCCeEEEecChHHH
Q 038815 402 DIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++|++|++++.|+.+++
T Consensus 202 ~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 202 RAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEEEECCeEEEEeCHHHh
Confidence 9999999999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=313.75 Aligned_cols=199 Identities=31% Similarity=0.389 Sum_probs=164.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDNHIG 252 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 252 (1436)
++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 7999999999999999999999999999999999999987 9999999998754321 356999999999999
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+||+||+.+.....+.. . ......++.+++.+||++..+..
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 137 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------K------------------------AEIEERVLELLELVGLEDKADAY---- 137 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhcC----
Confidence 999999998864332110 0 00112356789999998766544
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 138 -~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 -PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 457999999999998766 599999999999999999999999876533 4455557788888999999999999
Q ss_pred CCeEEEecChHHH
Q 038815 408 DGLIVYLGPRELV 420 (1436)
Q Consensus 408 ~G~iv~~G~~~~~ 420 (1436)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999988765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=321.85 Aligned_cols=213 Identities=27% Similarity=0.408 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-----ccceEEEEcCCCC-CC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-----PQRVAAYISQHDN-HI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 251 (1436)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999886532 2467999999863 44
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--ccccccc
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD--ICADTLV 329 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~v 329 (1436)
..+||+||+.|+....+.. + .+....++++++.+||+ +..|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~--- 139 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------E------------------------EEIENRVKRAMNIVGLDYEDYKD--- 139 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhcc---
Confidence 4689999999864322110 0 11223456789999996 4344
Q ss_pred cCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
..++.|||||||||+||++++ |+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 140 --~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 140 --KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 456689999999999988774 9999999999999999999999998653 35566668888899999999999
Q ss_pred EecCCeEEEecChHHHHH---HHHhcCCCCCC
Q 038815 405 LLSDGLIVYLGPRELVLD---FFESMGFKCPE 433 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~~---~F~~lGf~cp~ 433 (1436)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345665554
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=333.27 Aligned_cols=199 Identities=25% Similarity=0.358 Sum_probs=170.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367778876542 3569999999999999999999999999999999999865 3579999999875
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...++.+|||+|+..+++.+||+||+.|....+. .+.++..+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 42 2234679999999999999999999998765432 234455567899999999998877763 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~ 203 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999985 67788888
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=310.59 Aligned_cols=182 Identities=29% Similarity=0.357 Sum_probs=153.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCC-CCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI-HSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~-~~~~lTv~ 970 (1436)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999865 457999999987643345567999999964 33467999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
||+.+....+ . . ..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~--~---~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL--D---A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc--C---c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 1245789999999988777763 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 195 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDR 195 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999877999999999985 35555665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=309.49 Aligned_cols=199 Identities=30% Similarity=0.435 Sum_probs=162.7
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIG 252 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~ 252 (1436)
+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (213)
T cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYP 85 (213)
T ss_pred EECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhcc
Confidence 334457999999999999999999999999999999999999887 9999999998754332 356999999998889
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+||+||+.++.+..+.. . .+....++.+++.+||++..+..
T Consensus 86 ~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 127 (213)
T cd03301 86 HMTVYDNIAFGLKLRKVP----------K------------------------DEIDERVREVAELLQIEHLLDRK---- 127 (213)
T ss_pred CCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhCC----
Confidence 999999998864332110 0 00112356778999998766654
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++.||||||||++||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|+
T Consensus 128 -~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~ 205 (213)
T cd03301 128 -PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMN 205 (213)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEE
Confidence 457999999999998766 5999999999999999999999999875434 455557788889999999999999
Q ss_pred CCeEEEec
Q 038815 408 DGLIVYLG 415 (1436)
Q Consensus 408 ~G~iv~~G 415 (1436)
+|++++.|
T Consensus 206 ~g~~~~~g 213 (213)
T cd03301 206 DGQIQQIG 213 (213)
T ss_pred CCEEEecC
Confidence 99999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=313.20 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=164.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++.. ...+.+|+|+|+.|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37788888765310 011469999999999999999999999999999999999865 4589999999865
Q ss_pred cccc------c-cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 946 KQET------F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
.... . ++.+||++|+..+++.+||+|++.+...++ ....++..+.++++++.+||.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 3211 2 256999999998888999999998865432 122334456788999999998777665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++.. + +.+|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~ 214 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSR 214 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCE
Confidence 999999999999999999999999999999999999999999999876 58999999999854 3 33455
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=325.31 Aligned_cols=208 Identities=26% Similarity=0.328 Sum_probs=173.6
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQH 247 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~ 247 (1436)
++.++++++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+
T Consensus 7 ~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~ 83 (301)
T TIGR03522 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEH 83 (301)
T ss_pred EEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCC
Confidence 3444555677999999999999999999999999999999999999987 999999999875422 24579999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++.+||.|||.+.++..+... .+....++.+++.+||++..++
T Consensus 84 ~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~ 129 (301)
T TIGR03522 84 NPLYLDMYVREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHK 129 (301)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcC
Confidence 999999999999998765442110 0012235678999999987775
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+ +.|||||||||+||++++ ++|||||+|||+.++.++.+.++++.. + ++|+.++|..+++.++||+
T Consensus 130 ~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 130 KI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDR 201 (301)
T ss_pred ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCE
Confidence 54 469999999999987764 999999999999999999999998742 4 5566688899999999999
Q ss_pred EEEecCCeEEEecChHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~ 422 (1436)
|++|++|++++.|+.+++..
T Consensus 202 i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 202 VIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEEEECCEEEEeCCHHHHHH
Confidence 99999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=313.56 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=165.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56778876553 2569999999999999999999999999999999999865 35799999998653
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ..++.++|++|++.+++.+||+|++.+....+.. ......+..+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 21 2245799999999888889999999886543211 00122334456789999999987777653 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 206 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADR 206 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999875 899999999984 46667787
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=331.26 Aligned_cols=199 Identities=24% Similarity=0.336 Sum_probs=172.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++..+. +..+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 578888876542 3469999999999999999999999999999999999876 4579999999875
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...+|.+|||+|+..++|++||.||+.|....+ ..+..+..++++++++.++|.+..+.. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 42 235678999999999999999999999976543 234455667899999999999888776 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.+ .|.|+|+++|++. +++.+-|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDr 219 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGR 219 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999866 4899999999975 68888888
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=314.18 Aligned_cols=204 Identities=25% Similarity=0.353 Sum_probs=164.1
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCcccEEEEcCccCCCCC-----ccceEE
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL-----DSSLKVSGRVTYNGHNMDEFE-----PQRVAA 242 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~ 242 (1436)
.+++++++|+|+|++|++||+++|+|||||||||||++|+|.+ +|. +|+|.++|.++.... .++.++
T Consensus 8 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~ 84 (227)
T cd03260 8 VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVG 84 (227)
T ss_pred EEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEE
Confidence 3344457999999999999999999999999999999999999 776 999999999875432 235799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.++ .+||+||+.++.+..+... + .+....++.+++.+||+
T Consensus 85 ~~~q~~~~~-~~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~ 130 (227)
T cd03260 85 MVFQKPNPF-PGSIYDNVAYGLRLHGIKL---------K------------------------EELDERVEEALRKAALW 130 (227)
T ss_pred EEecCchhc-cccHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCC
Confidence 999998877 8999999988654321100 0 00112346678999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+..+. ++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.
T Consensus 131 ~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~ 204 (227)
T cd03260 131 DEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAA 204 (227)
T ss_pred hHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHH
Confidence 65554320 468999999999998766 5999999999999999999999999864 3 55666788888999
Q ss_pred hhcCeEEEecCCeEEEecChHH
Q 038815 398 DLFDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~ 419 (1436)
+++|+|++|++|++++.|++++
T Consensus 205 ~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 205 RVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999998754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=329.68 Aligned_cols=202 Identities=24% Similarity=0.283 Sum_probs=169.2
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++.. ..++.+|+|+|+.|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5677887765310 013579999999999999999999999999999999999875 35799999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ..++.+||++|+..+++.+||+||+.+....+. .+.++..+.++++++.+||.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 21 235679999999999999999999998755431 23444556789999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++-+..|+
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~ 210 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDR 210 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999765 899999999985 56677888
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=329.67 Aligned_cols=188 Identities=24% Similarity=0.269 Sum_probs=164.0
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cc----cceEEEeccCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TF----TRISGYCEQNDI 962 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~d~ 962 (1436)
+.+.+|+|+|+.|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.... .+ ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34679999999999999999999999999999999999876 4589999999876431 22 568999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
++|.+||+||+.|...+. ..+.+++.+++.++++.+||.+..+.. +..|||||||||+|||+|+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 234556677899999999998887776 357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||+.++..+++.++++.+. |+|||+++|+.. ++....|+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~dr 199 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDR 199 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999998764 899999999975 46777788
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=309.55 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=157.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-----ccccceEEEeccCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-----ETFTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~ 966 (1436)
+.+|+++|+.++|||++||+|||||||||||++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 469999999999999999999999999999999999865 357999999986521 2345789999999998989
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
+|++|++.+...... ..+.++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987643111 123334456788999999998777765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~ 204 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADR 204 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999877999999999975 44455665
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=308.99 Aligned_cols=182 Identities=30% Similarity=0.388 Sum_probs=154.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++||+|++.+++..||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 469999999999999999999999999999999999865 458999999976532 23456799999999888899999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
|++.+....+. . ..+.++++++.++|.+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 91 ENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 99988654321 1 1345788999999988777653 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 195 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADR 195 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999998877999999999975 34444555
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=309.33 Aligned_cols=195 Identities=30% Similarity=0.387 Sum_probs=161.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 57999999999999999999999999999999999999887 9999999988753 346799999999889999999
Q ss_pred HHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 258 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
||+.++....+.. .. .....++.+++.+||++..+.. +..|
T Consensus 92 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~L 132 (220)
T cd03293 92 DNVALGLELQGVP----------KA------------------------EARERAEELLELVGLSGFENAY-----PHQL 132 (220)
T ss_pred HHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCC-----cccC
Confidence 9998865432110 00 0112356788999998765544 4579
Q ss_pred CHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 038815 338 SGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DGL 410 (1436)
Q Consensus 338 SGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~--~G~ 410 (1436)
||||||||+||+++ +++|||||+|||+.++..+.+.|+++....+ ++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999998766 5999999999999999999999998755334 455557788888999999999999 799
Q ss_pred EEEecCh
Q 038815 411 IVYLGPR 417 (1436)
Q Consensus 411 iv~~G~~ 417 (1436)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=308.39 Aligned_cols=197 Identities=28% Similarity=0.402 Sum_probs=161.7
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 253 (1436)
+++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 9 ~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~ 84 (210)
T cd03269 9 RFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPK 84 (210)
T ss_pred EECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcC
Confidence 334457999999999999999999999999999999999999887 9999999987653 234679999999988999
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+||+.+....++... .+....++++++.+||++..++.
T Consensus 85 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 125 (210)
T cd03269 85 MKVIDQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKR----- 125 (210)
T ss_pred CcHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCc-----
Confidence 999999988644322100 00112356788999998766644
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+.+++.+++|++++|++
T Consensus 126 ~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNK 203 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeC
Confidence 457999999999998766 5999999999999999999999998764 3 44566678888899999999999999
Q ss_pred CeEEEec
Q 038815 409 GLIVYLG 415 (1436)
Q Consensus 409 G~iv~~G 415 (1436)
|++++.|
T Consensus 204 g~i~~~~ 210 (210)
T cd03269 204 GRAVLYG 210 (210)
T ss_pred CEEEecC
Confidence 9998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=312.75 Aligned_cols=189 Identities=25% Similarity=0.274 Sum_probs=156.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEcCeeccc-----ccccceEEEeccCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITISGYLKKQ-----ETFTRISGYCEQNDIH 963 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 963 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.... .+.+|+|.++|.+... ..+++.+||++|++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 4699999999999999999999999999999999997610 2458999999986532 2345679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
+ .+||+||+.+....+. ....++..+.++++++.+||.+..+.... +..||||||||++||++|+.+|++|+||
T Consensus 93 ~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred c-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7 7999999988654431 11222234568899999999876665421 2579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.++..+++.|++++++ +|||+++|++. ++.+..|+
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~ 209 (227)
T cd03260 167 EPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADR 209 (227)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCE
Confidence 999999999999999999999876 99999999975 56667787
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=313.37 Aligned_cols=185 Identities=26% Similarity=0.309 Sum_probs=159.0
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc------cccceEEEeccCCCCCCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE------TFTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~~ 966 (1436)
.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999875 3579999999875321 235679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
+|++|++.+....+. .......+.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 23344456788999999998877765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 210 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDR 210 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999775 899999999975 56677787
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=310.13 Aligned_cols=202 Identities=25% Similarity=0.368 Sum_probs=162.8
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHD 248 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d 248 (1436)
.+++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (222)
T cd03224 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGR 84 (222)
T ss_pred eecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEecccc
Confidence 3444457999999999999999999999999999999999999987 9999999988755432 35699999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc-CCcccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL-GLDICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t 327 (1436)
.+++.+||+||+.++....+ . . +.....+.+++.+ ++++..++
T Consensus 85 ~~~~~~t~~~~l~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~~~l~~~~~~ 128 (222)
T cd03224 85 RIFPELTVEENLLLGAYARR--R----------A------------------------KRKARLERVYELFPRLKERRKQ 128 (222)
T ss_pred ccCCCCcHHHHHHHHhhhcC--c----------h------------------------hHHHHHHHHHHHHHhhhhhhhC
Confidence 99999999999988643221 0 0 0011233456666 46554444
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|+
T Consensus 129 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 129 -----LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADR 201 (222)
T ss_pred -----chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccE
Confidence 3457999999999998766 5999999999999999999999998765 3 45556678888899999999
Q ss_pred EEEecCCeEEEecChHHH
Q 038815 403 IILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~ 420 (1436)
|++|++|++++.|+.+++
T Consensus 202 i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 202 AYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEEeeCCeEEEeCCHHHH
Confidence 999999999999988765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=303.02 Aligned_cols=178 Identities=25% Similarity=0.316 Sum_probs=150.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-----ccccceEEEeccCCC-CCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-----ETFTRISGYCEQNDI-HSP 965 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~-~~~ 965 (1436)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+.. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 569999999999999999999999999999999999865 357999999986531 134567999999963 233
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
..||+||+.+....+ ..+.++..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999998865432 1233444556889999999988777753 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
|+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=309.96 Aligned_cols=198 Identities=32% Similarity=0.440 Sum_probs=163.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 255 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 57999999999999999999999999999999999999887 999999999875321 2356999999998888999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+||+.+..+..+.. .. +....++.+++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLP----------KS------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 999998865433210 00 01123466788999987666544 4
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++++ + ++++.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999998766 5999999999999999999999998753 3 556667888888989999999999999
Q ss_pred EEEecChHHH
Q 038815 411 IVYLGPRELV 420 (1436)
Q Consensus 411 iv~~G~~~~~ 420 (1436)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999987754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=308.85 Aligned_cols=186 Identities=27% Similarity=0.359 Sum_probs=155.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCC-CCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDI-HSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 967 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|+.. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999865 357999999976532 234567999999974 35678
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
|++|++.+....+ ........+.++++++.++|.+..+.. +..|||||||||+||++|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764432 122333445678999999998776665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1048 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 203 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADR 203 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999877999999999975 44455665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.53 Aligned_cols=201 Identities=29% Similarity=0.442 Sum_probs=164.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 56999999999999999999999999999999999999887 9999999988754332 35689999999999999
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc--cccccccCc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI--CADTLVGDE 332 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~ 332 (1436)
||+||+.++.+..+.. . .+....++.+++.+||++ ..+ +
T Consensus 91 tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~l~~~~~~~-----~ 131 (242)
T cd03295 91 TVEENIALVPKLLKWP----------K------------------------EKIRERADELLALVGLDPAEFAD-----R 131 (242)
T ss_pred cHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcHHHHh-----c
Confidence 9999998864332110 0 001123467889999975 333 4
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4567999999999998776 499999999999999999999999986533 4555667788888999999999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=308.83 Aligned_cols=201 Identities=24% Similarity=0.323 Sum_probs=162.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+... .+.+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4567777655310 012569999999999999999999999999999999999865 35799999998653
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 947 QE---T---FT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~~---~---~~-~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
.. . ++ +.++|++|+..+++.+||+|++.+....+. ....+..+.++++++.+||.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 22 569999999988889999999988654331 22233345678999999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++.. + +..|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~ 210 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDR 210 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCE
Confidence 999999999999999999999999999999999999999999999764 8999999999863 3 34565
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=318.56 Aligned_cols=188 Identities=24% Similarity=0.271 Sum_probs=159.6
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---c----ccceEEEeccCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---T----FTRISGYCEQNDI 962 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~d~ 962 (1436)
+.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.+||++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999865 3579999999865321 1 1357999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
+++.+||+|++.+....+. ....+..+.++++++.++|.+..+..+ +.||||||||++||++|+.+|+||+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9989999999988654321 223344566889999999988777764 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||..+...+.+.|+++++. |+|||+++|++. ++.+..|+
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~ 230 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDR 230 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999998764 899999999975 46677787
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.37 Aligned_cols=208 Identities=30% Similarity=0.400 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNHI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 251 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 57999999999999999999999999999999999999887 999999999876543 135689999999899
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.++..... .. . ... .+... ......++.+++.+||.+..+.
T Consensus 91 ~~~tv~~~l~~~~~~~~-~~-~---~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~---- 140 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-ST-W---RSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQ---- 140 (241)
T ss_pred ccCcHHHHHHhhhcccc-hh-h---hhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCC----
Confidence 99999999987532110 00 0 000 00000 0012235667899999765554
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|
T Consensus 141 -~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 141 -RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4567999999999998766 5999999999999999999999999865334 45566788888999999999999
Q ss_pred cCCeEEEecChHHH
Q 038815 407 SDGLIVYLGPRELV 420 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~ 420 (1436)
++|++++.|+.+++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=308.66 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=170.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|++|+++. +..+|+|+|+.+++||.++|+|+||||||||+++|+|... +.+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 567888887642 2579999999999999999999999999999999999876 35699999998754
Q ss_pred ----cccccceEEEeccCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 947 ----QETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 947 ----~~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
...+++.+|||+|++.+ +-.-||.|.+.|+..- ...+.++.+++++++++.+|+.++++.. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 34578899999999644 4457999999998643 2345667888999999999999998876 468999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||+||.+|+.+|++|+|||||||||+.+...+++.++++.++ |.|||+++|+.. .+.+.-|+
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~ 208 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADR 208 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCE
Confidence 9999999999999999999999999999999999999999999877 789999999853 45555666
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=314.46 Aligned_cols=189 Identities=30% Similarity=0.312 Sum_probs=156.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 965 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+..+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999865 357999999986532 124567999999998889
Q ss_pred CCCHHHHHHHhhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 038815 966 LVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1040 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1040 (1436)
.+||+|++.+...... ..........+.++++++.++|.+..+.. +..|||||||||+||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532100 00111123345678899999998776665 3579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1041 FMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1041 ~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||||+|||+.+...+++.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~ 214 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADR 214 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999764 899999999986 46667777
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=316.23 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=169.7
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAA 242 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~ 242 (1436)
+++..+++++.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 11 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred eCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEE
Confidence 34444455567999999999999999999999999999999999999887 999999998875432 135689
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++.+||.||+.+....... .... .....++.+++.+||+
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~ 134 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLR 134 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCCh
Confidence 999999899999999999875421100 0000 0112345678999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+.. +..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.
T Consensus 135 ~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~ 208 (269)
T PRK11831 135 GAAKLM-----PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVL 208 (269)
T ss_pred hhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHH
Confidence 766654 457999999999998766 599999999999999999999999986533 455556788889999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++|++++.|+++++.
T Consensus 209 ~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 209 SIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999987753
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.96 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=163.4
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 45667765542 2469999999999999999999999999999999999865 35799999998654
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1026 (1436)
. ..+.+||++|+..+++..||+|++.+....+ .....+..+.++++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 2 2345899999998888899999998764432 123344456788999999998776665 35799999999
Q ss_pred HHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1027 l~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~ 198 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATE 198 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999854 5899999999986 56677787
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=309.29 Aligned_cols=190 Identities=25% Similarity=0.369 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNHI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 251 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.++.+..+.. . .+....++.+++.+||++..+..
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 135 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------P------------------------RDANERVSAALEKVGLEGKAHAL--- 135 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC---
Confidence 9999999999865432110 0 00112356688999998766544
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.+++|+|++|
T Consensus 136 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 136 --PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999998776 5999999999999999999999998754 3 445566788888999999999999
Q ss_pred cCCeE
Q 038815 407 SDGLI 411 (1436)
Q Consensus 407 ~~G~i 411 (1436)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=338.09 Aligned_cols=205 Identities=25% Similarity=0.446 Sum_probs=168.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIG 252 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 252 (1436)
++.+||||+|++|+|||.+||+|||||||||+.++|...++|+ +|+|++||+|+.+.++ ++.+|+|.|+|.+|.
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 4567999999999999999999999999999999999999998 9999999999988876 478999999999887
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
. ||+|||.|+... .+.|..+.++.... ..+. +.++++.+||.||++
T Consensus 556 ~-sI~eNI~YG~~~-------------------------~t~e~i~~AAk~AN-----ah~F---I~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 556 G-SIRENIAYGLDN-------------------------ATDEEIEAAAKMAN-----AHEF---ITNFPDGYNTVVGEK 601 (716)
T ss_pred c-cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----hHHH---HHhCccccccccCCc
Confidence 5 999999997531 11122222221111 1122 235899999999976
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.. .||||||||++||||++ |||||.||+||+++...+-+.|.+..+ +.|+++ |.| .-.+.+.+|+|++++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAH-RLSTV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAH-RLSTVRHADQIVVID 676 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eeh-hhhHhhhccEEEEEc
Confidence 55 79999999999999985 999999999999999999999987654 455555 544 456778899999999
Q ss_pred CCeEEEecChHHHHH
Q 038815 408 DGLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~ 422 (1436)
+|++++.|.++++++
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999999864
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=309.03 Aligned_cols=185 Identities=27% Similarity=0.412 Sum_probs=157.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.+||++|+..+++..||
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 569999999999999999999999999999999999865 358999999987532 2345679999999988889999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++.+....+. .+.++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654432 223334456889999999987777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.+...+.+.|+++++ ++|||+++|++. ++-+..|+
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 201 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDR 201 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999876 699999999986 45556676
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=319.70 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCCC-
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHDN- 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 249 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 46999999999999999999999999999999999999987 99999999987531 12357999999852
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-cccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 328 (1436)
.+...||+||+.|+....+.. . .+....++.+++.+||+ +..++
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------E------------------------EDAKQKAREMIELVGLPEELLAR- 141 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCChhhhhC-
Confidence 344579999999865432110 0 01122456789999996 44443
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++.++.+.|++++... +++|+.++|+.+++.+++|+|
T Consensus 142 ----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 142 ----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 4567999999999998776 599999999999999999999999986533 455666888899999999999
Q ss_pred EEecCCeEEEecChHHHHH---HHHhcCCCCCC
Q 038815 404 ILLSDGLIVYLGPRELVLD---FFESMGFKCPE 433 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~---~F~~lGf~cp~ 433 (1436)
++|++|++++.|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999887642 33444554443
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=284.09 Aligned_cols=181 Identities=27% Similarity=0.312 Sum_probs=154.9
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
..+..|.+||++||+||||||||||||.|||... +.+|+|.|||.+... ....|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678999999999999999999999999999877 458999999987643 3456789999999999999999999987
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1055 (1436)
+.. |.-.-.++.+++++.++..+||..+.+.+ +..|||||||||++||+|+++-+||+||||+|.||+.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 632 21112234556799999999999998887 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1056 IVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1056 ~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+..++.++++ ++.|+++++|+|+ |+-..-|+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~ 199 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADR 199 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhc
Confidence 99999999976 5899999999996 45455555
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=328.20 Aligned_cols=204 Identities=23% Similarity=0.328 Sum_probs=169.8
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCC
Q 038815 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQH 247 (1436)
Q Consensus 175 ~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 247 (1436)
++...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 34456899999999999999999999999999999999999987 9999999998765432 2469999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++.+||+||+.|+.+..+... . +....++++++.+||++..+.
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~e~L~~~gL~~~~~~ 160 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINA----------E------------------------ERREKALDALRQVGLENYAHS 160 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhc
Confidence 999999999999998765432110 0 011235678999999876554
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+||+++ +|||||||+|||+.++.++.+.|+++.+..+ ++||.++|+.+++.+++|+
T Consensus 161 -----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 161 -----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCE
Confidence 4567999999999998876 4999999999999999999999998765434 4555678889999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 235 i~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 235 IAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEECCEEEecCCHHHHH
Confidence 9999999999999988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=308.70 Aligned_cols=187 Identities=26% Similarity=0.388 Sum_probs=153.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCC--CCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHS--PLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv 969 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. ...||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999865 35799999997653 3456799999997653 33799
Q ss_pred HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 970 YESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 970 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
+||+.+....+.. .....+...+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 0011223345688999999998776665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 201 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999877999999999975 45556676
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=330.49 Aligned_cols=201 Identities=25% Similarity=0.337 Sum_probs=168.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 66778876542 3679999999999999999999999999999999999865 45799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
. ...++.+|||+|+..+++.+||+|++.+....... .....++..+.++++++.++|.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHH
Confidence 3 34567899999999988899999999875421110 0001233456789999999999888876 4679999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+.|||+|+++|++|+|||||+|||+.++..+++.|+++++.|.|||+++|+++ ++.+..|+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877999999999975 57777888
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=307.53 Aligned_cols=199 Identities=25% Similarity=0.307 Sum_probs=163.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 45677776542 12469999999999999999999999999999999999865 45799999997653
Q ss_pred c---c---cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q---E---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~---~---~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. . .+++.++|++|+..+++..||+|++.+....+ ..+.++..+.++++++.+++.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 24567999999998888899999998865443 123344445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|.|||+++|++. ++-+..|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYR 206 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999777899999999975 34444565
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=313.35 Aligned_cols=199 Identities=26% Similarity=0.342 Sum_probs=165.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 66778876552 2469999999999999999999999999999999999865 35799999997653
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 947 Q-----------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 947 ~-----------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
. ...++.++|++|++.+++..||+|++.+...... ....++..+.++++++.+||.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 1 1235679999999988888999999987543211 123344456788999999998776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++.|.|||+++|++. ++.+..|+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 4679999999999999999999999999999999999999999999999877999999999975 46666777
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=304.91 Aligned_cols=185 Identities=23% Similarity=0.363 Sum_probs=156.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc---c----ccccceEEEeccCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK---Q----ETFTRISGYCEQNDIHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~d~~~ 964 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|+..++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 569999999999999999999999999999999999865 45799999998632 1 12456799999999988
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
+..|++||+.+....+ .....+..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1233444567889999999988777663 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||+.+...+.+.|+++.++|.|||+++|++. +.+..|+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~ 202 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADR 202 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCE
Confidence 99999999999999999998877999999999985 2344453
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=329.61 Aligned_cols=213 Identities=26% Similarity=0.405 Sum_probs=173.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEc
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYIS 245 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~ 245 (1436)
+++..+++++++|+|+|+.|++||+++|+||||||||||||+|+|.++|. +|+|.++|.++..... ++.++|++
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 34455556678999999999999999999999999999999999999987 9999999998765432 46799999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++.+||+||+.++...... ++. .. ..+....++++++.+||.+..
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~--~~~---~~-------------------------~~~~~~~v~~~le~vgl~~~~ 133 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRS--RFD---TW-------------------------TETDRAAVERAMERTGVAQFA 133 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcc--ccc---CC-------------------------CHHHHHHHHHHHHHcCCchhh
Confidence 999888999999999986421100 000 00 001123467789999998766
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++. ++.|||||||||.||+++ +|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.++|
T Consensus 134 ~~~-----~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~a 206 (402)
T PRK09536 134 DRP-----VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYC 206 (402)
T ss_pred cCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhC
Confidence 654 557999999999998877 4999999999999999999999999875 34 45666889999999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|++++|++|++++.|+++++.
T Consensus 207 drii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 207 DELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=312.06 Aligned_cols=186 Identities=27% Similarity=0.358 Sum_probs=157.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+.+|+|+|+.|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 469999999999999999999999999999999999865 357999999986532 234567999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
|+||+.+...++. .+.++..+.++++++.++|.+ ..+.. ++.|||||||||+||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654431 233444567889999999985 55554 4679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~ 205 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADR 205 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999875 899999999985 45566677
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=320.83 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=168.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|++..+. ++.+|+|+|+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56777776542 3579999999999999999999999999999999999865 45899999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++..+.++++++.+||.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 2 2345679999999999999999999998776542 233444556899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||++||++|+.+|++|+|||||+|||+.+...+++.|+++++ ++|||+++|++. ++-+..|+
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~ 201 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDR 201 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999865 799999999975 57777888
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=307.91 Aligned_cols=190 Identities=29% Similarity=0.396 Sum_probs=154.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHDNH 250 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 250 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 57999999999999999999999999999999999999887 9999999998765431 3569999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.++...++.. . .+....++.+++.+||++..+..
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 137 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------K------------------------KERRERAEELLERVGLGDRLNHY-- 137 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhcC--
Confidence 99999999999865432110 0 00112356788999998765544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++. .+|++++
T Consensus 138 ---~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 138 ---PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ---hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 457999999999998766 5999999999999999999999999865334 44555677777775 9999999
Q ss_pred ecCCeE
Q 038815 406 LSDGLI 411 (1436)
Q Consensus 406 L~~G~i 411 (1436)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=303.13 Aligned_cols=175 Identities=24% Similarity=0.312 Sum_probs=151.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+||
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 569999999999999999999999999999999999865 357999999976532 2345679999999988899999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++.+....+. . ...+.++++++.+||.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 92 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 92 LENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred HHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999988654321 1 1234678999999998777765 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
|+.+...+++.|++++++|.|||+++|++.
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 999999999999998877899999999975
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.30 Aligned_cols=196 Identities=27% Similarity=0.367 Sum_probs=160.5
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-CccceEEEEcCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-EPQRVAAYISQHDNH 250 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~ 250 (1436)
..+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 7 TKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGF 83 (208)
T ss_pred EEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCcc
Confidence 33344567999999999999999999999999999999999999887 99999999876532 123568999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+.....+. ....++.+++.+||++..+..
T Consensus 84 ~~~~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~-- 123 (208)
T cd03268 84 YPNLTARENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKK-- 123 (208)
T ss_pred CccCcHHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhh--
Confidence 9999999999886432110 011245678899998766544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++.|||||||||+|++++ +++|||||+|||+.++..+.+.|+++.+ .+ .+++.++|+.+++.+++|++++
T Consensus 124 ---~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 124 ---VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGI 198 (208)
T ss_pred ---HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEE
Confidence 457999999999997766 5999999999999999999999998765 34 4555577888899999999999
Q ss_pred ecCCeEEEec
Q 038815 406 LSDGLIVYLG 415 (1436)
Q Consensus 406 L~~G~iv~~G 415 (1436)
|++|++++.|
T Consensus 199 l~~g~i~~~g 208 (208)
T cd03268 199 INKGKLIEEG 208 (208)
T ss_pred EECCEEEecC
Confidence 9999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=310.40 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=165.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+.++|||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 45677766542 2469999999999999999999999999999999999765 45799999998754
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 947 Q-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 947 ~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
. ...++.++|++|+...++.+||+|++.+...... .....+..+.++++++.+||.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2345679999999988889999999987542111 123344456788999999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||..+...+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 205 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASR 205 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999975 45566777
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=314.83 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=168.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCC-CCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDN-HIG 252 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~ 252 (1436)
...+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhc
Confidence 356999999999999999999999999999999999999987 9999999998764332 356999999863 456
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+||+||+.|+....+.. + .+.+..++.+++.+||.+..+..
T Consensus 94 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~---- 135 (274)
T PRK13647 94 SSTVWDDVAFGPVNMGLD----------K------------------------DEVERRVEEALKAVRMWDFRDKP---- 135 (274)
T ss_pred cCcHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCC----
Confidence 789999999864322110 0 01122356789999998766544
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
+..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|++++. . +++|+.++|+.+++.+++|+|++|+
T Consensus 136 -~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~ 212 (274)
T PRK13647 136 -PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLK 212 (274)
T ss_pred -hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 457999999999998776 4999999999999999999999999865 3 4555667888889999999999999
Q ss_pred CCeEEEecChHHHH--HHHHhcCCCCC
Q 038815 408 DGLIVYLGPRELVL--DFFESMGFKCP 432 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~--~~F~~lGf~cp 432 (1436)
+|++++.|+++++. +.++..|+.+|
T Consensus 213 ~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 213 EGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 99999999986542 23333444443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.51 Aligned_cols=184 Identities=29% Similarity=0.408 Sum_probs=154.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---c-ccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---T-FTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~l 967 (1436)
+.+|+|+|+.++|||++||+|||||||||||++|+|..+ +.+|+|.++|.+.... . .++.++|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 469999999999999999999999999999999999865 3579999999765321 1 245699999999999999
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
|++|++.+....+. ..+..+.++++++.+ ++.+..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122334567788887 566655654 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.++..+++.|+++++.|+|||+++|++. ++.+..|+
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADR 201 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccE
Confidence 999999999999999999877899999999974 45666777
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=305.05 Aligned_cols=187 Identities=30% Similarity=0.384 Sum_probs=153.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC-CCCCCCH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN-HIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 256 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 57999999999999999999999999999999999999987 9999999988754333457999999964 3557899
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.++....+ . ....++.+++.+||++..++. +..
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERH-----PLS 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCC-----chh
Confidence 999987542110 0 001245678999998766644 457
Q ss_pred CCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ .+ .+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999998766 5999999999999999999999998764 34 4555577888889999999999999997
Q ss_pred E
Q 038815 412 V 412 (1436)
Q Consensus 412 v 412 (1436)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=311.83 Aligned_cols=209 Identities=27% Similarity=0.334 Sum_probs=164.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 250 (1436)
++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 456999999999999999999999999999999999999887 999999998875432 24569999999989
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.++...... .. .... +.. ..+....++.+++.+||.+..+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~--~~---~~~~------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~--- 141 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKP--TW---RSLL------GRF---------------SEEDKERALSALERVGLADKAYQ--- 141 (243)
T ss_pred cccccHHHHHhhccccccc--ch---hhhh------ccc---------------cHHHHHHHHHHHHHcCcHhhhcC---
Confidence 9999999999875321100 00 0000 000 00112235667899999765554
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|++
T Consensus 142 --~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 142 --RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVG 218 (243)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEE
Confidence 4557999999999998766 599999999999999999999999986533 44555678888889999999999
Q ss_pred ecCCeEEEecChHHH
Q 038815 406 LSDGLIVYLGPRELV 420 (1436)
Q Consensus 406 L~~G~iv~~G~~~~~ 420 (1436)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=313.55 Aligned_cols=189 Identities=28% Similarity=0.279 Sum_probs=156.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 965 (1436)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ..+++.+||++|+..+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 469999999999999999999999999999999999865 357999999976532 124567999999998889
Q ss_pred CCCHHHHHHHhhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 038815 966 LVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1040 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il 1040 (1436)
.+||+|++.+...... .......+..++++++++.++|.+..+.. +..|||||||||+||++|+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999976421100 00111223345688999999998776665 3579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1041 FMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1041 ~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~ 215 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADR 215 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 999999999999999999999998764 899999999976 45667787
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=324.07 Aligned_cols=206 Identities=25% Similarity=0.314 Sum_probs=170.5
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc----cCCCCCc-------cceE
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH----NMDEFEP-------QRVA 241 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~ 241 (1436)
++++...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|. ++..... ++.+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4456678999999999999999999999999999999999999987 999999996 3333221 1469
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+||+|++.++|.+||+||+.++...++... .+....++++++.+||
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL 154 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGL 154 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 999999999999999999998764432110 0112235678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..|.. +..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+.+++
T Consensus 155 ~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~ 228 (382)
T TIGR03415 155 AQWADKK-----PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEA 228 (382)
T ss_pred chhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH
Confidence 8766554 457999999999998776 5999999999999999999999999865434 5555588899999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|+|++|++|+++..|+++++.
T Consensus 229 ~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 229 LKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=317.73 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=165.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67788887653110 012469999999999999999999999999999999999865 45899999998764
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCC
Q 038815 947 Q-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN--PLRQSLVGLPGVSG 1018 (1436)
Q Consensus 947 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 1018 (1436)
. ...++.+|||+|++. .+...||+|++.|..... ..+.++..+.++++++.+||. +..+.. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134578999999863 333579999998865432 234555666789999999997 555654 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999875 999999999974 46677888
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=349.90 Aligned_cols=203 Identities=30% Similarity=0.451 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||.|++..++ |+.++||+|++.+|. -
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-g 561 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-G 561 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-C
Confidence 36999999999999999999999999999999999999998 9999999999987765 588999999986665 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
||+||+.++. |+.+.++.+.++...+.. + -...++..+||.||+ +.
T Consensus 562 SI~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~-----~---fI~~lP~gy~t~v~E-~G 607 (709)
T COG2274 562 SIRENIALGN-------------------------PEATDEEIIEAAQLAGAH-----E---FIENLPMGYDTPVGE-GG 607 (709)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcH-----H---HHHhccccccccccc-CC
Confidence 9999999853 223334444444332221 1 123588889999996 55
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
.+||||||||++|||++ ||+||||||+||+.+...|.+.|.++.+ ++|+|+..|+ ..+.+.+|+|++|++|
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHR--l~ti~~adrIiVl~~G 683 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHR--LSTIRSADRIIVLDQG 683 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEcc--chHhhhccEEEEccCC
Confidence 68999999999999877 5999999999999999999999998753 5676665444 4678899999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
+++.+|+.+++.+
T Consensus 684 kiv~~gs~~ell~ 696 (709)
T COG2274 684 KIVEQGSHEELLA 696 (709)
T ss_pred ceeccCCHHHHHH
Confidence 9999999999875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=307.37 Aligned_cols=206 Identities=28% Similarity=0.358 Sum_probs=164.9
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc--cceEEEEcCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP--QRVAAYISQHDN 249 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~ 249 (1436)
..+++++++|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.
T Consensus 8 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~ 84 (236)
T TIGR03864 8 SFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPT 84 (236)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCC
Confidence 33344567999999999999999999999999999999999999887 9999999988754322 246899999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
+++.+||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 85 ~~~~~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 130 (236)
T TIGR03864 85 LDLDLSVRQNLRYHAALHGLS----------R------------------------AEARERIAALLARLGLAERADDKV 130 (236)
T ss_pred CcccCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCCh
Confidence 889999999998754322110 0 001123466788999987666544
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
..|||||||||+||+++ +++|||||+|||+.+...+.+.|+++++..+. +++.++|..+++. .+|+++
T Consensus 131 -----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tiii~sH~~~~~~-~~d~i~ 203 (236)
T TIGR03864 131 -----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL-SVLWATHLVDEIE-ADDRLV 203 (236)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecChhhHh-hCCEEE
Confidence 47999999999998766 59999999999999999999999998653344 4555677777775 499999
Q ss_pred EecCCeEEEecChHHHH
Q 038815 405 LLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++++.|+.+++.
T Consensus 204 ~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 204 VLHRGRVLADGAAAELR 220 (236)
T ss_pred EEeCCeEEEeCCHHHHH
Confidence 99999999999887764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=307.95 Aligned_cols=187 Identities=27% Similarity=0.294 Sum_probs=152.2
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc------ccccceEEEeccCC--CCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ------ETFTRISGYCEQND--IHS 964 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~~~ 964 (1436)
.+|+|+|+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+... ..+++.+||++|+. .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999865 357999999986532 23456899999997 466
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
+.+||+||+.+......+. ...+.....++++++.+++. +..+.. +..||||||||++||++|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998765433211 11111122236888999995 455554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.++..+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 999999999999999999999875 899999999985 45556676
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.31 Aligned_cols=193 Identities=31% Similarity=0.449 Sum_probs=159.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--CccceEEEEcCCCCCCCCCCH
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--EPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 99999999887532 124579999999989999999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.+.....+.. . .+....++.+++.+||++..+.. ++.
T Consensus 96 ~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G------------------------DELTARLEELADRLGMEELLDRR-----VGG 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhhh-----hhh
Confidence 99998754332110 0 01122356788999998766544 457
Q ss_pred CCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +.++|.++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999998776 4999999999999999999999998754 3 44556678888899999999999999999
Q ss_pred EEec
Q 038815 412 VYLG 415 (1436)
Q Consensus 412 v~~G 415 (1436)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=315.50 Aligned_cols=219 Identities=28% Similarity=0.383 Sum_probs=173.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCC-CC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHD-NH 250 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 250 (1436)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987421 1245799999986 23
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-cccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADTLV 329 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~v 329 (1436)
+...||.||+.|+....+.. + .+....++++++.+||.+ ..+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~--- 139 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------K------------------------EKAEKIAAEKLEMVGLADEFWE--- 139 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhcc---
Confidence 44479999999876433210 0 011223567889999953 334
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+.+++.+++|+|+
T Consensus 140 --~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 --KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred --CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 44668999999999998766 5999999999999999999999998764 3 4556667888899999999999
Q ss_pred EecCCeEEEecChHHHH---HHHHhcCCCCCCCCCHHHHH
Q 038815 405 LLSDGLIVYLGPRELVL---DFFESMGFKCPERKGVADFL 441 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~---~~F~~lGf~cp~~~~~adfl 441 (1436)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556677776644444433
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=319.87 Aligned_cols=202 Identities=26% Similarity=0.383 Sum_probs=160.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
++||+++||+|++||.++|+|+|||||||+||+|.+.++ + +|+|.+||.++++... |+.+|||||+..+|. -
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-d 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-D 439 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccc-h
Confidence 459999999999999999999999999999999999998 5 9999999999987655 578999999887665 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
||.+||.++..- ...++..+++... ...|. ...|++.++|.||+++.
T Consensus 440 TIl~NI~YGn~s-------------------------as~eeV~e~~k~a-----~~hd~---i~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 440 TILYNIKYGNPS-------------------------ASDEEVVEACKRA-----GLHDV---ISRLPDGYQTLVGERGL 486 (591)
T ss_pred hHHHHhhcCCCC-------------------------cCHHHHHHHHHHc-----CcHHH---HHhccccchhhHhhccc
Confidence 999999986311 0111111111100 01111 23478899999998655
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
-|||||||||+++||. ++++|||||.||+.|..++++.+++. ..++|+|+ +.|.. .+...||+|++|++|
T Consensus 487 -~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~-IvH~l-~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 487 -MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIM-IVHRL-DLLKDFDKIIVLDNG 561 (591)
T ss_pred -ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEE-EEecc-hhHhcCCEEEEEECC
Confidence 6999999999999877 49999999999999999999999983 23556655 55544 567789999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
++...|+.++++.
T Consensus 562 ~v~e~gth~ell~ 574 (591)
T KOG0057|consen 562 TVKEYGTHSELLA 574 (591)
T ss_pred eeEEeccHHHHhh
Confidence 9999999999875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=313.45 Aligned_cols=200 Identities=21% Similarity=0.296 Sum_probs=165.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 477888887542 3569999999999999999999999999999999999865 3579999999765
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
... ..++.++|++|+..+++.+||.||+.+...... ..+.++..+.++++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 321 135679999999988899999999987543211 1233334456788999999988777653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 213 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADH 213 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCE
Confidence 999999999999999999999999999999999999999999998765 899999999974 46666777
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=308.82 Aligned_cols=206 Identities=21% Similarity=0.319 Sum_probs=166.5
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-----ccceEEEEcC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-----PQRVAAYISQ 246 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q 246 (1436)
..+++++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|
T Consensus 8 ~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 84 (240)
T PRK09493 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQ 84 (240)
T ss_pred EEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEec
Confidence 33444567999999999999999999999999999999999999887 999999999875421 2356899999
Q ss_pred CCCCCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 247 HDNHIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
++..++.+||+||+.++... .+. .+ .+....++++++.+||++..
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gl~~~~ 130 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRVRGA----------SK------------------------EEAEKQARELLAKVGLAERA 130 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCChHHH
Confidence 99889999999999875321 110 00 00112356788999997655
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+. .++.|||||||||+||+++ +++|||||+|||..++..+.+.|+++.+ .+ ++++.++|+.+++.+++
T Consensus 131 ~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~ 203 (240)
T PRK09493 131 HH-----YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVA 203 (240)
T ss_pred hc-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhC
Confidence 54 4457999999999998766 5999999999999999999999998754 34 45556778888999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|++++|++|++++.|+.+++.
T Consensus 204 d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 204 SRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999987753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=339.76 Aligned_cols=194 Identities=27% Similarity=0.409 Sum_probs=164.3
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
...++|+||++.++..+ +.++|+|+|++++|||.|||+||||+||||+.+.|-...+ +.+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 34799999999998643 4689999999999999999999999999999999998765 56899999999
Q ss_pred eccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCcccccccCCCC
Q 038815 944 LKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKM-----FIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 944 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
|+++ ..+++.+|+|.|++.++. -||+||+.|+.. +.+.++... .+.+.+ .++.+-.||.||..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc
Confidence 8754 457899999999999986 599999999743 333333221 122222 356667899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
. .||||||||++|||||++||+||+|||.||.||+++...|.++|.++.+ ++|||++.|..|
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS 664 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS 664 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh
Confidence 4 7999999999999999999999999999999999999999999998766 699999999875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=311.04 Aligned_cols=207 Identities=26% Similarity=0.358 Sum_probs=166.5
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-----------Cccc
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----------EPQR 239 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----------~~~~ 239 (1436)
+..+++++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T PRK11264 9 LVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQ 85 (250)
T ss_pred eEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhh
Confidence 334444557999999999999999999999999999999999999887 99999999887532 1235
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc
Q 038815 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL 319 (1436)
Q Consensus 240 ~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 319 (1436)
.++|++|++.+++.+||+||+.++..... +. .. .+....++.+++.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~--------~~------------------------~~~~~~~~~~l~~~ 132 (250)
T PRK11264 86 HVGFVFQNFNLFPHRTVLENIIEGPVIVK-GE--------PK------------------------EEATARARELLAKV 132 (250)
T ss_pred hEEEEecCcccCCCCCHHHHHHHHHHHhc-CC--------CH------------------------HHHHHHHHHHHHHc
Confidence 68999999989999999999987532110 00 00 01122346678899
Q ss_pred CCcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 038815 320 GLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP 394 (1436)
Q Consensus 320 gL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 394 (1436)
||++..|+ .++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ .+ .+|+.++|+.+
T Consensus 133 gl~~~~~~-----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~ 205 (250)
T PRK11264 133 GLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMS 205 (250)
T ss_pred CCcchhhC-----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHH
Confidence 99876554 4557999999999998766 5999999999999999999999998764 34 45555788888
Q ss_pred hHHhhcCeEEEecCCeEEEecChHHH
Q 038815 395 ETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 395 ~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
++.+++|+|++|++|++++.|+.+++
T Consensus 206 ~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 206 FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999998775
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=306.82 Aligned_cols=196 Identities=25% Similarity=0.321 Sum_probs=159.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHDNH 250 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 250 (1436)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 56999999999999999999999999999999999999887 9999999998765432 2469999999989
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+.....+.. .. +.+..++.+++.+||++..++.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~-- 142 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PA------------------------EINSRALEMLAAVGLEHRANHR-- 142 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 99999999999864322110 00 0112356788999998765544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++.. +|++++
T Consensus 143 ---~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 143 ---PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 457999999999998766 599999999999999999999999876533 4455557777777765 589999
Q ss_pred ecCCeEEEecCh
Q 038815 406 LSDGLIVYLGPR 417 (1436)
Q Consensus 406 L~~G~iv~~G~~ 417 (1436)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=314.14 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCC-CCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHD-NHIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 253 (1436)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 45999999999999999999999999999999999999987 9999999998764322 35789999997 36778
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+|||.|+.+..+.. + .+....++.+++.+||++..+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~----- 137 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------H------------------------EEMKERVNEALELVGMQDFKERE----- 137 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCC-----
Confidence 99999999864322110 0 01122356789999998765544
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++ ..+|+|++|++
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEEC
Confidence 557999999999998877 4999999999999999999999999865434 4555567777777 58999999999
Q ss_pred CeEEEecChHHHHH---HHHhcCCCCC
Q 038815 409 GLIVYLGPRELVLD---FFESMGFKCP 432 (1436)
Q Consensus 409 G~iv~~G~~~~~~~---~F~~lGf~cp 432 (1436)
|+++..|+++++.+ .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999887652 2344455443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=301.77 Aligned_cols=218 Identities=27% Similarity=0.358 Sum_probs=188.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHD 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 248 (1436)
....-++|+|+.|+.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 4455789999999999999999999999999999999999998 9999999999876654 36789999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.++|..||.||..|+.+.+|++.. +.+.+..++|+..||+..++
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~-- 159 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYAD-- 159 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhh--
Confidence 999999999999999999876421 22344677899999998776
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.++++||||+||||.+|||+ ||+||||+|+|||--+.++.+.|.++.+..++|+| .++|+.+|++++.|+|
T Consensus 160 ---~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIv-FitHDLdEAlriG~rI 235 (386)
T COG4175 160 ---KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIV-FITHDLDEALRIGDRI 235 (386)
T ss_pred ---cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEE-EEecCHHHHHhccceE
Confidence 55778999999999999887 59999999999999999999999888777666655 4899999999999999
Q ss_pred EEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhh
Q 038815 404 ILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEV 444 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v 444 (1436)
.+|.+|+|+..|++++++. .|...-+++|..++
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999873 35555567776654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=299.67 Aligned_cols=175 Identities=25% Similarity=0.332 Sum_probs=150.6
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 3579999999999999999999999999999999999765 357999999976432 234567999999988888899
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|.|++.+....+. . + .+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987644331 1 1 235788999999988777653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
||..+...+++.|++++++|.|||+++|++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999998878999999999984
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=293.75 Aligned_cols=201 Identities=26% Similarity=0.309 Sum_probs=162.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++.+|++..+.... ....+|+|||+++.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 356777776554211 112599999999999999999999999999999999998763 579999999765
Q ss_pred ccc----cccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 038815 946 KQE----TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~ 1018 (1436)
... .+.+.+-+|+||+ .+.|..||++.|.=..+. ...++.++ ++.++++.+||.+ ..+.. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 4678899999997 567999999988543222 22333333 3899999999976 33433 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++|||||+.+|++|++|||||+||+..+.+|++.|.++.++ |.|.|+++||-+ -+..+.|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdR 211 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDR 211 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhh
Confidence 9999999999999999999999999999999999999999999999864 889999999954 46666777
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=319.62 Aligned_cols=204 Identities=24% Similarity=0.269 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCC--C
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHD--N 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 249 (1436)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 57999999999999999999999999999999999999887 9999999998865432 35799999997 5
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
++|.+||.||+.+..+....+ ..+ .+....++.+++.+||... +
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~------------------------~~~~~~~~~~l~~vgl~~~----~ 154 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSR------------------------QEVKDRVKAMMLKVGLLPN----L 154 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCH------------------------HHHHHHHHHHHHHcCCChH----H
Confidence 889999999999865432100 000 0112335678999999421 2
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.+..+..|||||||||+||+++ +|++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+|+
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 3456678999999999998877 49999999999999999999999998654 34566668999999999999999
Q ss_pred EecCCeEEEecChHHHH
Q 038815 405 LLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++++.|+.+++.
T Consensus 234 vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 234 VMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999998774
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=308.94 Aligned_cols=199 Identities=27% Similarity=0.366 Sum_probs=165.2
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ ++.+|+|+|+.++|||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56677776542 3569999999999999999999999999999999999865 35799999998653
Q ss_pred c----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 947 Q----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 947 ~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
. ...++.++|++|++.+++.+||+||+.+...++. ..+.++....++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234679999999988888999999987643321 123334456788999999998766654 3679999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.+++++++|.|||+++|++. ++.+..|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998877999999999974 56677787
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=308.39 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=167.2
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQ 246 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q 246 (1436)
+..+++++.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|
T Consensus 9 l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 85 (241)
T PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQ 85 (241)
T ss_pred cEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 344444567999999999999999999999999999999999999887 9999999998755332 356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++..++.+||.||+.+..+..+. ... .+....++.+++.+||++..+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~ 132 (241)
T PRK10895 86 EASIFRRLSVYDNLMAVLQIRDD---------LSA------------------------EQREDRANELMEEFHIEHLRD 132 (241)
T ss_pred CCcccccCcHHHHHhhhhhcccc---------cCH------------------------HHHHHHHHHHHHHcCCHHHhh
Confidence 99889999999999875432100 000 011223567889999976544
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
. .++.|||||||||+||+++ +++|||||+|||+.++..+.+.++++.. .+ .+++.++|+..++.+++|
T Consensus 133 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 133 S-----MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SG-LGVLITDHNVRETLAVCE 205 (241)
T ss_pred c-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEEcCHHHHHHhcC
Confidence 3 4567999999999998766 5999999999999999999999998754 34 455557788889999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
++++|++|++++.|+.+++.
T Consensus 206 ~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 206 RAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999987653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=303.77 Aligned_cols=184 Identities=35% Similarity=0.478 Sum_probs=155.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|+|+.+++| ++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 999999999999999999999865 357999999976532 2345679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++.+...++. .+.++..+.++++++.++|.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988655432 22333355688999999998877765 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.+...+.+.|+++++ +.|||+++|++. .+.+..|+
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 198 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQ 198 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCE
Confidence 99999999999999876 599999999975 35555666
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=303.73 Aligned_cols=197 Identities=30% Similarity=0.406 Sum_probs=161.1
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNH 250 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~ 250 (1436)
.+..+.++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 8 ~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 8 KRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcc
Confidence 3334457999999999999 99999999999999999999999987 999999998875432 24578999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+.....+.. + .+....++.+++.+||++..++.+
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 128 (211)
T cd03264 84 YPNFTVREFLDYIAWLKGIP----------S------------------------KEVKARVDEVLELVNLGDRAKKKI- 128 (211)
T ss_pred cccCCHHHHHHHHHHHhCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHhCch-
Confidence 99999999998865432110 0 001123567889999987666544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|++++
T Consensus 129 ----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 201 (211)
T cd03264 129 ----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAV 201 (211)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEE
Confidence 57999999999998776 4999999999999999999999998753 4 5566678888899999999999
Q ss_pred ecCCeEEEec
Q 038815 406 LSDGLIVYLG 415 (1436)
Q Consensus 406 L~~G~iv~~G 415 (1436)
|++|++++.|
T Consensus 202 l~~g~i~~~g 211 (211)
T cd03264 202 LNKGKLVFEG 211 (211)
T ss_pred EECCEEEecC
Confidence 9999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=306.16 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=162.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+.|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45667766542 3569999999999999999999999999999999999865 35799999997653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ....+.++|++|+..+++..|++|++.+.+..+ ....++..+.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357999999988888899999998765443 1233334556889999999987776653 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +|+|||+++|++.. + +..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 201 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDR 201 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCE
Confidence 999999999999999999999999999999999999999985 58999999999864 2 33666
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=317.29 Aligned_cols=204 Identities=26% Similarity=0.296 Sum_probs=165.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.... ...+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67888888764210 012459999999999999999999999999999999999865 35799999998753
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038815 947 Q-------ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1017 (1436)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..+.. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999852 233479999998875432 233444456789999999996 556655 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+.
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv 216 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQI 216 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 79999999999999999999999999999999999999999999999765 999999999986 577788883
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.41 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=163.3
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
+++..+++++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++
T Consensus 16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~ 90 (257)
T PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDA 90 (257)
T ss_pred EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCc
Confidence 34444555567999999999999999999999999999999999999987 9999999977542 245699999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.++... . ....++.+++.+||++..+.
T Consensus 91 ~l~~~~tv~enl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~- 129 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANE- 129 (257)
T ss_pred cCCCCCcHHHHHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcC-
Confidence 889999999999874210 0 01124567889999875554
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+ .+|+.++|+..++.+++|+|
T Consensus 130 ----~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 130 ----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred ----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEE
Confidence 4567999999999998766 5999999999999999999999998765434 45555788888899999999
Q ss_pred EEecCCeEEEecChH
Q 038815 404 ILLSDGLIVYLGPRE 418 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~ 418 (1436)
++|++|++++.|+.+
T Consensus 205 ~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 205 LLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEECCEEEeecccc
Confidence 999999999988654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=317.08 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=162.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC-----------------------
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----------------------- 234 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------------------- 234 (1436)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999987 8999999876421
Q ss_pred ----CCccceEEEEcCCC-CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHH
Q 038815 235 ----FEPQRVAAYISQHD-NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEAN 309 (1436)
Q Consensus 235 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1436)
...++.++||+|++ ..+...||+|||.|+....+.. + .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H------------------------HHHH
Confidence 01235789999985 3455679999999875433210 0 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 038815 310 VLTDYYLKVLGLD-ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNG 383 (1436)
Q Consensus 310 ~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~ 383 (1436)
..++.+++.+||+ +..+ +.+..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3456789999996 4444 44668999999999998776 4999999999999999999999999864 3 4
Q ss_pred eEEEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 384 TAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 384 t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+.++|+.+++.+++|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666889999999999999999999999999998864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=290.39 Aligned_cols=192 Identities=28% Similarity=0.346 Sum_probs=167.0
Q ss_pred cCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccc----ccceEEEeccCCCCC
Q 038815 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQET----FTRISGYCEQNDIHS 964 (1436)
Q Consensus 889 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~d~~~ 964 (1436)
++++++++|||+.+++||+++|+|||||||||.+.++.|... +.+|.|.+||.++.... -+.-+||.||+...|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 456789999999999999999999999999999999999876 34799999998765422 233589999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
..+||+||++-....+.. +...+++++.++++|+.+++.++++... ..||||||||+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999876655532 2234566777899999999999999873 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|++|+|+.+...|.+.++.+++.|.-|++|-|.-. |.....|++
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRa 209 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRA 209 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheE
Confidence 99999999999999999999999999999999865 567778884
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=309.97 Aligned_cols=199 Identities=22% Similarity=0.260 Sum_probs=165.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|...
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 467888877653 3569999999999999999999999999999999999865 3579999999764
Q ss_pred cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHhhh-hcCCCCCCHHHHHHHHHHHHHHcCCCccc-
Q 038815 946 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSAW-LRLPPEVDSETRKMFIEEIMELVELNPLR- 1007 (1436)
Q Consensus 946 ~~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~-lr~~~~~~~~~~~~~v~~~l~~l~L~~~~- 1007 (1436)
.. ..+++.++|++|++.+++.+||+||+.+... .+ .....+..+.++++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 21 1345679999999999999999999987542 21 123344556788999999997753
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1008 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
+.. +..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|++. ++-+..|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 4679999999999999999999999999999999999999999999999877999999999975 4555677
Q ss_pred h
Q 038815 1088 E 1088 (1436)
Q Consensus 1088 ~ 1088 (1436)
+
T Consensus 221 ~ 221 (257)
T PRK10619 221 H 221 (257)
T ss_pred E
Confidence 7
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=318.23 Aligned_cols=209 Identities=22% Similarity=0.255 Sum_probs=170.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCC-
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHD- 248 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 248 (1436)
...+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 3579999999999999999999999999999999999998742348999999998865432 13699999997
Q ss_pred -CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 249 -NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 249 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.+.|.+||.+++.+.....+. ..+ .+....+.++++.+||++..+.
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~---------~~~------------------------~~~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKG---------MSK------------------------AEAFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcC---------CCH------------------------HHHHHHHHHHHHHcCCCChHHH
Confidence 688999999999875433210 000 0112235677899999754332
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
-+.++++|||||||||+||+|+ ++++||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+
T Consensus 155 --~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 155 --MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred --hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCE
Confidence 2467889999999999998877 49999999999999999999999998764 355666688999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+.+++.
T Consensus 232 i~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 232 VLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=309.94 Aligned_cols=191 Identities=22% Similarity=0.259 Sum_probs=162.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 588999987653 2469999999999999999999999999999999999865 3579999999764
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ..++.++|++|+..+++.+||+|++.+... . ...+.++++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 2 345679999999988888999999987421 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|+|||+++|++. ++-+..|+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~ 203 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADR 203 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999865 4899999999986 45666787
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=322.50 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=159.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 255 (1436)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+... ++.++||+|++.+|+ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999987 9999999999877654 588999999997666 59
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+||||.++... ...+...++... ..+.+.+.-+...||.+|+ ..+
T Consensus 411 ireNi~l~~~~-------------------------~s~e~i~~al~~---------a~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPD-------------------------ASDEEIIAALDQ---------AGLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCc-------------------------CCHHHHHHHHHH---------hcHHHhhcCCCcccchhcc-CCC
Confidence 99999986311 000111111000 0112222224566899996 567
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
+|||||+|||++|||+ ++++||||++||.++...|.+.|.++++ ++|+++. +|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~i-tHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVI-THR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEE-EcC-hHHHhcCCEEEEecCCc
Confidence 9999999999999987 4999999999999999999999999875 4666664 444 34566789999999999
Q ss_pred EEEecChHHHHH
Q 038815 411 IVYLGPRELVLD 422 (1436)
Q Consensus 411 iv~~G~~~~~~~ 422 (1436)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999998853
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=308.77 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=163.3
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
..+++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.++
T Consensus 8 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~ 82 (255)
T PRK11248 8 YADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLL 82 (255)
T ss_pred EEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccC
Confidence 33444467999999999999999999999999999999999999887 99999999987542 34589999999889
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.+.....+.. . .+....++.+++.+||++..+.
T Consensus 83 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~---- 124 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKR---- 124 (255)
T ss_pred CCCcHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhC----
Confidence 9999999998764322110 0 0011235678899999876554
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++||.++|+.+++.+++|+|++|
T Consensus 125 -~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 125 -YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3457999999999998766 599999999999999999999999875433 445555788888999999999999
Q ss_pred c--CCeEEEecChH
Q 038815 407 S--DGLIVYLGPRE 418 (1436)
Q Consensus 407 ~--~G~iv~~G~~~ 418 (1436)
+ +|+++..++.+
T Consensus 203 ~~~~G~i~~~~~~~ 216 (255)
T PRK11248 203 SPGPGRVVERLPLN 216 (255)
T ss_pred eCCCcEEEEEecCC
Confidence 8 59999987653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=313.11 Aligned_cols=200 Identities=26% Similarity=0.327 Sum_probs=165.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ ++..+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 367888877653 12459999999999999999999999999999999999765 3579999999876
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.+||++|++. .++..||+|++.|..... ..+.++..+.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 234567999999863 345689999998864321 2334444566889999999988777763 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999975 46677888
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=303.33 Aligned_cols=202 Identities=25% Similarity=0.362 Sum_probs=164.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++.. .....+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47888888765311 011359999999999999999999999999999999999865 3579999999865
Q ss_pred cccc------c-cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 946 KQET------F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
.... . ++.++|++|+..+++.+||+|++.+....+. .+..+..+.++++++.++|.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 3211 1 2579999999988899999999987654331 223344567889999999987766653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++||++|+.+|++|+|||||+|||..+...+.+.|++++++ |.|||+++|++.. + +..|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 215 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDR 215 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998764 8999999999863 3 44565
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=307.79 Aligned_cols=201 Identities=23% Similarity=0.253 Sum_probs=163.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcCe
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISGY 943 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g~ 943 (1436)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 66778876542 246999999999999999999999999999999999976431 35899999998
Q ss_pred eccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccCCCCC
Q 038815 944 LKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL----RQSLVGLPGV 1016 (1436)
Q Consensus 944 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~ 1016 (1436)
+... ..+++.+||++|++.+++.+||+||+.+....+.. .....+..+.++++++.++|.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 6532 23556799999999888899999999886543211 11223445668899999998642 3333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+..|+
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDY 214 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 68999999999999999999999999999999999999999999999865 899999999986 56677787
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=322.93 Aligned_cols=190 Identities=25% Similarity=0.378 Sum_probs=161.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCCCCCCCCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 255 (1436)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999886431 12467999999999999999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+||+.|+.+.. ....++.+++.+||++..+. .++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~-----~~~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDR-----YPG 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhC-----Ccc
Confidence 999998853100 01124668899999876654 455
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++.+++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 7999999999998776 499999999999999999999999987643 4555668888999999999999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=281.18 Aligned_cols=181 Identities=28% Similarity=0.401 Sum_probs=162.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+|+|||+.|.+||.++++||||||||||||++||..+ +..|.|.+||+++....- .-|.|+|++.++|-+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999887 457999999987754322 2389999999999999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
|+.|+.++| .+++.+|.+.+.+.+..+||.+..+.. +-.|||||||||-|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 467889999999999999999988776 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHH
Q 038815 1052 RAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFE 1084 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~ 1084 (1436)
-+.++++++|-++.+ +|+.++++||+-...+|-
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 999999999998765 699999999997766663
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=299.34 Aligned_cols=180 Identities=26% Similarity=0.314 Sum_probs=152.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+.+|+|+|+.|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++.+||
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 469999999999999999999999999999999999865 357999999976532 2356789999999888889999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++.+.... . ..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 134578899999998877765 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.+...+++.|+++.++|+|+|+++|++.. +-+.+|+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~ 194 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGAR 194 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccce
Confidence 9999999999999988779999999999753 3334443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=298.18 Aligned_cols=183 Identities=28% Similarity=0.531 Sum_probs=154.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEcCee
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITISGYL 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~g~~ 944 (1436)
.++|+|++|.++.+. +++.+|+|+|+.+++||++||+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 588999999887431 2457999999999999999999999999999999999986532 568999999986
Q ss_pred ccc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 945 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 945 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
... ...++.++|++|++.+++.+||+|++.+.+..+ .+.. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 542 235667999999999999999999998753211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++. +.|+|+++|+...++.+..|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 999999999999999999999999999999999999999999765 678888888877788888887
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=307.76 Aligned_cols=199 Identities=24% Similarity=0.306 Sum_probs=162.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcCe
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISGY 943 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g~ 943 (1436)
++++|+++.+. +..+|+|+|+.+++||+++|+|+|||||||||++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 45677776542 246999999999999999999999999999999999976531 12799999998
Q ss_pred eccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCC
Q 038815 944 LKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN----PLRQSLVGLP 1014 (1436)
Q Consensus 944 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 1014 (1436)
+... ...++.+||++|+..+++ .|++||+.+....+. ..+.++..+.++++++.+||. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7532 234567999999988888 999999988654431 122344456788999999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++++ ++|||+++|++. ++.+..|+
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999877 589999999975 56667787
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=316.62 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------------------Ccc
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------------------EPQ 238 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 238 (1436)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 46999999999999999999999999999999999999987 99999999886432 124
Q ss_pred ceEEEEcCCC--CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHH
Q 038815 239 RVAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYL 316 (1436)
Q Consensus 239 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 316 (1436)
+.++||+|++ .+++ .||+||+.|+....+.. . .+....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------K------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHH
Confidence 6799999986 3554 59999998864322110 0 01122356788
Q ss_pred HHcCCc-ccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 038815 317 KVLGLD-ICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL 390 (1436)
Q Consensus 317 ~~lgL~-~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~ 390 (1436)
+.+||+ +..+ +.+..|||||||||+||++++ |+|||||+|||+.++.++.+.|+++.. . +++|+.++
T Consensus 161 ~~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVIT 233 (320)
T ss_pred HHcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEe
Confidence 999996 3333 445689999999999988774 999999999999999999999998754 3 45566678
Q ss_pred cChhhHHhhcCeEEEecCCeEEEecChHHHH---HHHHhcCCCCCC
Q 038815 391 QPAPETYDLFDDIILLSDGLIVYLGPRELVL---DFFESMGFKCPE 433 (1436)
Q Consensus 391 q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~---~~F~~lGf~cp~ 433 (1436)
|+.+++.+++|+|++|++|++++.|+++++. ..++..|..+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888899999999999999999999998764 234455555544
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=300.24 Aligned_cols=186 Identities=29% Similarity=0.394 Sum_probs=156.4
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|++..+. ++.+|+|+|+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56677765542 3469999999999999999999999999999999999765 35799999997643
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1026 (1436)
....++.++|++|++.+++..||+|++.+....+. .. .+.++++++.+||.+..+.. ++.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22256678999999888888999999987554321 11 13478899999998766655 35799999999
Q ss_pred HHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1027 l~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998878999999999975
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=304.98 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=162.2
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQH 247 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~ 247 (1436)
..+++++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (230)
T TIGR03410 7 NVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQG 83 (230)
T ss_pred EEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccC
Confidence 33344557999999999999999999999999999999999999987 9999999988754332 3468999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-Cccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-LDICAD 326 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~ 326 (1436)
+.+++.+||+||+.++....+.. . ....+.+++.++ +++..+
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~ 126 (230)
T TIGR03410 84 REIFPRLTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLG 126 (230)
T ss_pred CcccCCCcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhh
Confidence 99999999999998864322100 0 001234455555 443333
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
..++.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++++. ++++++.++|+.+++.+++|
T Consensus 127 -----~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 127 -----RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELAD 200 (230)
T ss_pred -----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCC
Confidence 44567999999999998766 59999999999999999999999987653 24555567888889999999
Q ss_pred eEEEecCCeEEEecChHHH
Q 038815 402 DIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++|++|++++.|+.+++
T Consensus 201 ~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 201 RYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEEECCEEEEECCHHHc
Confidence 9999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=318.12 Aligned_cols=203 Identities=25% Similarity=0.335 Sum_probs=165.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 588999998764210 012459999999999999999999999999999999999865 4579999999764
Q ss_pred cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 038815 946 KQ-------------------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004 (1436)
Q Consensus 946 ~~-------------------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 1004 (1436)
.. ...++.+|||+|++ .+++ .||+||+.|..... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 3554 59999998864321 233444456788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHH
Q 038815 1005 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1083 (1436)
Q Consensus 1005 -~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if 1083 (1436)
+..+.. +..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 4679999999999999999999999999999999999999999999998877999999999975 466
Q ss_pred HHhhh
Q 038815 1084 ESFDE 1088 (1436)
Q Consensus 1084 ~~FD~ 1088 (1436)
+..|+
T Consensus 241 ~~adr 245 (320)
T PRK13631 241 EVADE 245 (320)
T ss_pred HhCCE
Confidence 77888
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=303.54 Aligned_cols=199 Identities=26% Similarity=0.306 Sum_probs=160.3
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--CccceEEEEc-CCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--EPQRVAAYIS-QHDNH 250 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~ 250 (1436)
++..+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 345567999999999999999999999999999999999999987 99999999875332 1235789997 55677
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+|++.+.....+.. . ++....++.+++.+||++..++.+
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 151 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLP----------P------------------------ARFKKRLDELSELLDLEELLDTPV- 151 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCh-
Confidence 88999999998864432110 0 001123456788999988777665
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
..||||||||++||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++
T Consensus 152 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 152 ----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 46999999999998766 599999999999999999999999986533 44555578888889999999999
Q ss_pred ecCCeEEEec
Q 038815 406 LSDGLIVYLG 415 (1436)
Q Consensus 406 L~~G~iv~~G 415 (1436)
|++|++++.|
T Consensus 227 l~~G~i~~~g 236 (236)
T cd03267 227 IDKGRLLYDG 236 (236)
T ss_pred EeCCEEEecC
Confidence 9999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=311.43 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 253 (1436)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 56999999999999999999999999999999999999987 9999999998765332 357999999973 6777
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||.|||.++.+..+.. . .+....++.+++.+||++..++.
T Consensus 97 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~----- 137 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------R------------------------EEMVERVDQALRQVGMEDFLNRE----- 137 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC-----
Confidence 89999998864332110 0 01122357789999998766654
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|++++... +++|+.++|+.+++. .+|+|++|++
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 457999999999998766 599999999999999999999999986533 455555677777776 5999999999
Q ss_pred CeEEEecChHHHHH---HHHhcCCCCC
Q 038815 409 GLIVYLGPRELVLD---FFESMGFKCP 432 (1436)
Q Consensus 409 G~iv~~G~~~~~~~---~F~~lGf~cp 432 (1436)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887653 3444455444
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=313.87 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=167.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++.. +.+.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 36788888776411 12459999999999999999999999999999999999865 3579999999876
Q ss_pred cc---ccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.+||++|++ ..++..||+||+.|..... ..+.++..+.++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 32 23456799999996 3567789999998864332 2344555667899999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|++.. + +..|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dr 209 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999875 9999999999864 4 56887
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=306.02 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=163.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 56778776543 2469999999999999999999999999999999999865 35799999998642
Q ss_pred ---------cccccceEEEeccCCCCCCCCCHHHHHHHh-hhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038815 947 ---------QETFTRISGYCEQNDIHSPLVTVYESLLYS-AWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016 (1436)
Q Consensus 947 ---------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1016 (1436)
....++.++|++|+..+++.+||+|++.+. ...+ ....++..+.++++++.+||.+..+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----P 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----h
Confidence 012356799999999999999999999753 2221 122333455688999999998777765 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++.++|+|||+++|++. ++-+..|+
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 579999999999999999999999999999999999999999999999877999999999985 45566777
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=305.41 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=163.2
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEc
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYIS 245 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~ 245 (1436)
++..+++.+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++
T Consensus 10 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 10 KVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred eEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEec
Confidence 3444445567999999999999999999999999999999999999987 9999999998765432 35699999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc-CCccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL-GLDIC 324 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~ 324 (1436)
|++.+++.+||+||+.++..... .++ ....++.+++.+ ++.+.
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~~------------~~~------------------------~~~~~~~~l~~~~~l~~~ 130 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFAE------------RDQ------------------------FQERIKWVYELFPRLHER 130 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhccC------------hhH------------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999987532110 000 001123445555 35543
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.++ .++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ .+. +||.++|+.+++.++
T Consensus 131 ~~~-----~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tiii~sH~~~~~~~~ 203 (237)
T PRK11614 131 RIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGM-TIFLVEQNANQALKL 203 (237)
T ss_pred HhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCC-EEEEEeCcHHHHHhh
Confidence 333 3457999999999998766 5999999999999999999999998764 344 455578888899999
Q ss_pred cCeEEEecCCeEEEecChHHHH
Q 038815 400 FDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++++|++|++++.|+++++.
T Consensus 204 ~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 204 ADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999988763
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=313.18 Aligned_cols=203 Identities=25% Similarity=0.329 Sum_probs=165.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++... ...+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56788888764110 011359999999999999999999999999999999999865 45799999998753
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 947 Q-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++..+++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23567899999986 3444 69999999875432 234455667789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+..|+.
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri 214 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYV 214 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEE
Confidence 689999999999999999999999999999999999999999999999877999999999984 567778883
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-32 Score=316.56 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEEcCccCCCCCc-------cceEEEEcCCC-
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFEP-------QRVAAYISQHD- 248 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 248 (1436)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 579999999999999999999999999999999999987422 238999999998765432 13699999997
Q ss_pred -CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 249 -NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 249 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.+.|.+||.+++....+.... ..+ .+....++.+++.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~~~------------------------~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------GNK------------------------KTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------CCH------------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 478999999998765432210 000 112234677899999975321
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+-+..++.|||||||||+||+|++ |++||||+|||..++.++++.|+++.+.. +++++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 124567789999999999988774 99999999999999999999999987643 45666688999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=307.81 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=164.5
Q ss_pred EEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc
Q 038815 868 TFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ 947 (1436)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~ 947 (1436)
+++|+++.+. ++.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677776542 2469999999999999999999999999999999999865 357999999976531
Q ss_pred ----------------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 948 ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 948 ----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
...++.++|++|+..+++..||.||+.+..... ......+..+.++++++.+|+.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 124567999999999999999999998753211 1123344456788999999998777665
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++....|+
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3679999999999999999999999999999999999999999999998875 899999999985 46667777
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-32 Score=311.91 Aligned_cols=209 Identities=25% Similarity=0.334 Sum_probs=167.1
Q ss_pred ccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC--C---CccceEEE
Q 038815 170 ILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE--F---EPQRVAAY 243 (1436)
Q Consensus 170 ~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~y 243 (1436)
++..+++ ++.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|
T Consensus 10 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 10 ELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred eEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEE
Confidence 3444443 457999999999999999999999999999999999999987 9999999998741 1 12357999
Q ss_pred EcCCCC-CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 244 ISQHDN-HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 244 v~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
++|++. .+...||+||+.++....+.. . .+....++.+++.+||.
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~ 132 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIE 132 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCh
Confidence 999863 345689999998864322110 0 01122356788999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..++ .++.||||||||++||+++ +|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.
T Consensus 133 ~~~~~-----~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvsH~~~~~~ 206 (283)
T PRK13636 133 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL-GLTIIIATHDIDIVP 206 (283)
T ss_pred hhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH
Confidence 76554 4567999999999998776 599999999999999999999999986533 445555788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++||++++|++|++++.|+.+++.
T Consensus 207 ~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 207 LYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999998765
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=313.79 Aligned_cols=203 Identities=22% Similarity=0.329 Sum_probs=165.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888887764110 012459999999999999999999999999999999999865 3579999999875
Q ss_pred cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038815 946 KQ-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPG 1015 (1436)
Q Consensus 946 ~~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++ .+++ .||+|++.|..... ..+.++..+.++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13567899999985 3444 59999998864332 234445566789999999996 566654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999976 4899999999975 46677888
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=301.16 Aligned_cols=190 Identities=26% Similarity=0.377 Sum_probs=156.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNHI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 251 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 56999999999999999999999999999999999999887 999999999875432 235699999999999
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.+.....+.. . .+....++.+++.+||++..++.
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 133 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------P------------------------REIRKRVPAALELVGLSHKHRAL--- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCC---
Confidence 9999999998865432110 0 00112346688899998766554
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
++.||||||||++||+++ +++|||||+|||+.++..+.+.|+++.+ . +++++.++|+.+++.+++|++++|
T Consensus 134 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 134 --PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred --hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999998776 4999999999999999999999999754 3 445666788888999999999999
Q ss_pred cCCeE
Q 038815 407 SDGLI 411 (1436)
Q Consensus 407 ~~G~i 411 (1436)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-32 Score=302.28 Aligned_cols=199 Identities=35% Similarity=0.555 Sum_probs=157.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD---SSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 253 (1436)
.+++|+|+|+++++||+++|+||||||||||+|+|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3679999999999999999999999999999999999998 65 99999999887543345679999999999999
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHH-HHHHcCCcccccccccCc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDY-YLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~ 332 (1436)
+||+||+.|+......... .+. ......+. .++.+++++..+ .
T Consensus 96 ~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~-----~ 139 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS-------SDA------------------------IRKKRVEDVLLRDLALTRIGG-----N 139 (226)
T ss_pred CcHHHHHHHHHHhhccccc-------chH------------------------HHHHHHHHHHHHhhcchhhhc-----c
Confidence 9999999987543321000 000 00011233 678888876544 3
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++..+.+.+++..+ .+.|++++.|++..++.+++|++++|+
T Consensus 140 ~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 4567999999999997765 5999999999999999999999998764 355666654444468999999999999
Q ss_pred CCeEEEec
Q 038815 408 DGLIVYLG 415 (1436)
Q Consensus 408 ~G~iv~~G 415 (1436)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=300.65 Aligned_cols=190 Identities=29% Similarity=0.402 Sum_probs=155.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 250 (1436)
++.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 457999999999999999999999999999999999999887 999999999876532 23568999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.++....+.. . ...+..++.+++.+||++..++.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 134 (214)
T TIGR02673 91 LPDRTVYENVALPLEVRGKK----------E------------------------REIQRRVGAALRQVGLEHKADAF-- 134 (214)
T ss_pred ccCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC--
Confidence 99999999999865432110 0 00112356788999997655544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|..+++.+++|++++
T Consensus 135 ---~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 135 ---PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEE
Confidence 457999999999998766 5999999999999999999999999754 34 4555577888899999999999
Q ss_pred ecCCe
Q 038815 406 LSDGL 410 (1436)
Q Consensus 406 L~~G~ 410 (1436)
|++|+
T Consensus 210 l~~G~ 214 (214)
T TIGR02673 210 LDDGR 214 (214)
T ss_pred ecCCC
Confidence 99985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-32 Score=302.07 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=155.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCC--CC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHD--NH 250 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 250 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999876533 235799999998 46
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLV 329 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 329 (1436)
++.+||+||+.+.....+... .+ .......+.+++.+||. ...+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~----------~~----------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS----------KK----------------------EARKEAVLLLLVGVGLPEEVLN--- 140 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc----------HH----------------------HHHHHHHHHHHHHCCCChhHhh---
Confidence 678999999988643321100 00 00011124578888985 3444
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|+
T Consensus 141 --~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 141 --RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred --CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 34557999999999998766 5999999999999999999999999865324 455557788888889999999
Q ss_pred EecCCeEEEec
Q 038815 405 LLSDGLIVYLG 415 (1436)
Q Consensus 405 lL~~G~iv~~G 415 (1436)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=273.28 Aligned_cols=180 Identities=26% Similarity=0.374 Sum_probs=154.8
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---c---c-ccceEEEeccCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---E---T-FTRISGYCEQNDI 962 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~Q~d~ 962 (1436)
+...||++|++.|++||-+||+|||||||||||-+|+|... +.+|+|.+.|.+... + . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45789999999999999999999999999999999999876 357999999987532 1 2 3468999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
+.|++|-.||+.....++..... .-.....+.|+.+||.+-.+-. +.+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 99999999999988777653222 2233467889999998766554 468999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
||||-+||.++...|.++|-.+.+ .|.|.|+++|||+
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 999999999999999999988865 5999999999986
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=320.48 Aligned_cols=194 Identities=25% Similarity=0.397 Sum_probs=162.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCCCCCCCCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 255 (1436)
|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999987 99999999887432 12467999999999999999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+||+.|+.+... .. +....++.+++.+||++..+.. +.
T Consensus 92 v~enl~~~~~~~~------------~~------------------------~~~~~~~~~l~~~gL~~~~~~~-----~~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------PS------------------------ERRISFERVIELLGIGHLLGRL-----PG 130 (354)
T ss_pred HHHHHHHHhhccC------------hh------------------------HHHHHHHHHHHHcCChhHhcCC-----hh
Confidence 9999998643110 00 0112356788999998766644 45
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 7999999999998776 4999999999999999999999999876434 455567888899999999999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=296.17 Aligned_cols=185 Identities=25% Similarity=0.334 Sum_probs=156.2
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 45677776542 3569999999999999999999999999999999999865 35799999997653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ..+++.++|++|+..+++..||+|++.+.... .. . ...++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 23567899999998888889999999876421 11 1 235788999999987666553 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999975
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-32 Score=306.90 Aligned_cols=206 Identities=23% Similarity=0.223 Sum_probs=163.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367788877653 246999999999999999999999999999999999986532 3589999999
Q ss_pred eecc-----cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKK-----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+.. ...+++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLN-DYPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhc-cChh
Confidence 8653 123456799999999999999999999886543211 11233344567889999998532111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCE
Confidence 8999999999999999999999999999999999999999999999865 799999999975 46667787
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=305.46 Aligned_cols=192 Identities=23% Similarity=0.235 Sum_probs=153.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cc-cceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TF-TRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~Q~d~~~~~l 967 (1436)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.....+.+|+|.++|.+.... .. +..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 569999999999999999999999999999999999741124579999999865321 12 23489999999999999
Q ss_pred CHHHHHHHhhhhcCCC----CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 968 TVYESLLYSAWLRLPP----EVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
|++|++.+........ ..+.++..+.++++++.++|. +..+..++ ..|||||||||+||++|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999998764322110 112233345688999999997 45555431 24999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFES-FDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~-FD~ 1088 (1436)
||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+. .|+
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~ 214 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY 214 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence 9999999999999999999999877899999999975 34444 476
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=305.33 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=165.3
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEEEE
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAAYI 244 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv 244 (1436)
..+++...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ .+.+|+|+++|.++... ..++.++|+
T Consensus 8 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 87 (247)
T TIGR00972 8 NLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMV 87 (247)
T ss_pred EEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEE
Confidence 33444456999999999999999999999999999999999999763 22389999999987542 124579999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-- 322 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-- 322 (1436)
+|++.+++ +||+||+.+..+.++... . .+....++.+++.+||.
T Consensus 88 ~q~~~~~~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~ 133 (247)
T TIGR00972 88 FQKPNPFP-MSIYDNIAYGPRLHGIKD---------K------------------------KELDEIVEESLKKAALWDE 133 (247)
T ss_pred ecCcccCC-CCHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCcc
Confidence 99988888 999999988654321000 0 00112356678999997
Q ss_pred --ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 323 --ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 323 --~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+..+ ..++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.+ + .+++.++|+..+
T Consensus 134 ~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~ 205 (247)
T TIGR00972 134 VKDRLH-----DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQ 205 (247)
T ss_pred hhhHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHH
Confidence 4444 34567999999999998766 5999999999999999999999998754 3 455667888889
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+++|+|++|++|++++.|+.+++.
T Consensus 206 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 206 AARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=305.87 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=161.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 367888877652 2469999999999999999999999999999999999865 3579999999865
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 038815 946 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lS 1020 (1436)
... ..++.++|++|+..+++.+||+||+.+..... ..++..+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 321 23567999999998899899999998754221 1122334567778887 476555543 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADR 206 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999999877999999999974 56677787
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=304.32 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=167.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQ 246 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q 246 (1436)
+..+.+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|
T Consensus 8 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 84 (242)
T TIGR03411 8 LSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84 (242)
T ss_pred eEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEecc
Confidence 334444567999999999999999999999999999999999999887 9999999988754432 246999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.++..... ..+....... ..+....++.+++.+|+++..+
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~ 138 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRDK--SVFASLFFRL------------------------SAEEKDRIEEVLETIGLADEAD 138 (242)
T ss_pred ccccCCCCCHHHHHHHhhhccc--cccccccccc------------------------HHHHHHHHHHHHHHcCCchhhc
Confidence 9999999999999988543110 0000000000 0011233567889999987665
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+. ++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.++||
T Consensus 139 ~~-----~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 139 RL-----AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCC
Confidence 44 457999999999998766 5999999999999999999999998754 4 455567888889999999
Q ss_pred eEEEecCCeEEEecChHHH
Q 038815 402 DIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++|++|++++.|+.+++
T Consensus 211 ~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 211 KVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEEEECCeEEeeCCHHHH
Confidence 9999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=311.80 Aligned_cols=200 Identities=20% Similarity=0.287 Sum_probs=163.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-------ccceEEEEcCCC--
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-------PQRVAAYISQHD-- 248 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 248 (1436)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 46999999999999999999999999999999999999987 999999999875421 245799999985
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 327 (1436)
.+++ .||.||+.|+....+.. . .+....++.+++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 3444 59999999864322110 0 01122356789999996 45543
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++.++.+.++++... .+++|+.++|+.+++.+.+|+
T Consensus 142 -----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 -----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred -----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 4567999999999998776 59999999999999999999999998653 355666688888999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-32 Score=311.92 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=166.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|+++.++ +++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 578899988653 12469999999999999999999999999999999999865 4579999999875
Q ss_pred c-----cccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 K-----QETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~-----~~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. ...+++.+||++|++. .....||+|++.+..... ..+.++..+.++++++.+||.+..+.. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 1235577999999863 234579999998864322 223444456789999999998877765 4679
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|+++. +-+..|+
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dr 211 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDN 211 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999999999875 8999999999764 5567887
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-32 Score=312.34 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=162.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCCC-
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHDN- 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 249 (1436)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999997 99999999987432 11356899999862
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-cccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 328 (1436)
.+..+||.||+.|+....+.. + .+....++.+++.+||+ ...++
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLISK- 141 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhC-
Confidence 344689999998864322110 0 01122356789999996 44444
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.++.|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 142 ----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4557999999999998776 4999999999999999999999998754 3556666889999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=298.72 Aligned_cols=196 Identities=23% Similarity=0.281 Sum_probs=163.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|++..+. ++.+|+++|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478888877542 2469999999999999999999999999999999999865 3579999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
.....++.++|++|++.+++.+|++|++.+...++. .. ..+.++++++.++|.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 533345579999999988888999999987654321 11 2235678899999987777663 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++||++++.+|++|+|||||+|||..+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~ 206 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTR 206 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcce
Confidence 999999999999999999999999999999999999998888999999999975 34444443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-32 Score=300.89 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=155.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 569999999999999999999999999999999999865 45899999998654322 257999999998888899999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
++.+....+. .+ ...+.++++.+||.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654432 11 23467899999998877765 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.++..+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~ 193 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADH 193 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 9999999999999877999999999975 46667777
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=304.68 Aligned_cols=200 Identities=27% Similarity=0.287 Sum_probs=163.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|++..++ ++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56677766542 2469999999999999999999999999999999999865 35799999997653
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 947 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.. ..++.++|++|++.+++.+||+||+.+....... .....++..+.++++++.+|+.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 21 1235699999999999999999999885432100 0011233445688999999998877665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 211 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADK 211 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999876 799999999975 46677787
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-32 Score=314.19 Aligned_cols=203 Identities=24% Similarity=0.309 Sum_probs=164.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++... .....+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67888888764210 0113599999999999999999999999999999999998653 4699999886431
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHH
Q 038815 947 ---------------------------QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIM 998 (1436)
Q Consensus 947 ---------------------------~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l 998 (1436)
....++.+|||+|++ ..+...||+|++.|..... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999998865432 234555566789999
Q ss_pred HHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 999 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 999 ~~l~L~-~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+.+||. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|.|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566655 46799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhhh
Q 038815 1078 PSIDIFESFDE 1088 (1436)
Q Consensus 1078 ps~~if~~FD~ 1088 (1436)
+. .+.+..|+
T Consensus 225 ~~-~~~~~adr 234 (305)
T PRK13651 225 LD-NVLEWTKR 234 (305)
T ss_pred HH-HHHHhCCE
Confidence 64 46677887
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=306.73 Aligned_cols=208 Identities=33% Similarity=0.441 Sum_probs=166.2
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQH 247 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 247 (1436)
+..+++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+
T Consensus 8 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (258)
T PRK13548 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQH 84 (258)
T ss_pred EEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccC
Confidence 334444567999999999999999999999999999999999999887 9999999988754332 3568999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++.+||+||+.++....+.. .+ +....++.+++.+||++..++
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~ 130 (258)
T PRK13548 85 SSLSFPFTVEEVVAMGRAPHGLS----------RA------------------------EDDALVAAALAQVDLAHLAGR 130 (258)
T ss_pred CcCCCCCCHHHHHHhhhcccCCC----------cH------------------------HHHHHHHHHHHHcCCHhHhcC
Confidence 88888899999998853211100 00 011234668889999875555
Q ss_pred cccCcccCCCCHHHHHHHhhhh-----------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 328 LVGDEMIRGISGGQKRRVTTGP-----------ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~-----------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
. +..|||||||||+||+ |.+++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++
T Consensus 131 ~-----~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~ 204 (258)
T PRK13548 131 D-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLA 204 (258)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHH
Confidence 4 4579999999999954 456999999999999999999999999863334 4555678888899
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|+|++|++|++++.|+.+++.
T Consensus 205 ~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 205 ARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999887653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=307.14 Aligned_cols=202 Identities=23% Similarity=0.251 Sum_probs=164.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 367788876542 3579999999999999999999999999999999999865 4579999999865
Q ss_pred ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccc
Q 038815 946 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP----------PEV--DSETRKMFIEEIMELVELNPLRQS 1009 (1436)
Q Consensus 946 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~----------~~~--~~~~~~~~v~~~l~~l~L~~~~~~ 1009 (1436)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+||.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 321 1 234589999999999999999999886432110 000 112234567889999999877666
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1010 ~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. ++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999875 899999999975 56667777
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=306.46 Aligned_cols=224 Identities=23% Similarity=0.266 Sum_probs=169.7
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..+++++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|+
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 9 SGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred eeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEe
Confidence 34444455567999999999999999999999999999999999999987 9999999998765332 2348899
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++....... +....... .+..+ ....+....++.+++.+||++.
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~~gl~~~ 146 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKT---GLFSGLLK-------TPAFR---------RAESEALDRAATWLERVGLLEH 146 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccc---hhhhhhcc-------ccccc---------cchhHHHHHHHHHHHhCChhhh
Confidence 99999999999999999864311000 00000000 00000 0000112235677889999765
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+. .++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+.. +++||.++|+.+++.++
T Consensus 147 ~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~ 220 (255)
T PRK11300 147 ANR-----QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGI 220 (255)
T ss_pred hhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHh
Confidence 554 4557999999999998766 599999999999999999999999876532 45566678888999999
Q ss_pred cCeEEEecCCeEEEecChHHH
Q 038815 400 FDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++++|++|++++.|+++++
T Consensus 221 ~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 221 SDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred CCEEEEEECCeEEecCCHHHH
Confidence 999999999999999998765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-32 Score=298.95 Aligned_cols=181 Identities=27% Similarity=0.319 Sum_probs=152.1
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||+||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999865 357999999986532 1234679999999999999999999987
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1055 (1436)
....+.. . .++.++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||..++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5432111 1 1233456889999999988777663 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1056 IVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1056 ~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+++.|++++++ |+|||+++|++. ++-+.+|+
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 198 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQR 198 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCE
Confidence 999999998764 899999999974 45556676
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=305.89 Aligned_cols=205 Identities=24% Similarity=0.322 Sum_probs=166.1
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC----------------
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------------- 236 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------------- 236 (1436)
.+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~ 84 (252)
T TIGR03005 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84 (252)
T ss_pred EEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHH
Confidence 3334457999999999999999999999999999999999999887 999999998875321
Q ss_pred ccceEEEEcCCCCCCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHH
Q 038815 237 PQRVAAYISQHDNHIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY 315 (1436)
Q Consensus 237 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1436)
.++.++|++|++.+++.+||.||+.++... .+. .. .+....++.+
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~----------~~------------------------~~~~~~~~~~ 130 (252)
T TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM----------AR------------------------AEAEKRAMEL 130 (252)
T ss_pred HhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCC----------CH------------------------HHHHHHHHHH
Confidence 145799999999999999999999875321 000 00 0011234567
Q ss_pred HHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 038815 316 LKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL 390 (1436)
Q Consensus 316 l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~ 390 (1436)
++.+|+++..+. .++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.+. .+++++.++
T Consensus 131 l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivs 204 (252)
T TIGR03005 131 LDMVGLADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVT 204 (252)
T ss_pred HHHcCChhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEe
Confidence 899999766553 4567999999999998766 49999999999999999999999987653 345666678
Q ss_pred cChhhHHhhcCeEEEecCCeEEEecChHHH
Q 038815 391 QPAPETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 391 q~~~~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
|+.+++.+++|++++|++|++++.|+.+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred CCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 888899999999999999999999988765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=306.19 Aligned_cols=200 Identities=23% Similarity=0.268 Sum_probs=161.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 578889887653 245999999999999999999999999999999999976532 2479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN----PLRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1013 (1436)
.+... ...++.+||++|+...++ .||+||+.+....+. .....+..+.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 76531 234667999999987774 899999988654321 112233456688889998874 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.||||||||++|||+|+.+|++|+|||||+|||+.+...+++.|+++++ +.|||+++|++. ++-+..|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 468999999999999999999999999999999999999999999999964 799999999986 45666777
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=307.46 Aligned_cols=201 Identities=25% Similarity=0.321 Sum_probs=164.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56777776542 3579999999999999999999999999999999999765 35799999998653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
. ...++.++|++|+..+++.+|+.|++.+....... .....+...+.++++++.++|.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23456799999998888889999999875321000 0111123345678999999998777765 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998877999999999986 57777887
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=310.57 Aligned_cols=198 Identities=23% Similarity=0.284 Sum_probs=163.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ +++.+|+|||++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 45667766542 12459999999999999999999999999999999999865 45799999998753
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 947 Q----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 947 ~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
. ...++.+||++|++. .+...||+||+.|..... ..+..+..+.++++++.++|.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999964 356689999998865432 2334444567889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++++.|.|||+++|++.. + +..|+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~ 204 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADR 204 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999999999999999999999999998779999999999864 4 55777
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=300.01 Aligned_cols=228 Identities=24% Similarity=0.304 Sum_probs=182.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCcccEEEEcCccCCCCCc-------cceEEEEcC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-S-SLKVSGRVTYNGHNMDEFEP-------QRVAAYISQ 246 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q 246 (1436)
+...+++|||+.+++||+++|+|.|||||||+.++|.|+++ + ...++|+|.|+|.++-.+.. .+.++||+|
T Consensus 16 g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ 95 (316)
T COG0444 16 GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ 95 (316)
T ss_pred ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEc
Confidence 35679999999999999999999999999999999999997 4 33568999999998755442 257999999
Q ss_pred CC--CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 247 HD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 247 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
++ .+.|.+||.+.+.-..+.+... . ...++...+.++|+.+||++-
T Consensus 96 ~p~~sLnPv~~Ig~Qi~E~l~~h~~~---------~-----------------------~~~ea~~~a~~~L~~Vgi~~~ 143 (316)
T COG0444 96 DPMTSLNPVMTIGDQIAEVLRLHGKG---------L-----------------------SKKEAKERAIELLELVGIPDP 143 (316)
T ss_pred CchhhcCChhhHHHHHHHHHHHhhcc---------h-----------------------hhHHHHHHHHHHHHHcCCCCH
Confidence 96 6889999999987665432110 0 011234456778999999864
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhh-----hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPA-----LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a-----~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.. +.+.++.+|||||||||.||.| .+|+.||||++||..++.+|++.|+++.+. .+++++.++|+..-+.++
T Consensus 144 ~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~ 220 (316)
T COG0444 144 ER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEI 220 (316)
T ss_pred HH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 32 4568899999999999999654 469999999999999999999999999874 567777799999999999
Q ss_pred cCeEEEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHHhhcC
Q 038815 400 FDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTS 446 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~~v~s 446 (1436)
||+|+||+.|+||+.|+.+++. +-|.+.-+...+..+..
T Consensus 221 aDri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 221 ADRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPR 259 (316)
T ss_pred cceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCcc
Confidence 9999999999999999999874 34444444444444433
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=300.52 Aligned_cols=192 Identities=24% Similarity=0.329 Sum_probs=157.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 250 (1436)
.+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 457999999999999999999999999999999999999887 999999999875432 23578999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+.....+.. . ++....++.+++.+||.+..+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 133 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIAGAS----------G------------------------DDIRRRVSAALDKVGLLDKAKN--- 133 (222)
T ss_pred cccccHHHHHHhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhC---
Confidence 89999999998864332110 0 0011224567889999765554
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +++++.++|+.+++...+|+|++
T Consensus 134 --~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 209 (222)
T PRK10908 134 --FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLT 209 (222)
T ss_pred --CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4457999999999998776 4999999999999999999999998754 2 45566688888999999999999
Q ss_pred ecCCeEE
Q 038815 406 LSDGLIV 412 (1436)
Q Consensus 406 L~~G~iv 412 (1436)
|++|+++
T Consensus 210 l~~G~i~ 216 (222)
T PRK10908 210 LSDGHLH 216 (222)
T ss_pred EECCEEc
Confidence 9999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=313.83 Aligned_cols=202 Identities=21% Similarity=0.263 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCC--C
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHD--N 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 249 (1436)
+.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999886 9999999998765432 35799999997 5
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-ccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~ 328 (1436)
+.|.+||.+++....+.... ..+ .+....+.++++.+||+. ..+
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gL~~~~~~-- 149 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSA------------------------AERREKALAMMAKVGLRPEHYD-- 149 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCH------------------------HHHHHHHHHHHHHCCCChHHhc--
Confidence 88999999999875443210 000 011234577899999963 334
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+++.|||||||||+||+|+ +|++||||+|||..++.++++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 150 ---~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 ---RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45678999999999998877 499999999999999999999999986643 456666899999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=306.93 Aligned_cols=199 Identities=25% Similarity=0.326 Sum_probs=163.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+.+++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56777776543 3569999999999999999999999999999999999865 45799999997643
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
. ...++.++|++|+..+++.+||+|++.+..... ....++..+.++++++.++|.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 234467999999988878899999998754321 1122233456789999999988777663 5799999
Q ss_pred HHHHHHHHHHh------hCCCcceecCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1024 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1024 rkRl~ia~~L~------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
||||+||++|+ .+|++|+|||||+|||+.+...+.+.|++++ +.|.|||+++|++. ++.+..|+.
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i 211 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRI 211 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEE
Confidence 99999999999 5999999999999999999999999999997 56999999999975 466677873
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=299.90 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=153.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHDNH 250 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 250 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 56999999999999999999999999999999999999987 9999999998755432 1469999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.+........ . .+....+..+++.+||++..+.
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 137 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------V------------------------KEAKERAYEMLEKVGLEHRINH--- 137 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhC---
Confidence 99999999998854321100 0 0011234568889999865554
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
.++.|||||||||+||+++ +++|||||+|||..++..+.+.|+++++..+.|+ +.++|+..++. .+|+|++
T Consensus 138 --~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti-i~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 138 --RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF-LVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred --ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHh-hcCEEEE
Confidence 3457999999999998766 5999999999999999999999998865434454 55667777765 4799999
Q ss_pred ecCCeEE
Q 038815 406 LSDGLIV 412 (1436)
Q Consensus 406 L~~G~iv 412 (1436)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=304.37 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=166.7
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCCC---ccceEEEEc
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFE---PQRVAAYIS 245 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~ 245 (1436)
+..+.++.++|+|+|++|++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++
T Consensus 9 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 88 (250)
T PRK14247 9 LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVF 88 (250)
T ss_pred eEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEe
Confidence 334444567999999999999999999999999999999999998741 124999999999875432 235789999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++.+||+||+.++.+..+... .+ .+....++.+++.+||.+..
T Consensus 89 q~~~~~~~~tv~enl~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~ 136 (250)
T PRK14247 89 QIPNPIPNLSIFENVALGLKLNRLVK--------SK------------------------KELQERVRWALEKAQLWDEV 136 (250)
T ss_pred ccCccCCCCcHHHHHHHHHHhccccC--------CH------------------------HHHHHHHHHHHHHcCCCcch
Confidence 99988999999999998653221000 00 01122356688889986421
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+.. -+..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++
T Consensus 137 ~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~ 212 (250)
T PRK14247 137 KDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--D-MTIVLVTHFPQQAARIS 212 (250)
T ss_pred hhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhc
Confidence 111 1345668999999999998766 5999999999999999999999998742 4 55666788888899999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+|++|++|++++.|+.+++.
T Consensus 213 d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 213 DYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CEEEEEECCeEEEECCHHHHH
Confidence 999999999999999988763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=298.87 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=166.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+... .+.+.+|+|+|+.+++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 4567777654310 012579999999999999999999999999999999999765 45799999998653
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. ...++.++|++|++.+++..|+.||+.+...... ....++..+.++++++.++|.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1245789999999988888999999988654321 123444556789999999998777765 36799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+..|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~ 210 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 3466665
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-32 Score=276.20 Aligned_cols=199 Identities=27% Similarity=0.393 Sum_probs=170.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
+.+|+|||+.|.+||.+.++||||||||||||+++|..+|. .|+|.+||++++. |...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 55999999999999999999999999999999999999997 9999999998754 334568999999999999999
Q ss_pred HHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 258 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
+|++|+.+++|+++. +...++...+...||+...+ +++-+|
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~-----~~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEH-----KYIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccc-----cceEee
Confidence 999999999987531 12234567889999987655 456689
Q ss_pred CHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--Ce
Q 038815 338 SGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GL 410 (1436)
Q Consensus 338 SGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~ 410 (1436)
||||||||.||||+. |+||||.++||.-+++++...|-++.+..++. +..++|+.+|+.-+++++++|+. ||
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~-~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ-VLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe-EEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999884 99999999999999999999999887765554 45589999999999999999985 79
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
|+..-+.+-..
T Consensus 213 vv~~~~~df~r 223 (259)
T COG4525 213 VVERLPLDFAR 223 (259)
T ss_pred eeEecCCCHHH
Confidence 99877665433
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=302.54 Aligned_cols=188 Identities=30% Similarity=0.376 Sum_probs=157.6
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEec-cCCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCE-QNDIHSPL 966 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~d~~~~~ 966 (1436)
+.+.+|+|+|+.+++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 44679999999999999999999999999999999999765 357999999976422 23456799997 55677788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
+||+|++.+...++. ...++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654431 223344556788999999988877764 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 223 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARR 223 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999764 899999999985 55666676
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=299.75 Aligned_cols=197 Identities=26% Similarity=0.336 Sum_probs=162.0
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIG 252 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 252 (1436)
.+.+++++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 8 KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYE 83 (223)
T ss_pred EEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccc
Confidence 3334467999999999999999999999999999999999999887 999999998765322 357899999998899
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+||+||+.+.....+.. ...++.+++.+||++..+..
T Consensus 84 ~~t~~~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~---- 121 (223)
T TIGR03740 84 NLTARENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKK---- 121 (223)
T ss_pred cCCHHHHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhh----
Confidence 999999998754322100 01245678899998765544
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++.||||||||++||++. +++|||||+|||+.++..+.+.|+++.+ .+. +|+.++|+..++.+.+|+|++|+
T Consensus 122 -~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~-tiii~sH~~~~~~~~~d~i~~l~ 198 (223)
T TIGR03740 122 -AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGI-TVILSSHILSEVQQLADHIGIIS 198 (223)
T ss_pred -HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCC-EEEEEcCCHHHHHHhcCEEEEEe
Confidence 457999999999998766 5999999999999999999999998754 344 45557778888999999999999
Q ss_pred CCeEEEecChH
Q 038815 408 DGLIVYLGPRE 418 (1436)
Q Consensus 408 ~G~iv~~G~~~ 418 (1436)
+|++++.|++.
T Consensus 199 ~g~i~~~~~~~ 209 (223)
T TIGR03740 199 EGVLGYQGKIN 209 (223)
T ss_pred CCEEEEecChh
Confidence 99999999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=308.61 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=162.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCCC-CC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHDN-HI 251 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~-~~ 251 (1436)
.+.+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF 90 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhc
Confidence 346999999999999999999999999999999999999887 9999999998754321 356999999975 46
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
..+||.||+.|.....+.. + .+....++.+++.+||++..++.
T Consensus 91 ~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~--- 133 (274)
T PRK13644 91 VGRTVEEDLAFGPENLCLP----------P------------------------IEIRKRVDRALAEIGLEKYRHRS--- 133 (274)
T ss_pred ccchHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCC---
Confidence 7789999998865322110 0 01112356788999998766654
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++ ..+|+|++|
T Consensus 134 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l 208 (274)
T PRK13644 134 --PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVM 208 (274)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEE
Confidence 457999999999998776 4999999999999999999999998764 3 44555577777777 569999999
Q ss_pred cCCeEEEecChHHHH
Q 038815 407 SDGLIVYLGPRELVL 421 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~ 421 (1436)
++|++++.|+.+++.
T Consensus 209 ~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 209 DRGKIVLEGEPENVL 223 (274)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-32 Score=310.60 Aligned_cols=200 Identities=26% Similarity=0.290 Sum_probs=166.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-+.++|+++.+.. ..+.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3678888876531 12459999999999999999999999999999999999866 3579999999875
Q ss_pred cc---ccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.+||++|+. ..++..||.||+.+..... ..+.++..+.++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 23456799999997 3566789999998865432 1234445567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + +..|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~ 209 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCE
Confidence 9999999999999999999999999999999999999999999876 8999999999864 4 35787
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=305.74 Aligned_cols=209 Identities=26% Similarity=0.316 Sum_probs=167.2
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--------------
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------------- 235 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------------- 235 (1436)
++..+++++++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|+++|.++...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred eeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchH
Confidence 4444445567999999999999999999999999999999999999887 99999999876421
Q ss_pred --CccceEEEEcCCCCCCCCCCHHHHHHhhhh-hccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHH
Q 038815 236 --EPQRVAAYISQHDNHIGEMTVRETLAFSAR-CQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLT 312 (1436)
Q Consensus 236 --~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1436)
..++.++|++|++.+++.+||+||+.++.. ..+. .+ .+....+
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~----------~~------------------------~~~~~~~ 132 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SK------------------------QEARERA 132 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCC----------CH------------------------HHHHHHH
Confidence 113578999999999999999999987532 1110 00 0112235
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 038815 313 DYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387 (1436)
Q Consensus 313 ~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii 387 (1436)
..+++.+||.+.. .++.++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++++ . +.+|+
T Consensus 133 ~~~l~~~gl~~~~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tii 206 (257)
T PRK10619 133 VKYLAKVGIDERA----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMV 206 (257)
T ss_pred HHHHHHcCCChhh----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEE
Confidence 6688999997642 1234568999999999998776 4999999999999999999999998764 3 45555
Q ss_pred EEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 388 SLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 388 ~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++|+..++.+++|+|++|++|++++.|+.+++.
T Consensus 207 ivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 6788888999999999999999999999987753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=307.17 Aligned_cols=206 Identities=27% Similarity=0.338 Sum_probs=164.1
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC--C---CccceEEEEcC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE--F---EPQRVAAYISQ 246 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q 246 (1436)
..+++++.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|
T Consensus 8 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 84 (271)
T PRK13638 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQ 84 (271)
T ss_pred EEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEee
Confidence 33444456999999999999999999999999999999999999987 9999999998742 1 11356999999
Q ss_pred CCC-CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 247 HDN-HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 247 ~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
++. .+...|+.||+.+.....+.. . .+....++.+++.+||++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~ 130 (271)
T PRK13638 85 DPEQQIFYTDIDSDIAFSLRNLGVP----------E------------------------AEITRRVDEALTLVDAQHFR 130 (271)
T ss_pred ChhhccccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHh
Confidence 864 345668999998764322110 0 00112346678899998766
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++. +..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++
T Consensus 131 ~~~-----~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 131 HQP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEIS 203 (271)
T ss_pred cCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhC
Confidence 544 457999999999998766 5999999999999999999999999764 34 45666788888999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|++++|++|++++.|+.+++.
T Consensus 204 d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 204 DAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-32 Score=343.31 Aligned_cols=203 Identities=26% Similarity=0.367 Sum_probs=161.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++.+... ++.++||+|++.+|.
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~- 436 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH- 436 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-
Confidence 457999999999999999999999999999999999999 76 9999999999887654 468999999997776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.|++|||.++.. +.+.+++.++....+ .+..++ .|++..||.||+.
T Consensus 437 ~TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i~--~lp~G~dT~vge~- 482 (588)
T PRK11174 437 GTLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFLP--LLPQGLDTPIGDQ- 482 (588)
T ss_pred cCHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHHH--hcccccccccccC-
Confidence 599999998521 111112222211111 122222 3667789999976
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...||||||||++||||+ +++||||||+||+.++..|.+.|++.. .++|+|+..|++ +..+.+|+|++|++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQD 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeC
Confidence 457999999999999887 499999999999999999999998864 356666654444 55678999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+.+++.+
T Consensus 559 G~i~e~G~~~eL~~ 572 (588)
T PRK11174 559 GQIVQQGDYAELSQ 572 (588)
T ss_pred CeEeecCCHHHHHh
Confidence 99999999998863
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=303.46 Aligned_cols=215 Identities=25% Similarity=0.312 Sum_probs=164.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+..+++++++|+|+|+.|++||+++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|+
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (243)
T TIGR01978 6 LHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLA 82 (243)
T ss_pred EEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEee
Confidence 333444567999999999999999999999999999999999995 565 9999999998755432 2348999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI- 323 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 323 (1436)
+|++..++.+||+|++.+.......... .... ...+....++.+++.+||++
T Consensus 83 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~ 135 (243)
T TIGR01978 83 FQYPEEIPGVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEE 135 (243)
T ss_pred eccccccCCcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchh
Confidence 9999999999999999886432210000 0000 00011223567889999973
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..+..++ ..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++..
T Consensus 136 ~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 136 FLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNY 209 (243)
T ss_pred hcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHh
Confidence 4443332 24999999999998766 5999999999999999999999999854 34 455557788888888
Q ss_pred h-cCeEEEecCCeEEEecChHHHH
Q 038815 399 L-FDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 l-fD~vilL~~G~iv~~G~~~~~~ 421 (1436)
. +|++++|++|++++.|+++++.
T Consensus 210 ~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 210 IKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred hcCCeEEEEeCCEEEEecCHHHhc
Confidence 8 8999999999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=292.53 Aligned_cols=176 Identities=59% Similarity=0.897 Sum_probs=149.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++... .++.+|+|+|+.+++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 467888887664210 12569999999999999999999999999999999999743224689999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ..+++.++|++|++.+++.+||+|++.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345677999999998899999999998642110 49999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|++..++.+.+|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~ 178 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE
Confidence 999999999999999999999999999999999999998877999999999987667777887
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=310.92 Aligned_cols=203 Identities=25% Similarity=0.300 Sum_probs=164.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+.... ...+.+|+|||+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56778877653100 001459999999999999999999999999999999999866 35899999998653
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038815 947 Q-------ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1017 (1436)
. ...++.+||++|++. .+..+||+|++.|....+ ....++..++++++++.+||. +..+.. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 1 224567999999862 233579999998765432 223445556789999999997 566665 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|.|||+++|++. ++.+..|+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999777999999999975 56677787
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=343.72 Aligned_cols=188 Identities=28% Similarity=0.426 Sum_probs=158.4
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|++|.++. ++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46999999998741 2349999999999999999999999999999999999876 458999999987
Q ss_pred cc--cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 038815 945 KK--QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 1015 (1436)
Q Consensus 945 ~~--~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1015 (1436)
.. ...+++.++||+|++.+++ -|++||+.++. | +.++ +.++++++..++.+. .||.+|..|
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 54 3456788999999999886 59999998751 1 2222 346677887777543 478888754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5799999999999999999999999999999999999999999999863 489999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=320.61 Aligned_cols=187 Identities=24% Similarity=0.262 Sum_probs=160.7
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---c----ccceEEEeccCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---T----FTRISGYCEQNDIH 963 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~d~~ 963 (1436)
...+|+|+|+.|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.... . .++.+|||+|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999875 3579999999875321 1 23579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
++.+||+||+.|....+. .+.++..+.++++++.+||.+..+.. ++.|||||||||+|||+|+.+|++|+||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 23344556788999999999887776 3679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.++..+++.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999875 4899999999975 56777888
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=297.77 Aligned_cols=189 Identities=30% Similarity=0.443 Sum_probs=153.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 253 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 57999999999999999999999999999999999999887 9999999988754322 356899999974 4678
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+||+.++....+.. . .+....++.+++.+||++..+. .
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 131 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E------------------------EEIEERVEEALELVGLEGLRDR-----S 131 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCcHhhhcC-----C
Confidence 99999998754322100 0 0011234667889999765554 3
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|+|++|++
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 457999999999998776 59999999999999999999999998653 45566678888899999999999999
Q ss_pred Ce
Q 038815 409 GL 410 (1436)
Q Consensus 409 G~ 410 (1436)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=308.39 Aligned_cols=200 Identities=24% Similarity=0.300 Sum_probs=165.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++. +++.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5788888876531 12469999999999999999999999999999999999865 3579999999876
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ..+++.+||++|++. .++.+||+||+.+..... ..+.++..+.++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 42 235677999999963 566789999998764322 1233444567899999999988777763 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++.. + +..|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 211 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADK 211 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCE
Confidence 9999999999999999999999999999999999999999999876 5899999999864 3 35676
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=294.76 Aligned_cols=178 Identities=44% Similarity=0.783 Sum_probs=150.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 253 (1436)
.++.+|+|+|+++++||+++|+|||||||||||++|+|.++|....+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 4567999999999999999999999999999999999999831123999999999876532 24579999999999999
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+||+.++++.. .++.
T Consensus 98 ~tv~~~l~~~~~~~--------------------------------------------------------------~~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK--------------------------------------------------------------GNEF 115 (202)
T ss_pred CcHHHHHhhhhhhc--------------------------------------------------------------cccc
Confidence 99999998743110 1233
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+..||||||||++||+++ +++|||||+|||+.++..+.+.++++.+..+.|+++++||+.+++.+++|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 457999999999998766 599999999999999999999999986544567778788888899999999999999
Q ss_pred CeEEEec
Q 038815 409 GLIVYLG 415 (1436)
Q Consensus 409 G~iv~~G 415 (1436)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=308.57 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=164.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. +++.+|+|||+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 56778877653 12359999999999999999999999999999999999865 45899999998653
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 947 Q---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
. ...++.+|||+|++. .+...||.|++.+..... ..+.++..+.++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 234567899999963 334579999998765322 2344445567889999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+..|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~dr 207 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADY 207 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999875 899999999976 57777888
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=304.78 Aligned_cols=201 Identities=20% Similarity=0.253 Sum_probs=163.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||++||+|||||||||||++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367788877653 246999999999999999999999999999999999976432 2589999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.+||++|+..+++.+||+||+.+....+. ..+.++.++.++++++.++|.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 86521 2345679999999989999999999988654331 1123344557889999999852 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~ 216 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQ 216 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999864 689999999975 45666777
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=305.13 Aligned_cols=212 Identities=22% Similarity=0.294 Sum_probs=163.5
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++++.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++
T Consensus 17 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 96 (258)
T PRK14268 17 NLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVG 96 (258)
T ss_pred eeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEE
Confidence 34444445679999999999999999999999999999999999987510 1399999999886432 1245699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ +||+||+.|+.+..+.. .+ +....++.+++.+|+.
T Consensus 97 ~v~q~~~~~~-~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~ 141 (258)
T PRK14268 97 MVFQKPNPFP-MSIYDNVAYGPRIHGAN----------KK------------------------DLDGVVENALRSAALW 141 (258)
T ss_pred EEecCCccCc-ccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCC
Confidence 9999988787 89999999865332110 00 0112345678888884
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
...... -+..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.
T Consensus 142 ~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~ 217 (258)
T PRK14268 142 DETSDR-LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAA 217 (258)
T ss_pred cchhhh-hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHH
Confidence 211111 1234567999999999998776 4999999999999999999999998742 4 55566788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
+++|+|++|++|++++.|+++++
T Consensus 218 ~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 218 RISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999998776
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=312.51 Aligned_cols=214 Identities=21% Similarity=0.215 Sum_probs=169.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|++..++............+...+|+|||+.|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 57888998776532110000001123579999999999999999999999999999999999875 3579999999875
Q ss_pred ccc------cccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 946 KQE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
... .+++.++||+|+. .++|.+||.|++.+......+ ..+.++.++.++++++.++|. +..+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 321 2456799999997 578899999999886443221 234556667889999999995 344544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|++||||+|||..++..|++.|+++.++ |.|||+++|++. .+.+.-|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 689999999999999999999999999999999999999999999999764 999999999974 45556677
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=301.64 Aligned_cols=183 Identities=26% Similarity=0.356 Sum_probs=153.6
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|+..+++.+||+|++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999865 35799999998654321 22489999999999999999998
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
+......+ ..+.++..+.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 223344455688999999998777765 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1055 AIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1055 ~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 184 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDR 184 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999998764 899999999985 56777887
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=307.22 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=165.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|++..+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478888876552 2469999999999999999999999999999999999765 3579999999764
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ..+++.++|++|+..+++.+||.|++.+....... .........+.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321110 00111223456789999999987777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i 218 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYL 218 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 566777873
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=298.31 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=155.5
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC-
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI- 251 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~- 251 (1436)
.++++.++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+.
T Consensus 7 ~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDR 81 (213)
T ss_pred eEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEecccccccc
Confidence 3334457999999999999999999999999999999999999887 999999998764 2345799999997653
Q ss_pred -CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 252 -GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 252 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
..+||+||+.++...... .+. . . . .+....++.+++.+||++..++.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~--~~~---~-~------------~------------~~~~~~~~~~l~~~~l~~~~~~~-- 129 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKG--LFR---R-L------------S------------KADKAKVDEALERVGLSELADRQ-- 129 (213)
T ss_pred CCCCcHHHHHHhccccccc--ccc---C-C------------C------------HHHHHHHHHHHHHcCCHHHHhCC--
Confidence 348999999885421100 000 0 0 0 00112356788999998655544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ . ++++|.++|+.+++.+++|+|++
T Consensus 130 ---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 130 ---IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 457999999999998766 5999999999999999999999999865 3 45566678888899999999999
Q ss_pred ecCCeEEEec
Q 038815 406 LSDGLIVYLG 415 (1436)
Q Consensus 406 L~~G~iv~~G 415 (1436)
|++| +++.|
T Consensus 205 l~~~-~~~~g 213 (213)
T cd03235 205 LNRT-VVASG 213 (213)
T ss_pred EcCc-EeecC
Confidence 9886 56554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=302.25 Aligned_cols=201 Identities=24% Similarity=0.395 Sum_probs=162.6
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHD 248 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d 248 (1436)
..++++..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 10 ~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 10 SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred EEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 33444567999999999999999999999999999999999999887 999999998875432 245789999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 327 (1436)
.+++ .||+||+.+.....+ . ....++.+++.+||+ +..+
T Consensus 87 ~~~~-~tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~- 126 (241)
T PRK14250 87 HLFE-GTVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYAT- 126 (241)
T ss_pred hhch-hhHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhh-
Confidence 7776 699999987432110 0 001245678889996 3333
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|+
T Consensus 127 ----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 127 ----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCE
Confidence 34567999999999998766 5999999999999999999999998765334 4556678888899999999
Q ss_pred EEEecCCeEEEecChHHH
Q 038815 403 IILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~ 420 (1436)
|++|++|+++..|+++++
T Consensus 202 i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 202 TAFLNKGILVEYAKTYDF 219 (241)
T ss_pred EEEEeCCEEEEeCCHHHH
Confidence 999999999999998775
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=307.56 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 253 (1436)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 45999999999999999999999999999999999999987 9999999998754322 356899999963 3446
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||.||+.+.....+.. . .+....++.+++.+||.+..++.
T Consensus 94 ~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (277)
T PRK13652 94 PTVEQDIAFGPINLGLD----------E------------------------ETVAHRVSSALHMLGLEELRDRV----- 134 (277)
T ss_pred ccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCC-----
Confidence 89999998764322110 0 01122356789999998766654
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.||||||||++||+++ +++|||||+|||+.++..+.+.++++.+.. +++|+.++|+.+++.+.+|+|++|++
T Consensus 135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-GMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 457999999999998776 599999999999999999999999986532 45566678888899999999999999
Q ss_pred CeEEEecChHHHH
Q 038815 409 GLIVYLGPRELVL 421 (1436)
Q Consensus 409 G~iv~~G~~~~~~ 421 (1436)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998874
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=303.60 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=162.5
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCeeEEEEEE
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSITI 940 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~---~~~~~G~i~i 940 (1436)
|..+.++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|... ..+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34688899987653 2469999999999999999999999999999999999642 1135799999
Q ss_pred cCeeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 941 SGYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 941 ~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
+|.+... ...++.++|++|+..+++ .||+||+.+....+.. ...+...+.++++++.+++.+........ .
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-S 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-C
Confidence 9986532 134567999999988887 5999999886543311 12233345678899999986422112211 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++-+..|+
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCE
Confidence 468999999999999999999999999999999999999999999999854 799999999975 45566777
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=305.84 Aligned_cols=208 Identities=24% Similarity=0.297 Sum_probs=163.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+......+ ..+++.+|+|+|+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56778877653210000 0113579999999999999999999999999999999999865 45799999998653
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038815 947 QE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1017 (1436)
.. ..++.+||++|+. .+.+..||+|++.+..... ......+..+.++++++.++|. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 4667899999997654321 1122334456688999999996 555654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. |.|||+++|++. .+.+..|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 79999999999999999999999999999999999999999999998875 899999999975 45566777
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=286.79 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=182.9
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCC
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 247 (1436)
++.++++..++.+++|+|+.++||+|++++|||||||||.+++|.|.++|+ +|+|+++|.+++... +..+||.|++
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEE 80 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEE 80 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhh
Confidence 345677888899999999999999999999999999999999999999998 999999999876543 3569999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
--++|.+||.|.|.|-++++|... +++....+.+|+.+++......
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~ 126 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTK 126 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccc
Confidence 999999999999999999987532 1234456889999999876553
Q ss_pred cccCcccCCCCHHHHHHHhhh-----hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTG-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia-----~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..||.|.+|++-+- .|.+++||||+|||||.+++.+-+.++++.. .+++|+..+|-++.+.++||+
T Consensus 127 -----kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 127 -----KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred -----hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhh
Confidence 4567999999999883 4556999999999999999999999999865 355556678889999999999
Q ss_pred EEEecCCeEEEecChHHHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLDFF 424 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~~F 424 (1436)
+++|++|+.|.+|+.++++.-|
T Consensus 200 llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 200 LLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hheecCCceEEeccHHHHHHhc
Confidence 9999999999999999998755
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=309.13 Aligned_cols=202 Identities=26% Similarity=0.321 Sum_probs=161.8
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++... ...+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 66788877653110 001359999999999999999999999999999999999865 35799999998653
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 038815 947 Q-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 1016 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1016 (1436)
. ...++.+||++|+. .+++ .||+|++.+....+ ..+.++..+.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999986 3444 69999998764332 1233444556889999999973 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+..|+
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999877999999999975 55566787
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=307.68 Aligned_cols=203 Identities=22% Similarity=0.272 Sum_probs=166.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++ ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 577888887653 3569999999999999999999999999999999999865 3579999999865
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.+||++|+...++..||+|++.+...-..+ .....+...+.++++++.++|.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23446799999999888889999999875211110 0011123345688999999998776765 467999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+.
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i 214 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHL 214 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 577788873
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=298.80 Aligned_cols=187 Identities=29% Similarity=0.397 Sum_probs=159.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-cccceEEEeccCCCCCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-TFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+.+|+|+|+.++||++++|+|+||||||||+++|+|..+ +..|+|.++|.+.... ..++.+||++|+...++.+|++
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 469999999999999999999999999999999999865 3579999999865431 2346799999999988889999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
|++.+....+. .......+.++++++.+|+.+..+..+ ..||+|||||++||++|+.+|++++|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654432 223334456789999999988777653 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1051 ARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
+.++..+.+.|++++++ |+|||+++|++. ++.+..|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i 201 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRI 201 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEE
Confidence 99999999999998765 899999999984 467778883
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=302.55 Aligned_cols=204 Identities=23% Similarity=0.301 Sum_probs=161.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~---~~~~~~G~i~i~g 942 (1436)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|.. +..+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 466788876542 256999999999999999999999999999999999952 2112479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.++++++.++|.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87532 234567999999988776 6999999876543311 12233345678999999986532111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 899999999999999999999999999999999999999999999985 4899999999986 46677888
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=298.39 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=167.5
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHI 251 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 251 (1436)
.+.+.+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+... ++.++|++|++..+
T Consensus 8 ~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 8 KFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred EEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccC
Confidence 3334457999999999999999999999999999999999999987 9999999998765332 46799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
+.+||+||+.++....+... ......++.+++.+||++..++.
T Consensus 85 ~~~t~~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 127 (232)
T cd03300 85 PHLTVFENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRK--- 127 (232)
T ss_pred CCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC---
Confidence 99999999988654321100 00112356788999998766644
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++....+.| |+.++|...++.+++|++++|
T Consensus 128 --~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 128 --PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEE
Confidence 457999999999997766 599999999999999999999999986533444 455677788899999999999
Q ss_pred cCCeEEEecChHHHH
Q 038815 407 SDGLIVYLGPRELVL 421 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~ 421 (1436)
++|++++.|+.+++.
T Consensus 205 ~~G~~~~~~~~~~~~ 219 (232)
T cd03300 205 NKGKIQQIGTPEEIY 219 (232)
T ss_pred ECCEEEecCCHHHHH
Confidence 999999999877653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=296.05 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=155.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999998754432 357999999999999999999998
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
++..... . ..+ ..+..++.+++.+||++..++. +..|||||
T Consensus 93 ~~~~~~~-~--------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-K--------LTA-------------------------EDRQAIEVALARVGLAGLEKRL-----PGELSGGE 133 (211)
T ss_pred ccccccc-C--------ccH-------------------------HHHHHHHHHHHHcCCHHHHhCC-----cccCCHHH
Confidence 7532110 0 000 0112356788999998766544 45799999
Q ss_pred HHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 038815 342 KRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 342 rkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G 415 (1436)
||||+||+++ +++|||||+|||..++..+.+.|+++++.. +.+++.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999998766 599999999999999999999999886533 445555888899999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=302.75 Aligned_cols=205 Identities=27% Similarity=0.318 Sum_probs=163.8
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC------C---CccceEE
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE------F---EPQRVAA 242 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~ 242 (1436)
..+++++.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++.. . ..++.++
T Consensus 9 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~ 85 (242)
T PRK11124 9 NCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVG 85 (242)
T ss_pred EEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheE
Confidence 33344457999999999999999999999999999999999999887 9999999987621 1 1135689
Q ss_pred EEcCCCCCCCCCCHHHHHHhhh-hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 243 YISQHDNHIGEMTVRETLAFSA-RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
|++|++.+++.+||.||+.+.. ...+.. . .+....++.+++.+||
T Consensus 86 ~~~q~~~~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl 131 (242)
T PRK11124 86 MVFQQYNLWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRL 131 (242)
T ss_pred EEecCccccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999997532 111100 0 0011235678899999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. ++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.. . +++++.++|+..++
T Consensus 132 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~ 204 (242)
T PRK11124 132 KPYADRF-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVA 204 (242)
T ss_pred hhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH
Confidence 8655543 457999999999998776 4999999999999999999999998754 3 44556678888899
Q ss_pred HhhcCeEEEecCCeEEEecChHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+++|++++|++|++++.|+.++.
T Consensus 205 ~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 205 RKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999987654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=304.98 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=163.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCC--
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHD-- 248 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 248 (1436)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 357999999999999999999999999999999999999987 9999999998764322 35699999986
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 327 (1436)
.+++.+||+||+.+...... .... .+....++.+++.+||+ +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~---------~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT---------SLDE------------------------SEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc---------CCCH------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 46678999999987542110 0000 00112356788999995 44443
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++.|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+.+.+++|+
T Consensus 147 -----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 -----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcE
Confidence 4567999999999998776 499999999999999999999999986533 45566678888999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=303.04 Aligned_cols=213 Identities=25% Similarity=0.321 Sum_probs=162.9
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++++.+|+|+|+.|++||+++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 90 (253)
T PRK14242 11 GLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVG 90 (253)
T ss_pred eeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEE
Confidence 34444445679999999999999999999999999999999999864 1001389999999887531 1245799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ .||+||+.++....+... +. .....++.+++.+||.
T Consensus 91 ~v~q~~~~~~-~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~ 136 (253)
T PRK14242 91 MVFQKPNPFP-KSIFENVAYGLRVNGVKD---------KA------------------------YLAERVERSLRHAALW 136 (253)
T ss_pred EEecCCCCCc-CcHHHHHHHHHHHcCCCC---------HH------------------------HHHHHHHHHHHHcCCc
Confidence 9999988887 599999998654322100 00 0112245677888885
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+...+.. +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.
T Consensus 137 ~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~ 212 (253)
T PRK14242 137 DEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAA 212 (253)
T ss_pred hhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHH
Confidence 4221111 345678999999999998766 5999999999999999999999998742 4 45556788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
+++|+|++|++|++++.|+.+++
T Consensus 213 ~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 213 RVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999988765
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=305.79 Aligned_cols=212 Identities=24% Similarity=0.328 Sum_probs=167.3
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQ 246 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q 246 (1436)
++..+.+++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|
T Consensus 16 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred eEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEecc
Confidence 3444444567999999999999999999999999999999999999887 9999999988654322 356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+..+++.+||.||+.++..... +. . +. . . ......++.+++.+||++..+
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~-~~-------~-------~~-~-~-------------~~~~~~~~~~l~~~~l~~~~~ 142 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWH-GA-------L-------GR-F-G-------------AADREKVEEAISLVGLKPLAH 142 (265)
T ss_pred CCCCCCCccHHHHHHhCccccc-cc-------c-------cC-C-C-------------HHHHHHHHHHHHHcCCHHHhc
Confidence 9888899999999987532100 00 0 00 0 0 001123567889999976555
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+. ++.|||||||||+||+++ +++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|
T Consensus 143 ~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 143 RL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCD 216 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 54 457999999999998766 599999999999999999999999986533 4455667888889999999
Q ss_pred eEEEecCCeEEEecChHHH
Q 038815 402 DIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~ 420 (1436)
+|++|++|++++.|+.+++
T Consensus 217 ~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 217 YLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEEEECCeEEEecCHHHh
Confidence 9999999999999988765
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=305.27 Aligned_cols=200 Identities=25% Similarity=0.313 Sum_probs=161.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 253 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 45999999999999999999999999999999999999987 999999999875432 2457899999974 6888
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||++|+.|.....+.. . .+....++.+++.+||.+..+. .
T Consensus 99 ~~v~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 139 (269)
T PRK13648 99 SIVKYDVAFGLENHAVP----------Y------------------------DEMHRRVSEALKQVDMLERADY-----E 139 (269)
T ss_pred ccHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC-----C
Confidence 99999998864322110 0 0011235667899999876554 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+.| |+.++|+.+++.. +|+|++|++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-iiivtH~~~~~~~-~d~i~~l~~ 217 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT-IISITHDLSEAME-ADHVIVMNK 217 (269)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCchHHhc-CCEEEEEEC
Confidence 567999999999998776 499999999999999999999999876533445 4556666777765 999999999
Q ss_pred CeEEEecChHHHH
Q 038815 409 GLIVYLGPRELVL 421 (1436)
Q Consensus 409 G~iv~~G~~~~~~ 421 (1436)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (269)
T PRK13648 218 GTVYKEGTPTEIF 230 (269)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=304.35 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=163.8
Q ss_pred CCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEE
Q 038815 863 EPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIT 939 (1436)
Q Consensus 863 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~-~~~~G~i~ 939 (1436)
....+.++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345688999987653 2469999999999999999999999999999999999753 1 13579999
Q ss_pred EcCeeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 038815 940 ISGYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSL 1010 (1436)
Q Consensus 940 i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 1010 (1436)
++|.+... ..+++.++|++|+..+++ .||+||+.+....+. ..+.++..++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987531 234567999999988777 899999987654321 1233444567889999999853 23332
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1011 vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|||+++|++. ++.+..|+
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999854 789999999975 45566777
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=304.39 Aligned_cols=209 Identities=22% Similarity=0.268 Sum_probs=167.2
Q ss_pred cCCCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEE
Q 038815 861 PFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGS 937 (1436)
Q Consensus 861 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~ 937 (1436)
|..+..+.++|+++.++ .+.+|+|||+.+++||++||+|||||||||||++|+|.... .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33455789999987653 25699999999999999999999999999999999997642 135899
Q ss_pred EEEcCeeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 038815 938 ITISGYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012 (1436)
Q Consensus 938 i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 1012 (1436)
|.++|.+... ...++.++|++|+..+++ .||+||+.+..... .....++..+.++++++.++|.+..+...+
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987532 124567999999988777 69999998864322 112333445668889999998643222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1013 ~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. .++.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|++. ++.+..|+
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~ 231 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDY 231 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCE
Confidence 2 256899999999999999999999999999999999999999999999985 4799999999986 57778888
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=303.88 Aligned_cols=210 Identities=23% Similarity=0.300 Sum_probs=163.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..++++..+|+|+|++|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 91 (254)
T PRK14273 12 NLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIG 91 (254)
T ss_pred eeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceE
Confidence 34444445679999999999999999999999999999999999988621 2389999999876421 1245799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++ +||+||+.++....+... . .+....++..++.+|+.
T Consensus 92 ~v~q~~~~~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~ 137 (254)
T PRK14273 92 MVFQTPNPFL-MSIYDNISYGPKIHGTKD---------K------------------------KKLDEIVEQSLKKSALW 137 (254)
T ss_pred EEeecccccc-CcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHhCCc
Confidence 9999987774 899999998643321100 0 00112345567777773
Q ss_pred ----ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 323 ----ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 323 ----~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
+..++ .++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.
T Consensus 138 ~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~ 209 (254)
T PRK14273 138 NEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNM 209 (254)
T ss_pred hhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCH
Confidence 23333 4567999999999998776 4999999999999999999999999842 4 4555678888
Q ss_pred hhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 394 PETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 394 ~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++.+++|+|++|++|+++..|+.+++.
T Consensus 210 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 210 QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999999999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=306.28 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=160.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-------ccceEEEEcCCCC-
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-------PQRVAAYISQHDN- 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 249 (1436)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 46999999999999999999999999999999999999987 999999998875421 2356899999862
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-ccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~ 328 (1436)
.+...||+||+.+.....+.. . .+....++.+++.+||.. ..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-- 140 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFE-- 140 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh--
Confidence 333479999998864322110 0 001123466788899963 334
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.+++|++
T Consensus 141 ---~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 141 ---KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 34567999999999998776 5999999999999999999999998764 3 445555778888999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=305.89 Aligned_cols=213 Identities=22% Similarity=0.333 Sum_probs=168.8
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQ 246 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q 246 (1436)
++..+++++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|
T Consensus 12 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q 88 (265)
T PRK10253 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred EEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeec
Confidence 3444555567999999999999999999999999999999999999887 9999999998754332 356899999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++..++.+||+||+.++..-.. + . .. ... ......++.+++.+||++..+
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~-~----~---~~----------~~~------------~~~~~~~~~~l~~~~l~~~~~ 138 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQ-P----L---FT----------RWR------------KEDEEAVTKAMQATGITHLAD 138 (265)
T ss_pred cCcCCCCCcHHHHHHhCccccc-c----c---cc----------CCC------------HHHHHHHHHHHHHcCCHHHhc
Confidence 9988899999999987521000 0 0 00 000 001123567889999976555
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+ .++.||||||||++||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|
T Consensus 139 ~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 139 Q-----SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred C-----CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 4 4567999999999998776 499999999999999999999999986533 4555667888889999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 213 HLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=307.88 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=161.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 45677776542 2459999999999999999999999999999999999765 35799999998753
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q-----ETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~-----~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. ...++.+||++|++.. ....|+.|++.+....+ ....++..+.++++++.++|.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1245679999998653 34568999998764332 123334445688999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+..|+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~ 205 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDA 205 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999877999999999975 45566777
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=303.65 Aligned_cols=199 Identities=25% Similarity=0.302 Sum_probs=161.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~g 942 (1436)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..+. .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 578888877542 24699999999999999999999999999999999997642 13589999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ..+++.+||++|+..+++ .|++||+.+....+ ..+.++..+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 76531 134567999999988877 89999998865432 1233344456888999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|++|+|||||+|||..++..+++.|+++++ |+|||+++|++. ++.+..|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~ 222 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDY 222 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999865 899999999975 34555676
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=304.64 Aligned_cols=200 Identities=28% Similarity=0.366 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC--C---ccceEEEEcCCCC-CC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--E---PQRVAAYISQHDN-HI 251 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 251 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|+++|.++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 46999999999999999999999999999999999999987 99999999987421 1 2357999999863 34
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
..+||.||+.++....+. .+. +....+..+++.+||++..++.
T Consensus 92 ~~~tv~e~i~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~--- 134 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGL----------SKE------------------------EVEKRVKEALKAVGMEGFENKP--- 134 (275)
T ss_pred ccccHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHCCCchhhcCC---
Confidence 457999999875321110 000 0112356688999998766654
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
++.||||||||++||+++ +++|||||+|||+.++.++.+.|+++.+ . +++|+.++|+.+++.++||++++|
T Consensus 135 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 135 --PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 457999999999998776 4999999999999999999999999865 3 455666788889999999999999
Q ss_pred cCCeEEEecChHHHH
Q 038815 407 SDGLIVYLGPRELVL 421 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~ 421 (1436)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=300.48 Aligned_cols=183 Identities=27% Similarity=0.308 Sum_probs=151.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc----cccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE----TFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~l 967 (1436)
+.+|+|+|+.+++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 569999999999999999999999999999999999865 4579999999765321 1245799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
|++|++.+....+. .. ..+.++++++.++ +.+..+.. ++.||||||||++||++|+.+|++|+|||||
T Consensus 91 tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 91 TVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999987654321 11 1234577788776 55555554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 201 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADR 201 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999998874 899999999975 45556776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=304.65 Aligned_cols=201 Identities=27% Similarity=0.376 Sum_probs=163.3
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+.++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 45667766542 3569999999999999999999999999999999999765 35799999997653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
. ...++.++|++|+..+.+..||+|++.+....... ......+..+.++++++.+++.+..+..+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 23345699999998777889999999875211000 00111233456889999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ++.+..|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDH 206 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877899999999986 56777887
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=306.67 Aligned_cols=200 Identities=27% Similarity=0.363 Sum_probs=161.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC----ccceEEEEcCCCC-CCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE----PQRVAAYISQHDN-HIG 252 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 252 (1436)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 56999999999999999999999999999999999999987 999999999875422 2467999999974 234
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
..||.|++.|+....+.. . .+....++.+++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------P------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 579999999865332110 0 011223577899999987666554
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY-GITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHhc-CCEEEEEE
Confidence 57999999999998766 599999999999999999999999986533 4445556777777765 99999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998874
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=305.79 Aligned_cols=204 Identities=27% Similarity=0.337 Sum_probs=164.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEcCee
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITISGYL 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~g~~ 944 (1436)
-+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 467788876542 356999999999999999999999999999999999986532 236999999976
Q ss_pred ccc--------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 945 KKQ--------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP-----EVDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 945 ~~~--------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
... ...++.++|++|+..+++.+||+|++.+......+. ....++....++++++.+||.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123457999999998899999999998753211000 0112334457899999999987777653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++++ |.|||+++|++. ++.+..|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~ 222 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCER 222 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999764 899999999985 35556676
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=295.88 Aligned_cols=184 Identities=25% Similarity=0.292 Sum_probs=154.0
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+++|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3579999999999999999999999999999999865 357999999986532 2345679999999999999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.+....+. ... .+..+.++++++.++|.+..+.. ++.||||||||++||++|+.+|++++|||||+|||..
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 111 12345678899999998777765 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+.+.|+++.++ |+|||+++|++. ++-+..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~ 198 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQ 198 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCe
Confidence 999999999998764 899999999975 45566777
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=298.41 Aligned_cols=199 Identities=27% Similarity=0.436 Sum_probs=163.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999987 9999999998765332 457999999999999999999
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
|+.++....+.. . .+....++.+++.+||.+..++. ++.||
T Consensus 91 ~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------K------------------------KEIERKVLEIAEMLGIDHLLNRK-----PETLS 131 (235)
T ss_pred HHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 998764322100 0 00112345678889998766654 45799
Q ss_pred HHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 038815 339 GGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 339 GGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
|||||||+||+++ +++|||||+|||+.++..+.+.|++++...+. +++.++|..+++.+.+|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999998766 59999999999999999999999998653344 55557778888999999999999999999
Q ss_pred ecChHHHH
Q 038815 414 LGPRELVL 421 (1436)
Q Consensus 414 ~G~~~~~~ 421 (1436)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=304.60 Aligned_cols=205 Identities=23% Similarity=0.257 Sum_probs=162.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.|+|||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999987653 24699999999999999999999999999999999997542 13579999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ..+++.+||++|+...++. ||.||+.+....+.. ..+..+..+.++++++.++|.+........ .++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHE-PGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87532 2345679999999887774 999999887543321 112233345678999999996421111111 146
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||+++|++. .+-+..|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 789999999975 45556677
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=302.73 Aligned_cols=216 Identities=23% Similarity=0.313 Sum_probs=166.1
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCC--CCC---ccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMD--EFE---PQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~--~~~---~~~~~~ 242 (1436)
++..+++..++|+|+|++|++||+++|+||||||||||+++|+|.++|+ ...+|+|+++|+++. ... .++.++
T Consensus 9 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 88 (253)
T PRK14267 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVG 88 (253)
T ss_pred eEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhcee
Confidence 3444444567999999999999999999999999999999999998762 123899999999875 221 235799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++.+||.||+.++...++.... . .+....++.+++.+||.
T Consensus 89 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14267 89 MVFQYPNPFPHLTIYDNVAIGVKLNGLVKS--------K------------------------KELDERVEWALKKAALW 136 (253)
T ss_pred EEecCCccCCCCcHHHHHHHHHHhcCccCC--------H------------------------HHHHHHHHHHHHHcCCc
Confidence 999999999999999999886532211000 0 00112245678888874
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..... .-+..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + .++|.++|+.+++.
T Consensus 137 ~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~ 212 (253)
T PRK14267 137 DEVKD-RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAA 212 (253)
T ss_pred cchhh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHH
Confidence 31111 11345668999999999998776 4999999999999999999999999753 4 45566788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++|++++.|+.+++.
T Consensus 213 ~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 213 RVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred hhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999987763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=305.76 Aligned_cols=203 Identities=27% Similarity=0.327 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 253 (1436)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+...+|+|+++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 46999999999999999999999999999999999999886112399999999875432 2357899999974 6778
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
+||+||+.|..+..+. .+ ++....++.+++.+||++..+. .
T Consensus 100 ~tv~enl~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~ 140 (282)
T PRK13640 100 ATVGDDVAFGLENRAV----------PR------------------------PEMIKIVRDVLADVGMLDYIDS-----E 140 (282)
T ss_pred CCHHHHHHhhHHhCCC----------CH------------------------HHHHHHHHHHHHHCCChhHhcC-----C
Confidence 9999999885432211 00 0112235678899999865554 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+.| |+.++|..+++ ..+|++++|++
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEEC
Confidence 568999999999998776 499999999999999999999999986533444 55566777777 57999999999
Q ss_pred CeEEEecChHHHH
Q 038815 409 GLIVYLGPRELVL 421 (1436)
Q Consensus 409 G~iv~~G~~~~~~ 421 (1436)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=298.59 Aligned_cols=196 Identities=28% Similarity=0.354 Sum_probs=158.3
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999887 9999999998765332 248999999999999999999
Q ss_pred HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHH
Q 038815 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGG 340 (1436)
Q Consensus 261 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGG 340 (1436)
.++.+.... ...+ .+....++.+++.+||++..++. ++.||||
T Consensus 76 ~~~~~~~~~--------~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLP--------DLSK------------------------SERRAIVEEHIALVGLTEAADKR-----PGQLSGG 118 (230)
T ss_pred HHHHHhccc--------CCCH------------------------HHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHH
Confidence 875321000 0000 01122356788999998766554 4579999
Q ss_pred HHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 038815 341 QKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 341 qrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G 415 (1436)
|||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999998766 5999999999999999999999998765434 45555788888999999999999999999988
Q ss_pred ChHH
Q 038815 416 PREL 419 (1436)
Q Consensus 416 ~~~~ 419 (1436)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=290.40 Aligned_cols=178 Identities=48% Similarity=0.802 Sum_probs=151.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC--CCCeeEEEEEEcCe
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGSITISGY 943 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~--~~~~~~G~i~i~g~ 943 (1436)
.+.++|+++.++.... ...+.+|+|+|+.+++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4678888877642100 01246999999999999999999999999999999999986 4 46899999998
Q ss_pred ecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 944 LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 944 ~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 7654445678999999998888999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++.++|+|||+++|++..++.+..|+.
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEE
Confidence 999999999999999999999999999999999999999988779999999999987888888873
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=306.03 Aligned_cols=201 Identities=26% Similarity=0.356 Sum_probs=161.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCC-CCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDN-HIG 252 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~ 252 (1436)
++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 97 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFI 97 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcC
Confidence 457999999999999999999999999999999999999987 999999999875432 2457899999963 677
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+||+||+.++....+.. . .+....++++++.+||++..++.
T Consensus 98 ~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 139 (271)
T PRK13632 98 GATVEDDIAFGLENKKVP----------P------------------------KKMKDIIDDLAKKVGMEDYLDKE---- 139 (271)
T ss_pred cccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCC----
Confidence 899999998864321100 0 01122356788999998766654
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++.||||||||++||+++ +++|||||+|||+.++..+.+.|+++.+. ++++++.++|..+++. .+|++++|+
T Consensus 140 -~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~ 216 (271)
T PRK13632 140 -PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFS 216 (271)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEE
Confidence 457999999999998776 49999999999999999999999998653 3344444566666664 799999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+.+++.
T Consensus 217 ~G~i~~~g~~~~~~ 230 (271)
T PRK13632 217 EGKLIAQGKPKEIL 230 (271)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=306.33 Aligned_cols=199 Identities=28% Similarity=0.328 Sum_probs=163.3
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+. +++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 45777776542 12459999999999999999999999999999999999765 35799999998753
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. ...++.+||++|+.. .+...||.|++.+..... ....++..+.+.++++.++|.+..+..+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 233479999998753321 1234445567889999999988877763 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~ 206 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADK 206 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999877999999999965 56677887
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=303.62 Aligned_cols=210 Identities=26% Similarity=0.368 Sum_probs=166.4
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQH 247 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 247 (1436)
+..+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+
T Consensus 8 l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (255)
T PRK11231 8 LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQH 84 (255)
T ss_pred EEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEeccc
Confidence 344445567999999999999999999999999999999999999887 9999999987654322 3568999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
...++.+||.||+.++..... ..+. .. + .+....++.+++.+||++..++
T Consensus 85 ~~~~~~~tv~~~i~~~~~~~~--~~~~---~~----------~---------------~~~~~~~~~~l~~~~l~~~~~~ 134 (255)
T PRK11231 85 HLTPEGITVRELVAYGRSPWL--SLWG---RL----------S---------------AEDNARVNQAMEQTRINHLADR 134 (255)
T ss_pred CCCCCCccHHHHHHhccchhh--hhcc---CC----------C---------------HHHHHHHHHHHHHcCCHHHHcC
Confidence 888888999999988531000 0000 00 0 0011235678889999876665
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. ++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.. . +++++.++|+.+++.+++|+
T Consensus 135 ~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 135 R-----LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCE
Confidence 4 457999999999998776 5999999999999999999999998754 3 44556678888899999999
Q ss_pred EEEecCCeEEEecChHHH
Q 038815 403 IILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~ 420 (1436)
+++|++|++++.|+.+++
T Consensus 208 i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 208 LVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEECCeEEEEcCHHHh
Confidence 999999999999988765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=284.63 Aligned_cols=187 Identities=29% Similarity=0.400 Sum_probs=153.3
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQNDIHSP 965 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~ 965 (1436)
++.++|+|||+.+++||+++|+|+|||||||||++|+|..+ ..+|+|.++|.++.. ...++-++||||....||
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 45789999999999999999999999999999999999876 347999999987653 235567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
.+||+|||..++..+.. ++.....++++.+++ .|.+.++...| .|||||||-++|||||+++|++|+|||
T Consensus 92 ~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999987655432 111222267777776 36666676654 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||.||-+.-...|.++|+++.++ |.||+.+-+.- ....+.=|+
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr 206 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADR 206 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCE
Confidence 99999999999999999999976 66888887653 334444555
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=296.78 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=155.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEEcCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYISQHDNH 250 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 250 (1436)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999887 9999999998765432 2469999999989
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||.||+.+....++.. . .+....++.+++.+||.+..+..
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 143 (228)
T PRK10584 100 IPTLNALENVELPALLRGES----------S------------------------RQSRNGAKALLEQLGLGKRLDHL-- 143 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCC--
Confidence 99999999998754322100 0 00122356788999998765544
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
+..||||||||++||+++ +++|||||+|||+.++..+.+.|++++...+.|+| .++|+.+++ +.+|++++
T Consensus 144 ---~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii-~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 144 ---PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLI-LVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEE-EEecCHHHH-HhCCEEEE
Confidence 457999999999998766 59999999999999999999999998654344544 466776676 55999999
Q ss_pred ecCCeEEEe
Q 038815 406 LSDGLIVYL 414 (1436)
Q Consensus 406 L~~G~iv~~ 414 (1436)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=304.33 Aligned_cols=219 Identities=23% Similarity=0.291 Sum_probs=168.5
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--------ccceE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--------PQRVA 241 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~ 241 (1436)
++..+++++++|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.+
T Consensus 9 nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i 88 (262)
T PRK09984 9 KLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88 (262)
T ss_pred eEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhhe
Confidence 3444445567999999999999999999999999999999999999875223699999998864321 13468
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++.+||+||+.+....... ...+. ... ...+....++.+++.+||
T Consensus 89 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~---------~~~~~----~~~-------------~~~~~~~~~~~~l~~~~l 142 (262)
T PRK09984 89 GYIFQQFNLVNRLSVLENVLIGALGSTP---------FWRTC----FSW-------------FTREQKQRALQALTRVGM 142 (262)
T ss_pred EEEccccccccCCcHHHHHHhhhccccc---------chhhh----ccc-------------ccHHHHHHHHHHHHHcCC
Confidence 9999999899999999999875321000 00000 000 000112345678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+++ +++|||||+|||..++..+.+.|+++++.. +++||.++|+.+++
T Consensus 143 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~ 216 (262)
T PRK09984 143 VHFAHQR-----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYA 216 (262)
T ss_pred HHHHhCC-----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 8766554 457999999999998766 599999999999999999999999986533 45666678888889
Q ss_pred HhhcCeEEEecCCeEEEecChHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+++|+|++|++|++++.|+.++.
T Consensus 217 ~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 217 LRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999987653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=297.34 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=161.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcccEEEEcCccCCCCCc-cceEEEEcCCCC--CCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS----SLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDN--HIG 252 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 252 (1436)
+|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 9999999998754433 257999999974 557
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+|+.|++.+.....+.. . .+....++.+++.+||++. +...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~--~~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDP--EEVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCch--HHHHhC
Confidence 789999998754321100 0 0012235678999999732 011234
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+++ +++|||||+|||..+...+.+.|+++.+. .+++|+.++|..+++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 5567999999999998766 59999999999999999999999987653 34555567888889999999999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=297.80 Aligned_cols=205 Identities=28% Similarity=0.413 Sum_probs=165.9
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIG 252 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~ 252 (1436)
+++.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++..++
T Consensus 9 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (237)
T TIGR00968 9 RFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFK 85 (237)
T ss_pred EECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhcc
Confidence 334457999999999999999999999999999999999999887 9999999998764433 357999999998899
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+|+.||+.+....++.. .. .....++.+++.+|+....++.
T Consensus 86 ~~t~~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 127 (237)
T TIGR00968 86 HLTVRDNIAFGLEIRKHP----------KA------------------------KIKARVEELLELVQLEGLGDRY---- 127 (237)
T ss_pred CCcHHHHHHhHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhCC----
Confidence 999999998764332110 00 0112246678889997655543
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++.||||||||++|++++ +++|||||+|||..+...+.+.|++.+.. .+.+++.++|...++.+++|+|++|+
T Consensus 128 -~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 128 -PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 457999999999997765 59999999999999999999999987653 23445556777788899999999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+.+++.
T Consensus 206 ~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 206 NGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=302.51 Aligned_cols=209 Identities=29% Similarity=0.385 Sum_probs=165.6
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHD 248 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 248 (1436)
..+.++..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 8 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (256)
T TIGR03873 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDS 84 (256)
T ss_pred EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccC
Confidence 33444567999999999999999999999999999999999999887 9999999998765432 34689999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.++..... ... .. + ..+....++.+++.+||.+..++.
T Consensus 85 ~~~~~~tv~e~l~~~~~~~~---------~~~------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~ 134 (256)
T TIGR03873 85 DTAVPLTVRDVVALGRIPHR---------SLW------AG-D--------------SPHDAAVVDRALARTELSHLADRD 134 (256)
T ss_pred ccCCCCCHHHHHHhcchhhh---------hhc------cC-C--------------CHHHHHHHHHHHHHcCcHhhhcCC
Confidence 78888999999987521000 000 00 0 000112346678889997655544
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+..|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.. . +++|+.++|+.+++.+++|+|
T Consensus 135 -----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 135 -----MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEE
Confidence 457999999999998766 5999999999999999999999998754 3 455666788888999999999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|++++.|+.+++
T Consensus 208 ~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 208 VVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEeCCCEEEecCHHHh
Confidence 99999999999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=303.82 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=165.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~ 241 (1436)
.++..+++++.+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.+
T Consensus 23 ~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (267)
T PRK14235 23 RDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARV 102 (267)
T ss_pred EeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhce
Confidence 34444445567999999999999999999999999999999999998741 11389999999887531 124578
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++..++. ||.||+.++.+.++... .+ .+....++.+++.+||
T Consensus 103 ~~v~q~~~~~~~-tv~enl~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l 149 (267)
T PRK14235 103 GMVFQKPNPFPK-SIYENVAYGPRIHGLAR--------SK------------------------AELDEIVETSLRKAGL 149 (267)
T ss_pred EEEecCCCCCCC-cHHHHHHHHHHhccccc--------ch------------------------HHHHHHHHHHHHHcCC
Confidence 999999888875 99999998654322100 00 0011234667888998
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
.+...... +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++
T Consensus 150 ~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~ 225 (267)
T PRK14235 150 WEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQA 225 (267)
T ss_pred chhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHH
Confidence 64211111 244668999999999998777 4999999999999999999999998753 4 4555577888899
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|++++|++|+++.+|+.+++.
T Consensus 226 ~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 226 ARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999887753
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=311.32 Aligned_cols=215 Identities=18% Similarity=0.175 Sum_probs=167.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccEEEEcCccCCCCCc-------cceEEEEcCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-LKVSGRVTYNGHNMDEFEP-------QRVAAYISQH 247 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 247 (1436)
....+|+|||++|++||+++|+|+||||||||+++|+|.+++. ...+|+|.++|.++..... ++.++||+|+
T Consensus 18 ~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 3457999999999999999999999999999999999998642 1238999999998765432 2369999999
Q ss_pred CC--CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 248 DN--HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 248 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
+. +.|.+||.+++.+........... ..+ ..+....+..+|+.+||++..
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~-----~~~-----------------------~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRW-----WQR-----------------------FGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccc-----ccc-----------------------HHHHHHHHHHHHHHCCCCChH
Confidence 75 678899999997643211000000 000 001123356789999997532
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+ +.+..+..|||||||||+||+|+ +|++||||+|||+.++.++.+.|+++.+.. +++++.++|+...+.+++
T Consensus 150 ~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 150 D--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWA 226 (330)
T ss_pred H--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhC
Confidence 2 22456778999999999998877 499999999999999999999999986533 456666899999999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+|++|++|++++.|+.+++.
T Consensus 227 dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=308.06 Aligned_cols=180 Identities=22% Similarity=0.263 Sum_probs=134.3
Q ss_pred CCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcC
Q 038815 863 EPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942 (1436)
Q Consensus 863 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g 942 (1436)
.+..+.+.++.+.+. | +.-+++.+++..++.-...+++|+||+||||+++++.|..+ +..|.+.+++
T Consensus 359 ~~p~l~i~~V~f~y~-p----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT-P----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCC-C----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 345677777775543 1 11268899999999999999999999999999999998654 2456666655
Q ss_pred eecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCH
Q 038815 943 YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVSGLST 1021 (1436)
Q Consensus 943 ~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSg 1021 (1436)
++.++|-.|..+-+-.+.|-+ +.+...++ |.. ..+ ..++-+..+||..- +.. .+.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-pG~-~~e----e~r~hl~~~Gl~g~la~~-----si~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-PGK-TEE----EIRRHLGSFGLSGELALQ-----SIASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhC-CCC-CHH----HHHHHHHhcCCCchhhhc-----cccccCC
Confidence 356889899765443344433 33434443 222 222 24566788888752 221 2568999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
|||-||++|.....+|.+|+|||||+.||..+-..+.++|++. +..||+++|+.
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~ 539 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE 539 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH
Confidence 9999999999999999999999999999999999999999887 56899999984
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=332.38 Aligned_cols=204 Identities=21% Similarity=0.284 Sum_probs=168.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 377888877652 3569999999999999999999999999999999999865433589999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
... ..++.+|||+|+..+++.+||+|++.+....+.....+.++..+.++++++.++|.+..+..+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 422 124569999999988899999999988654321111223344556889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~ 212 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDT 212 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999999878999999999975 45566777
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=299.38 Aligned_cols=214 Identities=21% Similarity=0.290 Sum_probs=164.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQH 247 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 247 (1436)
+..+++.+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|+++|+++..... ++.++|++|+
T Consensus 8 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~ 87 (246)
T PRK14269 8 LNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQ 87 (246)
T ss_pred eEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecC
Confidence 3344445679999999999999999999999999999999999975311239999999998765422 4579999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++ .||+||+.++...++.... . ......++.+++.+||......
T Consensus 88 ~~l~~-~tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 134 (246)
T PRK14269 88 PNVFV-KSIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKD 134 (246)
T ss_pred Ccccc-ccHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhH
Confidence 88887 6999999886433211000 0 0011224567888998532111
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.. ++.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|+
T Consensus 135 ~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 135 KL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--N-LSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred Hh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHHHHHhhCcE
Confidence 11 345678999999999998776 4999999999999999999999998742 4 4566678888899999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+.+++.
T Consensus 211 i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 211 TAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999987753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=296.25 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=156.9
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-----CccceEEEEcCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----EPQRVAAYISQH 247 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~ 247 (1436)
.+++.+.+|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+
T Consensus 8 ~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (213)
T cd03262 8 KSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQ 84 (213)
T ss_pred EEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecc
Confidence 3334467999999999999999999999999999999999999887 99999999887421 123579999999
Q ss_pred CCCCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 248 DNHIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+.+++.+||+||+.++... ++. .. .+....++.+++.+||++..+
T Consensus 85 ~~~~~~~t~~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~ 130 (213)
T cd03262 85 FNLFPHLTVLENITLAPIKVKGM----------SK------------------------AEAEERALELLEKVGLADKAD 130 (213)
T ss_pred cccCCCCcHHHHHHhHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCHhHhh
Confidence 9899999999999885421 110 00 001123456788899987655
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
.. ++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.+ .+ ++|+.++|+..++.+++|
T Consensus 131 ~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 131 AY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVAD 203 (213)
T ss_pred hC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCC
Confidence 44 457999999999998766 5999999999999999999999999865 34 455557888899999999
Q ss_pred eEEEecCCeE
Q 038815 402 DIILLSDGLI 411 (1436)
Q Consensus 402 ~vilL~~G~i 411 (1436)
+|++|++|++
T Consensus 204 ~i~~l~~g~i 213 (213)
T cd03262 204 RVIFMDDGRI 213 (213)
T ss_pred EEEEEeCCcC
Confidence 9999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=296.60 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=161.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHH
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
.|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 3899999999999999999999999999999999987 9999999998754332 35799999999999999999999
Q ss_pred HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHH
Q 038815 261 AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGG 340 (1436)
Q Consensus 261 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGG 340 (1436)
.+..... .. ..+ .....++.+++.+||++..++. ++.||||
T Consensus 93 ~~~~~~~-~~--------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 133 (232)
T PRK10771 93 GLGLNPG-LK--------LNA-------------------------AQREKLHAIARQMGIEDLLARL-----PGQLSGG 133 (232)
T ss_pred hcccccc-cC--------CCH-------------------------HHHHHHHHHHHHcCcHHHHhCC-----cccCCHH
Confidence 8753210 00 000 0112356788999998766654 4579999
Q ss_pred HHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 038815 341 QKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 341 qrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G 415 (1436)
|||||+||++. +++|||||+|||..++..+.+.|+++.+..+ ++++.++|+..++.+++|+|++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999998766 5999999999999999999999998765334 45555788888999999999999999999999
Q ss_pred ChHHHH
Q 038815 416 PRELVL 421 (1436)
Q Consensus 416 ~~~~~~ 421 (1436)
+.+++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 987764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=314.77 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=161.7
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee----cc---ccc---c-cceEEEec
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL----KK---QET---F-TRISGYCE 958 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~----~~---~~~---~-~~~~gyv~ 958 (1436)
+...+|+|+|+.|++||+++|||+||||||||+++|+|... +.+|+|.++|.+ .. ... + ++.+|||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 457999999952 21 111 2 25799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 038815 959 QNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1038 (1436)
Q Consensus 959 Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~ 1038 (1436)
|+..++|.+||+||+.|....+ ..+.+++.+.++++++.+||.+..+..+ ..||||||||+.|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875443 2345566678899999999998877764 5799999999999999999999
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1039 IIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1039 il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999765 999999999975 56777888
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-32 Score=278.66 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=179.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc---ceEEEEc
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ---RVAAYIS 245 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~ 245 (1436)
+++.++.+++.||+|+|..|++|.+|+++|||||||||||.+++.+++.+ +|+|+++|.++.....+ +.++..-
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999887 99999999998776543 5667888
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|+......+||+|-+.|+.-...-|. ++ .+....++..++-|+|++..
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqGR-------lt-------------------------~eD~~~I~~aieyl~L~~l~ 129 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQGR-------LT-------------------------KEDRRIINEAIEYLHLEDLS 129 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCCC-------Cc-------------------------hHHHHHHHHHHHHhcccchH
Confidence 98888889999999999743221110 00 11234567788999998766
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
| ++...||||||||.-||...+ ++||||.++||...+.++++.||+++++.++|+|+ +.|+-..+..++
T Consensus 130 d-----ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~Ys 203 (252)
T COG4604 130 D-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYS 203 (252)
T ss_pred H-----HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhh
Confidence 5 556689999999999976553 89999999999999999999999999999888877 567888999999
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+|+-|.+|+++.+|+++++.
T Consensus 204 D~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 204 DHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred hheeeecCCEEEecCCHHHhc
Confidence 999999999999999999885
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=308.24 Aligned_cols=204 Identities=19% Similarity=0.281 Sum_probs=162.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++... .....+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478888887663110 001359999999999999999999999999999999999865 3579999999764
Q ss_pred c--------cccccceEEEeccCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038815 946 K--------QETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPG 1015 (1436)
Q Consensus 946 ~--------~~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 1015 (1436)
. ...+++.++|++|++.. ....||+||+.|....+ ....++..+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999632 22369999998864322 123344445688899999994 566654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++. |+|||+++|++. ++.+..|+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 3579999999999999999999999999999999999999999999998764 899999999976 56777888
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=297.83 Aligned_cols=186 Identities=27% Similarity=0.386 Sum_probs=158.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-cccceEEEeccCCCCCCCCCHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-TFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+.+|+|+|+.+.+||+++|+||||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|+..+++..|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999865 3579999999875432 2346799999999888899999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
||+.+....+. .......+.++++++.+++.+..++.. +.||+||+||++||++|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 223333456789999999987777653 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+...+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~ 200 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADR 200 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCE
Confidence 99999999999998775 899999999984 56666777
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=303.74 Aligned_cols=200 Identities=24% Similarity=0.278 Sum_probs=164.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+.. ..+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5788898876531 12358999999999999999999999999999999999865 3579999999865
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.++|++|++. +++..|+++++.+..... ....++..+.++++++.+++.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 32 234567999999974 677789999998864322 123344455688999999998877765 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++.. +.. .|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~ 211 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADH 211 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCE
Confidence 9999999999999999999999999999999999999999998764 8999999999864 433 677
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=266.47 Aligned_cols=198 Identities=28% Similarity=0.396 Sum_probs=165.9
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEEE
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAYI 244 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv 244 (1436)
+......+||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+.|+++..+.. .+.+++|
T Consensus 17 g~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfV 93 (228)
T COG4181 17 GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFV 93 (228)
T ss_pred cCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEE
Confidence 34456788999999999999999999999999999999999999998 9999999999876543 2679999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|...++|+||..||+...+.++|-+.+ + ........|+.+||.+-
T Consensus 94 FQSF~Lip~ltAlENV~lPleL~ge~~~----------------------~------------~~~~A~~lL~~vGLg~R 139 (228)
T COG4181 94 FQSFHLIPNLTALENVALPLELRGESSA----------------------D------------SRAGAKALLEAVGLGKR 139 (228)
T ss_pred EEeeeccccchhhhhccchhhhcCCccc----------------------c------------HHHHHHHHHHHhCcccc
Confidence 9999999999999999988777653211 0 11224567899999875
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+ .++.+|||||+|||+||||. +||-||||.+||..|..+|.+.|..+.+. .+|++|.++|+ +.....
T Consensus 140 l~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD-~~LA~R 212 (228)
T COG4181 140 LT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHD-PQLAAR 212 (228)
T ss_pred cc-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCC-HHHHHh
Confidence 43 56789999999999997665 69999999999999999999999998775 56677767776 466778
Q ss_pred cCeEEEecCCeEEE
Q 038815 400 FDDIILLSDGLIVY 413 (1436)
Q Consensus 400 fD~vilL~~G~iv~ 413 (1436)
|||++-|.+|+++.
T Consensus 213 c~R~~r~~~G~l~~ 226 (228)
T COG4181 213 CDRQLRLRSGRLVE 226 (228)
T ss_pred hhheeeeecceecc
Confidence 99999999999874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=300.04 Aligned_cols=205 Identities=22% Similarity=0.284 Sum_probs=162.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~~-~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.|+|||++||+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 367788876653 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ..+++.++|++|+..+++..|++||+.+....+. ..+..+..+.++++++.+++.+........ .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 86531 2356779999999999999999999987543321 112233345678899999986421111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 216 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDY 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999976 689999999975 56677787
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=319.49 Aligned_cols=190 Identities=27% Similarity=0.447 Sum_probs=160.2
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
+..++.+|+++.++ +++++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCc
Confidence 45666778888765 234799999999999999999999999999999999998763 5799999998
Q ss_pred ecc---cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc------ccccCCC
Q 038815 944 LKK---QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR------QSLVGLP 1014 (1436)
Q Consensus 944 ~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~~ 1014 (1436)
+.. +..+++.++||+|++.+++ -|++||+.++. | +.++ +.+.++++..+|.+.. |+.+|..
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCCH----HHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 654 4568899999999999886 59999998752 2 2233 3466788888877654 4555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
.++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++||++++|++.
T Consensus 454 -G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 454 -GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred -CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 478999999999999999999999999999999999999999999999987 599999999974
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=304.09 Aligned_cols=203 Identities=26% Similarity=0.337 Sum_probs=161.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC------eeEEEEEE
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGSITI 940 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~------~~~G~i~i 940 (1436)
++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 45677766542 356999999999999999999999999999999999976532 12799999
Q ss_pred cCeeccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038815 941 SGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016 (1436)
Q Consensus 941 ~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1016 (1436)
+|.+... ..+++.++|++|++..++.+||+|++.+....+.. .....++..+.++++++.++|.+..+.. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9986532 23456689999998766668999999875321110 0111123345688999999998776654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHh
Q 038815 1017 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESF 1086 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~---------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~F 1086 (1436)
..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+..
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998876 899999999975 566678
Q ss_pred hh
Q 038815 1087 DE 1088 (1436)
Q Consensus 1087 D~ 1088 (1436)
|+
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 87
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=299.52 Aligned_cols=215 Identities=21% Similarity=0.282 Sum_probs=165.6
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++.+.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++
T Consensus 9 nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~ 88 (252)
T PRK14256 9 QLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVG 88 (252)
T ss_pred EEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEE
Confidence 34444445679999999999999999999999999999999999986 3112389999999887432 1245799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++.+||+||+.++.+..+... .. +....++.+++.+|+.
T Consensus 89 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~ 135 (252)
T PRK14256 89 MVFQKPNPFPAMSIYDNVIAGYKLNGRVN---------RS------------------------EADEIVESSLKRVALW 135 (252)
T ss_pred EEecCCCCCCcCcHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCc
Confidence 99999999999999999987543211000 00 0112346678888885
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
....... +..+..|||||||||+||+++ +++|||||+|||+.++.++.+.|+++.+ + ++||.++|..+++.
T Consensus 136 ~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~ 211 (252)
T PRK14256 136 DEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAA 211 (252)
T ss_pred hhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHH
Confidence 4211111 234667999999999998766 5999999999999999999999999853 3 45566788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|++++|++|++++.|+.+++.
T Consensus 212 ~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 212 RVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred hhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999988753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=299.51 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=164.4
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCCC-----ccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFE-----PQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~ 241 (1436)
+++..+++++.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.+
T Consensus 8 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (251)
T PRK14270 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRV 87 (251)
T ss_pred EEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhhe
Confidence 33444444567999999999999999999999999999999999998641 124899999999875321 24569
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++ +||+||+.|.....+... . .+....++.+++.+||
T Consensus 88 ~~~~q~~~~~~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l 133 (251)
T PRK14270 88 GMVFQKPNPFP-MSIYDNVAYGPRIHGIKD---------K------------------------KELDKIVEWALKKAAL 133 (251)
T ss_pred EEEecCCCcCC-CcHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCC
Confidence 99999988887 899999998654322100 0 0011224567788887
Q ss_pred cc-cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 322 DI-CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 322 ~~-~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
.. +.+ .-+..++.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++.+ + ++++.++|+..+
T Consensus 134 ~~~~~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~ 208 (251)
T PRK14270 134 WDEVKD--DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQ 208 (251)
T ss_pred chhhhh--HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHH
Confidence 42 111 11245668999999999998766 5999999999999999999999998754 4 455557788889
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+++|+|++|++|++++.|+.+++.
T Consensus 209 ~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 209 ASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999988763
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=300.34 Aligned_cols=192 Identities=21% Similarity=0.261 Sum_probs=153.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEEcCeeccc-----ccccceEEEeccCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSITISGYLKKQ-----ETFTRISGYCEQNDIH 963 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 963 (1436)
+.+|+|+|+.++|||+++|+|+||||||||+++|+|.... . +.+|+|.++|.+... ...++.++|++|+..+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 5699999999999999999999999999999999997531 1 357999999976532 1345679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
++. ||+||+.+....+. .....+..++.++++++.++|.+........ .+..||||||||++||++|+.+|++|+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 775 99999987643331 1112233445678899999996532111111 24689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.+...+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCE
Confidence 9999999999999999999985 4899999999976 56667787
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=301.27 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=165.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++
T Consensus 9 ~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~ 88 (258)
T PRK14241 9 DLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88 (258)
T ss_pred eEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceE
Confidence 3444444567999999999999999999999999999999999998641 01399999999886421 1245799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++.+||+||+.++....+.. .+ ...+..++.+++.+||.
T Consensus 89 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~---------~~------------------------~~~~~~~~~~l~~~~l~ 135 (258)
T PRK14241 89 MVFQRPNPFPTMSIRDNVVAGLKLNGVR---------NK------------------------KDLDELVEKSLRGANLW 135 (258)
T ss_pred EEccccccCCCCcHHHHHHHHHHhcCCC---------CH------------------------HHHHHHHHHHHHHcCCc
Confidence 9999999999999999998865322100 00 00122346678888884
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
....... +..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + ++||.++|+..++.
T Consensus 136 ~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~ 211 (258)
T PRK14241 136 NEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAA 211 (258)
T ss_pred hhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHH
Confidence 2111111 244568999999999998776 4999999999999999999999998743 4 45566788888999
Q ss_pred hhcCeEEEec------CCeEEEecChHHHH
Q 038815 398 DLFDDIILLS------DGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~------~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|+ +|++++.|+++++.
T Consensus 212 ~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 212 RVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred HhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999997 79999999988763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=300.18 Aligned_cols=212 Identities=20% Similarity=0.259 Sum_probs=163.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccEEEEcCccCCCCC-----ccceEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL---DSSLKVSGRVTYNGHNMDEFE-----PQRVAA 242 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~---~~~~~~~G~I~~~G~~~~~~~-----~~~~~~ 242 (1436)
+..+++.+++|+|+|+.|++||+++|+|||||||||||++|+|.. ++. ..+|+|.++|.++.... .++.++
T Consensus 9 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 87 (250)
T PRK14245 9 VNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVG 87 (250)
T ss_pred EEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheE
Confidence 334444567999999999999999999999999999999999973 331 13899999999875421 235699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++ .||.||+.++.+.++... . ......++.+++.+||.
T Consensus 88 ~v~q~~~~~~-~tv~~nl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14245 88 MVFQRPNPFP-KSIFENVAYGLRVNGVKD----------N-----------------------AFIRQRVEETLKGAALW 133 (250)
T ss_pred EEecCCccCc-ccHHHHHHHHHHHcCCCc----------H-----------------------HHHHHHHHHHHHHcCCC
Confidence 9999988777 699999988654321100 0 00112356678889986
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+...+.. ++.++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.
T Consensus 134 ~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~ 209 (250)
T PRK14245 134 DEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAA 209 (250)
T ss_pred cchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHH
Confidence 4322211 245668999999999998766 599999999999999999999999874 24 45566788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++|++++.|+++++.
T Consensus 210 ~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 210 RVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred hhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999998874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=305.64 Aligned_cols=204 Identities=22% Similarity=0.269 Sum_probs=165.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-+.++|+++.++.... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 3678888877642100 012469999999999999999999999999999999999865 4579999999876
Q ss_pred cc----ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 946 KQ----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+.++.++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 42 234677999999964 233469999998875432 2234445567899999999998877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +- ..|+
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~ 213 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADR 213 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCE
Confidence 99999999999999999999999999999999999999999999764 9999999999875 33 3787
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=302.59 Aligned_cols=199 Identities=23% Similarity=0.271 Sum_probs=161.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEc
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITIS 941 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~ 941 (1436)
..+.++|+++.+. .+.+|+|+|+.|++||+++|+|||||||||||++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588899987653 24699999999999999999999999999999999997542 1358999999
Q ss_pred Ceecc-----cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 038815 942 GYLKK-----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVG 1012 (1436)
Q Consensus 942 g~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 1012 (1436)
|.+.. ....++.++|++|+..+++ .||+||+.+.+..+. ... ...+.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98642 1234567999999988887 499999988764431 111 22345678888888743 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1013 ~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++++ ++|||+++|++. ++.+..|+
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 467999999999999999999999999999999999999999999999854 799999999974 56777887
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-32 Score=339.52 Aligned_cols=201 Identities=30% Similarity=0.449 Sum_probs=165.2
Q ss_pred cCCCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE
Q 038815 861 PFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI 940 (1436)
Q Consensus 861 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i 940 (1436)
|.-...++|+|++|.+.. ++..+|+|+|+.|+|||.+||+|+||||||||+|+|+|..+ +..|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 334557999999998863 22469999999999999999999999999999999999876 46899999
Q ss_pred cCeeccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccc
Q 038815 941 SGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-------PLRQSL 1010 (1436)
Q Consensus 941 ~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~ 1010 (1436)
||++..+ ..+|+.+|||+|++.++. -|++||+.++. ++.+.++ +.++++..|.. .-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 9998654 568899999999998875 69999998752 2333222 23334433333 335677
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1011 vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|..| .+||||||||++|||+|+++|+||+||||||+||+.+.+.|++.|++... |+|+|+++|.++ .....|+
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccE
Confidence 77654 58999999999999999999999999999999999999999999999754 799999999986 5778888
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=298.93 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeec
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLK 945 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~ 945 (1436)
+.++|+++.++ .+.+|+|+|+.++|||+++|+||||||||||+++|+|.... .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 45677776552 24699999999999999999999999999999999997532 24579999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
.. ..+++.++|++|+..+++ .||+||+.+....+... .......+.++++++.++|.+........ ..+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 42 234567999999988887 69999998865443110 11223345678899999995422111111 24679999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++.+ |+|||+++|+++ ++.+..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 210 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADY 210 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcE
Confidence 99999999999999999999999999999999999999999865 899999999974 35555666
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=302.02 Aligned_cols=202 Identities=24% Similarity=0.268 Sum_probs=162.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCC--CCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDN--HIG 252 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 252 (1436)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753221 246899999874 578
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccccC
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLVGD 331 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~ 331 (1436)
.+||.|++.+..+.... ... .+....++.+++.+||. +..+.
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 145 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LEP------------------------EQREKQIIETLRQVGLLPDHASY---- 145 (267)
T ss_pred chhHHHHHHHHHHhccC---------CCH------------------------HHHHHHHHHHHHHcCCChHHHhc----
Confidence 88999999876432210 000 00112356789999994 44443
Q ss_pred cccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|
T Consensus 146 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 146 -YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred -CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 3457999999999998766 599999999999999999999999986533 455556788888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 038815 407 SDGLIVYLGPRELVL 421 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~ 421 (1436)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887753
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=299.45 Aligned_cols=194 Identities=28% Similarity=0.364 Sum_probs=159.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367788877642 2469999999999999999999999999999999999765 3579999999765
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.++|++|+..+++ .||+|++.+....+ . . ..+.++++++.++|. +..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999997653321 1 1 124577899999996 455553 467999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||..+...+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~ 201 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDY 201 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998774 999999999976 45566777
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=300.76 Aligned_cols=204 Identities=21% Similarity=0.268 Sum_probs=161.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~~-~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478888887653 2469999999999999999999999999999999999754 21 1479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.+||++|+..+++. ||+||+.+....+. ....++..+.++++++.+++.+........ ..+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87531 2345679999999888875 99999987644321 112334445678899999986421111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||||||||++||++|+.+|++|+|||||+|||..++..+++.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 8999999999999999999999999999999999999999999999865 799999999975 56777887
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=295.95 Aligned_cols=184 Identities=29% Similarity=0.392 Sum_probs=157.0
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+|+|++++|||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+..+++.+|+.|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999765 457999999986543 1234679999999999999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.+..... .....+..+.++++++.++|.+..++.+ +.||||||||++||++|+.+|++++|||||+|||..
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~ 199 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADK 199 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999998765 999999999984 46667787
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=306.29 Aligned_cols=200 Identities=22% Similarity=0.313 Sum_probs=159.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC----C----CccceEEEEcCCCC-
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----F----EPQRVAAYISQHDN- 249 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~- 249 (1436)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999999887 9999999988642 1 12356899999863
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-cccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 328 (1436)
.+...||+||+.|+....+.. . .+....++.+++.+||+ +..++
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------K------------------------QEAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhcC-
Confidence 233469999998864321100 0 00112345678889994 44443
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.++.|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.+++|+|
T Consensus 147 ----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 147 ----SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred ----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 4557999999999998776 499999999999999999999999886533 455566788888999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999987763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=299.42 Aligned_cols=214 Identities=22% Similarity=0.318 Sum_probs=163.6
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..++.++.+|+|+|++|++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++
T Consensus 10 ~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 89 (252)
T PRK14239 10 DLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIG 89 (252)
T ss_pred eeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEE
Confidence 34444445679999999999999999999999999999999999853 4222389999999887421 1245799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++ +||+||+.++....+... . ......++.+++.+|+.
T Consensus 90 ~v~q~~~~~~-~tv~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14239 90 MVFQQPNPFP-MSIYENVVYGLRLKGIKD----------K-----------------------QVLDEAVEKSLKGASIW 135 (252)
T ss_pred EEecCCccCc-CcHHHHHHHHHHHcCCCc----------H-----------------------HHHHHHHHHHHHHcCCc
Confidence 9999988777 899999988643321100 0 00112245567788874
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
....+. -+..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.
T Consensus 136 ~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~ 211 (252)
T PRK14239 136 DEVKDR-LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQAS 211 (252)
T ss_pred hhHHHH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHH
Confidence 321111 1345668999999999998766 5999999999999999999999998743 4 45566788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+|+|++|++|++++.|+.+++.
T Consensus 212 ~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 212 RISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999988763
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=299.24 Aligned_cols=200 Identities=22% Similarity=0.293 Sum_probs=160.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367788877653 246999999999999999999999999999999999964311 2479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.++|++|+..+++ .|++||+.+....+. ..+.++..+.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87532 234567999999988877 899999988654321 1123334566788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDK 214 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCE
Confidence 467999999999999999999999999999999999999999999999854 899999999974 56677787
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=299.18 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=161.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcCe
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISGY 943 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g~ 943 (1436)
++++|+++.+. ++.+|+|+|+.+++||+++|+|||||||||||++|+|..... +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67788876542 246999999999999999999999999999999999975421 25799999998
Q ss_pred eccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 944 LKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 944 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
+... ...++.++|++|++.+++ .||+|++.+....+. ....+..++.++++++.+++.+..+.... ..+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 6532 134567999999988887 899999988654321 11223344567888999998642111111 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++||++|+.+|++|+|||||+|||..++..+++.|+++++ ++|||+++|++. ++.+..|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 799999999976 46677787
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=299.30 Aligned_cols=204 Identities=27% Similarity=0.312 Sum_probs=160.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~-~~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||++||+||||||||||+++|+|... + ...+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 467888887653 2469999999999999999999999999999999999632 2 12479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ..+++.++|++|+..+++ .||+||+.+....+. ....+...+.++++++.+++.+........ .+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHD-SAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhc-Ccc
Confidence 86531 234567999999988777 899999987644321 112233345678889999875321111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 216 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDR 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 699999999975 57777888
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=299.02 Aligned_cols=200 Identities=22% Similarity=0.251 Sum_probs=161.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
-+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 466788876542 246999999999999999999999999999999999975421 2579999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.+||++|++.+++ .|++||+.|....... ...++..+.++++++.++|.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87532 134567999999988887 8999999886543211 123344456788999998853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|+||+|||||+|||..++..+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~ 215 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDY 215 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCE
Confidence 468999999999999999999999999999999999999999999999876 689999999975 67777888
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=294.86 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=159.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 477888887652 2469999999999999999999999999999999999765 3579999999764
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSg 1021 (1436)
.. ..+++.++|++|+..+++ .||+||+.+....+.. .. ..+.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567999999988877 4999999875443321 11 124567899999995 355554 467999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|.|||+++|++.. + +..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~ 206 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADK 206 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCE
Confidence 999999999999999999999999999999999999999999876 48999999999864 3 34665
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=297.39 Aligned_cols=196 Identities=23% Similarity=0.281 Sum_probs=160.4
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ ++ ..|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 45777777653 11 138999999999999999999999999999999865 45799999998653
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...++.++|++|++.+++.+|+.||+.+...... .. .+...+.++++++.+||.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 2 1234679999999999999999999987532111 11 1233556899999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 199 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPR 199 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998764 899999999986 45666777
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=299.25 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=165.7
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc-----CCCCCc------
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN-----MDEFEP------ 237 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~~~~------ 237 (1436)
+++..+.+++.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +.....
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred eeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHH
Confidence 34444444567999999999999999999999999999999999999987 9999999987 554322
Q ss_pred -cceEEEEcCCC--CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHH
Q 038815 238 -QRVAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDY 314 (1436)
Q Consensus 238 -~~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1436)
++.++|++|++ .+++.+|+.||+.+.....+.. +. .+....+++
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~-----------~~~~~~~~~ 133 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR----------------------HY-----------GDIRATAGD 133 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccC----------------------cH-----------HHHHHHHHH
Confidence 23589999997 3677889999997643211000 00 001223567
Q ss_pred HHHHcCCcc-cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 038815 315 YLKVLGLDI-CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS 388 (1436)
Q Consensus 315 ~l~~lgL~~-~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~ 388 (1436)
+++.+|+.+ ..++ .+..|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.+. .+.+||.
T Consensus 134 ~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~ 207 (258)
T PRK11701 134 WLERVEIDAARIDD-----LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVI 207 (258)
T ss_pred HHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEE
Confidence 889999963 3443 4557999999999998776 59999999999999999999999987653 3456666
Q ss_pred EecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 389 LLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 389 ~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+..++.+.+|+|++|++|++++.|+++++.
T Consensus 208 isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 208 VTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 888899999999999999999999999987753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=314.55 Aligned_cols=179 Identities=25% Similarity=0.357 Sum_probs=155.0
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccccceEEEeccCCCCCCCCCH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999865 357999999986532 1245679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+||+.|..... ...++.+.++++++.++|.+..+..+ ..|||||||||+||++|+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334556889999999998877763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.++..+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~ 201 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADR 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999875 899999999985 57777888
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=302.30 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=165.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+..+.. ....+.+.+|+|+|+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3678888877642110 000012469999999999999999999999999999999999875 3579999999865
Q ss_pred cc---ccccceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~l 1019 (1436)
.. ...++.++|++|+.. +.+.+||.|++.+....+. .....+..+.++++++.++|. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456999999874 5678899999988654432 123334445688999999994 555554 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+..|+
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~ 219 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQ 219 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999999999864 899999999975 56667787
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=305.39 Aligned_cols=202 Identities=24% Similarity=0.268 Sum_probs=165.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCe-eEEEEEEcCee
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSITISGYL 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~-~~G~i~i~g~~ 944 (1436)
.++++|+++.++. ..+.+|+|||+.|++||++||+||||||||||+++|+|...+.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4778888876531 12459999999999999999999999999999999999765321 24899999987
Q ss_pred ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
... ...++.+||++|+.. .++..||+|++.|....+ ..+.++..+.++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 566789999998764322 234455556789999999998877766 46899
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||++||++|+.+|++|+|||||+|||..++..+++.|+++++. |.|||+++|+++. + +..|+
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999999999865 8999999999874 4 46788
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=292.92 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=159.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc--Ce-
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS--GY- 943 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~--g~- 943 (1436)
+.++|+++.+..... ...++.+|+|+|+.|++||+++|+|+||||||||+++|+|... +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 456777766532100 0012579999999999999999999999999999999999865 347999998 42
Q ss_pred -eccc---cc----ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038815 944 -LKKQ---ET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLP 1014 (1436)
Q Consensus 944 -~~~~---~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~ 1014 (1436)
+... .. .++.+||++|+..+++.+||+|++.+..... ....+...+.++++++.++|.+ ..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 2211 11 1346999999998899999999998764332 1233334456788999999975 33443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+..|+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~ 218 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADR 218 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 4679999999999999999999999999999999999999999999999877999999999943 33345555
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=276.88 Aligned_cols=191 Identities=27% Similarity=0.400 Sum_probs=160.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++.+|++|++. .+.+|++||+.++|||++||+|||||||||||++|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 45678888764 4689999999999999999999999999999999999776 34799999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCC--CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEV--DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
. ....+.-+..+|+..+....||+|-+.++.. |... ..++..+.++++|...++.+++... ...|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCc
Confidence 3 3455677899999877666899999998743 3221 2224445688999999999988765 367999
Q ss_pred HHHHHHHHHHHHhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1022 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
||||||.+||.|++ ++++||||||||.||...+..++++.|++++.|..|+|+.||.+.
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL 203 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL 203 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence 99999999999986 345899999999999999999999999999999999999999764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=299.45 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=164.9
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----Cccce
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRV 240 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~ 240 (1436)
++++..+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|+++|+++... ..++.
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 94 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKN 94 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence 3444555555679999999999999999999999999999999999986 3222489999999987431 12356
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
++|++|++.+++. ||+||+.|..+..+... + .+....++.+++.+|
T Consensus 95 i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~ 140 (259)
T PRK14274 95 IGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKN---------K------------------------KKLQEIVEKSLKDVA 140 (259)
T ss_pred eEEEecCCccccc-CHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcC
Confidence 9999999888875 99999988643221100 0 001122456778888
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+.+...... +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.. + .+++.++|+.++
T Consensus 141 l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~ 216 (259)
T PRK14274 141 LWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--K-YTIVIVTHNMQQ 216 (259)
T ss_pred Cchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHH
Confidence 853211111 345668999999999998766 5999999999999999999999998742 4 455557788889
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+++|++++|++|+++.+|+++++.
T Consensus 217 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 217 AARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999988763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=299.93 Aligned_cols=216 Identities=21% Similarity=0.284 Sum_probs=166.9
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----Cccce
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRV 240 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~ 240 (1436)
++++..+++.+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.
T Consensus 23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 102 (267)
T PRK14237 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKH 102 (267)
T ss_pred EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcc
Confidence 334444555678999999999999999999999999999999999998641 12499999999987532 12457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
++|++|++.+++ .||+||+.++.+..+... + .+....++.+++.+|
T Consensus 103 i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~ 148 (267)
T PRK14237 103 IGMVFQRPNPFA-KSIYENITFALERAGVKD---------K------------------------KVLDEIVETSLKQAA 148 (267)
T ss_pred eEEEecCCcccc-ccHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcC
Confidence 999999988887 699999988643221000 0 011223456788888
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
|.+..+... ++.++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.. + ++|+.++|+.++
T Consensus 149 l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~ 224 (267)
T PRK14237 149 LWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--N-YTIIIVTHNMQQ 224 (267)
T ss_pred CCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHH
Confidence 864322222 356778999999999998766 5999999999999999999999998742 4 456667788889
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.++||++++|++|++++.|+.+++.
T Consensus 225 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 225 AARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988763
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=283.19 Aligned_cols=150 Identities=29% Similarity=0.424 Sum_probs=133.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc--ccccceEEEeccCCCCCCCCCH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ--ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
..+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 369999999999999999999999999999999999865 357999999986532 2345679999999988888999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+|++. ||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.++..+.+.|++++++|.|||+++|++. ++.+..|+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~ 164 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDR 164 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999877899999999975 45556665
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=341.16 Aligned_cols=196 Identities=25% Similarity=0.378 Sum_probs=162.1
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|+++... +++.+|+|+|++++||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999986432 1246999999999999999999999999999999999976 3 47999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
.++ ..+++.++||+|++.++. -|++||+.++. | +.+++ .++++++..++.+ -.||.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 643 457889999999999886 59999998752 2 23333 3556666666554 347788876
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|+.
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~I 553 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQI 553 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEE
Confidence 4 5799999999999999999999999999999999999999999999875 4899999999984 45778883
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=307.33 Aligned_cols=209 Identities=20% Similarity=0.276 Sum_probs=168.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEcCee
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSITISGYL 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~~~G~i~i~g~~ 944 (1436)
.+.++|++..+... .+...+|+|||+.|++||++||+|+||||||||+++|+|..... ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 57888988766421 12357999999999999999999999999999999999986532 238999999987
Q ss_pred ccc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 945 KKQ---ET---FT-RISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 945 ~~~---~~---~~-~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
... .. ++ +.++||+|+. .+.|.+|+.+++........ ..+.++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 532 11 22 4799999997 68899999999876544332 234455566788999999997643322 1 22
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.+|||||||||+||++|+.+|++|++||||+|||..++..|++.|+++.++ |.|||+++||+. .+.+..|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dr 231 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDK 231 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCE
Confidence 5789999999999999999999999999999999999999999999999775 899999999975 46667788
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=290.97 Aligned_cols=196 Identities=29% Similarity=0.426 Sum_probs=157.4
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEE
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYI 244 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv 244 (1436)
.++++++.+ |+|++|++ |+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|+
T Consensus 7 ~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 7 EKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEE
Confidence 344455545 99999999 999999999999999999999999987 99999999876421 123579999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.+..... . .. .....++.+++.+||++.
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~---~---------~~------------------------~~~~~~~~~l~~~~l~~~ 124 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRK---R---------NR------------------------EDRISVDELLDLLGLDHL 124 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhC---C---------HH------------------------HHHHHHHHHHHHcCCHhH
Confidence 99998899999999998753210 0 00 011234567889999765
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+. .++.|||||||||+||+++ +++|||||+|||+.++..+.+.++++++.. +++++.++|+.+++.++
T Consensus 125 ~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 125 LNR-----YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYL 198 (214)
T ss_pred hhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHh
Confidence 554 4557999999999997766 599999999999999999999999986533 44566678888899999
Q ss_pred cCeEEEecCCeEEEec
Q 038815 400 FDDIILLSDGLIVYLG 415 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G 415 (1436)
+|++++|++|++++.|
T Consensus 199 ~d~i~~l~~G~i~~~g 214 (214)
T cd03297 199 ADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCEEEEEECCEEEecC
Confidence 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=312.91 Aligned_cols=198 Identities=29% Similarity=0.436 Sum_probs=164.9
Q ss_pred CCceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcC
Q 038815 863 EPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942 (1436)
Q Consensus 863 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g 942 (1436)
.+..++|+|+++++. +++++|++|||.|++||.+||+|+|||||||++++|.+..+ .+|+|+|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999998875 23559999999999999999999999999999999998765 479999999
Q ss_pred eeccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccC
Q 038815 943 YLKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVG 1012 (1436)
Q Consensus 943 ~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg 1012 (1436)
.+++. +.+|+.+||||||..++. -||.+|+.|+. .+.+.+ .|-++.+..++.+ -.+|.||
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 87653 568899999999988875 69999999862 233333 3445556666554 3456677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1013 ~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..| .-|||||||||+|||+++.+|+|+++|||||.||+.+...|++.+++. ..|+|+|++.|+. ++...||+.
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI 555 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKI 555 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEE
Confidence 765 469999999999999999999999999999999999999999999984 4599999999974 678889983
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=286.96 Aligned_cols=183 Identities=19% Similarity=0.277 Sum_probs=151.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+++ +|+.++|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 45677776542 234565 999999999999999999999999999999865 35799999998654
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR 1026 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR 1026 (1436)
... ++.++|++|+...++..||+||+.+...... ..+.++++++.+++.+..+.. ++.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 3458999999877788999999987543221 123567888999998766665 35799999999
Q ss_pred HHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1027 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1027 l~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
++||++|+.+|++|+|||||+|||+.+...+.+.|+...+.|+|||+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877777999999999975
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=298.14 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=164.0
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEEcCccCCCC-----CccceEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS--SLKVSGRVTYNGHNMDEF-----EPQRVAAY 243 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~y 243 (1436)
+..++++.++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|
T Consensus 9 l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~ 88 (250)
T PRK14262 9 FSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGM 88 (250)
T ss_pred eEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEE
Confidence 33444456799999999999999999999999999999999999874 112389999999887532 12457999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++ +||+||+.++....+... + ...+..++..++.+|+..
T Consensus 89 ~~q~~~~~~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14262 89 VFQKPTPFP-MSIYDNVAFGPRIHGVKS---------K------------------------HKLDRIVEESLKKAALWD 134 (250)
T ss_pred EecCCccCc-ccHHHHHHHHHHHcCCCc---------H------------------------HHHHHHHHHHHHHcCCCc
Confidence 999988887 899999988643221100 0 001122456677888754
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..+. ..+..++.||||||||++||+++ +++|||||+|||..+...+.+.|+++.+ + ++++.++|+.+++.+
T Consensus 135 ~~~~-~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~ 210 (250)
T PRK14262 135 EVKS-ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIR 210 (250)
T ss_pred hhHH-HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHH
Confidence 2111 12455678999999999998776 5999999999999999999999998753 4 456667788888999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+|++|++|+++..|+.+++.
T Consensus 211 ~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 211 IADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred hCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=306.75 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=163.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEEEEcCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAAYISQHDN 249 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 249 (1436)
..++|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 356999999999999999999999999999999999998631 12389999999998532 23567999999987
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
.++ .||+|||.|+....+. ..++ ..+...+.+++..+|.+..++.+
T Consensus 174 ~~~-~ti~eNi~~~~~~~~~----------~~~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~ 219 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNNGI----------NDRK-----------------------ILEKIVEKSLKSAALWDEVKDDL 219 (329)
T ss_pred cCC-CcHHHHHHhHHHhcCC----------ChHH-----------------------HHHHHHHHHHHHcCCcchhhhhh
Confidence 774 8999999986432110 0000 01112345677777755444555
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+ +....|||||||||+||||+ +++|||||+|||+.+...+.+.|+++.+ + .+++.++|....+.+.+|+|+
T Consensus 220 ~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Drii 295 (329)
T PRK14257 220 D-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETV 295 (329)
T ss_pred h-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEE
Confidence 4 45678999999999998877 5999999999999999999999998753 3 556668888889999999999
Q ss_pred EecCCeEEEecChHHHH
Q 038815 405 LLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++++.|+++++.
T Consensus 296 vl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 296 FFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999999874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=306.70 Aligned_cols=210 Identities=24% Similarity=0.248 Sum_probs=168.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++.+|+++.+....... ...+...+|+|||+.|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478889987764321100 00123579999999999999999999999999999999999865 3579999999875
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 038815 946 KQ------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1016 (1436)
.. ..+++.+|||+|++ .+.|.+||.+++....... ......+..+.+.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 5889999999987654332 12344556678899999999963 44554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|||+++|+.+ .+.+.-|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adr 224 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADE 224 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 689999999999999999999999999999999999999999999999764 999999999965 45556677
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=305.93 Aligned_cols=208 Identities=17% Similarity=0.214 Sum_probs=165.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-C-eeEEEEEEcCee
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGSITISGYL 944 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~-~-~~~G~i~i~g~~ 944 (1436)
++++|++..+... .+...+|+|||+.|++||++||+|+||||||||+++|+|.... + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888766421 1125699999999999999999999999999999999997642 2 358999999987
Q ss_pred ccc---cc----ccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 945 KKQ---ET----FTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 945 ~~~---~~----~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
... .. .++.++||+|++ .+.|.+||.+++........ ....++..+.+.++++.+||.+..+.+- ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CC
Confidence 532 11 124699999997 47889999988865543321 2344556678899999999975322111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|++|++||||+|||..++..+++.|+++.+ .|.|||+++|+.+ .+.+..|+
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adr 223 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHK 223 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 468999999999999999999999999999999999999999999999976 5999999999976 45667788
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=290.05 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=158.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|+.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 568999999999999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
|+.+...... .. . .+....++.+++.+||++..++ .++.||
T Consensus 90 n~~~~~~~~~-~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KL---------N------------------------AEQQEKVVDAAQQVGIADYLDR-----LPEQLS 130 (213)
T ss_pred HHHhHhhccC-Cc---------c------------------------HHHHHHHHHHHHHcCcHHHhhC-----CcccCC
Confidence 9987532100 00 0 0011234567899999766554 455799
Q ss_pred HHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 038815 339 GGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 339 GGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
|||||||+||+++ +++|||||+|||..++..+.+.|+++.+. ++++|+.++|+.+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999998766 59999999999999999999999987653 34556667888889999999999999999998
Q ss_pred ecC
Q 038815 414 LGP 416 (1436)
Q Consensus 414 ~G~ 416 (1436)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=298.48 Aligned_cols=214 Identities=22% Similarity=0.314 Sum_probs=163.8
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCCC-----ccceEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEFE-----PQRVAAY 243 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~y 243 (1436)
+..+++.+++|+|+|++|++||+++|+||||||||||+++|+|..+ |....+|+|+++|.++.... .++.++|
T Consensus 11 l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 90 (251)
T PRK14244 11 LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90 (251)
T ss_pred EEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEE
Confidence 3334445679999999999999999999999999999999999976 21123899999998764321 2457899
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++. ||+||+.+....++.... . .+....++.+++.+||.+
T Consensus 91 v~q~~~~~~~-tv~~ni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~ 137 (251)
T PRK14244 91 VFQKPNPFPK-SIYDNVAYGPKLHGLAKN--------K------------------------KKLDEIVEKSLTSVGLWE 137 (251)
T ss_pred EecCcccccC-CHHHHHHHHHHhcCCCCC--------H------------------------HHHHHHHHHHHHHcCCCc
Confidence 9999888875 999999876432211000 0 001123456788999865
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
...+.+ +..++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++. .+ .+|+.++|...++.+
T Consensus 138 ~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~ 213 (251)
T PRK14244 138 ELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKK 213 (251)
T ss_pred hhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHh
Confidence 322222 234668999999999998766 599999999999999999999999874 24 455567888889999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+|++|++|++++.|+.+++.
T Consensus 214 ~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 214 VSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999987653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=285.26 Aligned_cols=193 Identities=26% Similarity=0.351 Sum_probs=166.2
Q ss_pred ccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc----cccceEEEeccCCCC
Q 038815 888 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE----TFTRISGYCEQNDIH 963 (1436)
Q Consensus 888 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~ 963 (1436)
..+...+++|||+.+++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++... ..+.-++--+|...+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 3467889999999999999999999999999999999999876 4579999999876432 234567889999999
Q ss_pred CCCCCHHHHHHHhhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 038815 964 SPLVTVYESLLYSAWLR--------LPPE-VDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1034 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr--------~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~ 1034 (1436)
++.+||.||+..++..+ .+.. ...++-.++..++|+.+||.+.+|...| +||+||||||.|||||+
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa 165 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALA 165 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHh
Confidence 99999999998875533 2211 1234456678899999999999999864 69999999999999999
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++|++|+||||.+||.+..+..+.+.|+++.+. |.||+++-|+.. -++...|+
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dr 219 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADR 219 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccE
Confidence 999999999999999999999999999999884 799999999986 48888888
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=297.61 Aligned_cols=204 Identities=24% Similarity=0.264 Sum_probs=160.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 356777776542 346999999999999999999999999999999999975431 3579999999
Q ss_pred eecc----cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 943 YLKK----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 943 ~~~~----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
.+.. ....++.+||++|++.+++ .||+||+.+...... ....+...+.++++++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 7652 1234567999999988887 899999987643321 112233345677888888885422111111 1467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++++ ++|||+++|++. ++.+..|+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999876 689999999985 56777787
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=312.94 Aligned_cols=175 Identities=24% Similarity=0.364 Sum_probs=153.0
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccccceEEEeccCCCCCCCCCH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+|||+|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999865 357999999976432 1245789999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
+||+.|... ....+.++++++.+||.+..+.. +..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 11234688999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1050 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+.++..+++.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~ 198 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADR 198 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999875 899999999984 67788888
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=299.68 Aligned_cols=206 Identities=22% Similarity=0.251 Sum_probs=163.5
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEE
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITI 940 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i 940 (1436)
...++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|.... .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34688999988653 24699999999999999999999999999999999998542 135899999
Q ss_pred cCeeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 941 SGYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 941 ~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
+|.+... ..+++.++|++|+..+++. |++||+.+....+. ....+...+.++++++.+++.+......+. .
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~ 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-N 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-C
Confidence 9986532 2346789999999888875 99999987654321 112223345678889999986421111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+..|+
T Consensus 166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 468999999999999999999999999999999999999999999999976 799999999975 46667787
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=295.93 Aligned_cols=187 Identities=24% Similarity=0.283 Sum_probs=153.1
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC--eeEEEEEEcCeecccccc-cceEEEeccCCC--CCCCCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGSITISGYLKKQETF-TRISGYCEQNDI--HSPLVT 968 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~d~--~~~~lT 968 (1436)
+|+|+|+.+++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999986531 158999999987643222 357999999974 567789
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
+.|++.+...... ...+...+.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 112333456889999999973 44444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1046 TSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|+|||..+...+.+.|++++++ |+|||+++|+++ ++....|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i 196 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEV 196 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999998764 899999999986 566777873
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=297.18 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=161.7
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEEcCccCCCC-----CccceEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS--SLKVSGRVTYNGHNMDEF-----EPQRVAAY 243 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~y 243 (1436)
+..+++++++|+|+|++|++||+++|+|||||||||||++|+|..++ ....+|+|.++|+++... ..++.++|
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 88 (250)
T PRK14240 9 LDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGM 88 (250)
T ss_pred EEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEE
Confidence 33444445799999999999999999999999999999999998753 212489999999987531 12456899
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++ +||+||+.++....+... .. +....++.+++.+++.+
T Consensus 89 ~~q~~~~~~-~t~~~ni~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~ 134 (250)
T PRK14240 89 VFQQPNPFP-MSIYDNVAYGPRTHGIKD---------KK------------------------KLDEIVEKSLKGAALWD 134 (250)
T ss_pred EecCCccCc-ccHHHHHHHHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCch
Confidence 999988887 899999998643322100 00 01122455677777642
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
...... +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ +. +|+.++|+.+++.+
T Consensus 135 ~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~-tiii~sH~~~~~~~ 210 (250)
T PRK14240 135 EVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DY-TIVIVTHNMQQASR 210 (250)
T ss_pred hhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC-eEEEEEeCHHHHHh
Confidence 111111 244568999999999998766 5999999999999999999999998742 44 55557788888999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|+|++|++|++++.|+.+++.
T Consensus 211 ~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 211 ISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999887753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=291.60 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=151.9
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccccceEEEeccCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETFTRISGYCEQNDIH 963 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~ 963 (1436)
++.+ |||+.+++ |+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+..+
T Consensus 12 ~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 12 DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 3444 99999999 9999999999999999999999865 357999999976431 1245679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
++.+|++|++.+..... ......+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+||
T Consensus 87 ~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 87 FPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred CCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 88999999998764321 2233445688999999998766654 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.+...+.+.|++++++ |+|||+++|++. ++-+..|+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADR 201 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCE
Confidence 999999999999999999999875 899999999975 34455665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=302.47 Aligned_cols=201 Identities=24% Similarity=0.303 Sum_probs=165.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++.. ....+|+|||+.+++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47788888765310 12359999999999999999999999999999999999875 4579999999875
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 42 234677999999963 566789999998764422 123344445788999999998877765 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++.. + ...|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~ 209 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDR 209 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999875 9999999999875 3 24677
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=299.95 Aligned_cols=214 Identities=29% Similarity=0.403 Sum_probs=164.9
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCcccEEEEcCccCCCCCc---cceEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-----LKVSGRVTYNGHNMDEFEP---QRVAA 242 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~~---~~~~~ 242 (1436)
+..+.+++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++
T Consensus 7 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (272)
T PRK13547 7 LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA 86 (272)
T ss_pred EEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcE
Confidence 334444567999999999999999999999999999999999999874 1238999999998754332 34589
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..++.+||+||+.++...... ... ... .+....++.+++.+||+
T Consensus 87 ~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~---~~~-------------------------~~~~~~~~~~l~~~~l~ 136 (272)
T PRK13547 87 VLPQAAQPAFAFSAREIVLLGRYPHAR--RAG---ALT-------------------------HRDGEIAWQALALAGAT 136 (272)
T ss_pred EecccCCCCCCCcHHHHHhhccccccc--ccc---cCC-------------------------HHHHHHHHHHHHHcCcH
Confidence 999998766779999999875311100 000 000 00112356688899997
Q ss_pred ccccccccCcccCCCCHHHHHHHhhh--------------hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTG--------------PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS 388 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia--------------~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~ 388 (1436)
+..++ .+..|||||||||+|| .|.+|+|||||+|||+.+...+.+.|+++.+..+ ++|+.
T Consensus 137 ~~~~~-----~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvii 210 (272)
T PRK13547 137 ALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLA 210 (272)
T ss_pred hhhcC-----CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEE
Confidence 65443 4557999999999994 4556999999999999999999999999865334 45555
Q ss_pred EecChhhHHhhcCeEEEecCCeEEEecChHHH
Q 038815 389 LLQPAPETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 389 ~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
++|+.+++.+++|++++|++|++++.|+.+++
T Consensus 211 isH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 211 IVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred EECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 77888889999999999999999999998776
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=296.09 Aligned_cols=206 Identities=22% Similarity=0.252 Sum_probs=161.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEEcCccCCCCCc-cceEEEEcCCCC--CCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFEP-QRVAAYISQHDN--HIG 252 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 252 (1436)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|.++..... ++.++|++|++. +.+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 3569999999999999999999999999999999999998710 139999999998754332 256999999974 456
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
.+|+.+++.+.++..+.. . ....++.+++.+||.+.. + +-+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~-~-~~~~ 136 (254)
T PRK10418 95 LHTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAA-R-VLKL 136 (254)
T ss_pred cccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChh-h-hhhc
Confidence 689999987643221100 0 012245678899997521 1 1124
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+.+|++++|+
T Consensus 137 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 4567999999999998766 59999999999999999999999998653 34556667888888999999999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (254)
T PRK10418 216 HGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=298.45 Aligned_cols=215 Identities=19% Similarity=0.270 Sum_probs=163.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC--C---ccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF--E---PQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~--~---~~~~~ 241 (1436)
+++..++++.++|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|.++|.++... . .++.+
T Consensus 17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i 96 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV 96 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence 344444445679999999999999999999999999999999999986 2112389999999887421 1 24579
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++ +||+||+.+....... ... .+....++.+++.+||
T Consensus 97 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l 142 (260)
T PRK10744 97 GMVFQKPTPFP-MSIYDNIAFGVRLFEK---------LSR------------------------AEMDERVEWALTKAAL 142 (260)
T ss_pred EEEecCCccCc-CcHHHHHhhhHhhcCC---------CCH------------------------HHHHHHHHHHHHHcCC
Confidence 99999988777 8999999886432210 000 0011235667888887
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
........ ++.+..|||||||||+||+++ +++|||||+|||..++..+.+.|+++.. + ++||.++|+..++
T Consensus 143 ~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~ 218 (260)
T PRK10744 143 WNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--D-YTVVIVTHNMQQA 218 (260)
T ss_pred ChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHH
Confidence 42111111 234568999999999998776 4999999999999999999999998742 4 4566678888889
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|++++|++|+++..|+.+++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 219 ARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999988763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=297.85 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=161.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC-e--eEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~-~--~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.++|||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 477888887653 246999999999999999999999999999999999975432 2 479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.++|++|++.+++ .||+||+.+....+. ..+..+..+.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 86531 234567999999988887 899999987654332 1123333456788899998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~ 218 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDF 218 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCe
Confidence 468999999999999999999999999999999999999999999999865 699999999975 56667777
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=300.95 Aligned_cols=214 Identities=23% Similarity=0.330 Sum_probs=162.7
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----Cccce
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRV 240 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~ 240 (1436)
++++..+++.+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~ 95 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhc
Confidence 3445555555679999999999999999999999999999999999986310 1399999999886421 12356
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
++|++|++.+++ .||+||+.+++...+.. . +.+..++.+++.++
T Consensus 96 i~~v~q~~~l~~-~tv~enl~~~~~~~~~~----------~-------------------------~~~~~~~~~l~~~~ 139 (269)
T PRK14259 96 IGMVFQQPNPFP-KSIYENIAFGARINGYT----------G-------------------------DMDELVERSLRKAA 139 (269)
T ss_pred eEEEccCCccch-hhHHHHHhhhhhhcCCc----------H-------------------------HHHHHHHHHHHHhC
Confidence 999999998887 59999999865432110 0 00112344567776
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+...... .-+..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++||.++|+..+
T Consensus 140 l~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~ 215 (269)
T PRK14259 140 VWDECKD-KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQ 215 (269)
T ss_pred Ccchhhh-hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHH
Confidence 6421111 11345668999999999998776 5999999999999999999999998742 4 456667888899
Q ss_pred HHhhcCeEEEecC-----------CeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSD-----------GLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~-----------G~iv~~G~~~~~~ 421 (1436)
+.+++|++++|++ |++++.|+++++.
T Consensus 216 ~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 216 AVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred HHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999999999996 6789999998874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=327.34 Aligned_cols=201 Identities=26% Similarity=0.327 Sum_probs=166.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|+|+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788877653 3569999999999999999999999999999999999865 34799999997653
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 947 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 947 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ..++.+||++|+..+++.+||+|++.+....+.. ...+.++.++.++++++.+||.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245699999999889999999999886432211 11223334456889999999988777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++.|.|||+++|++. ++-+..|+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~ 210 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD 210 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999974 46667787
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=299.34 Aligned_cols=215 Identities=26% Similarity=0.312 Sum_probs=167.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCCC----ccceEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFE----PQRVAA 242 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~----~~~~~~ 242 (1436)
+++..+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++.+.. .++.++
T Consensus 25 ~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~ 104 (276)
T PRK14271 25 VNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG 104 (276)
T ss_pred eeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence 44555556678999999999999999999999999999999999998751 123899999998875431 245789
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ +||+||+.++...... ... .+....+..+++.+||.
T Consensus 105 ~v~q~~~l~~-~tv~eni~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~ 150 (276)
T PRK14271 105 MLFQRPNPFP-MSIMDNVLAGVRAHKL---------VPR------------------------KEFRGVAQARLTEVGLW 150 (276)
T ss_pred EeccCCccCC-ccHHHHHHHHHHhccC---------CCH------------------------HHHHHHHHHHHHHcCCC
Confidence 9999988887 8999999876432110 000 00112235567888886
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..++.. +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.
T Consensus 151 ~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~ 226 (276)
T PRK14271 151 DAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAA 226 (276)
T ss_pred chhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHH
Confidence 5332222 245668999999999998776 5999999999999999999999998753 3 46666788889999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|++++|++|++++.|+++++.
T Consensus 227 ~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 227 RISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=300.52 Aligned_cols=203 Identities=22% Similarity=0.360 Sum_probs=160.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. +++.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578888887653 12469999999999999999999999999999999999865 3579999999875
Q ss_pred ccccccceEEEeccCCCCC--CCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 946 KQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
.....++.++|++|+..+. ...+++|++.+....... .........+.++++++.+||.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234699999997542 234788988653211000 00111223446788999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~ 211 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDY 211 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877999999999974 45566666
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=295.58 Aligned_cols=201 Identities=24% Similarity=0.275 Sum_probs=160.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCe---eEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~---~~G~i~i~g 942 (1436)
.+.++|+++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 356777776542 3569999999999999999999999999999999999764322 379999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ..+++.+||++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 86532 2345679999999999999999999987543221 1122333455677777777642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 216 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDT 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999864 799999999976 46666787
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=295.56 Aligned_cols=215 Identities=23% Similarity=0.299 Sum_probs=162.6
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++++++|+|+|+.|++||+++|+||||||||||||+|+|.++|.. ..+|+|.++|.++... ..++.++
T Consensus 9 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 88 (252)
T PRK14272 9 DVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVG 88 (252)
T ss_pred eeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeE
Confidence 34444445679999999999999999999999999999999999987531 1379999999887531 1235689
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++.+||.||+.++....+... + ++.....+..++.+++.
T Consensus 89 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14272 89 MVFQKPNPFPTMSVFDNVVAGLKLAGIRD----------R-----------------------DHLMEVAERSLRGAALW 135 (252)
T ss_pred EEeccCccCcCCCHHHHHHHHHHhcCCCC----------H-----------------------HHHHHHHHHHHHHcCcc
Confidence 99999999999999999987543221100 0 00111233445555553
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..... .-+..++.|||||||||+||+++ +++|||||+|||..++..+.+.|+++.+ + ++++.++|+..++.
T Consensus 136 ~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~ 211 (252)
T PRK14272 136 DEVKD-RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAA 211 (252)
T ss_pred hhhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHH
Confidence 21100 01234567999999999998766 5999999999999999999999998742 4 55666788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++|++++.|+++++.
T Consensus 212 ~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 212 RVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=296.05 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=162.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCC-C---CccceEEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDE-F---EPQRVAAY 243 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~-~---~~~~~~~y 243 (1436)
++..+++++.+|+|+|+.|++||+++|+||||||||||+++|+|..++. ...+|+|.++|.++.. . ..++.++|
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 87 (249)
T PRK14253 8 NLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGM 87 (249)
T ss_pred ccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeE
Confidence 3344444567999999999999999999999999999999999998752 1238999999987642 1 12456999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++ .||.||+.++....+... +. .....++..++.+|+.+
T Consensus 88 ~~q~~~~~~-~tv~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~~~~~~l~~ 133 (249)
T PRK14253 88 VFQKPNPFP-MSIYENVAYGLRAQGIKD---------KK------------------------VLDEVVERSLRGAALWD 133 (249)
T ss_pred EecCCCcCc-ccHHHHHHhHHHhcCCCc---------hH------------------------HHHHHHHHHHHHcCCch
Confidence 999988887 899999988643221100 00 01122345667777753
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
...... +..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+
T Consensus 134 ~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~ 209 (249)
T PRK14253 134 EVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARR 209 (249)
T ss_pred hhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHH
Confidence 221111 344668999999999998766 4999999999999999999999999753 3 455567788889999
Q ss_pred hcCeEEEecCCeEEEecChHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+|++++|++|++++.|+.+++
T Consensus 210 ~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 210 ISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999988765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=295.93 Aligned_cols=205 Identities=21% Similarity=0.259 Sum_probs=163.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.++++|+++.+. +..+|+|+|+.+++||++||+|+||||||||+++|+|...+. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478888887653 236999999999999999999999999999999999976532 2469999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.++|++|+..+++ .|++||+.+....... .+..+..+.++++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 76421 234567999999988887 8999999876433211 12233345688999999986432222222 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|+|||+++|++. ++-+..|+
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~ 220 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDF 220 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCE
Confidence 8999999999999999999999999999999999999999999999875 4899999999985 57778888
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=298.24 Aligned_cols=204 Identities=22% Similarity=0.266 Sum_probs=163.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~g 942 (1436)
.+.++|+++.++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..++ ++.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578899988763 35799999999999999999999999999999999997542 13589999999
Q ss_pred eeccc----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 943 YLKKQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 943 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
.+... ...++.++|++|+..+++ .||+||+.+...... ..+.++....++++++.++|.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 86532 234667999999988887 899999987643221 12333444566788999998753322211 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+..|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56677787
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=293.82 Aligned_cols=213 Identities=20% Similarity=0.245 Sum_probs=163.0
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEEE
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAAY 243 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~y 243 (1436)
+..++.++.+|+|+|++|++|++++|+|||||||||||++|+|.++|. .+.+|+|.++|.++... ..++.++|
T Consensus 10 l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~ 89 (251)
T PRK14249 10 VNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGM 89 (251)
T ss_pred EEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEE
Confidence 334444567999999999999999999999999999999999999874 12369999999886432 12467999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++. ||+||+.++...++... .+ +.....+..++.+||.+
T Consensus 90 v~q~~~~~~~-tv~enl~~~~~~~~~~~----------~~-----------------------~~~~~~~~~l~~~~l~~ 135 (251)
T PRK14249 90 VFQQPNPFPK-SIFDNVAFGPRMLGTTA----------QS-----------------------RLDEVVEKSLRQAALWD 135 (251)
T ss_pred EecCCccCcC-cHHHHHhhHHHhcCCCh----------hh-----------------------HHHHHHHHHHHHhCCch
Confidence 9999988875 99999998654321100 00 01112344566667643
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..... .+..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+
T Consensus 136 ~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tilivsh~~~~~~~ 211 (251)
T PRK14249 136 EVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QN-YTIAIVTHNMQQAAR 211 (251)
T ss_pred hhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHh
Confidence 21111 2345678999999999998776 499999999999999999999999873 24 556667888999999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|++++|++|++++.|+.+++.
T Consensus 212 ~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 212 ASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999988763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=338.59 Aligned_cols=201 Identities=27% Similarity=0.391 Sum_probs=159.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++..+ ++.++||+|++.+|+
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~- 540 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS- 540 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-
Confidence 357999999999999999999999999999999999999998 9999999999987664 578999999997776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.|++|||.++.. . +.+...++....+ .+..++ .+++..||.+|+.
T Consensus 541 gTI~eNi~~~~~-~-------------------------~~e~i~~al~~a~------l~~~i~--~lp~G~dt~ige~- 585 (686)
T TIGR03797 541 GSIFENIAGGAP-L-------------------------TLDEAWEAARMAG------LAEDIR--AMPMGMHTVISEG- 585 (686)
T ss_pred ccHHHHHhcCCC-C-------------------------CHHHHHHHHHHcC------cHHHHH--hccccccccccCC-
Confidence 599999988521 0 0011111111000 111122 2566789999965
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...||||||||++||||+ +++||||||+||+.+..++.+.|++. ++|+|+ ++|.. +..+.+|+|++|++
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDA 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEEC
Confidence 468999999999999877 49999999999999999999999874 456655 45544 55677999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+++++.+
T Consensus 660 G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 660 GRVVQQGTYDELMA 673 (686)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=301.54 Aligned_cols=207 Identities=30% Similarity=0.450 Sum_probs=169.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc---ceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ---RVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|+||.+.+||-++|+||||||||||.|+|.|..+|. +|.|.++|.+++.+++. +.+||.||+-.+|+.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence 467999999999999999999999999999999999999987 99999999999888764 789999999888875
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
||.|||.= .. ++.|.+...+++...+. + |. ++.|++.+||.||+.
T Consensus 425 -TIaeNIaR---f~----------------------~~~d~~kIieAA~lAgv-H----el---Il~lP~GYdT~iG~~- 469 (580)
T COG4618 425 -TIAENIAR---FG----------------------EEADPEKVIEAARLAGV-H----EL---ILRLPQGYDTRIGEG- 469 (580)
T ss_pred -cHHHHHHh---cc----------------------ccCCHHHHHHHHHHcCh-H----HH---HHhCcCCccCccCCC-
Confidence 99999951 11 12233334444332221 1 22 456999999999975
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
..+||||||||+++|||+ +++||||-++||+.....+.+.+.+... .++|+|+.. | .+.+...+|+|++|++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvia-H-RPs~L~~~Dkilvl~~ 546 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIA-H-RPSALASVDKILVLQD 546 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEe-c-CHHHHhhcceeeeecC
Confidence 458999999999998876 5999999999999999999999998643 456665543 3 4678899999999999
Q ss_pred CeEEEecChHHHHHHH
Q 038815 409 GLIVYLGPRELVLDFF 424 (1436)
Q Consensus 409 G~iv~~G~~~~~~~~F 424 (1436)
|++-.+|++++++...
T Consensus 547 G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 547 GRIAAFGPREEVLAKV 562 (580)
T ss_pred ChHHhcCCHHHHHHHh
Confidence 9999999999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=332.86 Aligned_cols=211 Identities=27% Similarity=0.397 Sum_probs=167.4
Q ss_pred ccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEc
Q 038815 170 ILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYIS 245 (1436)
Q Consensus 170 ~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~ 245 (1436)
++.-+++ ++++|+|+|++++|||.++|+||+|||||||++.|.|.++|+ +|+|.+||.++++... ++.++||+
T Consensus 333 ~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~ 409 (567)
T COG1132 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVS 409 (567)
T ss_pred EEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEc
Confidence 3444444 578999999999999999999999999999999999999997 9999999999887755 57899999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+|. -||+|||.++.. +...++..++.... ..+..+. .+++..
T Consensus 410 Qd~~LF~-~TI~~NI~~g~~-------------------------~at~eei~~a~k~a------~~~d~I~--~lp~g~ 455 (567)
T COG1132 410 QDPLLFS-GTIRENIALGRP-------------------------DATDEEIEEALKLA------NAHEFIA--NLPDGY 455 (567)
T ss_pred ccceeec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHh------ChHHHHH--hCcccc
Confidence 9988887 799999998631 01111222221111 0122233 357788
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
||.||+ ....||||||||++||||. +|+||||||+||+.+...|.+.+++.. .++|+++ +.|..+.+.+ +
T Consensus 456 dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-a 530 (567)
T COG1132 456 DTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-A 530 (567)
T ss_pred cceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-C
Confidence 999994 4567999999999999887 499999999999999999999999764 3467777 5665555554 9
Q ss_pred CeEEEecCCeEEEecChHHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~ 422 (1436)
|+|++|++|++++.|+++++..
T Consensus 531 D~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 531 DRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=326.70 Aligned_cols=202 Identities=26% Similarity=0.289 Sum_probs=165.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 367788877652 3569999999999999999999999999999999999865 3579999999865
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhc----CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 946 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLR----LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
... ..++.+|||+|+..+++.+||+|++.+..... .....+.++..+.++++++.+||.+..+..+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 321 12356999999998889999999998753211 0001123344567889999999988777764 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. .+-+..|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~ 214 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDR 214 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999888999999999964 45556777
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=297.77 Aligned_cols=200 Identities=23% Similarity=0.289 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCC-CCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDN-HIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 253 (1436)
..+|+|+|++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 45999999999999999999999999999999999999987 999999998875422 2457999999974 6778
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||.||+.++....+.. ++ +....++.+++.+||.+..++ .
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 137 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------RE------------------------EMIKRVDEALLAVNMLDFKTR-----E 137 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhC-----C
Confidence 89999998754321110 00 011235678889999765554 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++..+ ++|+.++|..+++. .+|+|++|++
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 567999999999998776 4999999999999999999999998865334 45555778888876 6999999999
Q ss_pred CeEEEecChHHHH
Q 038815 409 GLIVYLGPRELVL 421 (1436)
Q Consensus 409 G~iv~~G~~~~~~ 421 (1436)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=294.38 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=158.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.|++|++++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 366788876542 246999999999999999999999999999999999976531 2369999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.++|++|+..+++. |++||+.+....+.. ...+...+.++++++.+++.+..+..... .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 76532 2346789999999988875 999999887543311 11222345577788888875421111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++-+..|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~ 215 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW 215 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence 899999999999999999999999999999999999999999999984 5899999999975 34455676
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=295.04 Aligned_cols=204 Identities=25% Similarity=0.269 Sum_probs=160.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~g 942 (1436)
.+.++|+++.++ ++.+|+|+|+.++|||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477888887653 346999999999999999999999999999999999964321 2479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.++|++|+..+++. ||+||+.|....+.. ....+.++.++++++.+++.+........ .+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHD-SAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhc-Chh
Confidence 87532 2345679999999988874 999999987554321 12233345678889988885321111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~ 217 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence 8999999999999999999999999999999999999999999999876 689999999975 35566777
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=285.69 Aligned_cols=190 Identities=28% Similarity=0.408 Sum_probs=163.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-------ccceEEEEcCCCCCCCCCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-------PQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 255 (1436)
++++..+.-.+|+|-|+||||||||+|+|+|+..|+ +|.|.+||..+.... .+|.+|||+|+..+||.+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 677777665899999999999999999999999998 999999998763322 2578999999999999999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+.||.|+...- .....|.+...||++|..+ +++.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYPG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCCC
Confidence 999999974211 0112467889999998776 5677
Q ss_pred CCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||||+. |+||||.+.||-....+++-.|..+.++. +.-|+.++|...|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 89999999999999885 99999999999999999999999998764 4566778999999999999999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999999875
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=296.46 Aligned_cols=212 Identities=20% Similarity=0.262 Sum_probs=165.3
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
..+.++++..+|+|+|+.++|||+++|+||||||||||+++|+|.++|. ...+|+|+++|+++... ..++.++
T Consensus 13 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 92 (261)
T PRK14263 13 LDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG 92 (261)
T ss_pred eEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE
Confidence 3344555678999999999999999999999999999999999999761 11389999999987432 1245689
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++..+ .+||+||+.++....+.. .+....++.+++.+||.
T Consensus 93 ~v~q~~~~~-~~tv~enl~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~l~ 136 (261)
T PRK14263 93 MVFQQPNPF-SMSIFDNVAFGLRLNRYK-----------------------------------GDLGDRVKHALQGAALW 136 (261)
T ss_pred EEecCCccc-cccHHHHHHHHHhhcCch-----------------------------------HHHHHHHHHHHHHcCCc
Confidence 999998777 599999999865332100 00112345677888886
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+... +..++.||||||||++||+++ +++|||||+|||+.++.++.+.|+++. .+ ++++.++|+..++.
T Consensus 137 ~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~ 212 (261)
T PRK14263 137 DEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KD-YTIALVTHNMQQAI 212 (261)
T ss_pred hhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHH
Confidence 4332222 245678999999999998776 599999999999999999999999874 24 55666788888999
Q ss_pred hhcCeEEEec--------CCeEEEecChHHHH
Q 038815 398 DLFDDIILLS--------DGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~--------~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|+ +|++++.|+.+++.
T Consensus 213 ~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 213 RVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred HhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999995 89999999988763
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=303.52 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEc
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITIS 941 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~ 941 (1436)
..+.++|+++.+.. +.+.+|+|+|+.|++||++||+|||||||||||++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36889999887641 124699999999999999999999999999999999997531 2357999999
Q ss_pred Ceeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038815 942 GYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD-SETRKMFIEEIMELVELNPLRQSLVGLPG 1015 (1436)
Q Consensus 942 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~-~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1015 (1436)
|.+... ...++.++||+|++.+++ .|++||+.|..... ..+ .+...+.++++++.++|.+-.++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 987642 235678999999988875 79999999864322 122 2223445778899998864333444443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+.+|+||+|||||+|||+.+...+.++|+++++ ++|||+++|++. .+.+..|+
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Dr 293 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDE 293 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 468999999999999999999999999999999999999999999999876 799999999974 35566787
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=324.81 Aligned_cols=202 Identities=28% Similarity=0.335 Sum_probs=166.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ ++.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 367788877653 3469999999999999999999999999999999999865 3579999999765
Q ss_pred cc----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
.. ..+++.+||++|+..+++.+||+||+.+....+.....+..+..+.++++++.++|.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 32 124567999999998899999999998853211111122334456788999999998766655 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||+||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+..|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999888999999999975 45566777
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=289.87 Aligned_cols=180 Identities=27% Similarity=0.336 Sum_probs=147.1
Q ss_pred cCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCC
Q 038815 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 889 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
++.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345789999999999999999999999999999999999765 457999999975321 111233456789
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|+||+.+....+. .+.++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987654321 223344556788999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+.++..+.+.|++++++|+|||+++|++. ++-+..|+
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 211 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDR 211 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999998777899999999974 34444555
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=304.28 Aligned_cols=211 Identities=16% Similarity=0.181 Sum_probs=162.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEEcCe
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGSITISGY 943 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~~~~G~i~i~g~ 943 (1436)
-+.++|++..+... .+...+|+|||+.|++||++||+|+||||||||+++|+|.... ...+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36778887766421 1235799999999999999999999999999999999997642 245799999998
Q ss_pred eccc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 944 LKKQ---ET----FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPE---VDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 944 ~~~~---~~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
+... .. .++.++||+|+.. +.|.+||.+++.+......... ....+..+.+.++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 6532 11 1346999999975 6788999999975422111000 11223456788999999997533211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
...+..|||||||||+||++|+.+|+||++||||+|||+.++..+++.|+++.++ |.|||+++|+.+ .+.+..|+
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 1124689999999999999999999999999999999999999999999999874 999999999974 45566777
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=294.08 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=163.2
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+.+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 90 (253)
T PRK14261 11 NLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIG 90 (253)
T ss_pred eeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEE
Confidence 3444445567999999999999999999999999999999999987531 11389999999987542 1245689
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++. ||+||+.|+.+..+... . .+.+..++.+++.++|.
T Consensus 91 ~~~q~~~~~~~-tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~ 136 (253)
T PRK14261 91 MVFQRPNPFPK-SIYENVAYGPRIHGEKN---------K------------------------KTLDTIVEKSLKGAALW 136 (253)
T ss_pred EEecCCccCcc-cHHHHHHhhHHhcCCCC---------H------------------------HHHHHHHHHHHHHhcCc
Confidence 99999988875 99999998654321100 0 00112244567777774
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+...+. -+..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + .+++.++|+.+++.
T Consensus 137 ~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~ 212 (253)
T PRK14261 137 DEVKDR-LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAA 212 (253)
T ss_pred hhhHHH-hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHH
Confidence 321111 1345668999999999998766 5999999999999999999999998753 3 45555788888899
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+|++++|++|+++..|+.+++.
T Consensus 213 ~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 213 RVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred hhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999987763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=293.51 Aligned_cols=204 Identities=24% Similarity=0.318 Sum_probs=158.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~~-~~~G~i~i~g 942 (1436)
.+.++|+++.+. .+.+|+|+|+++++||++||+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 367888877653 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+... ...++.+||++|+..+++ .||+||+.+....+.. ...+...+.+.+.++.+++......... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 86531 234567999999988887 6999999886543321 1122223456778888877421111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+..|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCE
Confidence 8999999999999999999999999999999999999999999999866 589999999975 46667777
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=294.38 Aligned_cols=198 Identities=21% Similarity=0.266 Sum_probs=158.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC--eeEEEEEEcCe
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGSITISGY 943 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~--~~~G~i~i~g~ 943 (1436)
.++++|+++.++ +.+|+|+|+.+++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578888887541 35899999999999999999999999999999999986531 15799999998
Q ss_pred ecccccc-cceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCC
Q 038815 944 LKKQETF-TRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP---LRQSLVGLPGVS 1017 (1436)
Q Consensus 944 ~~~~~~~-~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 1017 (1436)
+...... ++.++||+|++. +.+..|+.+++.+.+.... ... ..+.++++++.++|.+ ..+.. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 357999999974 4566799999876443221 111 2256789999999976 23443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++++++ |+|||+++|++.. +.+..|+
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~ 210 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADD 210 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 8999999999753 5555676
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=298.37 Aligned_cols=198 Identities=24% Similarity=0.285 Sum_probs=160.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~---~~~~G~i~i~g 942 (1436)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478888887653 24699999999999999999999999999999999997542 13579999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.++|++|+..+++. ||+||+.+....+. ... ...+.++++++.++|.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 76521 2346789999999887775 99999987654332 122 23456889999999853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|+||+|||||+|||..+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 468999999999999999999999999999999999999999999999976 489999999975 45556776
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=294.64 Aligned_cols=216 Identities=24% Similarity=0.285 Sum_probs=166.2
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..++....+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +..+|+|.++|+++... ..++.++
T Consensus 12 nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 91 (261)
T PRK14258 12 NLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVS 91 (261)
T ss_pred eEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEE
Confidence 3444444457999999999999999999999999999999999998873 23489999999886321 1245699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ +||+||+.+.....+... . .+....+..+++.+|+.
T Consensus 92 ~~~q~~~l~~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~ 137 (261)
T PRK14258 92 MVHPKPNLFP-MSVYDNVAYGVKIVGWRP---------K------------------------LEIDDIVESALKDADLW 137 (261)
T ss_pred EEecCCccCc-ccHHHHHHHHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCc
Confidence 9999988887 899999987643211100 0 00112345678888875
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+. .-++.+..|||||||||+||+++ +++|||||+|||..+...+.+.|++++...+ ++|+.++|+..++.
T Consensus 138 ~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~ 215 (261)
T PRK14258 138 DEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVS 215 (261)
T ss_pred chhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHH
Confidence 42211 12345668999999999998766 5999999999999999999999998765334 45555788889999
Q ss_pred hhcCeEEEecC-----CeEEEecChHHHH
Q 038815 398 DLFDDIILLSD-----GLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~-----G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++ |+++++|+++++.
T Consensus 216 ~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 216 RLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 99999999999 9999999998874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=323.87 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=164.3
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 45677776542 35699999999999999999999999999999999998653224899999998654
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCC
Q 038815 947 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lS 1020 (1436)
.. ..++.+|||+|++.+++.+||+|++.+....+... ....++..+.++++++.++|.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 21 12356999999998889999999998764332111 122333456788999999998654 343 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|.|||+++|++. ++-+..|+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~ 210 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDT 210 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999888999999999975 45566787
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=298.89 Aligned_cols=215 Identities=20% Similarity=0.317 Sum_probs=162.3
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~ 241 (1436)
+++..++....+|+|+|++|++||+++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.+
T Consensus 43 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i 122 (286)
T PRK14275 43 KNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKI 122 (286)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcE
Confidence 344444445679999999999999999999999999999999999854 3001299999999886432 124579
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++. ||+||+.++....+... . ......++.+++.+|+
T Consensus 123 ~~v~q~~~l~~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l 168 (286)
T PRK14275 123 GMVFQKPNPFPK-SIFDNIAYGPRLHGIND---------K------------------------KQLEEIVEKSLRKAAL 168 (286)
T ss_pred EEECCCCCCCcc-CHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHhCC
Confidence 999999988875 99999998643321100 0 0011224456777777
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
...... .-+..+..|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.. + ++|+.++|+.+++
T Consensus 169 ~~~l~~-~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~ 244 (286)
T PRK14275 169 WDEVSD-RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQA 244 (286)
T ss_pred ccchhh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHH
Confidence 421000 11344568999999999998776 4999999999999999999999998753 3 4566688888999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|++++|++|++++.|+.+++.
T Consensus 245 ~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 245 SRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=294.00 Aligned_cols=201 Identities=25% Similarity=0.310 Sum_probs=160.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~-~~~G~i~i~g 942 (1436)
.+.++|+++.+. .+.+|+|+|+.|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 467888887653 24699999999999999999999999999999999997641 1 2589999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 86531 234567999999988776 799999987643321 1122233456788899999853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|||+++|++. ++.+..|+.
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i 216 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQT 216 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEE
Confidence 468999999999999999999999999999999999999999999999854 799999999975 466667773
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=294.01 Aligned_cols=214 Identities=21% Similarity=0.321 Sum_probs=163.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++.+++|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++
T Consensus 9 ~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~ 88 (251)
T PRK14251 9 DVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVG 88 (251)
T ss_pred eeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEE
Confidence 34444455679999999999999999999999999999999999986 2112389999999886431 1245699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ .||+||+.++....+... . ......++.+++.+||.
T Consensus 89 ~~~q~~~~~~-~tv~enl~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14251 89 MVFQQPTPFP-FSVYDNVAYGLKIAGVKD----------K-----------------------ELIDQRVEESLKQAAIW 134 (251)
T ss_pred EEecCCccCC-CcHHHHHHHHHHHcCCCC----------H-----------------------HHHHHHHHHHHHHcCCC
Confidence 9999987776 799999987643221100 0 00112245677888884
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..... .-+..++.||||||||++||+++ +++|||||+|||+.+...+.+.|+++.+ + ++|+.++|..+++.
T Consensus 135 ~~~~~-~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~ 210 (251)
T PRK14251 135 KETKD-NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--Q-YTFIMVTHNLQQAG 210 (251)
T ss_pred cchHH-HhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--C-CeEEEEECCHHHHH
Confidence 32100 11345668999999999998766 5999999999999999999999998743 4 55666788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|+|++|++|+++..|+.+++.
T Consensus 211 ~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 211 RISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred hhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999987763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=296.20 Aligned_cols=215 Identities=20% Similarity=0.265 Sum_probs=161.4
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~ 241 (1436)
+++..++++..+|+|+|++|++||+++|+|||||||||||++|+|..+ +....+|+|.++|.++... ..++.+
T Consensus 25 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 104 (268)
T PRK14248 25 KDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREI 104 (268)
T ss_pred EEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccE
Confidence 344444455679999999999999999999999999999999999864 1111389999999987532 123569
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++. ||+||+.++....+... .. ..+..+...++.+|+
T Consensus 105 ~~v~q~~~~~~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l 150 (268)
T PRK14248 105 GMVFQKPNPFPK-SIYNNITHALKYAGERR---------KS------------------------VLDEIVEESLTKAAL 150 (268)
T ss_pred EEEecCCccCcc-cHHHHHHHHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCC
Confidence 999999888875 99999987643211000 00 001123446777777
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
.+.... .-+..+..||||||||++||+++ +++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++
T Consensus 151 ~~~~~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~ 226 (268)
T PRK14248 151 WDEVKD-RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQA 226 (268)
T ss_pred CcchHH-HHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHH
Confidence 421111 11345668999999999998776 5999999999999999999999999743 4 4556677888889
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.+++|+|++|++|++++.|+.+++.
T Consensus 227 ~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 227 LRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999987763
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=293.35 Aligned_cols=210 Identities=24% Similarity=0.316 Sum_probs=162.5
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc-----CCCCCc-------
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN-----MDEFEP------- 237 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~~~~------- 237 (1436)
++..+++...+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +.....
T Consensus 8 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (253)
T TIGR02323 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLM 84 (253)
T ss_pred eeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhh
Confidence 3344444567999999999999999999999999999999999999887 9999999976 443221
Q ss_pred cceEEEEcCCCC--CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHH
Q 038815 238 QRVAAYISQHDN--HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY 315 (1436)
Q Consensus 238 ~~~~~yv~Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1436)
++.++|++|++. ..+.+|+.||+.+........ . . .+....++.+
T Consensus 85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~-~--------~------------------------~~~~~~~~~~ 131 (253)
T TIGR02323 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR-H--------Y------------------------GNIRAAAHDW 131 (253)
T ss_pred hcceEEEEeCcccccCccccHHHHHHHHHHHhccc-c--------h------------------------HHHHHHHHHH
Confidence 245899999874 456679999997532110000 0 0 0011235678
Q ss_pred HHHcCCcc-cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 038815 316 LKVLGLDI-CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389 (1436)
Q Consensus 316 l~~lgL~~-~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~ 389 (1436)
++.+|+.+ ..++ .++.|||||||||+||+++ +++|||||+|||+.++..+.+.|++..+.. +.++|.+
T Consensus 132 l~~l~l~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~v 205 (253)
T TIGR02323 132 LEEVEIDPTRIDD-----LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIV 205 (253)
T ss_pred HHHcCCChhhhhc-----CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 89999963 4443 4567999999999998776 499999999999999999999999876533 4455557
Q ss_pred ecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 390 LQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 390 ~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 206 sH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 206 THDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred eCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 88888999999999999999999999887663
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=296.76 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=163.6
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+.+++++|+|+|+.|++||+++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++
T Consensus 30 nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~ 109 (272)
T PRK14236 30 NLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG 109 (272)
T ss_pred EEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE
Confidence 4444444567999999999999999999999999999999999998741 02399999999987531 1246789
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++. ||+||+.+.....+... +. ..+..++.+++.+|+.
T Consensus 110 ~v~q~~~l~~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~ 155 (272)
T PRK14236 110 MVFQRPNPFPK-SIYENVVYGLRLQGINN---------RR------------------------VLDEAVERSLRGAALW 155 (272)
T ss_pred EEecCCccCcc-cHHHHHHHHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCCC
Confidence 99999888886 99999988654321100 00 0112245567777875
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
....+.. +..++.|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ +. +++.++|+.+++.
T Consensus 156 ~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~-tiiivtH~~~~~~ 231 (272)
T PRK14236 156 DEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KY-TIVIVTHNMQQAA 231 (272)
T ss_pred hhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEeCCHHHHH
Confidence 3211111 345678999999999998776 4999999999999999999999999853 44 5555778888999
Q ss_pred hhcCeEEEecCCeEEEecChHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
+.+|+|++|++|++++.|+.+++
T Consensus 232 ~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 232 RVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred hhCCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999988765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=298.50 Aligned_cols=200 Identities=21% Similarity=0.272 Sum_probs=159.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~-~~~~G~i~i~g 942 (1436)
.+.++|+++.+. .+.+|+|+|+.|++||+++|+|||||||||||++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578888887653 2459999999999999999999999999999999999642 1 12579999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ...++.+||++|++.+++. ||+||+.+....+.. .+.....+.+.++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 76531 1245679999999888774 999999986543211 122233456778888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~ 250 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDY 250 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999865 689999999975 45566777
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=295.94 Aligned_cols=203 Identities=27% Similarity=0.342 Sum_probs=163.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCC--
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHD-- 248 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 248 (1436)
++.+|+|+|++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++|++|++
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 367999999999999999999999999999999999999887 9999999998755432 45799999997
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t 327 (1436)
.+++..|+.|++.+...... .... .+....++.+++.+|++ ...+
T Consensus 101 ~~~~~~t~~~~l~~~~~~~~---------~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~- 146 (268)
T PRK10419 101 AVNPRKTVREIIREPLRHLL---------SLDK------------------------AERLARASEMLRAVDLDDSVLD- 146 (268)
T ss_pred ccCCCCCHHHHHHHHHHhhc---------cCCH------------------------HHHHHHHHHHHHHcCCChhHhh-
Confidence 36678999999976432100 0000 01122356788899996 3444
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
..++.||||||||++||+++ +++|||||+|||..+...+.+.|+++.+.. +++++.++|+..++.+++|+
T Consensus 147 ----~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 147 ----KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQR 221 (268)
T ss_pred ----CCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCCE
Confidence 34567999999999998776 599999999999999999999999886533 45566678888899999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
+++|++|++++.|+.+++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=294.92 Aligned_cols=200 Identities=23% Similarity=0.234 Sum_probs=158.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee-
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL- 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~- 944 (1436)
.++++|+++.++ ++.+|+|+|+.++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 477888887653 2469999999999999999999999999999999999865 357999999976
Q ss_pred ----ccc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 038815 945 ----KKQ---ET----FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSL 1010 (1436)
Q Consensus 945 ----~~~---~~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 1010 (1436)
... .. .++.+||++|+.. +.+.+|+.|++.+...... .....+....++++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 322 11 2346999999973 5677899999876432111 1122234556789999999964 44544
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1011 vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+..|+
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 4679999999999999999999999999999999999999999999998765 899999999975 34455666
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=308.64 Aligned_cols=205 Identities=32% Similarity=0.404 Sum_probs=171.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-----CccceEEEEcCCC--
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----EPQRVAAYISQHD-- 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-- 248 (1436)
+...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+.. ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 3467999999999999999999999999999999999999997 99999999872111 1134667777775
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+.|.+||+++|.......+... ..+.+..++++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 78999999999988765443211 11223457889999999842
Q ss_pred ccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
..++++.+|||||||||+||||++ +++|||||.||++++.++++.|+++.+.. +.+.+.++|+..-+...||+|
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 456789999999999999988774 99999999999999999999999988765 456666999999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|+||+.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=296.21 Aligned_cols=200 Identities=22% Similarity=0.264 Sum_probs=159.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~-~~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|... . .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899987653 2469999999999999999999999999999999999632 1 13579999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 1013 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1013 (1436)
.+... ..+++.+||++|+..+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 86532 1345679999999888874 99999987643221 1122233455778888888853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+..|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999865 689999999975 46677787
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=332.03 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=160.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
.++|+|+|++++|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 46999999999999999999999999999999999999998 9999999999877654 4789999999988876
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
|++|||.++.. . +.+...++....+ .++.++. |++..||.+|+. .
T Consensus 430 Ti~~NI~~~~~---~-----------------------~d~~i~~a~~~~g------l~~~i~~--lp~Gldt~i~e~-g 474 (592)
T PRK10790 430 TFLANVTLGRD---I-----------------------SEEQVWQALETVQ------LAELARS--LPDGLYTPLGEQ-G 474 (592)
T ss_pred hHHHHHHhCCC---C-----------------------CHHHHHHHHHHcC------cHHHHHh--ccccccccccCC-C
Confidence 99999988521 0 0000111110000 1112222 556678999874 4
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
..||||||||++||||+ +++|||||++||+.+...+.+.|++... ++|+|+..|++ +....+|+|++|++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 57999999999999877 4999999999999999999999998643 56666654443 556679999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
+++..|+++++.+
T Consensus 551 ~i~~~G~~~~L~~ 563 (592)
T PRK10790 551 QAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=293.65 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=154.5
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEEcCeeccc-----ccccceEEEeccCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSITISGYLKKQ-----ETFTRISGYCEQNDI 962 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 962 (1436)
++.+|+|+|+.++|||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+... ..+++.++|++|+..
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 45799999999999999999999999999999999997642 1 258999999986532 234567999999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
++ .+|++||+.+....+. . ..+..+.++++++.++|.+..+...+. ..+.||||||||++|||+|+.+|++|+|
T Consensus 100 ~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~~LS~G~~qrv~laral~~~p~llll 173 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SGLSLSGGQQQRLCIARAIATEPEVLLL 173 (261)
T ss_pred cc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 77 5999999988754432 1 122345688899999986533222222 2468999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++-+..|+
T Consensus 174 DEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 174 DEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999854 799999999976 46677787
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=292.60 Aligned_cols=195 Identities=27% Similarity=0.369 Sum_probs=158.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCCCH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 256 (1436)
+|+|||+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 8999999999999999999999999999999999874 3 8999999998765432 2458999999888889999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.+..... . ... +....++.+++.+||++..++ .++.
T Consensus 87 ~~nl~~~~~~~-~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T----------RTE------------------------AVASALNEVAEALGLDDKLGR-----SVNQ 126 (248)
T ss_pred HHHHHhcCccC-C----------CcH------------------------HHHHHHHHHHHHcCCHhHhcC-----Cccc
Confidence 99998752110 0 000 011235678899999866554 4557
Q ss_pred CCHHHHHHHhhhhh------------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 337 ISGGQKRRVTTGPA------------LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 337 LSGGqrkRvsia~a------------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
|||||||||+||++ .+++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999433 57999999999999999999999998764 3 4556667888889999999999
Q ss_pred EecCCeEEEecChHHH
Q 038815 405 LLSDGLIVYLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~ 420 (1436)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999988765
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=280.36 Aligned_cols=152 Identities=33% Similarity=0.419 Sum_probs=134.2
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-----ccccceEEEeccCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-----ETFTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~ 966 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++..++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999765 357999999976532 2356789999999888888
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999998542 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||..++..+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 170 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADR 170 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999887 899999999974 34445665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=327.90 Aligned_cols=202 Identities=26% Similarity=0.334 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceEEEEcCCC--C
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVAAYISQHD--N 249 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 249 (1436)
+.+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 56999999999999999999999999999999999999887 999999999875432 135699999996 5
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-cccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~ 328 (1436)
+++.+||.|++.+.....+... + .+....++++|+.+||+ ...+
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~L~~~gL~~~~~~-- 458 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLP---------G------------------------KAAAARVAWLLERVGLLPEHAW-- 458 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCC---------H------------------------HHHHHHHHHHHHHcCCCHHHhh--
Confidence 8899999999987654321100 0 01122356789999996 3444
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
..+..|||||||||+||+++ +|+|||||+|||..++.++.+.|+++.+.. +.+||.++|+..++.+++|+|
T Consensus 459 ---~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 459 ---RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF-GIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 44567999999999998877 499999999999999999999999987643 455666889999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=294.67 Aligned_cols=214 Identities=22% Similarity=0.270 Sum_probs=163.3
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..++++.++|+|+|+++++||+++|+|+||||||||||+|+|.++++. ..+|+|.++|.++... ..++.++
T Consensus 12 ~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 91 (259)
T PRK14260 12 DLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91 (259)
T ss_pred EEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheE
Confidence 34444445679999999999999999999999999999999999987531 1389999999887431 1235699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ +||+||+.++....+... + .+....++.+++.+|+.
T Consensus 92 ~v~q~~~l~~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~ 137 (259)
T PRK14260 92 MVFQRPNPFP-MSIYENVAYGVRISAKLP---------Q------------------------ADLDEIVESALKGAALW 137 (259)
T ss_pred EEecccccCC-ccHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHcCCc
Confidence 9999998887 899999988643221000 0 00112345567777774
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..... .-+..++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.. + .+|+.++|+.+++.
T Consensus 138 ~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~ 213 (259)
T PRK14260 138 QEVKD-KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQAT 213 (259)
T ss_pred chhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHH
Confidence 21110 11345668999999999998776 4999999999999999999999998743 3 45666788899999
Q ss_pred hhcCeEEEec-----CCeEEEecChHHHH
Q 038815 398 DLFDDIILLS-----DGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~-----~G~iv~~G~~~~~~ 421 (1436)
+++|++++|+ +|+++++|+++++.
T Consensus 214 ~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 214 RVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred HhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999998 59999999998763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=291.60 Aligned_cols=196 Identities=27% Similarity=0.389 Sum_probs=155.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.. .++.+|+|+|+.+++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 566777665421 12469999999999999999999999999999999999865 35799999997653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCC
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG------LPGVS 1017 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 1017 (1436)
. ...++.++|++|+...++ .||.|++.+... . .. .+.++++++.+++.+..+.... ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~-~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----L-AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----C-CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 224567999999988776 699999976421 1 11 2235678888888776665431 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.+...+++.|++++++ +|||+++|++.. + +..|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~ 207 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDR 207 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCE
Confidence 89999999999999999999999999999999999999999999998764 899999999863 3 67776
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=291.47 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=164.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---CCcccEEEEcCccCCCCC---ccceEEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS---LKVSGRVTYNGHNMDEFE---PQRVAAY 243 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~---~~~~G~I~~~G~~~~~~~---~~~~~~y 243 (1436)
++.++.+++.+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +.+.|+|.++|+++.... .++.++|
T Consensus 15 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~ 94 (257)
T PRK14246 15 RLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94 (257)
T ss_pred eEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEE
Confidence 4445556678999999999999999999999999999999999999876 122356666666654332 2467899
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++.+||+||+.++....+... + .+....++++++.+|+.+
T Consensus 95 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~~~~~~l~~ 141 (257)
T PRK14246 95 VFQQPNPFPHLSIYDNIAYPLKSHGIKE---------K------------------------REIKKIVEECLRKVGLWK 141 (257)
T ss_pred EccCCccCCCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCc
Confidence 9999999999999999998643211100 0 011123566788889863
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
...... +..++.||||||||++||+++ +++|||||+|||..+...+.+.|+++.+ + ++|+.++|...++.+
T Consensus 142 ~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiilvsh~~~~~~~ 217 (257)
T PRK14246 142 EVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--E-IAIVIVSHNPQQVAR 217 (257)
T ss_pred cchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-cEEEEEECCHHHHHH
Confidence 211111 234567999999999998766 5999999999999999999999998743 3 455667788888889
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
++|++++|++|+++.+|+.+++.
T Consensus 218 ~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 218 VADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=284.64 Aligned_cols=187 Identities=25% Similarity=0.311 Sum_probs=148.4
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-------ccceEEEEcCC
Q 038815 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-------PQRVAAYISQH 247 (1436)
Q Consensus 175 ~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~ 247 (1436)
++++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 84 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQN 84 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecc
Confidence 34457999999999999999999999999999999999999887 999999999854221 23579999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++.+||+||+.+.....+.. + .+....++.+++.+||++..+.
T Consensus 85 ~~~~~~~t~~e~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 130 (206)
T TIGR03608 85 FALIENETVEENLDLGLKYKKLS----------K------------------------KEKREKKKEALEKVGLNLKLKQ 130 (206)
T ss_pred hhhccCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCchhhhcC
Confidence 98999999999999864322110 0 0012235678899999776655
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. ++.||||||||++||+++ +++|||||+|||+.+...+.+.|+++.. .+.|+|+ ++|.... .+.+|+
T Consensus 131 ~-----~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~-~sh~~~~-~~~~d~ 202 (206)
T TIGR03608 131 K-----IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIII-VTHDPEV-AKQADR 202 (206)
T ss_pred C-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHH-HhhcCE
Confidence 4 457999999999998766 5999999999999999999999998764 3455555 5666654 468999
Q ss_pred EEEe
Q 038815 403 IILL 406 (1436)
Q Consensus 403 vilL 406 (1436)
+++|
T Consensus 203 i~~l 206 (206)
T TIGR03608 203 VIEL 206 (206)
T ss_pred EEeC
Confidence 9875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=323.03 Aligned_cols=195 Identities=21% Similarity=0.287 Sum_probs=164.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.+++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477888887653 2469999999999999999999999999999999999865 3579999999765
Q ss_pred ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 946 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 946 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
... . .++.+||++|++.+++.+||+|++.+... . ..+..+.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 321 1 23469999999999999999999987531 1 1233456889999999988777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|.|||+++|++. ++.+..|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999888999999999975 35667787
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=296.58 Aligned_cols=181 Identities=25% Similarity=0.368 Sum_probs=140.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.+||++|+..+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 459999999999999999999999999999999999865 357999999976532 234567999999987765 69
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 038815 969 VYESLLYSAWLRLPPEVDSETRK-----MFIEEIMELV--ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~ 1041 (1436)
|+||+.+... ........ ...+++++.+ ++....+.. +..|||||||||+||++|+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976421 11111100 0112333333 333322222 46899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1042 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1042 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+|||+.+...+.+.|+++++ |+|||+++|++.. + +..|+
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~ 205 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADR 205 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCE
Confidence 9999999999999999999999864 8999999999864 3 45776
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=291.26 Aligned_cols=160 Identities=26% Similarity=0.299 Sum_probs=128.2
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
|+-=.|.|..||+++++||||-||||+.++|||..++ .+|. . ..-.++|-||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----E-------EDLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----C-------ccceEeecceeecCCCCCcHHHHHH
Confidence 4444678899999999999999999999999997653 3444 1 1124678888765556789999885
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
-...-+... .-+..++.+-|.|+++.+..+ .+|||||.|||+||.+|..+.++.+||||++.||+..+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 432221111 123468888999999988874 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1055 AIVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1055 ~~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
..+-++||+.+. ++.|.+++-||-.
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccee
Confidence 999999999886 4889999999853
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=294.87 Aligned_cols=208 Identities=25% Similarity=0.293 Sum_probs=162.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+.... ..+. ..++.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 56778877653100 0000 013579999999999999999999999999999999999765 45899999998653
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038815 947 Q------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1017 (1436)
. ...++.++|++|+. .+.+..|++|++.+..... ...+..+....++++++.+|+. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 3567789999987643211 1123344455789999999996 455554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|++++++ |.|||+++|++. ++-+..|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998765 899999999975 45556677
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=338.80 Aligned_cols=195 Identities=30% Similarity=0.381 Sum_probs=164.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|++|.++. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 36899999998742 12469999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
.++ ..+++.+|||+|++.+++ -|++||+.++. | .+. +.++++++..++.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 467889999999999886 59999998742 2 222 336677888877653 36777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+.
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~I 654 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRI 654 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEE
Confidence 4 689999999999999999999999999999999999999999999886 689999999984 46778883
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=291.86 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=160.7
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
++..+++.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++
T Consensus 10 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 89 (252)
T PRK14255 10 DVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVG 89 (252)
T ss_pred eEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEE
Confidence 34444455679999999999999999999999999999999999865 3212389999999887421 1235799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
|++|++.+++ .||+||+.+.....+.... + .........++.+|+.
T Consensus 90 ~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~----------~-----------------------~~~~~~~~~l~~~~l~ 135 (252)
T PRK14255 90 MVFQQPNPFP-FSIYENVIYGLRLAGVKDK----------A-----------------------VLDEAVETSLKQAAIW 135 (252)
T ss_pred EEECCCccCC-CcHHHHHHHHHHHcCCCCH----------H-----------------------HHHHHHHHHHHHcCCc
Confidence 9999988887 7999999886443221000 0 0011123455666653
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
...... -+..+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.
T Consensus 136 ~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~ 211 (252)
T PRK14255 136 DEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQAS 211 (252)
T ss_pred cchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHH
Confidence 211111 1234568999999999998766 5999999999999999999999998753 3 45556788888999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.+|+|++|++|+++..|+..+..
T Consensus 212 ~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 212 RISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999887753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=292.65 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=151.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 56999999999999999999999999999999999999987 9999999987654322 45699999998766 47
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc--CCcccccccccCc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL--GLDICADTLVGDE 332 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 332 (1436)
||+||+.+... .. .. .++. ... .....+.+++.+ |++... +.
T Consensus 91 tv~~nl~~~~~--~~--~~---~~~~------------------~~~------~~~~~~~~l~~l~~~~~~~~-----~~ 134 (237)
T cd03252 91 SIRDNIALADP--GM--SM---ERVI------------------EAA------KLAGAHDFISELPEGYDTIV-----GE 134 (237)
T ss_pred hHHHHhhccCC--CC--CH---HHHH------------------HHH------HHcCcHHHHHhCcccccchh-----hc
Confidence 99999987431 00 00 0000 000 000112334444 443322 23
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++. .+.| |+.++|+.+++ +.+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~t-iii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT-VIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHH-HhCCEEEEEE
Confidence 4668999999999998776 499999999999999999999999874 2445 55566777777 4699999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=291.91 Aligned_cols=198 Identities=24% Similarity=0.312 Sum_probs=156.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.++ ++.+|+|||+.++|||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 477888877653 2469999999999999999999999999999999999621124579999999865
Q ss_pred cc---ccccc-eEEEeccCCCCCCCCCHHHHHHHhhhhcCC----CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 946 KQ---ETFTR-ISGYCEQNDIHSPLVTVYESLLYSAWLRLP----PEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~---~~~~~-~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
.. ...++ .++|++|++.+++.+|+.|++.+....... ......+..+.++++++.+++. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 32 12223 478999999999999999998775432110 1112223345678899999997 34554421
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
.+|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++++++|+|||+++|++..
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2599999999999999999999999999999999999999999999998779999999999754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=332.84 Aligned_cols=196 Identities=21% Similarity=0.313 Sum_probs=165.1
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|++|.++. ++.+|+|+|++++|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46899999998741 23599999999999999999999999999999999998763 57999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
.++ ..+++.++||+|++.+++. |++||+.++. +.++ +.++++++.+|+.+. .|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4678899999999999885 9999998752 1222 346778888887653 35667664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
| .+||||||||++|||+|+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|+++|+| +....+|+.
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~i 544 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTI 544 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEE
Confidence 3 57999999999999999999999999999999999999999999998854 79999999998 456678884
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=333.01 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=165.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|++|.++. +++.+|+|+|+.|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 36999999998742 12469999999999999999999999999999999999876 357999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
.++ ..+++.++||+|++.+++ -|++||+.++. +...++ +.++++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 653 456788999999999886 69999997641 222233 33566777777554 247778765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
| .+||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+.
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~I 548 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEI 548 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 4 5799999999999999999999999999999999999999999999874 4799999999984 57788884
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=331.77 Aligned_cols=204 Identities=24% Similarity=0.379 Sum_probs=160.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 56999999999999999999999999999999999999998 9999999999877654 467999999998776 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
|++|||.++... +.+.++..++.... -.+..++. |++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~------~l~~~i~~--lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMA------YAMDFINK--MDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHh------CcHHHHHh--cccccCceeCCC-C
Confidence 999999875210 00111111111100 01122222 567789999975 4
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
+.||||||||++|||++ +++|||||++||+.++..+.+.|++.. .++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 67999999999999877 499999999999999999999998863 2456665 44544 567789999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988753
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=337.60 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=159.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~- 566 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE- 566 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-
Confidence 357999999999999999999999999999999999999998 9999999999877654 578999999997775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.|++|||.++.. +.+.+...++....+ .+..++ .++...||.+|+.
T Consensus 567 gTi~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i~e~- 612 (710)
T TIGR03796 567 GTVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVIT--SRPGGYDAELAEG- 612 (710)
T ss_pred ccHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHHH--hCcCcccceeccC-
Confidence 699999987421 011111111111000 111222 2566778999965
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
..+||||||||++|||++ +++||||||+||+.+..++.+.|++ .++|+|+ ++|.. +....+|+|++|++
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLER 686 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeC
Confidence 568999999999999877 4999999999999999999999985 3566666 45544 45567999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+++++.+
T Consensus 687 G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 687 GKVVQRGTHEELWA 700 (710)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=281.78 Aligned_cols=165 Identities=41% Similarity=0.710 Sum_probs=141.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++..++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 57999999999999999999999999999999999999 876 9999999998765334567999999998899999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
++||+.+..+ + .
T Consensus 99 ~~~~i~~~~~-------------------------------------------------------~-------------~ 110 (194)
T cd03213 99 VRETLMFAAK-------------------------------------------------------L-------------R 110 (194)
T ss_pred HHHHHHHHHH-------------------------------------------------------h-------------c
Confidence 9999976310 0 0
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hhHHhhcCeEEEecCC
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA-PETYDLFDDIILLSDG 409 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~-~~~~~lfD~vilL~~G 409 (1436)
.|||||||||+||+++ +++|||||+|||..++..+.+.|+++.+ .+.|+|+ ++|.. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 5999999999998776 5999999999999999999999998754 3555555 45554 4788899999999999
Q ss_pred eEEEec
Q 038815 410 LIVYLG 415 (1436)
Q Consensus 410 ~iv~~G 415 (1436)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=281.60 Aligned_cols=177 Identities=20% Similarity=0.311 Sum_probs=137.9
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
|..+-.+||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|..++ ..|+..-|-
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKnh- 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKNH- 648 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhccc-
Confidence 44567778877654 356789999999999999999999999999999999998763 356554332
Q ss_pred ecccccccceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038815 944 LKKQETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST 1021 (1436)
Q Consensus 944 ~~~~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg 1021 (1436)
+-.+|+..|+. .+....|.-|.|.-. +.+ +.++ ....|-.+||...++|+- +..|||
T Consensus 649 -------rL~iG~FdQh~~E~L~~Eetp~EyLqr~--FNl----pyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 649 -------RLRIGWFDQHANEALNGEETPVEYLQRK--FNL----PYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred -------eeeeechhhhhHHhhccccCHHHHHHHh--cCC----ChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 23578877763 344555777766421 122 2222 345788899999888873 568999
Q ss_pred HHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1022 GqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
|||-||++|.--+..|+||+|||||++||..+...+-++|+.. ...||+++|+.+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 9999999999999999999999999999999999999999876 568999999854
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=263.01 Aligned_cols=193 Identities=25% Similarity=0.402 Sum_probs=162.4
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNH 250 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~ 250 (1436)
......||+++|+.+.+||..+|.||||||||||||+++.+.+|+ +|++++.|++++...+ ++.++||.|.+.+
T Consensus 12 ~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 345667999999999999999999999999999999999999998 9999999999987765 5789999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
|++ ||.+||.|.-+.+.- ++|.+ .....|+.++|++..-
T Consensus 89 fg~-tVeDNlifP~~~r~r-------------------r~dr~-----------------aa~~llar~~l~~~~L---- 127 (223)
T COG4619 89 FGD-TVEDNLIFPWQIRNR-------------------RPDRA-----------------AALDLLARFALPDSIL---- 127 (223)
T ss_pred ccc-chhhccccchHHhcc-------------------CCChH-----------------HHHHHHHHcCCchhhh----
Confidence 996 999999997655421 12211 1234678888886432
Q ss_pred CcccCCCCHHHHHHHhhhh-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGP-----ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++.+..||||||||++|.| |.||+||||||+||.++...|-+.+..+... ....++-++|+..+..+.||+++-
T Consensus 128 ~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~it 206 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVIT 206 (223)
T ss_pred cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhh-hceEEEEEecChHHHhhhhheEEE
Confidence 3456679999999999966 4579999999999999999999999988764 467778899999999999999999
Q ss_pred ecCCeE
Q 038815 406 LSDGLI 411 (1436)
Q Consensus 406 L~~G~i 411 (1436)
+..|++
T Consensus 207 l~~G~~ 212 (223)
T COG4619 207 LQPGHA 212 (223)
T ss_pred eccCcc
Confidence 999975
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=294.03 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=158.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~-~~~G~i~i~g 942 (1436)
.+.++|+++.+. ++.+|+|+|+.|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 477888887653 24699999999999999999999999999999999996431 1 2579999999
Q ss_pred eecc-----cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038815 943 YLKK-----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 943 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.+.. ...+++.+||++|+..+++ .||+||+.+....+. .. ....+.++++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 7652 1234567999999988777 499999987654321 11 12334567778888875321111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999876 589999999975 56777787
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=291.57 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=159.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC--Ce--eEEEEEEc
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGSITIS 941 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~--~~--~~G~i~i~ 941 (1436)
.+.++++++.+. ++.+|+|+|+.+.+||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 367788876542 35699999999999999999999999999999999997542 21 23666666
Q ss_pred Ceecc---cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 038815 942 GYLKK---QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP----LRQSLVGLP 1014 (1436)
Q Consensus 942 g~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 1014 (1436)
|.+.. ...+++.++|++|++.+++.+||+||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 65432 12346779999999999999999999988643321 1123344456889999999964 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||+|||||++||++|+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+-+..|+
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~ 221 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADY 221 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCE
Confidence 467999999999999999999999999999999999999999999999865 699999999975 56667787
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=289.37 Aligned_cols=190 Identities=29% Similarity=0.421 Sum_probs=146.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 46999999999999999999999999999999999999887 9999999987654322 356899999987776 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc-----
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV----- 329 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v----- 329 (1436)
||.||+.+..... .. ...+.+++.+||++..+..+
T Consensus 93 tv~e~l~~~~~~~------------~~----------------------------~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA------------DD----------------------------ERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC------------CH----------------------------HHHHHHHHHcCcHHHHHhccccccc
Confidence 9999997742100 00 01123445555554333221
Q ss_pred -cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 330 -GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 330 -g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
-.+.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.... +++|++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--D-KTLIIITHRPSLL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHH-HhCCEE
Confidence 1123568999999999998766 5999999999999999999999998753 3 4455566666665 799999
Q ss_pred EEecCCeEEEec
Q 038815 404 ILLSDGLIVYLG 415 (1436)
Q Consensus 404 ilL~~G~iv~~G 415 (1436)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=294.23 Aligned_cols=214 Identities=18% Similarity=0.312 Sum_probs=159.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEEcCccCCCC-----CccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----EPQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~ 241 (1436)
+++..++++..+|+|+|++|++||+++|+|+|||||||||++|+|.++ |....+|+|.++|+++... ..++.+
T Consensus 28 ~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 107 (271)
T PRK14238 28 QNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNV 107 (271)
T ss_pred eeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhE
Confidence 344444445679999999999999999999999999999999999986 2112399999999887421 124579
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++ .||+||+.++.+..+... + . .....+...++.+++
T Consensus 108 ~~v~q~~~~~~-~tv~eni~~~~~~~~~~~------~---~------------------------~~~~~~~~~l~~~~~ 153 (271)
T PRK14238 108 GMVFQKPNPFP-KSIYDNVTYGPKIHGIKD------K---K------------------------TLDEIVEKSLRGAAI 153 (271)
T ss_pred EEEecCCcccc-ccHHHHHHHHHHhcCCCc------H---H------------------------HHHHHHHHHHHHcCC
Confidence 99999988777 599999998643221100 0 0 001122344555543
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
........ +..++.|||||||||+||+++ +++|||||+|||+.+..++.+.|+++.. + ++++.++|+.+++
T Consensus 154 ~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~i 229 (271)
T PRK14238 154 WDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--D-YSIIIVTHNMQQA 229 (271)
T ss_pred cchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--C-CEEEEEEcCHHHH
Confidence 21111111 345668999999999998766 5999999999999999999999998753 4 4566678888899
Q ss_pred HhhcCeEEEecCCeEEEecChHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+++|++++|++|++++.|+.+++
T Consensus 230 ~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 230 ARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999998776
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=304.50 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=158.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|+|+++++||.++|+|++|||||||++.|+|-++|+ +|+|+.||.++.+... ++.++.++|.. |+..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRV-HLFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccch-HHHH
Confidence 346999999999999999999999999999999999999998 9999999999877655 46789999986 5555
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC-------ccccc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL-------DICAD 326 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~ 326 (1436)
-|+|+||..+. |+...++ ..++++..|| ++..|
T Consensus 426 ~Tlr~NL~lA~-------------------------~~AsDEe---------------l~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLAN-------------------------PDASDEE---------------LWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcC-------------------------CCCCHHH---------------HHHHHHHcCHHHHHHhChhhhh
Confidence 69999998853 1111111 1223344444 34567
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
|.+|+ ..++||||||||++|||++ +++|||||.|||+.|..++++.+.+.+ .++|+++ ++|+... .+.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcC
Confidence 88886 5678999999999999877 499999999999999999999998744 3566665 5565554 45789
Q ss_pred eEEEecCCeEEEecChHHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~ 422 (1436)
+|++|++|+++++|.++++.+
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999998864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=285.91 Aligned_cols=192 Identities=27% Similarity=0.295 Sum_probs=152.5
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNH 250 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~ 250 (1436)
+..++.++++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|++... ..+...+
T Consensus 28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~---------~~~~~~~ 95 (224)
T cd03220 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL---------LGLGGGF 95 (224)
T ss_pred hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh---------hcccccC
Confidence 345666778999999999999999999999999999999999999887 9999999986431 1122345
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
.+.+||+||+.+.....+.. . .+.....+.+++.+||++..++.+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 140 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLS----------R------------------------KEIDEKIDEIIEFSELGDFIDLPV- 140 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 57899999998764322110 0 001123456788899987766554
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
..|||||||||+||+++ +++|||||+|||+.++..+.+.|++.+. . +++|+.++|+.+++.+++|++++
T Consensus 141 ----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~ 214 (224)
T cd03220 141 ----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-Q-GKTVILVSHDPSSIKRLCDRALV 214 (224)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 46999999999998766 5999999999999999999999998765 3 44566678888899999999999
Q ss_pred ecCCeEEEec
Q 038815 406 LSDGLIVYLG 415 (1436)
Q Consensus 406 L~~G~iv~~G 415 (1436)
|++|++++.|
T Consensus 215 l~~G~i~~~g 224 (224)
T cd03220 215 LEKGKIRFDG 224 (224)
T ss_pred EECCEEEecC
Confidence 9999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=278.79 Aligned_cols=152 Identities=24% Similarity=0.399 Sum_probs=133.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCC---CCCCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQND---IHSPL 966 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~ 966 (1436)
+|+++|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999865 357999999976542 12456799999984 57788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
+|++|++.+... ||||||||++||++|+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+++.|+++.++|+|||+++|+++ ++.+..|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 173 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDR 173 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999777899999999974 56566665
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=295.47 Aligned_cols=212 Identities=22% Similarity=0.283 Sum_probs=162.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEEcCccCCCC-----CccceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----EPQRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~ 241 (1436)
+++..+++++.+|+|+|+.|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.+
T Consensus 43 ~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i 122 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRI 122 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccE
Confidence 344444455679999999999999999999999999999999999986310 1389999999886432 124679
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++. ||.||+.+.....+.. . +....++.+++.+||
T Consensus 123 ~~v~q~~~l~~~-tv~enl~~~~~~~~~~----------~-------------------------~~~~~~~~~l~~~~l 166 (285)
T PRK14254 123 GMVFQKPNPFPK-SIYDNVAYGLKIQGYD----------G-------------------------DIDERVEESLRRAAL 166 (285)
T ss_pred EEEecCCccCcC-CHHHHHHHHHHHcCCc----------H-------------------------HHHHHHHHHHHHcCC
Confidence 999999887875 9999998865432110 0 011224567888888
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
.+..... -+..+..|||||||||+||+++ +|+|||||+|||+.+...+.+.|+++++ +. +|+.++|+..++
T Consensus 167 ~~~i~~~-~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~-tiii~tH~~~~i 242 (285)
T PRK14254 167 WDEVKDQ-LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EY-TVVIVTHNMQQA 242 (285)
T ss_pred CchhHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CC-EEEEEeCCHHHH
Confidence 5311001 1244568999999999998776 4999999999999999999999999864 34 566678888899
Q ss_pred HhhcCeEE-EecCCeEEEecChHHH
Q 038815 397 YDLFDDII-LLSDGLIVYLGPRELV 420 (1436)
Q Consensus 397 ~~lfD~vi-lL~~G~iv~~G~~~~~ 420 (1436)
.+++|+++ +|++|++++.|+.+++
T Consensus 243 ~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 243 ARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 99999975 6799999999988765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=294.40 Aligned_cols=203 Identities=23% Similarity=0.256 Sum_probs=158.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEEcC
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSITISG 942 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~--~-~~~~G~i~i~g 942 (1436)
.+.++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588899987653 2358999999999999999999999999999999999753 1 13589999999
Q ss_pred eeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 038815 943 YLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 1016 (1436)
Q Consensus 943 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1016 (1436)
.+... ..+++.+||++|+..+++ .||+||+.+....+. ..+.+...+.+.++++.+++.. +.+. ... .+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~-~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDR-LHD-NA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHH-Hhc-Cc
Confidence 86531 234667999999988877 499999988654321 1122223445677777776532 2111 111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++-+..|+
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 68999999999999999999999999999999999999999999999866 799999999975 45566777
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=291.54 Aligned_cols=200 Identities=26% Similarity=0.263 Sum_probs=157.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee-
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL- 944 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~- 944 (1436)
.+.++|+++.++ .+.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 367778876543 2468999999999999999999999999999999999865 357999999865
Q ss_pred ----ccc---c----cccceEEEeccCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 038815 945 ----KKQ---E----TFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSL 1010 (1436)
Q Consensus 945 ----~~~---~----~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 1010 (1436)
... . ..++.++|++|++. ..+.+|+.|++.+..... .. ....+..+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12346899999974 445679999986542211 11 111233466789999999963 55554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1011 vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+..|+
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 4679999999999999999999999999999999999999999999998764 899999999975 45566677
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=292.20 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=150.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999999887 9999999987654322 356999999987765 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc--CCcccccccccCc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL--GLDICADTLVGDE 332 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 332 (1436)
||+||+.+...... ..+.. ... .......+++.+ |++...+ .
T Consensus 92 tv~e~l~~~~~~~~-------~~~~~------------------~~~------~~~~~~~~~~~l~~~~~~~~~-----~ 135 (238)
T cd03249 92 TIAENIRYGKPDAT-------DEEVE------------------EAA------KKANIHDFIMSLPDGYDTLVG-----E 135 (238)
T ss_pred hHHHHhhccCCCCC-------HHHHH------------------HHH------HHcChHHHHHhhccccceeec-----c
Confidence 99999987532110 00000 000 000012223333 3433222 3
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.++.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++. .+.+ |+.++|+.+++. .+|+|++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~-vi~~sh~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRT-TIVIAHRLSTIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHHh-hCCEEEEEE
Confidence 4568999999999998766 599999999999999999999999874 3444 555667777775 899999999
Q ss_pred CCeEEEecChHHHHH
Q 038815 408 DGLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~ 422 (1436)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=326.71 Aligned_cols=196 Identities=28% Similarity=0.445 Sum_probs=158.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 46999999999999999999999999999999999999998 9999999999877654 467999999987776 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC------ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL------DICADTL 328 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t~ 328 (1436)
|++|||.++.. +.+.+. ++..++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~-------------------------~~~~~~---------------i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAP-------------------------NASDEA---------------LIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCC-------------------------ccCHHH---------------HHHHHHHcCCHHHHcCccccCch
Confidence 99999988531 000011 1222333333 4567899
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+|+. .+.||||||||++|||++ +++|||||++||+.++..+.+.|++.. .++|+|++.|+ .+. ...+|+|
T Consensus 469 vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr-~~~-~~~~d~i 543 (574)
T PRK11160 469 LGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHR-LTG-LEQFDRI 543 (574)
T ss_pred hcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecC-hhH-HHhCCEE
Confidence 9975 567999999999999877 499999999999999999999999864 35666665444 444 4569999
Q ss_pred EEecCCeEEEecChHHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~ 422 (1436)
++|++|++++.|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998763
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=290.32 Aligned_cols=204 Identities=26% Similarity=0.288 Sum_probs=155.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.++ ++.+|+|+|+.|++|+++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 45677776543 24699999999999999999999999999999999997421145799999997653
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHhh-hhcC--CC-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038815 947 QE---T-FTRISGYCEQNDIHSPLVTVYESLLYSA-WLRL--PP-EVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVS 1017 (1436)
Q Consensus 947 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a-~lr~--~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1017 (1436)
.. . .++.++|++|+..+++.+|+.+++.+.. .++. .. ........++++++++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 2346999999988888888777654321 1111 00 011223345678899999995 4444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHH-hhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFES-FDE 1088 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~-FD~ 1088 (1436)
.|||||||||+||++|+.+|+||+|||||+|||..+...+.+.|+++++.|+|||+++|++.. +-.. .|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~ 215 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDY 215 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCE
Confidence 699999999999999999999999999999999999999999999998778999999999763 3232 465
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=293.75 Aligned_cols=180 Identities=27% Similarity=0.338 Sum_probs=143.2
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 58999999999999999999999999999999999865 357999999976432 234567999999988776 699
Q ss_pred HHHHHHhhhhcCCCCCCHHHH-----HHHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 970 YESLLYSAWLRLPPEVDSETR-----KMFIEEIMELV--ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~-----~~~v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
+||+.+.... ...... ...+++.++.+ ++.+..+.. +..||||||||++||++|+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999775321 111111 11234455554 454444433 467999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+|||+.+...+.+.|+++.+ |.|||+++|++.. + +..|+
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 205 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-I-ENADR 205 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-H-hhCCE
Confidence 999999999999999999999864 8999999999853 4 34777
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=292.89 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=158.6
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEc
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSITIS 941 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~---~~~G~i~i~ 941 (1436)
..+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3688899987653 246999999999999999999999999999999999975321 247999999
Q ss_pred Ceeccc-----ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038815 942 GYLKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016 (1436)
Q Consensus 942 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1016 (1436)
|.+... ..+++.++|++|+..+++. ||.|++.+....+. ... ...+.+++.++.+++.......... .+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~-~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKE-KG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcC-Cc
Confidence 976531 2345689999999887764 99999987643321 111 2234467788888874211111111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|+++ ++.+..|+
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 67999999999999999999999999999999999999999999999865 789999999975 46667777
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=331.47 Aligned_cols=196 Identities=31% Similarity=0.460 Sum_probs=162.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|++|.++. ++.+|+|+|++++|||.+||+||||||||||++.|.|..+ +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 45999999998752 3579999999999999999999999999999999999876 358999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE-------LNPLRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~ 1014 (1436)
.++ ..+++.++||+|+..++. -||+||+.++. | +.++++ ++++++..+ +.+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 654 567889999999999987 89999998862 1 223332 334444333 333568899844
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++||||++.+|+||+||||||+||+.+...|++.++++. +|+|+++++|+++. ....|+
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~ 532 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADR 532 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCE
Confidence 45899999999999999999999999999999999999999999999876 57899999999853 334787
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=292.67 Aligned_cols=195 Identities=25% Similarity=0.385 Sum_probs=151.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. +.+.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 366778876542 12359999999999999999999999999999999999865 3579999999765
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL-------VGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~ 1015 (1436)
.. ..+++.++|++|+..+++. ||+|++.+... ... ...+++.++.+++.+..+.+ .+. .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGE-N 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhc-C
Confidence 32 2345679999999887775 99999976421 111 12234455555554433322 111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. +|+|||+++|++.. + +..|+
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 46899999999999999999999999999999999999999999999985 48999999999854 3 45676
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=328.48 Aligned_cols=198 Identities=26% Similarity=0.394 Sum_probs=165.5
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999998742 12458999999999999999999999999999999999866 457999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL------RQSLVGLPG 1015 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~~~ 1015 (1436)
..+ ..+++.++||+|+..+++ -|++||+.++. | +.+ ++.++++++.+++.+. .||.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 456788999999998876 59999998752 1 222 3346788888888764 35667654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
...||||||||++|||+|+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++. ...+|+.
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i 543 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRI 543 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEE
Confidence 45799999999999999999999999999999999999999999999885 48999999999864 4568883
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=292.51 Aligned_cols=202 Identities=25% Similarity=0.324 Sum_probs=156.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++.. ++..+|+|+|+.|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 47788888776421 12359999999999999999999999999999999999865 3579999999764
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV--ELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ...++.++|++|+..+++ .||+||+.+..................+++.++.+ |+.+..+.. +..||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCC
Confidence 32 234567999999987776 59999997643211000000011112356778888 676655544 46799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++. + +..|+
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 217 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQ 217 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999865 6899999999864 4 34666
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=286.45 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=155.2
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQ 246 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q 246 (1436)
++....+++++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred ccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 3444444567999999999999999999999999999999999999887 9999999988754432 357899999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICA 325 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~ 325 (1436)
++.+++ .||+||+.+.....+. . . ....++.+++.+||. ...
T Consensus 89 ~~~l~~-~tv~enl~~~~~~~~~--~--------------------~--------------~~~~~~~~l~~~~l~~~~~ 131 (225)
T PRK10247 89 TPTLFG-DTVYDNLIFPWQIRNQ--Q--------------------P--------------DPAIFLDDLERFALPDTIL 131 (225)
T ss_pred cccccc-ccHHHHHHhHHhhcCC--C--------------------h--------------HHHHHHHHHHHcCCChHHh
Confidence 988776 5999999875332110 0 0 001245678899995 334
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++ .++.|||||||||+||+++ +++|||||+|||+.+...+.+.|+++.+..+.| |+.++|+.+++. .+
T Consensus 132 ~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sh~~~~~~-~~ 204 (225)
T PRK10247 132 TK-----NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA-VLWVTHDKDEIN-HA 204 (225)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECChHHHH-hC
Confidence 43 4567999999999998766 599999999999999999999999986543444 555667777774 69
Q ss_pred CeEEEec-CCeEEEecCh
Q 038815 401 DDIILLS-DGLIVYLGPR 417 (1436)
Q Consensus 401 D~vilL~-~G~iv~~G~~ 417 (1436)
|++++|+ ++..+.+|..
T Consensus 205 d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 205 DKVITLQPHAGEMQEARY 222 (225)
T ss_pred CEEEEEecccchHhhhhh
Confidence 9999995 5656666644
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=320.39 Aligned_cols=190 Identities=26% Similarity=0.307 Sum_probs=158.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCCCCCCC
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~ 966 (1436)
++.+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|+..+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 3579999999999999999999999999999999999865 357999999986532 1234679999999888889
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
+||+|++.+..........+.++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532111111123334457889999999987777653 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1047 SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1047 sgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|||+.+...+++.|+++++.|.|||+++|++. ++-+..|+
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~ 203 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE 203 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999888999999999974 45566777
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=290.57 Aligned_cols=184 Identities=26% Similarity=0.349 Sum_probs=153.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 367888877653 2469999999999999999999999999999999999865 35799999872
Q ss_pred ccccccceEEEeccCCCCCCC--CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPL--VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~--lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
..++|++|+..+++. .|+++++.+. + ... .+.+.++++.++|.+..+.. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877665 4778876432 1 111 23467899999998877765 35799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||++||++|+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|++. ++.+..|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~ 190 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDE 190 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999975 56666777
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=261.38 Aligned_cols=208 Identities=26% Similarity=0.313 Sum_probs=172.4
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC----------Cc--
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----------EP-- 237 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------~~-- 237 (1436)
.+.++++...+|++||+..+.|+.+.|+|.|||||||+|++|.=+..|+ .|.|.+||..+.-. +.
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 4567788889999999999999999999999999999999999998887 99999999875311 11
Q ss_pred ----cceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHH
Q 038815 238 ----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTD 313 (1436)
Q Consensus 238 ----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1436)
+...++|+|+.+++..|||.||+.-+..-- -..++ .++....+
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV---------Lg~~k------------------------~ea~e~Ae 134 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV---------LGVSK------------------------AEAIERAE 134 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh---------hcCCH------------------------HHHHHHHH
Confidence 124689999999999999999997542110 00111 12233467
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 038815 314 YYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS 388 (1436)
Q Consensus 314 ~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~ 388 (1436)
.+|...||.+..| .++..|||||+||++||||+ ++++|||||+|||.-.-++++.+++++.. ++|.++
T Consensus 135 ~~L~kVGi~ek~~-----~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~- 207 (256)
T COG4598 135 KYLAKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVV- 207 (256)
T ss_pred HHHHHhCchhhhh-----cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEE-
Confidence 7899999988776 45667999999999999987 49999999999999999999999999974 555555
Q ss_pred EecChhhHHhhcCeEEEecCCeEEEecChHHH
Q 038815 389 LLQPAPETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 389 ~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
++|....+-+...+|+.|++|.|-++||++++
T Consensus 208 VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 208 VTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred EeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 78889999999999999999999999999987
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=290.59 Aligned_cols=182 Identities=24% Similarity=0.336 Sum_probs=153.0
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+|+|||+.+++||+++|+|+||||||||+++|+|..+ .+|+|.++|.+... ...++.+||++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999986532 22345689999998888889999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCCcceec
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1043 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~-------~p~il~lD 1043 (1436)
||+.+.... ..+.++..+.++++++.++|.+..+.. ++.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112233345688999999998776665 35799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.+...+.+.|++++++|.|||+++|++. ++-+..|+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~ 202 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADR 202 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999877999999999975 46666777
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=288.62 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=161.4
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEEEcCccCCCCCc---cc-eEEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK--LDSSLKVSGRVTYNGHNMDEFEP---QR-VAAY 243 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~---~~-~~~y 243 (1436)
++..+++++.+|+|||+++++||+++|+|||||||||||++|+|. ++|+ +|+|.++|.++..... ++ .++|
T Consensus 12 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~ 88 (252)
T CHL00131 12 NLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFL 88 (252)
T ss_pred eEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEE
Confidence 334444445799999999999999999999999999999999997 4565 9999999998765432 12 3789
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++.+|+.|++.+........ ... ++.+ ..+....++.+++.+||.+
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~---------------~~~-~~~~-----------~~~~~~~~~~~l~~~~l~~ 141 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKF---------------QGL-PELD-----------PLEFLEIINEKLKLVGMDP 141 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcc---------------ccc-cccc-----------HHHHHHHHHHHHHHcCCch
Confidence 999999999999999998754311000 000 0000 0011123466789999963
Q ss_pred -cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 324 -CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 324 -~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..+..++ .+|||||||||+||+++ +++|||||+|||+.++..+.+.|++++. .+ ++||.++|+.+.+.
T Consensus 142 ~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~~tH~~~~~~ 215 (252)
T CHL00131 142 SFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SE-NSIILITHYQRLLD 215 (252)
T ss_pred hhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHH
Confidence 3443322 25999999999998776 5999999999999999999999998764 34 45555777777777
Q ss_pred hh-cCeEEEecCCeEEEecChHHH
Q 038815 398 DL-FDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 398 ~l-fD~vilL~~G~iv~~G~~~~~ 420 (1436)
.. +|++++|++|++++.|+++.+
T Consensus 216 ~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 216 YIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred hhhCCEEEEEeCCEEEEecChhhh
Confidence 76 899999999999999988743
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=293.14 Aligned_cols=214 Identities=23% Similarity=0.289 Sum_probs=162.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEEcCccCCCC-----Cccce
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----EPQRV 240 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~ 240 (1436)
++++..+++++++|+|+|+.|++||+++|+|||||||||||++|+|.+++. ...+|+|.++|+++... ..++.
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~ 102 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhc
Confidence 344455555567999999999999999999999999999999999997631 11389999999887421 12457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
++|++|++..++. ||.||+.++....+.. . + .+...+..++.+|
T Consensus 103 i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~----------~-----------~--------------~~~~~~~~l~~~~ 146 (274)
T PRK14265 103 VGMVFQRPNPFPK-SIYENIAFAPRANGYK----------G-----------N--------------LDELVEDSLRRAA 146 (274)
T ss_pred EEEEccCCccccc-cHHHHHHhHHHhcCch----------H-----------H--------------HHHHHHHHHHHcc
Confidence 9999999887774 9999998764322100 0 0 0011234566666
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+...... .-+..+..|||||||||+||+++ ++||||||+|||+.++..+.+.|+++.+ + ++|+.++|+.++
T Consensus 147 l~~~l~~-~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~ 222 (274)
T PRK14265 147 IWEEVKD-KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--Q-YTIIMVTHNMQQ 222 (274)
T ss_pred cchhhHH-HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHH
Confidence 5321111 11245668999999999998776 4999999999999999999999998742 3 556668888999
Q ss_pred HHhhcCeEEEec---------CCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLS---------DGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~---------~G~iv~~G~~~~~~ 421 (1436)
+.+++|++++|+ +|++++.|+++++.
T Consensus 223 ~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 223 ASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred HHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999997 89999999998874
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=326.82 Aligned_cols=196 Identities=29% Similarity=0.436 Sum_probs=163.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++. +++.+|+|+|+.++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 6899999998752 12468999999999999999999999999999999999876 4579999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1015 (1436)
.+ ..+++.+|||+|++.+++ .|++||+.++. + +.++ +.++++++..++.+. .|+.+|..+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 43 456788999999998886 69999998742 1 1222 345677777777653 366777643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++|||+|+++|++|+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....+|+
T Consensus 457 -~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 457 -AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 5799999999999999999999999999999999999999999999875 5899999999984 3466776
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1436 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-06 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-06 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-05 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-05 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-04 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1436 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-14 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-20 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-07 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-13 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-12 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-11 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 9e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 9e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 7e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 5e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY--LKKQETF 950
L G+S G + L+G +GAGKTT + +++ + + G +T+ G +++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 951 TRISGYC-EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
++ Y E+ + + E L + A + E +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNM-QGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKD 142
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1069
V S ++L IA L+ NP + +DEPTSGLD A V + +K + G
Sbjct: 143 RVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 1070 TVVCTIH 1076
T++ + H
Sbjct: 198 TILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 59/253 (23%), Positives = 90/253 (35%), Gaps = 58/253 (22%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
ILK +S I G + L+GP +GKTT L ++ + S SG VT G N+ E EP
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVE-EP 83
Query: 238 QRVAA---YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDI 294
V Y+ + M E L F A S E+++ A
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-----EIEEMVERA-------- 130
Query: 295 DVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-- 352
++ GL + + S G R++ AL
Sbjct: 131 ---------------------TEIAGL-----GEKIKDRVSTYSKGMVRKLLIARALMVN 164
Query: 353 ---LFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILLS 407
+DE ++GLD ++ ++Q + G ++ E L D I L+
Sbjct: 165 PRLAILDEPTSGLDVLNAREVRKILKQ----ASQEGLTILVSSHNMLEVEFLCDRIALIH 220
Query: 408 DGLIVYLG-PREL 419
+G IV G EL
Sbjct: 221 NGTIVETGTVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 5e-22
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSITISGYLKKQETFT 951
L ++ G + G +G GKTTL+ ++ Y+ G I +G +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGV-PITKVKG 78
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
+I + + I ++V + L A L + K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRT 1070
+ LS +R+ +A L+ N I +D+P +D + V++++ + E G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1071 VVCTIH 1076
++ +
Sbjct: 187 IISSRE 192
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 57/239 (23%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L+ ++ I G++ GP GKTTLL ++ L G + YNG + + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 77
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
++ + +++V + L A GV +NE
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV----------KVNKNEI------------ 115
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----L 353
L+ + + + +S G RRV L
Sbjct: 116 --------------MDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEIY 155
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
+D+ +D + +++ SI I G +IS + E D L
Sbjct: 156 VLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVNENLHKYSTK 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 5e-22
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR 952
L ++ G + A++G +G GK+TL+D+L G I G I + +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEVYQSI-------- 68
Query: 953 ISGYCEQNDIHSPLVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
G+ Q +V + +L + P D + + ++ + L L
Sbjct: 69 --GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLTHLA 122
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVE 1066
+ + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 123 KREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 1067 TGRTVVCTIHQP 1078
TVV T HQP
Sbjct: 178 QNMTVVFTTHQP 189
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 59/250 (23%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+ + ++ + G + +LG GK+TLL L G G++ E
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKI----------EVY 65
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
+ ++ Q + +V + + G + + + D V M
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----GRSTHINTFAKPKSH----------DYQVAM 110
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----L 353
+A L L L A +SGGQ++ + A+A +
Sbjct: 111 QA---------------LDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLI 150
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSDGLI 411
+DE ++ LD + +++ + N T V + + + +LL+
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNF 207
Query: 412 VYLGPRELVL 421
+ G +L
Sbjct: 208 KF-GETRNIL 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 35/224 (15%)
Query: 858 MVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLV------LLNGVSGAFRPGVLTALM 911
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 912 GVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969
G +G GKTTL+ +LAG + G + +S +K Q+ + G TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAPKFPG------------TV 430
Query: 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1029
+ F ++++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVV 1072
+ L I +DEP++ LD+ I + ++ + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-14
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 23/184 (12%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKK------QETFTRI- 953
RPG + L+G +G GK+T + +LAG + G +K Q FT++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 954 -----SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ 1008
+ Q + P L+L E ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 1009 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1068
+ LS + +R I + V + DEP+S LD + + +++ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1069 RTVV 1072
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 59/291 (20%), Positives = 94/291 (32%), Gaps = 68/291 (23%)
Query: 104 LRDRFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKG 163
+ G+ VR E +N+ + + ++ L F T ++F T
Sbjct: 294 IYGVPSVYGVVTLPASVR-EGINIFLDGHIPAENLR----FRTEALQFRIADATEDLQND 348
Query: 164 SLNSLQILPTRKKHL--TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV 221
S + P+ KK +L G + +++G +GKTTL+ LAG L
Sbjct: 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--- 405
Query: 222 SGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDK 281
G+ + + Q TVR+ + + +F L+
Sbjct: 406 EGQDIPKLN----------VSMKPQKIAPKFPGTVRQLFF-----KKIRGQF-----LNP 445
Query: 282 RENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341
+ DV +K L +D D V +SGG+
Sbjct: 446 QFQT---------DV-------------------VKPLRIDDIIDQEVQH-----LSGGE 472
Query: 342 KRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI 387
+RV AL +DE S LDS IR+ I TA I
Sbjct: 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 78/262 (29%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEF 235
+ RPG + L+G GK+T L LAGK +L GR + F
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYF 147
Query: 236 EPQRVAAYIS-------------QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKR 282
+ Y + Q+ ++I ++ + + EL K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQK-------------VGELLKL 193
Query: 283 ENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQK 342
E + Y+K+L L+ V I +SGG+
Sbjct: 194 RMEKSPE---------------------DVKRYIKILQLE-----NVLKRDIEKLSGGEL 227
Query: 343 RRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397
+R G + DE S+ LD IR + + +
Sbjct: 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LLAPTKYVICV-------EH 279
Query: 398 DLF------DDIILLSDGLIVY 413
DL D + ++ VY
Sbjct: 280 DLSVLDYLSDFVCIIYGVPSVY 301
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 30/210 (14%)
Query: 878 MPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGS 937
M M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G GS
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 938 ITISG----YLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF 993
I +G + Y Q V+ L + +E
Sbjct: 56 IQFAGQPLEAWSATK-LALHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTEL---- 106
Query: 994 IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPT 1046
+ ++ + L+ + LS + +R+ +A + ++ +DEP
Sbjct: 107 LNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161
Query: 1047 SGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
+ LD + + + + + G +V + H
Sbjct: 162 NSLDVAQQSALDKILSALSQQGLAIVMSSH 191
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 52/272 (19%), Positives = 81/272 (29%), Gaps = 93/272 (34%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 239 RVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
+ L LD +SGG+ +RV +
Sbjct: 106 LLNDV---------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 353 ---------LFMDEISNGLDSSTTFQIVNSIRQNIHILN--------GTAVISLLQPAPE 395
L +DE N LD + Q + G A++
Sbjct: 146 PQANPAGQLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS----- 190
Query: 396 TYDL------FDDIILLSDGLIVYLGPRELVL 421
+DL LL G ++ G RE VL
Sbjct: 191 -HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 32/223 (14%)
Query: 856 KGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDK---LVLLNGVSGAFRPGVLTALMG 912
K + F P+ + F ++ VD+ +E ++ K L G R G + ++G
Sbjct: 330 KDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG 389
Query: 913 VSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970
+G GKTT + +LAG T G + +T++ K Q I TVY
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYEGTVY 435
Query: 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 1030
E L + E+++ + + L V LS + +R+ IA
Sbjct: 436 ELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIA 483
Query: 1031 VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVV 1072
L+ + I +DEP++ LD V R +++ +E +T +
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-12
Identities = 63/293 (21%), Positives = 103/293 (35%), Gaps = 83/293 (28%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
+ L+ G IR G + ++GP GKTT + LAG + + G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTV 419
Query: 232 MDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
++PQ + A E TV E +L+++D + +
Sbjct: 420 A--YKPQYIKA--------EYEGTVYE----------------LLSKIDSSKLNSNFYKT 453
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
++ LK LG+ D V D +SGG+ +RV L
Sbjct: 454 ---EL-------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA-VISLLQPAPETYDLFDDIIL 405
+DE S LD + +IR + TA V+ D+++
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE------------HDVLM 534
Query: 406 ---LSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQE--VTSRKDQQQY 453
+SD LIV+ G M R+G+ FL +T R+D
Sbjct: 535 IDYVSDRLIVFEGEPGRHGRALPPM----GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSITISGYLKK-- 946
+ + G++ ++G +G GKTT + +LAG+ + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
Q F R+ + + V + + L +VD + EE+++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066
+ LS + +R+ IA L+ F DEP+S LD R V R ++
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1067 TGRTVV 1072
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 71/229 (31%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL---KVSGRVTYNGHNMDEF 235
+ I++ G + ++GP +GKTT + LAG+L +L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 236 EPQRVAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGSRFDMLTELDKREN 284
+ Q+ + + + VRE L + D + + ++
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL----------KKVDEVGKFEEVVK 214
Query: 285 EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344
E ++ + D L L SGG+ +R
Sbjct: 215 ELELEN--------------------VLDRELHQL------------------SGGELQR 236
Query: 345 VTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILN-GTAVI 387
V AL F DE S+ LD ++ IR + N G AV+
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 8e-19
Identities = 55/238 (23%), Positives = 87/238 (36%), Gaps = 46/238 (19%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTR 952
L +G + G + ++G +G GKTT +L G T GS+T +
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------Q 330
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
I Y Q + TV + +L + T F EE+ + + L+ L +S V
Sbjct: 331 ILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
+ LS + ++L IA L + +D+P+S LD IV + +K + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1073 CTI-H-----------------QPSIDIFESFDEAIPGVQKIKDGCNPATWMLEVTAR 1112
I H +P + +K G N LEVT R
Sbjct: 440 FIIDHDLSIHDYIADRIIVFKGEPEKAGLAT------SPVTLKTGMNEFLRELEVTFR 491
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-11
Identities = 35/189 (18%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI 962
+ + ++G +G GKTT++ +LAG + + + K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRG----KEI 74
Query: 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMF---------------IEEIMELVELNPLR 1007
++ +Y + L + V+ ++ + +E+ EL+ + L
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+ LS +RL +A L+ + D+P+S LD R + + ++ ++
Sbjct: 133 N-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 1068 GRTVVCTIH 1076
+ V+ H
Sbjct: 187 NKYVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 83/293 (28%)
Query: 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232
+K L +G + G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 293 DIDV---FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
D V A+ ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 350 ALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA-VISLLQPAPETYDL-FDD 402
LA +D+ S+ LD + + +I++ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSI-- 448
Query: 403 IILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQE--VTSRKDQQQY 453
++D +IV+ G E + + G+ +FL+E VT R+D +
Sbjct: 449 HDYIADRIIVFKG--EPEKAGLATSPV--TLKTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 52/340 (15%), Positives = 108/340 (31%), Gaps = 94/340 (27%)
Query: 181 LKDVS-GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFEPQ 238
K + ++ +LG GKTT+L LAG++ + + +V + + F +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGK 72
Query: 239 RVAAYIS-------------QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENE 285
+ Y Q+ + + G+ ++LT++D+R +
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKK 119
Query: 286 AGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV 345
+K ++ + +L SGG +R+
Sbjct: 120 DEVKELLNMTNLW--------------NKDANIL------------------SGGGLQRL 147
Query: 346 TTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAP 394
+L D+ S+ LD + +IR+ +L VI +L
Sbjct: 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD--- 201
Query: 395 ETYDLFDDIILLSDGLIVY------LGPRELVLDFF------ESMGFKCPERKGVADFLQ 442
L D I ++ VY R + +F E+M + E K + +
Sbjct: 202 ---YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVS 258
Query: 443 EVTSRKDQQQYWAHKEMRYRFVTVQEFCEAFQSFHVGQKL 482
++ KD + ++ + Q + G+ +
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNG-EAKEGEII 297
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-18
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L G + G + ++G +G GKTT + +LAG T G I +T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVG 1012
I TVYE L + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1013 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTV 1071
+ LS + +R+ IA L+ + I +DEP++ LD V R +++ +E +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1072 V 1072
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 40/189 (21%)
Query: 903 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSITISGYLKK--QETFTRISGY 956
+ G++ ++G +G GK+T + +LAG+ G + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 957 CEQNDIH----SPLV---------TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL 1003
+I V V E L +EE+++ +EL
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELL------------KKADETGKLEEVVKALEL 148
Query: 1004 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
+ + + LS + +R+ IA L+ N + F DEP+S LD R R ++
Sbjct: 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 1064 TVETGRTVV 1072
E G++V+
Sbjct: 204 LSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-09
Identities = 67/315 (21%), Positives = 113/315 (35%), Gaps = 85/315 (26%)
Query: 152 IYFLTTCKRLKGSLNSLQILPTRKKHL--TILKDVSGIIRPGSMTLLLGPPSSGKTTLLL 209
I F T +R++ +L P K L+ G I+ G + ++GP GKTT +
Sbjct: 271 IKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVK 330
Query: 210 ALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269
LAG + + G++ ++ ++PQ YI E TV E
Sbjct: 331 MLAGVEEPT---EGKIEWDLTVA--YKPQ----YIKAD----YEGTVYE----------- 366
Query: 270 GSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329
+L+++D + + ++ LK LG+ D V
Sbjct: 367 -----LLSKIDASKLNSNFYKT-EL---------------------LKPLGIIDLYDREV 399
Query: 330 GDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGT 384
+ +SGG+ +RV L +DE S LD + +IR + T
Sbjct: 400 NE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454
Query: 385 A-VISLLQPAPETYDLFDDIIL---LSDGLIVYLGPRELVLDFFESMGFKCPERKGVADF 440
A V+ D+++ +SD L+V+ G E R+G+ F
Sbjct: 455 ALVVE------------HDVLMIDYVSDRLMVFEG--EPGKYGRALPPM--GMREGMNRF 498
Query: 441 LQE--VTSRKDQQQY 453
L +T R+D
Sbjct: 499 LASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 71/229 (31%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL-----DSSLKVSGRV-TYNGHNM 232
+ +++ G + ++GP +GK+T + LAG+L + G + + G+ +
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 233 DEFEPQRVAAYI-----SQHDNHIGEMT---VRETLAFSARCQGVGSRFDMLTELDKREN 284
+ + I Q+ + I + V E L + D +L++
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 285 EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344
++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 345 VTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILN-GTAVI 387
V AL F DE S+ LD +IR + G +V+
Sbjct: 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR---RLSEEGKSVL 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSITISGYLKKQETF 950
+L +S G L G++GAGKTTL+++L T +G++ + G + + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 951 T------RISGYCEQ---NDIHSPLVTVYESLL--YSAWLRLPPEVDSETRKMFIEEIME 999
+ I G+ V + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSHSLLEKFQEGE-RVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 1000 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1060 TVK--NTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDG 1099
+ + ++ H +I +F + + +KDG
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKIL----LLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 5e-17
Identities = 52/260 (20%), Positives = 87/260 (33%), Gaps = 60/260 (23%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-----D 233
TILK +S I G +L G +GKTTLL L SG V G
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 234 EFEPQRVAAYISQ--HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
++ ++S + V + + S + +G + + + +
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIRN--------- 140
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV------ 345
LK++G+ A I +S G+K+RV
Sbjct: 141 -------------------EAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARAL 176
Query: 346 TTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISL----LQPAPETYDLFD 401
P + L +DE + GLD +++ + A+I ++ F
Sbjct: 177 MGQPQV-LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA---NFS 231
Query: 402 DIILLSDGLIVYLGPRELVL 421
I+LL DG + G E +L
Sbjct: 232 KILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 34/191 (17%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGSITISGYLKKQETFTRISGYCEQNDI 962
G ++G +G+GKTTL+ ++G +G+I I+G + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 963 HSPL-VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVSGL 1019
+ VTV + + E+ R + E+++ ++L LR+ + L
Sbjct: 83 AYEIGVTVNDIVYL------YEELKGLDRDL-FLEMLKALKLGEEILRRK------LYKL 129
Query: 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
S Q + ++ L + P I+ +DEP +DA ++ R +K E G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 1080 IDIFESFDEAI 1090
D
Sbjct: 184 -----ELDMLN 189
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 67/240 (27%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L++++ + G ++LGP SGKTTLL A++G L SG + NG + +
Sbjct: 19 FSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNY 73
Query: 239 RVAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
Y + + + +TV + + +G+ D+
Sbjct: 74 I--RYSTNLPEAYEIGVTVNDIVYLYEELKGL----------DRDL-------------- 107
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
E LK L L + + + +S GQ V T ALA
Sbjct: 108 ----FLE----------MLKALKLG---EEI-LRRKLYKLSAGQSVLVRTSLALASQPEI 149
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
+ +DE +D++ I I++ ++ T++L D + L +
Sbjct: 150 VGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THEL-DMLNLYKEYKAY 197
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 69/283 (24%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
LK ++ I+ G +T +LG GK+TL G L S SGR+ ++ +D +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSR--KG 78
Query: 241 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292
+ + DN + +V + ++F A + E+ KR + A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352
LK G++ D +S GQK+RV A+A
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV----AIA 155
Query: 353 ---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403
L +DE + GLD +I+ + + + G +I D++
Sbjct: 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNV 214
Query: 404 ILLSDGLIVYLGPRELVL---DFFESMGFKCPERKGVADFLQE 443
++ +G ++ G + V + + + P + + L+E
Sbjct: 215 FVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 35/218 (16%)
Query: 878 MPQEM-KLQGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 931
+ + K++ ++ D L G++ + G +TA++G +G GK+TL G + +
Sbjct: 3 LEDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS- 61
Query: 932 GYITGSITISGYL--KKQETFTRIS---GYCEQNDIHSP---LV--TVYESLLYSAW-LR 980
+G I ++ ++ G Q+ P L +VY+ + + A ++
Sbjct: 62 ---SGRILFDNKPIDYSRKGIMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMK 114
Query: 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1040
LP + E RK ++ ++ + L+ LS Q+KR+ IA LV P ++
Sbjct: 115 LPED---EIRKR-VDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 1041 FMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1077
+DEPT+GLD + +M+ + E G T++ H
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L VS G + G +G+GK+TL+ ++AG T +G + G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 953 ISGYCEQNDIHSP---LV--TVYESLLYSAWLRLPPE---VDSETRKMFIEEIMELVELN 1004
G Q P V++ + ++ + D + + +++ ME V L+
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAMEFVGLD 127
Query: 1005 P---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
+ P LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 128 FDSFKDRV----P--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 1062 KNTVETGRTVVCTIHQ 1077
+ G+TV+ H
Sbjct: 182 EKWKTLGKTVILISHD 197
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 68/255 (26%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRV 240
L++VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G +E +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 241 AAYISQH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
Q+ ++ V + +AF+ + + +A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG-----ISGGQKRRVTTGPALA-- 352
++ +GLD + + +SGG+KRRV A+A
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV----AIASV 152
Query: 353 -------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405
L +DE GLD ++ + + G VI + + D +++
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVV 210
Query: 406 LSDGLIVYLG-PREL 419
L G V+ G E
Sbjct: 211 LEKGKKVFDGTRMEF 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGSITISGYLK 945
E+ + L V+ + G ++MG SG+GK+T+++++ + T G +I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 946 KQETFTR---ISGYCEQ--NDIHSPLVTVYES----LLYSAWLRLPPEVDSETRKMFIEE 996
+ T R I G+ Q N I PL+T E+ L++ + E R+ E
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKRALE 127
Query: 997 IMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1056
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1057 VMRTVKN-TVETGRTVVCTIHQPSI 1080
+M+ +K E G+TVV H ++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 56/249 (22%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+ LK+V+ I+ G ++GP SGK+T +L + G LD G V + ++ +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKP--TEGEVYIDNIKTNDLDD 74
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV- 296
+ + IG F V +F+++ L EN V
Sbjct: 75 DELTKI---RRDKIG---------F------VFQQFNLIPLLTALEN-----------VE 105
Query: 297 ----FMKAAATEGQEANVLTDYYLKVLGLDICADTLVG---DEMIRGISGGQKRRV---- 345
F A G+E LK+ L + +++ SGGQ++RV
Sbjct: 106 LPLIFKYRGAMSGEERRKRALECLKMAEL---EERFANHKPNQL----SGGQQQRVAIAR 158
Query: 346 --TTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403
P + + D+ + LDS T +I+ + + ++ +G V+ ++ + I
Sbjct: 159 ALANNPPI-ILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVV-VVTHDINVARFGERI 215
Query: 404 ILLSDGLIV 412
I L DG +
Sbjct: 216 IYLKDGEVE 224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 8e-14
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGSITISGYLKKQETFT 951
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 952 R---ISGYCEQ--NDIHSPLVTVYES----LLYSAWLRLPPEVDSETRKMFIEEIMELVE 1002
R + G+ Q I P +T E+ +L + K E L+
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAK---ERGEYLLS 126
Query: 1003 LNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
+GL LS +++R+ IA L P ++F DEPT LD+ V
Sbjct: 127 E-------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 1058 MRTVKNTVETGRTVVCTIHQPSI 1080
M E G ++V H+ +
Sbjct: 180 MDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 55/246 (22%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
ILK +S ++ G ++G SGK+TLL L G LD+ G+V G +D
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNE 73
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ ++ ++ +G F V ++ EL EN + V
Sbjct: 74 KELSLLRNR---KLG---------F------VFQFHYLIPELTALEN---------VIVP 106
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG---ISGGQKRRV------TTG 348
M +EA +Y L LGL GD++ R +SGG+++RV
Sbjct: 107 MLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANE 158
Query: 349 PALALFMDEISNGLDSSTTFQIVNSIRQNIHILN--GTAVISLLQPAPETYDLFDDIILL 406
P L LF DE + LDS+ T ++++ + +N GT+++ ++ E +L + +
Sbjct: 159 PIL-LFADEPTGNLDSANTKRVMDIFLK----INEGGTSIV-MVTHERELAELTHRTLEM 212
Query: 407 SDGLIV 412
DG +V
Sbjct: 213 KDGKVV 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 91/595 (15%), Positives = 169/595 (28%), Gaps = 165/595 (27%)
Query: 50 LPTYNSPFRKMITNSSGEATEADDVS-TLGPQARQKLIDKLVREPSVDNEHFLL--KLRD 106
L + F + DV ++ ID ++ + L L
Sbjct: 22 LSVFEDAFVDNF--------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 107 -------RFDAVGIDLPEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCK 159
+F V L + Y+ FL S +I
Sbjct: 74 KQEEMVQKF--VEEVL---RINYK--------FLMSPIKTEQRQPSMMTRMYIEQR---D 117
Query: 160 RLKGSLNSLQILP----TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTL-------- 207
RL N Q+ +R + L+ +RP L+ G SGKT +
Sbjct: 118 RLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 208 ---------------------------LLALAGKLDSSLKVSGRVTYNG-HNMDEFEPQR 239
L L ++D + + N + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AE 233
Query: 240 VAAYISQH---------DNHIGEMTVR--ETL-AFSARCQG-VGSRFDMLTELDKRENEA 286
+ + N V+ + AF+ C+ + +RF +T+
Sbjct: 234 LRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 287 GIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346
I D T + ++L LK L L R V
Sbjct: 288 HISLDHHSMTL-----TPDEVKSLL----LKYLDCRP--QDL-------------PREVL 323
Query: 347 TG-P-ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI- 403
T P L++ + I +GL + ++ VN + I+ + +++L+PA E +FD +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESS--LNVLEPA-EYRKMFDRLS 379
Query: 404 ILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQQQYWAHKEMRYR- 462
+ I P L+ + + + ++ ++ KE
Sbjct: 380 VFPPSAHI----PTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQP--KESTISI 428
Query: 463 ---FVTVQEFCEAFQSFHVGQKLTAELRTP--FDKSKSHPAALSMKEYG-VGKKELLKAN 516
++ ++ E + H + + P FD P L Y +G L
Sbjct: 429 PSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIE 485
Query: 517 ISREFLLMKRNSFVYI---F---KLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIY 565
L + V++ F K+ ST S S+ +++ Y
Sbjct: 486 HPERMTLFRM---VFLDFRFLEQKIRHDSTAWNASGSIL-------NTLQQLKFY 530
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 6e-13
Identities = 115/746 (15%), Positives = 220/746 (29%), Gaps = 231/746 (30%)
Query: 114 DLPEVEVRYENLNVEAEAFLASKALPTFTNFFTNIIEFIYFLTTCKRLKGSLNSLQILPT 173
+ E + +Y+++ L F + F + + CK ++ S IL
Sbjct: 10 ETGEHQYQYKDI------------LSVFEDAFVDNFD-------CKDVQDMPKS--ILSK 48
Query: 174 RK-KHLTILKD-VSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS---LKVSGRVTYN 228
+ H+ + KD VSG +R LL S + + + L + L +
Sbjct: 49 EEIDHIIMSKDAVSGTLR--LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 229 GHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
+M YI Q D + V F+ V SR +L R+ +
Sbjct: 104 QPSMMTRM------YIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLEL 147
Query: 289 KPDPDIDVF-MKAAATEGQEANVLTDYYLK-VLGLDICADTLVGDEMIRGI---SGGQKR 343
+P ++ + + + G K + LD+C V +M I +
Sbjct: 148 RPAKNVLIDGVLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 344 RVTTGPALALFMDE-ISNGLDSSTTFQIVNS--IRQNIHILNGTAVISLL--QPAPETYD 398
P L M + + +D + T + +S I+ IH + + LL +P
Sbjct: 194 S----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLL 248
Query: 399 LFDDIILLSDGLIVYLGPRELVLDFFESMGFKCP----ER-KGVADFLQEVTSRKDQQQY 453
+ ++ + + C R K V DFL T+
Sbjct: 249 VLLNV---QNAKAW------------NAFNLSCKILLTTRFKQVTDFLSAATTTHISL-- 291
Query: 454 WAHKEMRYRFVTVQEFCEAFQSFHVGQKLTAELRTPFDKSKSHPAALSMKEYGVGKKELL 513
T E + + + +L P + ++P LS+ + E +
Sbjct: 292 ---DHHSMTL-TPDEVKSLLLKY-LDCRPQ-DL--PREVLTTNPRRLSI----IA--ESI 337
Query: 514 KANISREFLLMKRNSFVYIFKLTQLSTVAMVSMSLFFRTKMPKDSVNDGGIYIGASFFAV 573
+ ++ +++ ++ +L+T+ + P +
Sbjct: 338 RDGLAT------WDNWKHV-NCDKLTTI----IESSLNVLEPAE---------------- 370
Query: 574 MMTMFNGMSDISMTIAKLPVFYKQRDLRFYPAWSYALPAWIVKIPISFLEVAAWVFLTYY 633
MF+ +L VF IP L + W +
Sbjct: 371 YRKMFD----------RLSVF--PPS---------------AHIPTILLSLI-WFDVIKS 402
Query: 634 VIGF-------------DPNVGRFF--KQYLLLLFVNQMATALFRFIGAAGRNMIVAMSF 678
+ P YL L + AL R IV
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVD--- 451
Query: 679 GSFALLMLFALGGFVLSRDDINKWWIWGYWCSPMMY----AQNAIVANEF----LGHSW- 729
+ + F + D Y+ S + + ++ F L +
Sbjct: 452 -HYNIPKTFDSDDLIPPYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 730 ----RKFTTNSNESLGV----QALKS-RGFF-PHAYWYWLGLGAVIGFLL-----VFNVG 774
R +T N S + Q LK + + + Y + A++ FL +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 775 FT--LSLTFLNKFEKPRAVIFDESES 798
+T L + + + E IF+E+
Sbjct: 564 YTDLLRIALMAEDE----AIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-10
Identities = 67/451 (14%), Positives = 139/451 (30%), Gaps = 119/451 (26%)
Query: 768 LLVFNVGFTLSLTFLNKFEKPRAV--------IFDESESNEKDNRTGGTLQSSTSGSSSS 819
L VF F + + + P+++ I ++ R TL S
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMV 79
Query: 820 LR-TRSGESGDY--IWERSSSMS---SSVTETAVEIRNLIRKKGMVLPFEPHSLTFDEVV 873
+ +Y + + S +T +E R+ R F ++++ +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPY 137
Query: 874 YSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGG 932
+ L + K VL++G + G+GKT + +DV K
Sbjct: 138 LKL----RQALLELRPAKNVLIDG-------------VL--GSGKTWVALDVCLSYKVQC 178
Query: 933 YITGSI---------TISGYLKKQETF-TRISG-YCEQNDIHSPLVTVYESLLYSAWLRL 981
+ I + L+ + +I + ++D S + S+ A LR
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELR- 235
Query: 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG-------------LSTEQRKRLT 1028
L++ P L+ L V L T + K++T
Sbjct: 236 -----------------RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 1029 IAVELVANPSIIFMDEPTSGL-DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087
+ A + I +D + L +++++ + + V T + + I
Sbjct: 279 DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333
Query: 1088 EAIPGVQKIKDGCNPATW----MLEVTARSQELALGVDFHNIYKLSDLYRRNKALIEELS 1143
+ I+DG ATW + + + ++ + ++ + LS
Sbjct: 334 -----AESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLS 379
Query: 1144 KPV-PGSKDIYFPTQYSRSFFMQFMACLWKQ 1173
V P + PT ++ +W
Sbjct: 380 --VFP--PSAHIPT--------ILLSLIWFD 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-09
Identities = 91/603 (15%), Positives = 174/603 (28%), Gaps = 192/603 (31%)
Query: 20 WRSTSEGTFPRSPKEEDDDEEALKRAALENLPTYNSPFRKMITNSSGEATEADDVSTLGP 79
+ + T R P + L N F K +VS
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQVFAKY------------NVS---- 132
Query: 80 QARQKLIDKLVREPSVDNEHFLLKLRDRFDAVGIDLPEVEVRYENLNVEAEA-----FLA 134
R + KL R+ LL+LR P +N+ ++ ++A
Sbjct: 133 --RLQPYLKL-RQA-------LLELR----------PA-----KNVLIDGVLGSGKTWVA 167
Query: 135 SKALPTFTNFFTNIIEF-IYFLT--TCKRLKGSLNSLQIL--------PTRKKHLTILKD 183
++ ++F I++L C + L LQ L +R H + +K
Sbjct: 168 LDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 184 VSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD--------SSLKVSGRV---TYNGHNM 232
I+ LL P + LL+ L ++ +S ++ T
Sbjct: 226 RIHSIQAELRRLLKSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 233 DEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEA-GIKPD 291
D +IS + + +T E + + + R L E P
Sbjct: 279 DFLSAATTT-HISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDLPR------EVLTTNP- 327
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLG------LDICADTLVGDEMIRGISGGQKRRV 345
+ A ++ D + V ++ + L E ++
Sbjct: 328 ----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMF 375
Query: 346 TTGPALALFMDE--ISNGLDSSTTFQIV--NSIRQNI-HILNGTAVISLL--QPAPETY- 397
L++F I + ++ + I+ ++ ++N SL+ QP T
Sbjct: 376 D---RLSVFPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 398 --DLFDDIILLSDGLIVYLGPREL---VLDFFESMGFKCPERKGVADFLQEVTSRKDQQQ 452
++ ++ + + L ++D + + D + DQ
Sbjct: 428 IPSIYLELKVKLENE------YALHRSIVDHYNIPKTFDSD-----DLI---PPYLDQ-- 471
Query: 453 YWA-----H---KEMRYRFVTVQEFCEAFQSFH-VGQKLTAELRTPFDKSKSHPAALS-M 502
Y+ H E R F F F + QK+ + T ++ S S L +
Sbjct: 472 YFYSHIGHHLKNIEHPERM---TLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQL 527
Query: 503 KEYGVGKKELLKANISRE--------FL-------------------LMKRNSFVYIFKL 535
K Y K + + E FL LM + ++
Sbjct: 528 KFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 536 TQL 538
Q+
Sbjct: 585 KQV 587
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQE 948
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + I+ + E
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-KEPAE 78
Query: 949 --------TFTRISGYCEQNDIHS-PLVTVYE-----------SLLYSAWLRLPPEVDSE 988
TF Q +TV E S L S + + + E
Sbjct: 79 LYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 989 TRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
+ +I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1049 LDARAAAIVMRTVKNTVETGRTVV 1072
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 53/208 (25%), Positives = 78/208 (37%), Gaps = 38/208 (18%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
L VS + G +TL++GP SGK+TL+ + G L + GRV + ++ EP
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 238 QRVAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
+ Y I Q + EMTV E L C G + + + E
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
M A + L+ L L D G+ +SGGQ + V G AL
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 170
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQ 376
+ MDE G+ I N + +
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 78/235 (33%)
Query: 881 EMKLQGVH----EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRK 929
++ + + D V+L+ ++ + + G + ++G SG+GK+TL G+
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ- 65
Query: 930 TGGYITGSITISGY-LKK--------------QET--FTRISGYCEQNDIHSPLVTVYES 972
+ I G+ L Q+ R ++ ++
Sbjct: 66 --------VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDN 102
Query: 973 LLYSAWLRLPPEVDSETRKMFIEE----------IMELVELNPLR-QSLVGLPGVSGLST 1021
+ + P + E + I EL ++VG G LS
Sbjct: 103 ISLAN-----PGMSVEK----VIYAAKLAGAHDFISEL----REGYNTIVGEQGAG-LSG 148
Query: 1022 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
QR+R+ IA LV NP I+ DE TS LD + ++MR + + GRTV+ H
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 55/264 (20%), Positives = 103/264 (39%), Gaps = 94/264 (35%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL-----DSSLKVSGRVTYNGHNMD 233
IL +++ I+ G + ++G SGK+TL KL +G+V +GH++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPE---NGQVLIDGHDLA 74
Query: 234 EFEPQ--RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+P R +G + +++ + + S +N + P
Sbjct: 75 LADPNWLR---------RQVG-VVLQDNVLLN------RS---------IIDNISLANPG 109
Query: 292 PDIDVFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKR 343
++ + AA + A L + Y +T+VG+ +G SGGQ++
Sbjct: 110 MSVEKVIYAA----KLAGAHDFISELREGY----------NTIVGE---QGAGLSGGQRQ 152
Query: 344 RVTTGPALA---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI----S 388
R+ A+A L DE ++ LD + I+ ++ + I G +I S
Sbjct: 153 RI----AIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAHRLS 205
Query: 389 LLQPAPETYDLFDDIILLSDGLIV 412
++ A D II++ G IV
Sbjct: 206 TVKNA-------DRIIVMEKGKIV 222
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSITISGY-LK--KQETF 950
L ++ G AL+G +G+GK+T+ +L R Y G I I G + + +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 951 TRISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELN 1004
I G Q N+ T+ ++LY EV T+ + + I L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---- 141
Query: 1005 PLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P + ++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V++
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 1064 TVETGRTVVCTIH 1076
+ RT++ H
Sbjct: 201 -LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 53/259 (20%), Positives = 100/259 (38%), Gaps = 85/259 (32%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
LK ++ I G+ L+G SGK+T+ L D G + G N+++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----AEGDIKIGGKNVNK---- 85
Query: 239 RVAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+++ + IG + ++T+ F+ + + + N K D +
Sbjct: 86 -----YNRNSIRSIIG-IVPQDTILFN----------ETI-----KYNILYGKLDATDEE 124
Query: 297 FMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTG 348
+KA + A + L + DT+VG+ +G+ SGG+++R+
Sbjct: 125 VIKAT----KSAQLYDFIEALPKKW----------DTIVGN---KGMKLSGGERQRI--- 164
Query: 349 PALA---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI----SLLQPA 393
A+A + DE ++ LDS T + ++ + +I S + A
Sbjct: 165 -AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED---LRKNRTLIIIAHRLSTISSA 220
Query: 394 PETYDLFDDIILLSDGLIV 412
+ IILL+ G IV
Sbjct: 221 -------ESIILLNKGKIV 232
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 7e-11
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%)
Query: 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRI 953
LLN + + G +G GK+TLM +A + G+ T + Y+ + +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV-EHDI---- 504
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
D +V + + E T++ I++ + ++
Sbjct: 505 -------DGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP-- 545
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 --ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 8e-06
Identities = 38/249 (15%), Positives = 69/249 (27%), Gaps = 68/249 (27%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVT---------YNGH 230
+ D++ S ++GP +GK+TL+ L G+L + SG V H
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRIAYIKQH 744
Query: 231 NMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQG---------VGSRFDMLTELDK 281
E RET+ + R + +
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 282 RENEAGIKPDPDIDVFMKAAATEGQEA----------------NVLTDYYLKVLGLDICA 325
+ K + + G ++ L + + K++
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 326 DTLVGDEM--------------------------IRGISGGQKRRVTTGPALA-----LF 354
+ L + IRG+SGGQK ++ +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 355 MDEISNGLD 363
+DE +N LD
Sbjct: 925 LDEPTNYLD 933
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 50/234 (21%)
Query: 860 LPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 919
L F+ + F+ V +S + D L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFS------------YADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 920 TLM-------DVLAGRKTGGYITGSITISGY-LKK--QETFTRISGYCEQ-----NDIHS 964
T++ D+ +G I I G + + Q + G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELNPLR-QSLVGLPGVSGLSTE 1022
T+ +++ Y EV++ + I + IM P ++ VG G+ LS
Sbjct: 143 ---TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF----PEGYRTQVGERGLK-LSGG 194
Query: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
+++R+ IA ++ P II +DE TS LD + ++ V RT + H
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 86/260 (33%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L+DVS + PG L+GP +GK+T+L L D S SG + +G ++ +
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQ---- 120
Query: 239 RVAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD-PDID 295
++Q +HIG + ++T+ F+ +N + + +
Sbjct: 121 -----VTQASLRSHIG-VVPQDTVLFND---------------TIADNIRYGRVTAGNDE 159
Query: 296 VFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMIRG--ISGGQKRRVTT 347
V AAA Q A + + Y T VG+ RG +SGG+K+RV
Sbjct: 160 VE--AAA---QAAGIHDAIMAFPEGY----------RTQVGE---RGLKLSGGEKQRV-- 199
Query: 348 GPALA---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNG--TAVI----SLLQP 392
A+A + +DE ++ LD+S I S+ + + T V+ S +
Sbjct: 200 --AIARTILKAPGIILLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVN 254
Query: 393 APETYDLFDDIILLSDGLIV 412
A D I+++ DG IV
Sbjct: 255 A-------DQILVIKDGCIV 267
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 26/196 (13%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSITISGY----LKKQE 948
L G++ + G AL+G SG GK+T + ++ Y + G ++I G + +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 949 TFTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEE-IMELVELN 1004
I G Q P++ T+ E++ Y E++ ++ + IM+L
Sbjct: 462 LREII-GVVSQE----PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---- 512
Query: 1005 PLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063
P + +LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 513 PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 1064 TVETGRTVVCTIHQPS 1079
GRT + H+ S
Sbjct: 572 -AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 61/257 (23%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 846 AVEIRNLIRKKGMVLPFEPHSLTFDEVVYSVDMPQEMKLQGVH------EDKLVLLNGVS 899
A I +I K + + L + + +V GV VL G+S
Sbjct: 1001 ASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ------FSGVVFNYPTRPSIPVL-QGLS 1053
Query: 900 GAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGY-LKKQETFT 951
+ G AL+G SG GK+T++ D +AG S+ + G +K+
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG---------SVFLDGKEIKQ----L 1100
Query: 952 RISGYCEQNDIHS--PLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
+ Q I S P++ ++ E++ Y R+ + I + ++
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEANIHQF 1153
Query: 1007 RQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
SL VG G LS Q++R+ IA LV P I+ +DE TS LD + +V
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1060 TVKNTVETGRTVVCTIH 1076
+ + GRT + H
Sbjct: 1213 AL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 61/281 (21%), Positives = 101/281 (35%), Gaps = 103/281 (36%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
P+RK + ILK ++ ++ G L+G GK+T + + D G V+ +G +
Sbjct: 398 PSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQD 453
Query: 232 MDEFEPQ--RVAAYISQHDNHIG---------EMTVRETLAFSARCQGVGSRFDMLTELD 280
+ + R IG T+ E + + G D
Sbjct: 454 IRTINVRYLR---------EIIGVVSQEPVLFATTIAENIRY-------GRE-------D 490
Query: 281 KRENEAGIKPDPDIDVFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMI 334
+E ++ A +EAN L + DTLVG+
Sbjct: 491 VTMDE------------IEKAV---KEANAYDFIMKLPHQF----------DTLVGE--- 522
Query: 335 RGI--SGGQKRRVTTGPALA---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNG 383
RG SGGQK+R+ A+A L +DE ++ LD+ + + ++ + G
Sbjct: 523 RGAQLSGGQKQRI----AIARALVRNPKILLLDEATSALDTESEAVVQAALDK---AREG 575
Query: 384 --TAVI----SLLQPAPETYDLFDDIILLSDGLIVYLGPRE 418
T VI S ++ A D I G+IV G +
Sbjct: 576 RTTIVIAHRLSTVRNA-------DVIAGFDGGVIVEQGNHD 609
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 47/200 (23%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGY-LK- 945
L +S +P + A G SG GK+T+ AG ITI G +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 946 -KQETFTRISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSE-----TRKMFI 994
E + G+ Q T+ E+L Y L + E F
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAG------TIRENLTYG----LEGDYTDEDLWQVLDLAFA 118
Query: 995 EE-IMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
+ + + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 119 RSFVENMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 1053 AAAIVMRTVKNTVETGRTVV 1072
+ ++V + + + ++ GRT +
Sbjct: 174 SESMVQKALDSLMK-GRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 7e-07
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 81/213 (38%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL------KVSGRVTYNGHNMD 233
IL+D+S +P S+ GP GK+T+ SL +G +T +G +D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSLLERFYQPTAGEITIDGQPID 67
Query: 234 EFEPQ---RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP 290
+ ++SQ D+ I T+RE L + G++
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEG 102
Query: 291 DPDIDVFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGDEMIRGI--SGGQK 342
D + + A + D +T VG+ RG+ SGGQ+
Sbjct: 103 DYTDEDLWQVL----DLAFARSFVENMPDQL----------NTEVGE---RGVKISGGQR 145
Query: 343 RRVTTGPALA---------LFMDEISNGLDSST 366
+R+ A+A L +DE + LDS +
Sbjct: 146 QRL----AIARAFLRNPKILMLDEATASLDSES 174
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 66/296 (22%), Positives = 106/296 (35%), Gaps = 101/296 (34%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
L ++ I G++ ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------S 67
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP---DPDIDV 296
V AY+ Q I ++RE + F G + + + I+ PD+++
Sbjct: 68 V-AYVPQQ-AWIQNDSLRENILF-------GCQLE-----EPYYRSV-IQACALLPDLEI 112
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPALA-- 352
TE +G+ +G+ SGGQK+RV +LA
Sbjct: 113 LPSGDRTE------------------------IGE---KGVNLSGGQKQRV----SLARA 141
Query: 353 --------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVI------SLLQPAPETYD 398
LF D +S +D+ I ++ +L I S L
Sbjct: 142 VYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV----- 195
Query: 399 LFDDIILLSDGLIVYLGP-RELVLDFFESMGFKCPERKG-VADFLQEVTSRKDQQQ 452
D II++S G I +G +EL+ R G A+FL+ S
Sbjct: 196 --DVIIVMSGGKISEMGSYQELL------------ARDGAFAEFLRTYASHHHHHH 237
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-Q 238
+K + + G + L+G +GKTT L A+AG + + G++ +NG ++
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 239 RVAAYISQ--HDNHI-GEMTVRETL---AFSAR-CQGVGSRFDMLTEL-----DKRENEA 286
I+ I E+TV E L A++ + +G+ + + L ++ +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 287 G 287
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 8e-07
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 887 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY- 943
V+ + + G+ G + L+G +GAGKTT + +AG R G I +G
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK----GKIIFNGQD 69
Query: 944 LKKQETFTRIS-GYC---EQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
+ + G E I L TVYE+L+ A+ R D E K +E I
Sbjct: 70 ITNKPAHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 1000 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1058
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1059 RTVKNTVETGRTV 1071
++ + G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 58/274 (21%), Positives = 100/274 (36%), Gaps = 95/274 (34%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
+LKD++ I G + + G +GKT+LL+ + G+L+ G++ ++G R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------R 70
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP---DPDIDV 296
+ ++ SQ + I T++E + F G +D + R IK + DI
Sbjct: 71 I-SFCSQF-SWIMPGTIKENIIF-------GVSYD-----EYRYRSV-IKACQLEEDISK 115
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPALA-- 352
F + +G+ GI SGGQ+ R+ +LA
Sbjct: 116 FAEKDNIV------------------------LGE---GGITLSGGQRARI----SLARA 144
Query: 353 --------LFMDEISNGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETY 397
L LD T +I S + + ++ I L+ A
Sbjct: 145 VYKDADLYLLDSPFG-YLDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA---- 196
Query: 398 DLFDDIILLSDGLIVYLGP-RELV---LDFFESM 427
D I++L +G + G EL DF +
Sbjct: 197 ---DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 48/213 (22%), Positives = 76/213 (35%), Gaps = 63/213 (29%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISG----- 942
L G++ PG +TAL+G +G+GK+T+ G+ + + G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 943 ----YLKKQETFTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIE 995
YL Q + Q PL+ + E++ Y L E I
Sbjct: 86 YDHHYLHTQ-----V-AAVGQE----PLLFGRSFRENIAYG----LTRTPTMEE----IT 127
Query: 996 E----------IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044
I P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 128 AVAMESGAHDFISGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 1045 PTSGLDARAAAIVMRTV-KNTVETGRTVVCTIH 1076
TS LDA V R + ++ RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 92/224 (41%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSL------KVSGRV 225
P +L+ ++ + PG +T L+GP SGK+T+ +L G+V
Sbjct: 27 PNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKV 76
Query: 226 TYNGHNMDEFEPQ---RVAAYISQHDNHIGE-----MTVRETLAFSARCQGVGSRFDMLT 277
+G + +++ A + Q E + RE +A+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY--------------- 115
Query: 278 ELDKRENEAGIKPDPDIDVFMKAAATEGQEANV------LTDYYLKVLGLDICADTLVGD 331
G+ P ++ A E+ Y DT VG+
Sbjct: 116 ---------GLTRTPTMEEITAVA----MESGAHDFISGFPQGY----------DTEVGE 152
Query: 332 EMIRGI--SGGQKRRVTTGPALA---------LFMDEISNGLDS 364
G SGGQ++ V ALA L +D ++ LD+
Sbjct: 153 ---TGNQLSGGQRQAV----ALARALIRKPRLLILDNATSALDA 189
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 909 ALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-LKKQETFTRISGYCEQNDIHSP 965
L+G +GAGK+ ++++AG + G + ++G + R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD----RGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025
++VY ++ Y LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1026 RLTIAVELVANPSIIFMDEPTSGLDAR 1052
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 64/181 (35%)
Query: 196 LLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ------HD 248
LLGP +GK+ L +AG + G V NG ++ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEA 308
++V +A+ R V E D+R E
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM---------------------- 110
Query: 309 NVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDE-ISNGL 362
+ LG+ + D +SGG+++RV AL L +DE +S +
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA-V 157
Query: 363 D 363
D
Sbjct: 158 D 158
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 47/198 (23%), Positives = 68/198 (34%), Gaps = 74/198 (37%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
++ VS IR G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP- 84
Query: 239 RVAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
++G MTV + ++F R + V E+D R E
Sbjct: 85 --------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK-----DEMDARVREL-- 129
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------------LRFMRLE-----SYANRFPHELSGGQQQRV--- 154
Query: 349 PALA---------LFMDE 357
ALA L DE
Sbjct: 155 -ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 883 KLQGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGS 937
+ GV + GVS R G + L+G SG+GKTT++ ++AG R T G
Sbjct: 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG----D 71
Query: 938 ITISGYLKKQETFTRISGYCEQNDIHS--------PLVTVYESLLYSAWLRLPPEVDSET 989
+ I G + T + + ++ +TVY+++ + + P+ + +
Sbjct: 72 VWIGG-----KRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 990 RKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
R + E++ + L LS Q++R+ +A L P ++ DEP + +
Sbjct: 125 R---VRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 1050 DAR 1052
D +
Sbjct: 177 DTQ 179
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 57/274 (20%), Positives = 101/274 (36%), Gaps = 96/274 (35%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
+LKD++ I G + + G +GKT+LL+ + G+L+ G++ ++G R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------R 100
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKP---DPDIDV 296
+ ++ SQ ++ I T++E + +G +D + R IK + DI
Sbjct: 101 I-SFCSQ-NSWIMPGTIKENI--------IGVSYD-----EYRYRSV-IKACQLEEDISK 144
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTTGPALA-- 352
F + +G+ GI SGGQ+ R+ +LA
Sbjct: 145 FAEKDNIV------------------------LGE---GGITLSGGQRARI----SLARA 173
Query: 353 --------LFMDEISNGLDSSTTFQIVNS-IRQNIHILNGTAVI------SLLQPAPETY 397
L LD T +I S + + ++ I L+ A
Sbjct: 174 VYKDADLYLLDSPFG-YLDVLTEKEIFESCVCK---LMANKTRILVTSKMEHLKKA---- 225
Query: 398 DLFDDIILLSDGLIVYLGP-RELV---LDFFESM 427
D I++L +G + G EL DF +
Sbjct: 226 ---DKILILHEGSSYFYGTFSELQNLRPDFSSKL 256
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 58/209 (27%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITIS 941
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 942 GY---------LKK------QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL---PP 983
G+ L+ Q+ S TV E++L R
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 984 EVDSETRKMFIEE-IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041
EV + + IM L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1042 MDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
+DE TS LD + +I+ + + RT
Sbjct: 501 LDEATSALDLESESIIQEALDVLSK-DRT 528
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 53/200 (26%)
Query: 878 MPQEMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 933
M + + + + +LN +S + PG + ++G SG GKTTL+ LAG + G
Sbjct: 1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG- 59
Query: 934 ITGSITISGYLKKQETFTRISGYC-----EQNDI-----------HSPLVTVYESLLYSA 977
I++SG I + + H +TVY ++ Y
Sbjct: 60 ---EISLSG--------KTIFSKNTNLPVRERRLGYLVQEGVLFPH---LTVYRNIAYGL 105
Query: 978 WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVE 1032
R IE ++EL G+ ++G LS Q++R +A
Sbjct: 106 GNGKGRTAQERQR---IEAMLELT----------GISELAGRYPHELSGGQQQRAALARA 152
Query: 1033 LVANPSIIFMDEPTSGLDAR 1052
L +P +I +DEP S LD +
Sbjct: 153 LAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 54/290 (18%), Positives = 93/290 (32%), Gaps = 95/290 (32%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L D+S + PG + ++G GKTTLL LAG SG ++ +G + +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFS-KNT 73
Query: 239 RVAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
+ + +G +TV +A+ + + +R
Sbjct: 74 NLPV----RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTA-----QERQRIEAM-- 122
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
L++ G+ A +SGGQ++R
Sbjct: 123 ---------------------------LELTGISELA-----GRYPHELSGGQQQRA--- 147
Query: 349 PALA---------LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398
ALA + +DE S LD QI + + +AV ++D
Sbjct: 148 -ALARALAPDPELILLDEPFSA-LDEQLRRQIREDMIAALRANGKSAVFV-------SHD 198
Query: 399 ------LFDDIILLSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFL 441
D I ++ G I+ P EL ++ P A F+
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 53/189 (28%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITIS 941
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 942 GY-LKKQETFTRIS-----GYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETR 990
G+ ++ + + Q ND T+ ++ Y+A E E
Sbjct: 404 GHDVRD---YKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ- 449
Query: 991 KMFIEE------IMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
IE+ ME +E P +++G G S LS QR+R+ IA L+ + ++ +D
Sbjct: 450 ---IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILD 505
Query: 1044 EPTSGLDAR 1052
E TS LD
Sbjct: 506 EATSALDTE 514
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 44/206 (21%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE 948
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 949 TFTRISGYCEQNDIHS-PL------VTVY--ESLLYSAWLRL---PPEVDSETRKMFIEE 996
S L V + ++S R P S+ I +
Sbjct: 83 ------------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWK 127
Query: 997 IMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
+ + V L + + G + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 128 VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Query: 1051 ARAAAIVMRTVKNTVETGRTVVCTIH 1076
I+ RT+K V
Sbjct: 188 PVTYQIIRRTLKQ--AFADCTVILCE 211
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 58/186 (31%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSITISGY-LKK 946
L ++ G AL+G SG+GK+T+ D+ G I + G+ L++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 947 QETFTRIS-----GYCEQ-----NDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEE 996
+T S Q ND TV ++ Y+ + +R E+
Sbjct: 410 ---YTLASLRNQVALVSQNVHLFND------TVANNIAYA-------RTEEYSR----EQ 449
Query: 997 I---------MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046
I M+ + +++G GV LS QR+R+ IA L+ + I+ +DE T
Sbjct: 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEAT 508
Query: 1047 SGLDAR 1052
S LD
Sbjct: 509 SALDTE 514
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 58/306 (18%), Positives = 101/306 (33%), Gaps = 82/306 (26%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV--SGRVTYNG 229
+ + L +VS + G + ++G +GK+TL+ + L+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTEGSVLVDG 89
Query: 230 HNMDEFEPQRVAAY------ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRE 283
+ + I QH N + TV +A E+ +R
Sbjct: 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRV 144
Query: 284 NEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKR 343
E L ++GL D D +SGGQK+
Sbjct: 145 TE-----------------------------LLSLVGL---GDK--HDSYPSNLSGGQKQ 170
Query: 344 RVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQ-----NIHILNGT---AVISLL 390
RV ALA L D+ ++ LD +TT I+ ++ + IL T V+
Sbjct: 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK-- 228
Query: 391 QPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEVTSRKDQ 450
+ D + ++S+G ++ V + F P+ F+Q
Sbjct: 229 -------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTLHLDIP 273
Query: 451 QQYWAH 456
+ Y
Sbjct: 274 EDYQER 279
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 40/174 (22%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
LN VS G + ++G SGAGK+TL+ + R T GS+ + G + T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDG-----QELTT 94
Query: 953 ISGY---CEQNDI-----HSPLV---TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+S + I H L+ TV+ ++ P E+D+ + + EL+
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL------PLELDNTPKDEVKRRVTELL 148
Query: 1002 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
L VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 149 SL-------VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 40/193 (20%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GSITISGY-LK 945
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G +
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 946 KQETFTR--------------ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRK 991
+ R + G VT+ L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYPVEVPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 992 MFIEEIMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
+++ +EL++ + L + L G G G ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1049 LDARAAAIVMRTV 1061
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 67/299 (22%), Positives = 107/299 (35%), Gaps = 104/299 (34%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-Q 238
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G N+ E P +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRFDMLTELDKRENEAGIKPDP 292
R + LAF Q GV + L + +
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKL-----GREV 113
Query: 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR-----GISGGQKRR--- 344
+ F L++L D + + G SGG+K+R
Sbjct: 114 GVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNEI 154
Query: 345 ---VTTGPALALFMDEISNGLDSSTTFQI---------VNSIRQNIHILNGTAVIS---- 388
+ P A+ +DE +GLD I VN++R G VI+
Sbjct: 155 LQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGPN---FGALVITHYQR 204
Query: 389 LL---QPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQEV 444
+L QP D + ++ DG +V G EL L+ E KG ++V
Sbjct: 205 ILNYIQP--------DKVHVMMDGRVVATGGPELALEL---------EAKGYEWLKEKV 246
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 71/195 (36%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
L ++S + G ++LGP +GKT L +AG SGR+ +G ++ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 238 QRVAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+ A++ Q H M V++ L F R + + + KR +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI--------KDPKRVLDT----- 111
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
+ L ++ + D +SGG+++RV AL
Sbjct: 112 ------------------------ARDLKIE-----HLLDRNPLTLSGGEQQRV----AL 138
Query: 352 A---------LFMDE 357
A L +DE
Sbjct: 139 ARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 9e-05
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 42/173 (24%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+ +S G ++G +GAGKT ++++AG G I + G + T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG----RILLDG-----KDVTD 66
Query: 953 ISGYCEQNDIHS--------PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN 1004
+S ++DI P + V ++L + +R+ ++ R + + +++
Sbjct: 67 LSPE--KHDIAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIE 118
Query: 1005 PL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
L LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 119 HLLDRNPLT----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 56/282 (19%), Positives = 93/282 (32%), Gaps = 85/282 (30%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L +V+ I G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 239 RVAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
V D IG +T E +AF + E+ KR E
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK-----EEIRKRVEEV-- 124
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
K+L + L + R +SG Q++RV
Sbjct: 125 ---------------------------AKILDIH---HVL--NHFPRELSGAQQQRVALA 152
Query: 349 PAL-----ALFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD---- 398
AL L +DE SN LD+ +++ L T ++ ++D
Sbjct: 153 RALVKDPSLLLLDEPFSN-LDARMRDSARALVKEVQSRLGVTLLVV-------SHDPADI 204
Query: 399 --LFDDIILLSDGLIVYLG-PREL--------VLDFFESMGF 429
+ D + +L G +V +G P +L V +
Sbjct: 205 FAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSITISGYLKK 946
K+V L+ V+ G ++G SGAGKTT M ++AG + G Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R G Q P +T +E++ + + + R +EE+ ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 1007 -----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052
R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 134 LNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 1019 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1072
LS +R L +A L S++ +DEPT LD ++ ++ ++ V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1073 CTIHQPSIDIFESFDEAI 1090
H ++ ++ D I
Sbjct: 309 LVSHDE--ELKDAADHVI 324
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 64/299 (21%), Positives = 107/299 (35%), Gaps = 102/299 (34%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKV-SGRVTYNGHNMDEFEP- 237
IL+ +S + PG + ++GP SGK+TL LAG+ +V G V + G ++ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRFDMLTELDKRENEAGIKPD 291
R I +AF Q GV ++F + T L+ + G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR-----GISGGQKRR-- 344
D F + + +L + ++++ G SGG+K+R
Sbjct: 135 DRFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKRND 174
Query: 345 ----VTTGPALALFMDEISNGLDSSTTFQI---------VNSIRQNIHILNGTAVIS--- 388
P L + +DE +GLD I VNS+R +++
Sbjct: 175 ILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDGK---RSFIIVTHYQ 224
Query: 389 -LL---QPAPETYDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQE 443
+L +P D + +L G IV G LV E +G ++
Sbjct: 225 RILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQL---------EEQGYGWLTEQ 266
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 46/194 (23%)
Query: 889 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GSITISGY-LK 945
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G++ G L
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 946 KQETFTR--------------ISGYCEQNDIHSPLVTVYESLLYSAW-----LRLPPEVD 986
R I G V+ L +A R +D
Sbjct: 88 ALSPEDRAGEGIFMAFQYPVEIPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 987 SETRKMFIEEIMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043
+ +EE + L+++ L +S+ VG G G ++KR I V P + +D
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQMAVLEPELCILD 189
Query: 1044 EPTSGLDARAAAIV 1057
E SGLD A +V
Sbjct: 190 ESDSGLDIDALKVV 203
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 66/200 (33%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
T L +++ I+ G LLGP SGK+TLL +AG + SG++ ++ ++ E P
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 238 --------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
Q A Y H MTV + +AF +
Sbjct: 74 DRNVGLVFQNWALY--PH------MTVYKNIAFPLELRKA-------------------- 105
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
P +ID ++ A K+L +D L + +SGGQ++RV
Sbjct: 106 PREEIDKKVREVA--------------KMLHID---KLL--NRYPWQLSGGQQQRVAIAR 146
Query: 350 AL-----ALFMDE-ISNGLD 363
AL L +DE +SN LD
Sbjct: 147 ALVKEPEVLLLDEPLSN-LD 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 48/200 (24%)
Query: 881 EMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GS 937
E+KL+ + + LN ++ + G AL+G SG+GK+TL+ +AG T G
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGK 59
Query: 938 ITISGYLKKQETFTRISGYCEQNDIHS---------------PLVTVYESLLYSAWLRLP 982
I ++ P +TVY+++ + LR
Sbjct: 60 IYFDEKD--------------VTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105
Query: 983 PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042
P + + + + E+ +++ ++ L L P LS Q++R+ IA LV P ++ +
Sbjct: 106 PREEIDKK---VREVAKMLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLL 157
Query: 1043 DEPTSGLDA--RAAAIVMRT 1060
DEP S LDA R +R
Sbjct: 158 DEPLSNLDALLRLE---VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 66/200 (33%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP- 237
T + ++ I+ G +LLGP GKTT L +AG + + GR+ + ++ P
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81
Query: 238 --------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
Q A + H MTV E +AF + +
Sbjct: 82 DRNISMVFQSYAVW--PH------MTVYENIAFPLKIKKF-------------------- 113
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
P +ID ++ AA ++L ++ + L + +SGGQ++RV
Sbjct: 114 PKDEIDKRVRWAA--------------ELLQIE---ELL--NRYPAQLSGGQRQRVAVAR 154
Query: 350 AL----ALF-MDE-ISNGLD 363
A+ + MDE +SN LD
Sbjct: 155 AIVVEPDVLLMDEPLSN-LD 173
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 46/169 (27%)
Query: 910 LMGVSGAGKTTLMDVLAGRKTGGYIT-GSITISGYLKKQETFTRISGYCEQNDIHS---- 964
L+G SG GKTT + ++AG + T G I +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRD--------------VTYLPPKDRN 84
Query: 965 -----------PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
P +TVYE++ + ++ P+ + + R + EL+++ L L
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRY 138
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1060
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 139 PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 66/201 (32%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+ + VS ++ G LLGP GKTT LL LAG + SG + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 238 ---------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGI 288
Q A Y H MTV E +AF R + +
Sbjct: 73 KYREVGMVFQNYALY--PH------MTVFENIAFPLRARRI------------------- 105
Query: 289 KPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTG 348
+++ + A + L +D + L D +SGGQ++RV
Sbjct: 106 -SKDEVEKRVVEIA--------------RKLLID---NLL--DRKPTQLSGGQQQRVALA 145
Query: 349 PAL----ALF-MDE-ISNGLD 363
AL + DE +SN LD
Sbjct: 146 RALVKQPKVLLFDEPLSN-LD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 58/205 (28%)
Query: 881 EMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GS 937
+++ + + K+ ++GVS + G AL+G SG GKTT + +LAG T G
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGE 59
Query: 938 ITISGYLKKQETFTRISGYCEQNDIHS---------------PLVTVYESLLYSAWLRLP 982
I L NDI P +TV+E++ + R
Sbjct: 60 IYFDDVL--------------VNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI 105
Query: 983 PEVDSETRKMFIEEIMELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037
+ + E R + EI + ++ L Q LS Q++R+ +A LV P
Sbjct: 106 SKDEVEKR---VVEIARKLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQP 152
Query: 1038 SIIFMDEPTSGLDA--RAAAIVMRT 1060
++ DEP S LDA R MR
Sbjct: 153 KVLLFDEPLSNLDANLRMI---MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 39/224 (17%)
Query: 878 MPQEM-KLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 934
M + + +H+ +L GVS R G + +++G SG+GK+T + + +
Sbjct: 2 MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PS 59
Query: 935 TGSITISGY-LKKQETFTRISGYCEQNDIHS---------------PLVTVYESLLYSAW 978
G+I ++G + ++N + +TV E+++ +
Sbjct: 60 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-- 117
Query: 979 LRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVE 1032
P +V ++ E ++ + VG+ LS Q++R++IA
Sbjct: 118 ---PIQVLGLSKHDARERALKYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARA 167
Query: 1033 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1076
L P ++ DEPTS LD V+R ++ E G+T+V H
Sbjct: 168 LAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 66/203 (32%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS---LKVSGRVTYNGHNMDEF 235
T ++++S ++ G +LLGP GKTT L +AG + S + + ++ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 236 EP---------QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEA 286
P Q A Y H MTV + +AF + + V
Sbjct: 77 PPKDRDIAMVFQSYALY--PH------MTVYDNIAFPLKLRKV----------------- 111
Query: 287 GIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346
P +ID ++ A ++LGL + L + R +SGGQ++RV
Sbjct: 112 ---PRQEIDQRVREVA--------------ELLGLT---ELL--NRKPRELSGGQRQRVA 149
Query: 347 TGPAL----ALF-MDE-ISNGLD 363
G A+ +F MDE +SN LD
Sbjct: 150 LGRAIVRKPQVFLMDEPLSN-LD 171
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 46/241 (19%)
Query: 858 MVLPFEPHSLTFDEVVYSVDMPQEMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSG 915
M H + V M Q + + + + L +L G++ R G + ++G SG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSG 60
Query: 916 AGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHS----------- 964
+GK+T + L + + G I I G + + +++
Sbjct: 61 SGKSTFLRCLNLLED--FDEGEIIIDG--------INLKA--KDTNLNKVREEVGMVFQR 108
Query: 965 ----PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG----- 1015
P +TV ++ + P +V R+ + MEL++ VGL
Sbjct: 109 FNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDK-------VGLKDKAHAY 156
Query: 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1075
LS Q +R+ IA L P I+ DEPTS LD V+ +K G T+V
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
Query: 1076 H 1076
H
Sbjct: 217 H 217
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.98 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.98 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.97 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.97 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.97 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.97 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.97 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.97 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.97 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.97 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.97 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.97 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.97 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.97 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.97 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.94 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.93 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.93 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.92 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.88 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.87 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.86 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.86 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.85 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.84 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.78 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.77 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.76 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.73 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.72 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.71 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.69 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.69 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.69 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.68 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.67 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.67 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.66 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.65 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.64 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.64 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.63 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.61 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.59 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.58 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.57 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.56 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.56 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.56 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.54 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.54 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.52 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.51 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.5 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.5 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.49 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.49 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.48 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.47 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.47 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.47 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.46 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.46 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.46 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.45 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.43 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.43 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.42 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.4 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.39 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.39 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.39 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.37 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.37 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.35 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.34 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.34 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.33 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.33 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.32 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.32 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.31 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.3 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.29 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.29 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.29 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.27 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.24 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.24 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.23 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.23 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.22 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.22 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.21 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.21 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.21 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.18 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.18 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.18 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.18 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.15 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.15 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.14 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.12 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.12 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.11 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.09 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.08 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.08 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.06 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.05 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.04 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.04 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.04 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.02 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.01 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.01 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.0 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.99 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.99 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.98 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.97 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.97 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.94 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.94 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.94 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.93 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.93 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.92 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.92 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.91 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.91 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.91 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.9 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.9 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.88 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.88 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.86 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.86 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.86 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.86 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.86 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.83 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.82 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.8 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.78 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.77 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.76 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.76 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.75 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.73 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.71 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.66 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.64 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.61 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.6 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.6 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.59 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.57 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.57 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.57 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.57 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.56 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.56 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.55 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.52 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.51 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.49 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.48 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.48 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.48 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.47 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.4 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.37 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.37 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.35 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.33 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.32 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.31 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.3 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.28 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.26 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.22 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.2 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.19 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.14 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.13 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.12 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.07 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.03 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.02 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.0 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 97.99 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.97 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.96 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.95 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.95 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.92 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.92 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.92 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.91 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.8 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.78 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.78 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.73 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.72 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.72 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.72 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.68 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.66 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.66 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.62 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.59 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.59 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.46 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.46 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.44 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.43 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.42 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.4 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.36 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.35 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.33 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.33 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.32 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.28 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.27 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.27 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.26 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.26 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.25 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.24 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.23 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.21 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.21 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.21 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.2 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.19 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.18 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.17 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.16 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.12 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.08 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.08 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.07 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.04 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.99 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.97 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.93 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.93 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.84 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.84 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.81 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 96.8 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.79 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.75 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.73 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.73 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.66 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.65 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.6 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.58 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.51 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.49 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.49 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.47 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.46 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.45 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.43 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.35 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.34 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.33 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.33 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.33 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.33 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.3 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.28 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.28 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.25 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.23 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.19 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.15 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.11 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.1 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.1 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.08 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.04 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.02 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.94 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.91 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.9 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.89 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.88 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.83 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.83 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.78 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.78 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.78 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.77 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.75 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.73 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.72 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.72 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.65 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 95.64 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.62 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.62 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.62 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.61 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.59 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.59 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.56 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.54 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.53 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.48 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.37 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.34 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.32 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.3 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.3 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.28 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.21 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.15 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.14 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.09 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.07 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.03 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.02 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.97 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.97 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.94 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.9 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.88 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.82 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.78 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.72 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.65 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.58 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.53 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.5 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.5 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.44 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.44 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.41 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.37 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.37 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.33 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.33 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.27 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.22 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.17 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.14 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.14 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.11 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.07 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.02 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.0 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.99 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.96 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.94 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 93.9 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 93.89 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 93.87 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 93.85 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.83 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.82 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 93.81 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 93.8 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.8 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.72 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 93.67 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.66 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 93.66 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 93.63 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.59 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.56 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.55 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.54 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.51 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 93.48 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 93.43 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 93.35 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.31 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 93.31 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 93.31 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.25 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.18 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 93.18 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=671.76 Aligned_cols=200 Identities=28% Similarity=0.394 Sum_probs=166.5
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+||++.++.. ....+|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 369999999988532 22469999999999999999999999999999999999876 457999999998
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
.+. ..+|+.++||||++.++. -||||||.|+. .|.+.+. +.++++++..++.+ -.|+.||..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 467889999999999986 59999997752 1233333 34677788777754 357788865
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| .+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++. ...+|+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~ 1284 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADC 1284 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSE
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCE
Confidence 4 5899999999999999999999999999999999999999999999865 48999999999874 345676
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=637.12 Aligned_cols=200 Identities=28% Similarity=0.389 Sum_probs=160.2
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++.. ....+|+|||+.++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 368999999887531 12358999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-------PLRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 1014 (1436)
... ...++.+|||+|++.+++ .||+||+.++... ...+.+ .+.+.++..++. +-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 643 346778999999997764 6999999875321 112222 234445554443 3456777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
| ..|||||||||+|||+|+++|+||+|||||||||+.+...|++.|++. .+|+|||+++|+++. + ...|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSE
T ss_pred C-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCE
Confidence 3 589999999999999999999999999999999999999999999885 459999999999975 3 44777
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=513.50 Aligned_cols=184 Identities=24% Similarity=0.302 Sum_probs=150.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. + ..|+++|+.+++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 466777765432 1 258999999999999999999999999999999997653 3577764
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
.+.+||++|+....+.+||.|++....... ....+.++++++.++|.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 245899999987778899999886531100 011345788999999998887764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++|++. .+....|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adr 541 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 541 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999874 5999999999964 45666787
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=505.80 Aligned_cols=184 Identities=25% Similarity=0.314 Sum_probs=149.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. + ..|+++|+.+++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 466777765432 1 368999999999999999999999999999999997653 3577764
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998777889999988643111100 1245778899999987777664 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||..+...|++.|+++++ .|.|||+++|++. .+....|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~dr 471 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 471 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999874 5999999999964 46667787
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=491.14 Aligned_cols=173 Identities=27% Similarity=0.276 Sum_probs=144.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
..|+++|+.+++||++||+||||||||||+++|+|... +.+|+|.+++ +.++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 35778899999999999999999999999999999765 3478888765 347999998777678899999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.+...... . . ....++++++.++|.+..+..+ ..|||||||||+||++|+.+|+||+|||||+|||+.
T Consensus 351 l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHhhhhcc--c-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 976421111 0 1 1234688999999988877764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+++.|+++++ .|.|||+++|+.. ++....|+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDr 455 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADR 455 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999975 5899999999974 46667788
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=504.79 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=143.7
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC-CC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD-NH 250 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~ 250 (1436)
..+++.+.+|+|+|+.|++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..
T Consensus 442 s~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGT 507 (986)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCC
T ss_pred EEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEccccccc
Confidence 344456679999999999999999999999999999999995 222 3333211 12368999874 67
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLV 329 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 329 (1436)
++.+||.|++.+ ...+ . ...++.+++.+||+ +..+..
T Consensus 508 ~~~ltv~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~- 545 (986)
T 2iw3_A 508 HSDTSVLDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMP- 545 (986)
T ss_dssp CTTSBHHHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSB-
T ss_pred ccCCcHHHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCC-
Confidence 889999999975 1100 0 01245678999995 455544
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
+..|||||||||+||+++ +|||||||+|||+.++.++.+.|++ .+ +++|.++|+..++.+++|+|+
T Consensus 546 ----~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g-~tvIivSHdl~~l~~~adrii 616 (986)
T 2iw3_A 546 ----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CG-ITSITISHDSVFLDNVCEYII 616 (986)
T ss_dssp ----GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SC-SEEEEECSCHHHHHHHCSEEE
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CC-CEEEEEECCHHHHHHhCCEEE
Confidence 446999999999998776 4999999999999999999999986 24 455558899999999999999
Q ss_pred EecCCeEE-EecChHHH
Q 038815 405 LLSDGLIV-YLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv-~~G~~~~~ 420 (1436)
+|++|+++ +.|+.+++
T Consensus 617 ~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 617 NYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp EEETTEEEEEESCHHHH
T ss_pred EEECCeeecCCCCHHHH
Confidence 99999997 68877654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=499.96 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=129.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----cccEEEEcCcc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLL---------------------LALAGKLDSSLK----VSGRVTYNGHN 231 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL---------------------~~LaG~~~~~~~----~~G~I~~~G~~ 231 (1436)
..++|+|||++|++||+++|+||||||||||| +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 788888777521 25677788766
Q ss_pred CCCCCccceEEEEcCCCC-------------------CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCC
Q 038815 232 MDEFEPQRVAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDP 292 (1436)
Q Consensus 232 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1436)
.... +++.++|++|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5322 2334555555433 24678999999874321100 000000
Q ss_pred ChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhhhh-------hhheeCCCCCCCH
Q 038815 293 DIDVFMKAAATEGQEANVLTDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGPAL-------ALFMDEISNGLDS 364 (1436)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~a~-------vlllDEptsgLDs 364 (1436)
.+. ...+.... ..+++.+||++. .+.. +..|||||||||+||+|+ +|+|||||+|||+
T Consensus 172 -----~~~---~~~~~~~~-~~~l~~~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----ARL---ILREIRDR-LGFLQNVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HHH---HHHHHHHH-HHHHHHcCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000 00001111 235888999764 4444 457999999999998766 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHH
Q 038815 365 STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELV 420 (1436)
Q Consensus 365 ~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~ 420 (1436)
.++.++.+.|+++.+ .+ ++||.++|+...+ ..+|+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~g-~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LG-NTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-TT-CEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999865 34 5555678888764 569999999 89999999988765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=478.59 Aligned_cols=171 Identities=20% Similarity=0.201 Sum_probs=138.9
Q ss_pred EEeeceEeeEeCC-----cEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCC
Q 038815 893 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 893 ~iL~~vs~~i~~G-----e~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 967 (1436)
.+++|+|+.+++| |++||+||||||||||+++|+|...+ .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c----cCCcEEEecccccccCCc
Confidence 4688888888888 78999999999999999999997653 24531 1 124589999987666668
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
||+|++... .+. ... ....++++++.++|.+..+..+ ..|||||||||+||++|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 111 1235678999999998888764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1048 GLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+.++..+++.|++++ +.|.|||+++|+.. ++....|+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDr 537 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADK 537 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999986 45999999999974 56667788
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=369.25 Aligned_cols=211 Identities=23% Similarity=0.350 Sum_probs=178.2
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC----CCCCc-cceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM----DEFEP-QRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~----~~~~~-~~~~~ 242 (1436)
++++.+++++.++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++ ....+ ++.++
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEE
Confidence 345566667788999999999999999999999999999999999999998 99999999987 32222 46799
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD 322 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 322 (1436)
||+|+..++|.+||+||+.|+.+.++... .+.+..++++++.+||+
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~ 129 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGIS 129 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCG
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCc
Confidence 99999999999999999999865442211 01223467789999998
Q ss_pred ccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 323 ICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 323 ~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
+..+. ++..|||||||||+||||++ |||||||+|||+.++.++.+.++++.+.. ++++|.++|+..++.
T Consensus 130 ~~~~r-----~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 130 ELAGR-----YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEAL 203 (359)
T ss_dssp GGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHH
T ss_pred hHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 87664 45679999999999998875 99999999999999999999888876544 455666899999999
Q ss_pred hhcCeEEEecCCeEEEecChHHHH
Q 038815 398 DLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 398 ~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++|+|++|++|+++..|+++++.
T Consensus 204 ~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 204 QYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=368.30 Aligned_cols=210 Identities=25% Similarity=0.362 Sum_probs=180.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++...+|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecC
Confidence 44556667788999999999999999999999999999999999999998 9999999999876654 3679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~- 128 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLD- 128 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT-
T ss_pred CcCCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhc-
Confidence 99999999999999987654321 0 112334678899999987665
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+..|||||||||+||+|++ |||||||+|||+..+.++.+.|+++.+..+ +++|.++|+..++..++|+
T Consensus 129 ----r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp ----CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSE
T ss_pred ----CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCE
Confidence 455679999999999998875 999999999999999999999999876544 4555589999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 204 IVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEEeCHHHHH
Confidence 9999999999999999874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=364.38 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=174.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDNH 250 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 250 (1436)
.+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999997 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
++.+||+||+.|+.+..+.. + .+....++++|+.+||++.++.
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------~------------------------~~~~~~v~~lL~~vgL~~~~~~--- 159 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------K------------------------DEVKRRVTELLSLVGLGDKHDS--- 159 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------H------------------------HHHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcC---
Confidence 99999999999987654321 0 1123346788999999876654
Q ss_pred CcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 331 DEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
++..|||||||||+||+|++ |||||||+|||+.++.++++.|+++.+..+ ++|+.++|+..++.++||+|++
T Consensus 160 --~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 160 --YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp --CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 45679999999999998874 999999999999999999999999876544 5556688999999999999999
Q ss_pred ecCCeEEEecChHHHH
Q 038815 406 LSDGLIVYLGPRELVL 421 (1436)
Q Consensus 406 L~~G~iv~~G~~~~~~ 421 (1436)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=346.00 Aligned_cols=204 Identities=24% Similarity=0.349 Sum_probs=169.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++... ..+.+|+|||+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 56788887764210 12569999999999999999999999999999999999876 35899999998754
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 038815 947 QET-------FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVSG 1018 (1436)
Q Consensus 947 ~~~-------~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 1018 (1436)
... .++.+|||+|++.+++.+||+||+.++...+.....+.++..+.+.++++.++|.+. .+.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 211 134699999999999999999999997665432234556667788999999999874 3554 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|++. +.+..|+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~ 214 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGER 214 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4467777
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=360.18 Aligned_cols=210 Identities=26% Similarity=0.342 Sum_probs=177.1
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||+++++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecC
Confidence 34455556678999999999999999999999999999999999999998 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++. .+. +.+..++++++.+||++..+.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~----------~~~------------------------~~~~~v~~~l~~~~L~~~~~r 129 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRI----------SKD------------------------EVEKRVVEIARKLLIDNLLDR 129 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCS----------HHH------------------------HTTHHHHHHHHHTTCGGGTTS
T ss_pred cccCCCCCHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCCchHhcC
Confidence 9999999999999997654321 000 112346778999999877664
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+. +++.++|+..++..++|+
T Consensus 130 -----~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~~~~adr 203 (359)
T 2yyz_A 130 -----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI-TSVYVTHDQAEAMTMASR 203 (359)
T ss_dssp -----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHHHHhCCE
Confidence 45579999999999998874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 204 IAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=358.97 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=177.5
Q ss_pred ccccccc-ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcC
Q 038815 169 QILPTRK-KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 169 ~~~~~~~-~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
+++.+++ +++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|
T Consensus 18 ~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 18 VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEec
Confidence 3455555 5567999999999999999999999999999999999999997 9999999999865443 467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~ 140 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYAN 140 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT
T ss_pred CcccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhc
Confidence 999999999999999986543211 0 012234678899999987766
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
. .+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|
T Consensus 141 r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 141 R-----FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-TSVFVTHDQEEALEVAD 214 (355)
T ss_dssp S-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCS
T ss_pred C-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHHHHhCC
Confidence 4 45679999999999988874 9999999999999999999999998664454 45558899999999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|+++..|+++++.
T Consensus 215 ri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 215 RVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999998874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=360.05 Aligned_cols=210 Identities=25% Similarity=0.390 Sum_probs=177.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecC
Confidence 34455556678999999999999999999999999999999999999997 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+.
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r 129 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNR 129 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTC
T ss_pred cccCCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhC
Confidence 99999999999999986543211 0 0122346788999999876654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|+
T Consensus 130 -----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adr 203 (362)
T 2it1_A 130 -----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-TTVYVTHDQAEALAMADR 203 (362)
T ss_dssp -----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC-EEEEECCCHHHHHHhCCE
Confidence 45679999999999988874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 204 i~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 204 IAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=339.83 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=167.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888877652 3579999999999999999999999999999999999876 35899999998753
Q ss_pred cc------ccc-ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 947 QE------TFT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~~------~~~-~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
.. .++ +.+||++|++.+++.+||+||+.+....+. .+.++..+.++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 579999999999999999999998765432 233445567899999999998877764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.. + +..|+
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~ 208 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHR 208 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998779999999999653 3 66676
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=357.93 Aligned_cols=203 Identities=24% Similarity=0.285 Sum_probs=175.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|+++.+... .+...+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58899999877521 123579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
... ..++.+|||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 431 23567999999999999999999999987654 235666777899999999999888876 4679
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..|++.|+++.++ |.|||+++|+++ .+.+..|+
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDr 233 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 233 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999764 999999999974 56677888
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=343.53 Aligned_cols=210 Identities=23% Similarity=0.345 Sum_probs=173.1
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC--CCC---ccceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD--EFE---PQRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~ 242 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. ... .++.++
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEE
Confidence 344555566678999999999999999999999999999999999999987 999999999874 111 135699
Q ss_pred EEcCCCCCCCCCCHHHHHHhhh-hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 243 YISQHDNHIGEMTVRETLAFSA-RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
||+|++.+++.+||+||+.|+. +..+.. + .+....++.+++.+||
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L 149 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGL 149 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCC
Confidence 9999999999999999999864 322110 0 0112335678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+. +++|+.++|+.+++
T Consensus 150 ~~~~~~~-----~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 150 KDKAHAY-----PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFA 222 (263)
T ss_dssp GGGTTSC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH
T ss_pred chHhcCC-----hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHH
Confidence 8776644 457999999999998877 49999999999999999999999998653 45556688999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++||+|++|++|++++.|+++++.
T Consensus 223 ~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=338.33 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=167.5
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~ 241 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.+
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 34445555577999999999999999999999999999999999999987 9999999998865432 1569
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++.+||+||+.++....+.. + .+....++.+++.+||
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l 130 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGL 130 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999999999999875433210 0 0112235678999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|+ +++|||||+|||+.++..+.+.|+++.+. +.| |+.++|+..++
T Consensus 131 ~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~t-vi~vtHd~~~~ 203 (224)
T 2pcj_A 131 GDKLSRK-----PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTS-IVMVTHERELA 203 (224)
T ss_dssp TTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCE-EEEECSCHHHH
T ss_pred chhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCE-EEEEcCCHHHH
Confidence 8776654 457999999999998877 49999999999999999999999998654 444 55567777776
Q ss_pred HhhcCeEEEecCCeEEEecCh
Q 038815 397 YDLFDDIILLSDGLIVYLGPR 417 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~ 417 (1436)
++||+|++|++|++++.|++
T Consensus 204 -~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 204 -ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp -TTSSEEEEEETTEEEEEEEC
T ss_pred -HhCCEEEEEECCEEEEEeee
Confidence 89999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=357.04 Aligned_cols=218 Identities=24% Similarity=0.355 Sum_probs=180.3
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d 248 (1436)
++.++++++ +|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+.
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCc
Confidence 344555556 999999999999999999999999999999999999998 9999999998865433 46799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.++|.+||+||+.|+.+.++... . ..++++++.+||++..+.
T Consensus 82 ~l~~~ltv~enl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~- 123 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR- 123 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS-
T ss_pred ccCCCCCHHHHHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC-
Confidence 99999999999999765432110 0 235678999999887664
Q ss_pred ccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|
T Consensus 124 ----~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~~~~~~adri 198 (348)
T 3d31_A 124 ----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRI 198 (348)
T ss_dssp ----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEE
T ss_pred ----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 45579999999999998874 999999999999999999999999866444 45555789999999999999
Q ss_pred EEecCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~ 442 (1436)
++|++|+++..|+++++. ..|.....++|+-
T Consensus 199 ~vl~~G~i~~~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 199 AVVMDGKLIQVGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EEESSSCEEEEECHHHHH--------SSCCTTHHHHHHC
T ss_pred EEEECCEEEEECCHHHHH--------hCcccHHHHHhcC
Confidence 999999999999998874 2344444566653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=359.68 Aligned_cols=210 Identities=25% Similarity=0.355 Sum_probs=176.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC------CCc-cceE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE------FEP-QRVA 241 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~~~-~~~~ 241 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.. ..+ ++.+
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCE
Confidence 34455556678999999999999999999999999999999999999998 9999999988754 322 4679
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+||+|+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L 129 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVP----------R------------------------QEIDQRVREVAELLGL 129 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCC
Confidence 99999999999999999999986544211 0 0122346778999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+. .+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++
T Consensus 130 ~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a 203 (372)
T 1g29_1 130 TELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV-TTIYVTHDQVEA 203 (372)
T ss_dssp GGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHH
T ss_pred chHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCC-EEEEECCCHHHH
Confidence 877664 45679999999999998875 9999999999999999999999998664454 455578999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
..++|+|++|++|+++..|+++++.
T Consensus 204 ~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 204 MTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999998874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=343.65 Aligned_cols=209 Identities=27% Similarity=0.335 Sum_probs=175.5
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYI 244 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv 244 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEE
Confidence 344555666778999999999999999999999999999999999999997 9999999999876543 3568999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++...... .+....++.+++.+||.+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~ 134 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLAL 134 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTT
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhH
Confidence 9999888999999999987532210 0012235678999999887
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhh-----------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPAL-----------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~-----------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
.+.. +..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+. ++++|+.++|+.
T Consensus 135 ~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl 208 (266)
T 4g1u_C 135 AQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDL 208 (266)
T ss_dssp TTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCH
T ss_pred hcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCH
Confidence 6654 457999999999996655 47999999999999999999999998754 556667789999
Q ss_pred hhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 394 PETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 394 ~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+++.++||+|++|++|++++.|+++++.
T Consensus 209 ~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 209 NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999998863
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=357.85 Aligned_cols=199 Identities=25% Similarity=0.364 Sum_probs=174.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. +..+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 367788877652 4679999999999999999999999999999999999876 3589999999876
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 43 234577999999999999999999999987664 245666778899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDr 203 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999765 999999999974 67888898
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=346.71 Aligned_cols=211 Identities=24% Similarity=0.311 Sum_probs=171.9
Q ss_pred cccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-----CccceEE
Q 038815 169 QILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----EPQRVAA 242 (1436)
Q Consensus 169 ~~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~ 242 (1436)
+++..+++ ...+|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++... ..++.++
T Consensus 11 ~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEE
Confidence 44455553 345999999999999999999999999999999999999997 99999999987421 1245799
Q ss_pred EEcCCC-CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 243 YISQHD-NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 243 yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
||+|++ ..+..+||+||+.|+....+.. + .+....++.+++.+||
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L 133 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLP----------E------------------------DEIRKRVDNALKRTGI 133 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 999986 3455799999999986543211 0 1122346778999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+.. +..|||||||||+||+|++ |+|||||+|||+.++.++++.|+++.+..+ ++|+.++|+..++
T Consensus 134 ~~~~~~~-----~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 134 EHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIV 207 (275)
T ss_dssp GGGTTSB-----GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSG
T ss_pred chhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHH
Confidence 8776654 4579999999999988774 999999999999999999999999863334 4555578899999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~~ 422 (1436)
.++||+|++|++|++++.|+++++..
T Consensus 208 ~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 208 PLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp GGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=359.73 Aligned_cols=210 Identities=25% Similarity=0.373 Sum_probs=171.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|+
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecC
Confidence 44556666678999999999999999999999999999999999999998 9999999999866544 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||++..+.
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r 137 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNR 137 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTS
T ss_pred cccCCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcC
Confidence 99999999999999976433210 0 0122346788999999877654
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+..|||||||||+||+|++ |||||||+|||+.++.++.+.|+++.+..+. ++|.++|+..++..++|+
T Consensus 138 -----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~a~~~adr 211 (372)
T 1v43_A 138 -----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV-TTIYVTHDQVEAMTMGDR 211 (372)
T ss_dssp -----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHCSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCE
Confidence 45679999999999998874 9999999999999999999999998664454 455578999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++..|+++++.
T Consensus 212 i~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 212 IAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.28 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=169.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378899987652 3579999999999999999999999999999999999876 3589999999875
Q ss_pred c--c---ccccceEEEeccCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 K--Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~--~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. . ..+++.+|||+|++.+++.+||+|++.|.. ..+ ..+.++..+.++++++.++|.+..+..+ ..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 1234455667899999999998877763 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 228 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDR 228 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999877999999999964 35556777
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=356.40 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=171.6
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888877652 4679999999999999999999999999999999999876 3589999999875
Q ss_pred ----cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 946 ----KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ----~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
.. ...++.+|||+|+..++|.+||+||+.|+...+. .+.++.+++++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 2345789999999999999999999999765432 334556678999999999999888774 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||||+.+|++|+|||||||||+.++..+++.|+++. +.|.|||+++|+.. ++..+.|+
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDr 208 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADR 208 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCE
Confidence 999999999999999999999999999999999999999888775 45999999999974 67788898
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=345.15 Aligned_cols=209 Identities=26% Similarity=0.317 Sum_probs=172.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC----------CC--
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----------FE-- 236 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------~~-- 236 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++.. ..
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHH
T ss_pred eeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChh
Confidence 44555555678999999999999999999999999999999999999987 9999999998751 11
Q ss_pred ----ccceEEEEcCCCCCCCCCCHHHHHHhhh-hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHH
Q 038815 237 ----PQRVAAYISQHDNHIGEMTVRETLAFSA-RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVL 311 (1436)
Q Consensus 237 ----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (1436)
.++.++||+|++.+++.+||+||+.++. +..+.. + .+....
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~ 132 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARER 132 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHH
Confidence 1356999999999999999999999854 222110 0 011234
Q ss_pred HHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 038815 312 TDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385 (1436)
Q Consensus 312 ~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ 385 (1436)
++.+++.+||++. .+.. +..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+. + ++
T Consensus 133 ~~~~l~~~~L~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g-~t 205 (262)
T 1b0u_A 133 ALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-G-KT 205 (262)
T ss_dssp HHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CC
T ss_pred HHHHHHHcCCCchhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-C-CE
Confidence 5678999999876 6654 4579999999999988774 9999999999999999999999998653 4 45
Q ss_pred EEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 386 VISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 386 ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 206 vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 555789999999999999999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=344.98 Aligned_cols=200 Identities=24% Similarity=0.356 Sum_probs=169.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 478899988763 12459999999999999999999999999999999999876 3589999999876
Q ss_pred c--c---ccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 K--Q---ETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~--~---~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. . ..+++.+|||+|++ ..+..+||+|++.|+...+ ..+.++..++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 2 1 23567899999986 3344789999999986543 2355666778999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++|++.. +.+..|+
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~dr 213 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDN 213 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCE
Confidence 9999999999999999999999999999999999999999999997 569999999999863 4456677
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=343.81 Aligned_cols=199 Identities=22% Similarity=0.256 Sum_probs=169.2
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378888887652 3579999999999999999999999999999999999876 3589999999875
Q ss_pred cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 038815 946 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLPPEVDSETRKMFIEEIMELVELNPL-R 1007 (1436)
Q Consensus 946 ~~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~ 1007 (1436)
.. ..+++.+|||+|+..+++.+||+||+.+.. ..+ ..+.++..+.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 31 123567999999999999999999999864 322 22344556678999999999987 7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1008 ~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
+..+ ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|+++ ++....|
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7663 579999999999999999999999999999999999999999999999877999999999964 4556678
Q ss_pred h
Q 038815 1088 E 1088 (1436)
Q Consensus 1088 ~ 1088 (1436)
+
T Consensus 222 ~ 222 (262)
T 1b0u_A 222 H 222 (262)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.97 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=164.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc-------ceEEEEcCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-------RVAAYISQHDN 249 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d~ 249 (1436)
.+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 356999999999999999999999999999999999999997 99999999998765432 35999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc-ccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA-DTL 328 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~ 328 (1436)
+++.+||+||+.++......+. ..+ .+....+..+++.+||.+.. +
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~-- 140 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGA-------MSG------------------------EERRKRALECLKMAELEERFAN-- 140 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSC-------CCH------------------------HHHHHHHHHHHHHTTCCGGGTT--
T ss_pred cCCCCcHHHHHHHHHHhhhccC-------CCH------------------------HHHHHHHHHHHHHCCCChhhhh--
Confidence 9999999999999765431100 000 11223456789999997642 4
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.+..|||||||||+||+|+ +|+|||||+|||+.++.++.+.|+++.+..+.|+ |.++|+.. +.++||+|
T Consensus 141 ---~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 141 ---HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV-VVVTHDIN-VARFGERI 215 (235)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEECSCHH-HHTTSSEE
T ss_pred ---CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEcCCHH-HHHhCCEE
Confidence 44567999999999998877 4999999999999999999999999876445555 44677776 45899999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|+++..|+.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=357.71 Aligned_cols=209 Identities=22% Similarity=0.274 Sum_probs=175.3
Q ss_pred ccccccccce--eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC-----CC-ccceE
Q 038815 170 ILPTRKKHLT--ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE-----FE-PQRVA 241 (1436)
Q Consensus 170 ~~~~~~~~~~--iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~-~~~~~ 241 (1436)
++.+++++++ +|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCE
T ss_pred eEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCE
Confidence 4445555566 999999999999999999999999999999999999998 9999999988754 22 24679
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+||+|+..++|.+||+||+.|+.+.++.. + .+.+..++++++.+||
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L 130 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDI 130 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999999999999976543211 0 0122346788999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+. .+..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+. +++.++|+..++
T Consensus 131 ~~~~~~-----~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~-tvi~vTHd~~~~ 204 (353)
T 1oxx_K 131 HHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-TLLVVSHDPADI 204 (353)
T ss_dssp GGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC-EEEEEESCHHHH
T ss_pred chHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence 887664 45579999999999998874 9999999999999999999999998664444 455578999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
..++|+|++|++|+++..|+++++.
T Consensus 205 ~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 205 FAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=339.60 Aligned_cols=210 Identities=26% Similarity=0.304 Sum_probs=173.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQ 246 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q 246 (1436)
+++.++++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++.... .++.++|++|
T Consensus 19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcC
Confidence 34555556678999999999999999999999999999999999999987 999999999875421 2356999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.+++.+||+||+.+.....+.. + .+....++.+++.+||++..+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~ 141 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIK 141 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGG
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhc
Confidence 999999999999999865433210 0 001223567899999988766
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
.. +..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||
T Consensus 142 ~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 142 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp SB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCS
T ss_pred CC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCC
Confidence 54 457999999999998877 4999999999999999999999999864 3 4555567888899999999
Q ss_pred eEEEecCCeEEEecChHHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~~ 422 (1436)
++++|++|++++.|+++++.+
T Consensus 215 ~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 215 RIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999999888754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=338.89 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=169.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478889987652 3579999999999999999999999999999999999865 3589999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038815 946 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++.+||++|++.+++.+||+||+.+...++. .+.++..+.++++++.++|.+..+..+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998765432 233444567899999999998887764 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++-...|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~ 215 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 215 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCE
Confidence 99999999999999999999999999999999999999999877999999999964 34444666
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=342.70 Aligned_cols=220 Identities=25% Similarity=0.312 Sum_probs=171.8
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||
T Consensus 11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 44555556678999999999999999999999999999999999999987 9999999998865432 3469999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
+|++.+++.+||+||+.++......+ .. .......... ...+....++++++.+||++.
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~----~~----~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~ 146 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGES----PL----NSLFYKKWIP-------------KEEEMVEKAFKILEFLKLSHL 146 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSC----HH----HHHHHCSSCC-------------CCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccC----cc----cccccccccC-------------CHHHHHHHHHHHHHHcCCchh
Confidence 99998999999999999864320000 00 0000000000 000112345678999999877
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
.+.. +..|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+. + ++|+.++|+.+++.++
T Consensus 147 ~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g-~tvi~vtHd~~~~~~~ 219 (257)
T 1g6h_A 147 YDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-G-ITFLIIEHRLDIVLNY 219 (257)
T ss_dssp TTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCCSTTGGG
T ss_pred hCCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCHHHHHHh
Confidence 6654 4579999999999988774 9999999999999999999999998653 4 4555578888899999
Q ss_pred cCeEEEecCCeEEEecChHH
Q 038815 400 FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 400 fD~vilL~~G~iv~~G~~~~ 419 (1436)
||+|++|++|++++.|++++
T Consensus 220 ~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 220 IDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CSEEEEEETTEEEEEEESHH
T ss_pred CCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999887
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=336.86 Aligned_cols=208 Identities=23% Similarity=0.301 Sum_probs=169.2
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEE
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYI 244 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv 244 (1436)
+++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|+
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEE
Confidence 34455555577999999999999999999999999999999999999987 9999999998865433 2359999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-Ccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-LDI 323 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~ 323 (1436)
+|++.+++.+||+||+.++.... .. . + +....++.+++.++ |++
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~-~~-~--------------------~-------------~~~~~~~~~l~~~~~l~~ 131 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNR-KD-K--------------------E-------------GIKRDLEWIFSLFPRLKE 131 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTC-CC-S--------------------S-------------HHHHHHHHHHHHCHHHHT
T ss_pred ecCCccCCCCcHHHHHHHhhhcC-CC-H--------------------H-------------HHHHHHHHHHHHcccHhh
Confidence 99999999999999999863111 00 0 0 01123456788884 876
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..+. .+..|||||||||+||+++ +|+|||||+|||+.++..+.+.|+++.+ .+. +|+.++|+..++.+
T Consensus 132 ~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~-tvi~vtHd~~~~~~ 204 (240)
T 1ji0_A 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGT-TILLVEQNALGALK 204 (240)
T ss_dssp TTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC-CEEEEESCHHHHHH
T ss_pred HhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEecCHHHHHH
Confidence 5554 4557999999999998877 4999999999999999999999999865 344 45557888889999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+||+|++|++|++++.|+++++.
T Consensus 205 ~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 205 VAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HCSEEEEEETTEEEEEEEHHHHH
T ss_pred hCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999988764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=340.65 Aligned_cols=202 Identities=24% Similarity=0.269 Sum_probs=168.0
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478889887653 3579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHhhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 946 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWL-RLPP---------EVDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 946 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
... ..++.+|||+|+..+++.+||+||+.+.... +... ....++..+.++++++.+||.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 421 2345799999999888999999999986532 1110 0122344567899999999998887764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+..|+
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 222 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999877999999999975 34455666
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=352.33 Aligned_cols=200 Identities=24% Similarity=0.359 Sum_probs=172.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ +++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 578888887651 12358999999999999999999999999999999999876 3589999999876
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...++.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.++|.++.+..+ ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234678999999999999999999999986654 2345566778999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 215 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADR 215 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999765 999999999964 56777888
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=351.79 Aligned_cols=198 Identities=27% Similarity=0.356 Sum_probs=170.2
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67788876652 3579999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 223577999999999999999999999975433 2233444567999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adr 203 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASR 203 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998764 999999999964 56778888
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=351.36 Aligned_cols=198 Identities=27% Similarity=0.367 Sum_probs=171.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67778876542 3579999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|+...+. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 3 2235779999999999999999999999865542 345556678999999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 203 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADR 203 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 999999999964 57778888
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=351.66 Aligned_cols=198 Identities=26% Similarity=0.340 Sum_probs=171.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67788876652 3579999999999999999999999999999999999876 45899999998653
Q ss_pred c-------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 947 Q-------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~-------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+. .+.++.+++++++++.++|.+..+..+ ..|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1235779999999999999999999999866542 345556678999999999999888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 209 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999998764 999999999974 57778888
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=334.98 Aligned_cols=198 Identities=24% Similarity=0.314 Sum_probs=165.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 378888887653 3579999999999999999999999999999999999876 3589999999876
Q ss_pred ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 038815 946 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVE-LNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lS 1020 (1436)
... . .++.+||++|+..+++.+||+||+.+..... ...++..+.++++++.++ |.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 421 1 2345999999999999999999999864211 122334456788999995 88777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|++. ++.+..|+
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~ 208 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHY 208 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999877999999999964 45566777
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=327.83 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=160.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++++|+++.+. + .+|+|||+.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578888887642 3 69999999999999999999999999999999999876 3589999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ..++.+||++|+..+++.+||+||+.+....+.. .. + .+.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567899999999999999999999987654321 11 1 3457899999999877 654 4679999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999867899999999986
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=331.70 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=164.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+|+|||+++++ |+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999987 999999999875432 2457999999999999999999
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
|+.|+.+..+. .+ ....++.+++.+||++..+.. +..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRK-----PARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCC-----GGGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCC-----hhhCC
Confidence 99986432110 00 012356789999998766644 45799
Q ss_pred HHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 038815 339 GGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 339 GGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
|||||||+||+++ +++|||||+|||+.++..+.+.|+++.+..+.|+ +.++|+.+++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE-EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999998877 4999999999999999999999999865435554 457888899999999999999999999
Q ss_pred ecChHHHH
Q 038815 414 LGPRELVL 421 (1436)
Q Consensus 414 ~G~~~~~~ 421 (1436)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=351.48 Aligned_cols=198 Identities=22% Similarity=0.324 Sum_probs=165.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78888887652 3579999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 223577999999999999999999999875433 234556667899999999999988876 3579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adr 211 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 211 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999765 999999999964 56778888
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=351.84 Aligned_cols=198 Identities=28% Similarity=0.384 Sum_probs=171.1
Q ss_pred eEEeceeeeeecccchhhcccccCceE--EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
++++|+++.+. ++. +|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67788877653 123 9999999999999999999999999999999999876 358999999987
Q ss_pred ccc------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 945 KKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 945 ~~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
... ...++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234678999999999999999999999976443 2345566678999999999999888764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adr 210 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999754 999999999974 57778888
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.06 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=167.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 578889888653 46799999999999999999999999999999999998653 479999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE 1022 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG 1022 (1436)
.. ...++.+||++|+..+.+.+||+||+.++.... ...+.++.++++++.++|.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234567999999998888899999999875433 11233456889999999998888764 579999
Q ss_pred HHHHHHHHHHHhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1023 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1023 qrkRl~ia~~L~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||+|||+|+. +|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+++ ++.+..|+
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~ 217 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADR 217 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCE
Confidence 9999999999999 99999999999999999999999999999765 579999999964 45567787
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=331.09 Aligned_cols=195 Identities=26% Similarity=0.277 Sum_probs=155.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. ++.+|+|||+.+++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67788887652 35799999999999999999999999999999999997211256899999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 038815 947 QE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-NPLRQSLVGLPGVSG-LS 1020 (1436)
Q Consensus 947 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-lS 1020 (1436)
.. . .++.++|++|++.+++.+||+|++.+.............+..+.++++++.+|| .+..+..+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 21 1 134589999999999999999999886532111112233445678899999999 57777764 45 99
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
|||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++.
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999767999999999975
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=334.59 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=163.9
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.... ...+.+|+|||+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 56788877653100 001579999999999999999999999999999999999875 35899999998764
Q ss_pred cccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 038815 947 QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN--PLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGq 1023 (1436)
...+++.+||++|++ ..++.+||+||+.|...... +.++..++++++++.+||. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 324567799999995 45677999999998643221 1112234678999999998 8777763 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.. +....|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~ 207 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDR 207 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCE
Confidence 999999999999999999999999999999999999999997779999999999863 3344666
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=345.17 Aligned_cols=194 Identities=21% Similarity=0.268 Sum_probs=166.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+ +++ +|+|||+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 4567776654 235 9999999999999999999999999999999999876 35899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|+..++|++||+||+.|....+.. +.. ++++++++.++|.++.+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 23457799999999999999999999998665421 111 56899999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||+++|++. ++..+.|+
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adr 197 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 999999999964 57778888
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=376.44 Aligned_cols=180 Identities=26% Similarity=0.389 Sum_probs=129.6
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHH---------HHHHCCCC-CC---eeE------EEEEEcCeeccccc-----
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIT------GSITISGYLKKQET----- 949 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------~~Lag~~~-~~---~~~------G~i~i~g~~~~~~~----- 949 (1436)
.|+|||+.|++|++++|+||||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 58999999999999999999999999997 44444321 11 222 33555544321100
Q ss_pred ----------------------------c-----------cceEEEeccCCCCCC-------------------------
Q 038815 950 ----------------------------F-----------TRISGYCEQNDIHSP------------------------- 965 (1436)
Q Consensus 950 ----------------------------~-----------~~~~gyv~Q~d~~~~------------------------- 965 (1436)
| .+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0 012467777665554
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 038815 966 -------LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1037 (1436)
Q Consensus 966 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p- 1037 (1436)
.+||.|++.|.... .....+.++|+.+||.... .|.+ +..|||||||||.||+||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888774321 1234567899999996532 2332 4689999999999999999876
Q ss_pred --CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1038 --SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1038 --~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ .....|+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADr 876 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADH 876 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCE
Confidence 699999999999999999999999999988999999999963 2333454
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=332.58 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD-NHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 256 (1436)
+++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.....++.++|++|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 57999999999999999999999999999999999999987 999999998875432346799999995 56778999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--ccccccccCccc
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD--ICADTLVGDEMI 334 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~ 334 (1436)
+||+.|+.... ... .+ ....++.+++.+||+ +..+.. +
T Consensus 97 ~enl~~~~~~~-~~~--------------------~~--------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD--------------------RD--------------PVPLVKKAMEFVGLDFDSFKDRV-----P 136 (266)
T ss_dssp HHHHHHTTTTT-CTT--------------------SC--------------SHHHHHHHHHHTTCCHHHHTTCC-----G
T ss_pred HHHHHHHHHhc-CCH--------------------HH--------------HHHHHHHHHHHcCcCCcccccCC-----h
Confidence 99999864321 000 00 112356789999998 766644 4
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+. + ++||.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g-~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-G-KTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 57999999999998877 49999999999999999999999998653 4 45555788888888999999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=337.35 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=160.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
..++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+|+
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~- 141 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN- 141 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-
Confidence 467999999999999999999999999999999999999998 9999999999877653 467999999998775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+|||.|+..... .+...++.... .....++. ++...+|.+|. .
T Consensus 142 ~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~------~l~~~i~~--lp~gl~t~~~~-~ 187 (306)
T 3nh6_A 142 DTIADNIRYGRVTAG-------------------------NDEVEAAAQAA------GIHDAIMA--FPEGYRTQVGE-R 187 (306)
T ss_dssp EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHH------TCHHHHHH--STTGGGCEEST-T
T ss_pred ccHHHHHHhhcccCC-------------------------HHHHHHHHHHh------CcHHHHHh--ccchhhhHhcC-C
Confidence 699999998642110 00000000000 00111222 34456788875 4
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||++ |+|||||+|||+.+...|.+.|+++.+ ++|+| .++|....+.. ||+|++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi-~itH~l~~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTI-VVAHRLSTVVN-ADQILVIKD 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEE-EECCSHHHHHT-CSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEE-EEEcChHHHHc-CCEEEEEEC
Confidence 5689999999999998874 999999999999999999999998743 45554 47888877765 999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|++++.|+++++.+
T Consensus 264 G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 264 GCIVERGRHEALLS 277 (306)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=326.64 Aligned_cols=181 Identities=22% Similarity=0.321 Sum_probs=155.3
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+|||+.+++ |++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 358999999987642 2345679999999999999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.|....+ .....++.++++++.+||.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864322 11222567889999999998877764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
++..+++.|++++++ |.|||+++|++. ++.+..|+
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~ 196 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADE 196 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999764 999999999964 45566787
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=334.65 Aligned_cols=203 Identities=21% Similarity=0.338 Sum_probs=162.9
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.+. ++.+|+|||+.+++||++||+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3588999987653 3579999999999999999999999999999999999876 358999999976
Q ss_pred cc--c---ccccceEEEeccCCCC--CCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038815 945 KK--Q---ETFTRISGYCEQNDIH--SPLVTVYESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 1016 (1436)
Q Consensus 945 ~~--~---~~~~~~~gyv~Q~d~~--~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1016 (1436)
.. . ..+++.+||++|+..+ .+.+||+||+.+....... .....++..+.++++++.+||.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 53 1 2345679999998653 3457999999885321100 00112334567889999999998887764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV--VCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|| |+++|++. ++.+..|+
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~ 232 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSK 232 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCE
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999997779999 99999974 33344555
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=327.04 Aligned_cols=197 Identities=26% Similarity=0.295 Sum_probs=161.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+. ++.+|+|||+.|++||++||+|||||||||||++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 588999987652 3579999999999999999999999999999999999742235689999999875
Q ss_pred ccc---cc-cceEEEeccCCCCCCCCCHHHHHHHhhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 038815 946 KQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAW-LR---LPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 1016 (1436)
Q Consensus 946 ~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1016 (1436)
... .. ++.+||++|++.+++.+||+|++.+... ++ .....+.++..+.++++++.+||. +..+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 12 2348999999999999999999987541 21 111223444456789999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|++.
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 249999999999999999999999999999999999999999999998767999999999975
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=333.67 Aligned_cols=214 Identities=27% Similarity=0.275 Sum_probs=167.9
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC--CCCc---cceEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD--EFEP---QRVAA 242 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~~---~~~~~ 242 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. .... ++.++
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEE
Confidence 344555556678999999999999999999999999999999999999997 999999999875 3322 35699
Q ss_pred EEcCCCCCC--CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 243 YISQHDNHI--GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 243 yv~Q~d~~~--~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
|++|++.++ +.+||+||+.++..... + .+. . + . .+....++.+++.+|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~-~-~~~----~----------~--~------------~~~~~~~~~~l~~~g 150 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSI-G-VYQ----D----------I--D------------DEIRNEAHQLLKLVG 150 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTT
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhcc-c-ccc----C----------C--c------------HHHHHHHHHHHHHcC
Confidence 999986533 35799999998632110 0 000 0 0 0 011223567899999
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAV-ISLLQPAP 394 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~i-i~~~q~~~ 394 (1436)
|++..+.. +..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+. +.|+. +.++|+.+
T Consensus 151 l~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 151 MSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp CGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred ChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 98776654 4469999999999988774 9999999999999999999999998664 55551 55788888
Q ss_pred hHHhhcCeEEEecCCeEEEecChHHH
Q 038815 395 ETYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 395 ~~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
++.++||+|++|++|++++.|+++++
T Consensus 225 ~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 225 EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999998775
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=324.01 Aligned_cols=192 Identities=23% Similarity=0.342 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+. +++.+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 67888887652 02469999999999999999999999999999999999876 3479987
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
.++.+||++|++.+++.+||+||+.+........ .....+..+.++++++.+||.+..+..+ ..|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 2356999999998888999999999864322110 0112333567899999999998877763 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~ 198 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANK 198 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 999999999974 35566777
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=364.24 Aligned_cols=179 Identities=26% Similarity=0.333 Sum_probs=133.8
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH-C----C-----CCCC---eeEE------EEEEcCeeccccc-----
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------SITISGYLKKQET----- 949 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 949 (1436)
.|+|||+.|++||++||+|+||||||||++.|. | . ...| .+.| .|.++|.+.....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999853 1 1 1122 2345 5888887642100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 038815 950 -----------------FTRISGYCEQNDIHS----------------------P------------------------- 965 (1436)
Q Consensus 950 -----------------~~~~~gyv~Q~d~~~----------------------~------------------------- 965 (1436)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357777743221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 038815 966 -------LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037 (1436)
Q Consensus 966 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p 1037 (1436)
.+||.|++.|... . . +...+.++++.+||.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3578888876421 1 1 1223568999999986 44544 3579999999999999999865
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1038 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1038 ---~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+||+|||||+|||+.+...+++.|+++++.|.|||+++|+... .+..|+
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDr 916 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADY 916 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCE
Confidence 9999999999999999999999999998889999999999643 356676
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=323.87 Aligned_cols=196 Identities=25% Similarity=0.374 Sum_probs=155.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 467999999999999999999999999999999999999987 9999999998865432 357999999998776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc-------c
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA-------D 326 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------~ 326 (1436)
.||+||+.++.. . . .. ..++.+++.+|+.+.. +
T Consensus 97 ~tv~enl~~~~~--~--~--------~~----------------------------~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANP--G--M--------SV----------------------------EKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCT--T--C--------CH----------------------------HHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCC--C--C--------CH----------------------------HHHHHHHHHhChHHHHHhCcchhh
Confidence 699999988521 0 0 00 0122344455554332 3
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+.++ +.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++. .+.|+ |.++|+...+. .||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tv-iivtH~~~~~~-~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTV-IIIAHRLSTVK-NAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEE-EEECSSGGGGT-TSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEE-EEEeCCHHHHH-hCC
Confidence 3333 34678999999999998877 499999999999999999999999873 34555 44677776664 599
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=326.66 Aligned_cols=208 Identities=23% Similarity=0.272 Sum_probs=160.4
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccEEEEcCccCCCCCc----cceEEE
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK--LDSSLKVSGRVTYNGHNMDEFEP----QRVAAY 243 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~y 243 (1436)
++..+++++++|+|||++|++||+++|+||||||||||||+|+|. ++|+ +|+|.++|.++..... ++.++|
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~ 84 (250)
T 2d2e_A 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFL 84 (250)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred eEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEE
Confidence 344455556799999999999999999999999999999999998 6666 9999999998865433 234889
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhh-ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC-
Q 038815 244 ISQHDNHIGEMTVRETLAFSARC-QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL- 321 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL- 321 (1436)
++|++.+++.+||+||+.++... .+... .. .+....++.+++.+||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~gl~ 132 (250)
T 2d2e_A 85 AFQYPVEVPGVTIANFLRLALQAKLGREV--------GV------------------------AEFWTKVKKALELLDWD 132 (250)
T ss_dssp CCCCCC-CCSCBHHHHHHHHHHHHHTSCC--------CH------------------------HHHHHHHHHHHHHHTCC
T ss_pred eccCCccccCCCHHHHHHHHHHhhccccC--------CH------------------------HHHHHHHHHHHHHcCCC
Confidence 99999999999999999986421 11000 00 0112235678999999
Q ss_pred cccccccccCcccCC-CCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 322 DICADTLVGDEMIRG-ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rg-LSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
.+..+.. +.. |||||||||+||++++ ++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..+
T Consensus 133 ~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 133 ESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRI 205 (250)
T ss_dssp GGGGGSB-----TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGG
T ss_pred hhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 4655544 445 9999999999988774 999999999999999999999998743 34555567888888
Q ss_pred HHhh-cCeEEEecCCeEEEecChHH
Q 038815 396 TYDL-FDDIILLSDGLIVYLGPREL 419 (1436)
Q Consensus 396 ~~~l-fD~vilL~~G~iv~~G~~~~ 419 (1436)
+..+ +|+|++|++|++++.|+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 206 LNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp GGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHhcCCEEEEEECCEEEEEeCHHH
Confidence 8888 59999999999999999873
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.96 Aligned_cols=197 Identities=27% Similarity=0.416 Sum_probs=160.6
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46889999887620 13569999999999999999999999999999999999876 358999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL-------VGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.|.. + ..+ .+.++++++.+++.+..+.. ++..
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999988876 59999998752 1 112 23467788888887765543 2322
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +..|+
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~ 212 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADR 212 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 46899999999999999999999999999999999999999999999985 59999999999863 2 34666
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=332.03 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=161.4
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
...+.++|+++.++ +.+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34689999998764 13569999999999999999999999999999999999876 45899999998
Q ss_pred eccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 038815 944 LKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGL 1013 (1436)
Q Consensus 944 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~ 1013 (1436)
+... ..+++.+|||+|++.+++ .||+||+.|+... ... +.++++++.+++.+.. ++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 7653 345678999999998885 5999999886321 122 2356677777775533 455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. ..+|||||||||+|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++. + ...|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~ 257 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQ 257 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCE
Confidence 4 358999999999999999999999999999999999999999999999864 7999999999764 3 34777
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=322.91 Aligned_cols=178 Identities=20% Similarity=0.316 Sum_probs=153.7
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+|+|||+.+++||+++|+|||||||||||++|+|... +. |+|.++|.+... ..+++.+||++|+..+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 7999999999999999999999999999999999876 35 999999987532 23456799999999888899999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC-------cceec
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1043 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~-------il~lD 1043 (1436)
||+.+... +. .+ .+.++++++.+||.+..+.. +..|||||||||+||++|+.+|+ +|+||
T Consensus 92 e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 11 11 34578999999999887765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||+.++..+++.|++++++|+|||+++|++. .+.+..|+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~ 202 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHR 202 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999777999999999964 34566777
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.37 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=162.2
Q ss_pred ccccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 170 ILPTRKK-HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 170 ~~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
++..+++ ++++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++
T Consensus 9 ~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~ 75 (253)
T 2nq2_C 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFF 75 (253)
T ss_dssp EEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCC
T ss_pred eEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCC
Confidence 3444444 567999999999999999999999999999999999999987 999982 34699999999
Q ss_pred CCCCCCCHHHHHHhhhhhc-cCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 249 NHIGEMTVRETLAFSARCQ-GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.+++.+||+||+.++.... +.... + . .+....++.+++.+||++..+.
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~ 124 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKR 124 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcC
Confidence 9999999999999864321 10000 0 0 0012235678999999877665
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. +..|||||||||+||++++ |+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+.+++.++||+
T Consensus 125 ~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~ 198 (253)
T 2nq2_C 125 E-----FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANK 198 (253)
T ss_dssp B-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSE
T ss_pred C-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 4 4579999999999988774 99999999999999999999999986532 44556678899999999999
Q ss_pred EEEecCCeEEEecChHHH
Q 038815 403 IILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~ 420 (1436)
|++|++|+ ++.|+++++
T Consensus 199 v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 199 TLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp EEEEETTE-EEEEEHHHH
T ss_pred EEEEeCCe-EecCCHHHH
Confidence 99999999 999988776
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=325.37 Aligned_cols=203 Identities=21% Similarity=0.359 Sum_probs=158.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|||+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 67999999999999999999999999999999999999987 9999999998755432 356999999998877 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc--CCcccccccccCc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL--GLDICADTLVGDE 332 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~ 332 (1436)
||+|||.++.... .. ..+.. ++ ......+.+++.+ ||+...+ +
T Consensus 108 tv~enl~~~~~~~--~~----~~~~~------------------~~------~~~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT----MEEIT------------------AV------AMESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC----HHHHH------------------HH------HHHHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch----HHHHH------------------HH------HHHHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999863210 00 00000 00 0011134567777 6654443 4
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+.. +++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45689999999999988774 99999999999999999999999864322 445555778877765 599999999
Q ss_pred CCeEEEecChHHHH
Q 038815 408 DGLIVYLGPRELVL 421 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~ 421 (1436)
+|++++.|+++++.
T Consensus 231 ~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 231 EGSVCEQGTHLQLM 244 (271)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.00 Aligned_cols=199 Identities=22% Similarity=0.271 Sum_probs=158.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++.+... +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 48899998876310 11458999999999999999999999999999999999876 3589999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEIMELV--ELNPLRQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++.+++ .||+||+.|..... ...++ ....++++++.+ ||.+..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11011 122356677777 676665554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++. + +..|+
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~ 225 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHH 225 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSE
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCE
Confidence 357999999999999999999999999999999999999999999999864 48999999999753 2 34676
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.12 Aligned_cols=225 Identities=22% Similarity=0.269 Sum_probs=170.6
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEEcCccCCCCCc----cceE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFEP----QRVA 241 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~ 241 (1436)
++++..+++++++|+|||++|++||+++|+||||||||||||+|+|.. +|+ +|+|.++|.++..... ++.+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCE
Confidence 344555555678999999999999999999999999999999999984 455 9999999998765432 2348
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
+|++|++.+++.+||.|++.+...... ... +. +..+ ..+....++++++.+||
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~-------------~~~--~~-~~~~-----------~~~~~~~~~~~l~~~gl 152 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVR-------------SYR--GQ-ETLD-----------RFDFQDLMEEKIALLKM 152 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHH-------------HGG--GC-CCCC-----------HHHHHHHHHHHHHHTTC
T ss_pred EEEccCccccccccHHHHHHHHHHhhh-------------hhh--cc-ccCC-----------HHHHHHHHHHHHHHcCC
Confidence 999999999999999999987532100 000 00 0000 00112346678999999
Q ss_pred c-ccccccccCcccC-CCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 038815 322 D-ICADTLVGDEMIR-GISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP 394 (1436)
Q Consensus 322 ~-~~~~t~vg~~~~r-gLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 394 (1436)
+ +..+. .+. .|||||||||+||+|++ |+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..
T Consensus 153 ~~~~~~~-----~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~ 225 (267)
T 2zu0_C 153 PEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQR 225 (267)
T ss_dssp CTTTTTS-----BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGG
T ss_pred ChhHhcC-----CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHH
Confidence 6 34443 343 49999999999988774 999999999999999999999998643 2455666788888
Q ss_pred hHHhh-cCeEEEecCCeEEEecChHHHHHHHHhcCCC
Q 038815 395 ETYDL-FDDIILLSDGLIVYLGPRELVLDFFESMGFK 430 (1436)
Q Consensus 395 ~~~~l-fD~vilL~~G~iv~~G~~~~~~~~F~~lGf~ 430 (1436)
++..+ +|+|++|++|++++.|+++++.. .+..||.
T Consensus 226 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 226 ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 87776 89999999999999999987653 4445443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=362.13 Aligned_cols=90 Identities=24% Similarity=0.332 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhhC---CCcceecCCCCCCCHHHHHHHHHHHHHHHHc
Q 038815 992 MFIEEIMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067 (1436)
Q Consensus 992 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~---p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~ 1067 (1436)
+.+.++++.+||... .+.. +..|||||||||.||++|+.+ |+||+|||||+|||..+...|++.|+++++.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 467899999999874 3443 467999999999999999996 6999999999999999999999999999988
Q ss_pred CCEEEEEecCCCHHHHHHhhh
Q 038815 1068 GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1068 g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|.|||+++|++. .+ +..|+
T Consensus 783 G~tVIvisHdl~-~i-~~aDr 801 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDW 801 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSE
T ss_pred CCEEEEEcCCHH-HH-HhCCE
Confidence 999999999964 23 56666
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=322.45 Aligned_cols=198 Identities=23% Similarity=0.317 Sum_probs=159.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIG 252 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 252 (1436)
.++++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 3467999999999999999999999999999999999999987 999999999876533 2457999999998777
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc-----
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT----- 327 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t----- 327 (1436)
.||+||+.|+.... . + ...++.+++.+|+.+..+.
T Consensus 90 -~tv~enl~~~~~~~---~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 90 -GTIRENLTYGLEGD---Y---------------------T---------------DEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp -EEHHHHTTSCTTSC---S---------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred -ccHHHHHhhhccCC---C---------------------C---------------HHHHHHHHHHhChHHHHHhCccch
Confidence 59999998852100 0 0 0113456777788765443
Q ss_pred --cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 328 --LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 328 --~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
.++ +.+..|||||||||+||++++ ++|||||+|||+.++..+.+.|+++. .+.|+ +.++|+...+ ..+
T Consensus 130 ~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tv-i~vtH~~~~~-~~~ 204 (243)
T 1mv5_A 130 NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTT-LVIAHRLSTI-VDA 204 (243)
T ss_dssp GCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEE-EEECCSHHHH-HHC
T ss_pred hchhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEE-EEEeCChHHH-HhC
Confidence 233 346789999999999988774 99999999999999999999999875 34455 4467777666 469
Q ss_pred CeEEEecCCeEEEecChHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+|++|++|++++.|+++++.
T Consensus 205 d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 205 DKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp SEEEEEETTEECCCSCHHHHH
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988765
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=318.85 Aligned_cols=189 Identities=22% Similarity=0.193 Sum_probs=158.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEE-EEcCCCCCCCCCCH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA-YISQHDNHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 256 (1436)
+++|+|+|++++ |++++|+||||||||||||+|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 679999999999 9999999999999999999999999 97 999999998864322245799 99999876 8999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccccCcccC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~r 335 (1436)
+||+.++..... . ....++.+++.+||+ +..+.. +.
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRK-----LY 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSB-----GG
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCC-----hh
Confidence 999998643210 0 011246688999998 766544 45
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC-eEEEecCC
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD-DIILLSDG 409 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD-~vilL~~G 409 (1436)
.|||||||||+||+++ +++|||||+|||+.++.++.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 7999999999998877 499999999999999999999998742 2 55557888888899999 99999999
Q ss_pred eEEEecChHHHH
Q 038815 410 LIVYLGPRELVL 421 (1436)
Q Consensus 410 ~iv~~G~~~~~~ 421 (1436)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=314.33 Aligned_cols=192 Identities=26% Similarity=0.322 Sum_probs=161.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 255 (1436)
++|+|+|++|++||+++|+||||||||||||+|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 589999999999999999999999999999999999987 3 999999998754432 356999999998899999
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
|+||+.++.. ... . ...++.+++.+||++..+.. +.
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~-----~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRS-----TN 125 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSB-----GG
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCC-----hh
Confidence 9999988521 000 0 11246688999998776644 45
Q ss_pred CCCHHHHHHHhhh-----hhh-------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 336 GISGGQKRRVTTG-----PAL-------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 336 gLSGGqrkRvsia-----~a~-------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.|||||||||+|| .|. +|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++.+++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 7999999999995 467 89999999999999999999999998653 445556789999999999999
Q ss_pred EEecCCeEEEecChHHH
Q 038815 404 ILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~ 420 (1436)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=321.04 Aligned_cols=196 Identities=27% Similarity=0.390 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.++ +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56778877652 12458999999999999999999999999999999999865 34799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV-------GLPGV 1016 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-------g~~~~ 1016 (1436)
. ..+++.+|||+|++.+++ .||+||+.|... + ... .+.++++++.+++.+..+... +.. +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 2 335677999999998877 599999987521 1 112 234678899999988765542 222 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ +..|+.
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v 207 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKI 207 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEE
Confidence 6899999999999999999999999999999999999999999999987 5999999999975 23 457873
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=315.71 Aligned_cols=194 Identities=24% Similarity=0.337 Sum_probs=153.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|||++|++|++++|+||||||||||||+|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998754432 357999999998876 6
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.|+.. . . .+. .+...++.+| +++..+|
T Consensus 108 tv~enl~~~~~-~---~--------~~~----------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D---A--------TDE----------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T---C--------CHH----------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C---C--------CHH----------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0 0 000 0112233333 4445566
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++ +.+..|||||||||+||++++ ++|||||+|||+.++..+.+.|+++. .+.| |+.++|+...+ ..+|+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~t-viivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRT-LIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCE-EEEEcCCHHHH-HhCCE
Confidence 665 346789999999999988774 99999999999999999999999874 2444 45567776665 46999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=317.17 Aligned_cols=196 Identities=25% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.+... ..+.+|+|||+.|++||++||+|||||||||||++|+|... + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47889998876310 11358999999999999999999999999999999999865 3 79999999876
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.+.++++.+++.+. .++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 1121 235667777776543 33334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +..|+
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~ 222 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAES 222 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCE
Confidence 468999999999999999999999999999999999999999999999865 8999999999863 2 34666
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=337.19 Aligned_cols=203 Identities=23% Similarity=0.233 Sum_probs=160.7
Q ss_pred ccccccc--ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEE
Q 038815 169 QILPTRK--KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAY 243 (1436)
Q Consensus 169 ~~~~~~~--~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~y 243 (1436)
+++.+++ ....+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++|
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEE
Confidence 3445555 45679999999999999999999999999999999999986 5 8999999999876654 367999
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
|+|++.+|+ +||+||+.+.... . ...++.+++.+||.+
T Consensus 99 v~Q~~~lf~-~tv~enl~~~~~~-------------~----------------------------~~~v~~~l~~~~L~~ 136 (390)
T 3gd7_A 99 IPQKVFIFS-GTFRKNLDPNAAH-------------S----------------------------DQEIWKVADEVGLRS 136 (390)
T ss_dssp ESCCCCCCS-EEHHHHHCTTCCS-------------C----------------------------HHHHHHHHHHTTCHH
T ss_pred EcCCcccCc-cCHHHHhhhcccc-------------C----------------------------HHHHHHHHHHhCCHH
Confidence 999998887 6999999742100 0 012345677888876
Q ss_pred cccccccC------cccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 038815 324 CADTLVGD------EMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP 392 (1436)
Q Consensus 324 ~~~t~vg~------~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 392 (1436)
..+..... +....|||||||||+||||++ |||||||+|||+.++.++.+.|++.. .+ ++++.++|+
T Consensus 137 ~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd 213 (390)
T 3gd7_A 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEAR 213 (390)
T ss_dssp HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSS
T ss_pred HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcC
Confidence 54433221 223349999999999998875 99999999999999999999998742 24 455556777
Q ss_pred hhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 393 APETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 393 ~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
. +....+|+|++|++|+++..|+++++.
T Consensus 214 ~-e~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 214 I-EAMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp S-GGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred H-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5 556779999999999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=312.82 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=156.3
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+.++|+++.+... ...+.+|+|+|+.++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 4677887765310 011569999999999 9999999999999999999999986 4 4899999998754
Q ss_pred cccccceEE-EeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 038815 947 QETFTRISG-YCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~~~~~~~~g-yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGqr 1024 (1436)
....++.+| |++|++.+ .+||+||+.+...++ ... .+.++++++.++|. +..+..+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211256799 99999877 799999999876443 111 34578999999998 8777663 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh-h
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD-E 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD-~ 1088 (1436)
|||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ |||+++|++. ++.+..| +
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~ 195 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYK 195 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCce
Confidence 999999999999999999999999999999999999998743 9999999974 3445667 6
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=308.29 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=153.6
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
+++..++++ ++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++. ..++.++|++|++
T Consensus 14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSC
T ss_pred EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCC
Confidence 344555555 8999999999999999999999999999999999999987 999999998875 2456799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTL 328 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~ 328 (1436)
.+++.+||+||+.++....+. . .+ ...++.+++.+||++. +
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~-~--------------------~~---------------~~~~~~~l~~~gl~~~-~-- 128 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGV-K--------------------VN---------------KNEIMDALESVEVLDL-K-- 128 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTC-C--------------------CC---------------HHHHHHHHHHTTCCCT-T--
T ss_pred cCCCCCCHHHHHHHHHHhcCC-c--------------------hH---------------HHHHHHHHHHcCCCcC-C--
Confidence 999999999999986543211 0 00 1124567899999765 4
Q ss_pred ccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 329 VGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 329 vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.+..|||||||||+||+++ +++|||||+|||+.++..+.+.|+++.+. +.|+ +.++|+..++..++|+|
T Consensus 129 ---~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~ti-iivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 129 ---KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIV-IISSREELSYCDVNENL 203 (214)
T ss_dssp ---SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEE-EEEESSCCTTSSEEEEG
T ss_pred ---CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEE-EEEeCCHHHHHHhCCEE
Confidence 44567999999999998877 49999999999999999999999998653 4454 45677788888888887
Q ss_pred EEecCCeE
Q 038815 404 ILLSDGLI 411 (1436)
Q Consensus 404 ilL~~G~i 411 (1436)
+++ .|+|
T Consensus 204 ~~~-~~~~ 210 (214)
T 1sgw_A 204 HKY-STKI 210 (214)
T ss_dssp GGG-BC--
T ss_pred EEe-CCcc
Confidence 644 4444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-32 Score=303.75 Aligned_cols=192 Identities=23% Similarity=0.330 Sum_probs=144.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
++++|+|||++|++||+++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 467999999999999999999999999999999999999987 99999998 28999999988875 99
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.|+.... +. +.+ ...+.. ..+..++.+ +...+|.++ +.+..
T Consensus 86 ~enl~~~~~~~----------~~-~~~------------~~~~~~---------~l~~~~~~~--~~~~~~~~~-~~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD----------EY-RYR------------SVIKAC---------QLEEDISKF--AEKDNIVLG-EGGIT 130 (229)
T ss_dssp HHHHHTTSCCC----------HH-HHH------------HHHHHT---------TCHHHHTTS--TTGGGSCBC-TTCTT
T ss_pred HHHhhccCCcC----------hH-HHH------------HHHHHh---------CcHHHHHhC--ccccccccc-CCCCc
Confidence 99999853110 00 000 000000 001112222 222344454 34678
Q ss_pred CCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSI-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 337 LSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
|||||||||+||++++ ++|||||+|||+.++..+.+.+ ++.. .+. +|+.++|+..++. .+|+|++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~-tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCC-EEEEEcCChHHHH-hCCEEEEEECCE
Confidence 9999999999988774 9999999999999999999874 4432 244 4555677776664 599999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=308.60 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=145.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
++++|+|||++|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ++||+|++. ++.+||
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~----------i~~v~Q~~~-~~~~tv 82 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKGS----------VAYVPQQAW-IQNDSL 82 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECSC----------EEEECSSCC-CCSEEH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCE----------EEEEcCCCc-CCCcCH
Confidence 457999999999999999999999999999999999999987 999999982 899999975 568999
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc-ccccccccCcccC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD-ICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~r 335 (1436)
+||+.++.... . + . .+...+ ...+++.+++. ...+|.++ +.+.
T Consensus 83 ~enl~~~~~~~---~------~--~------------~~~~~~------------~~~l~~~~~~~~~~~~~~~~-~~~~ 126 (237)
T 2cbz_A 83 RENILFGCQLE---E------P--Y------------YRSVIQ------------ACALLPDLEILPSGDRTEIG-EKGV 126 (237)
T ss_dssp HHHHHTTSCCC---T------T--H------------HHHHHH------------HTTCHHHHTTSTTGGGSEES-TTSB
T ss_pred HHHhhCccccC---H------H--H------------HHHHHH------------HHhhHHHHHhcccccccccc-CCCC
Confidence 99999853210 0 0 0 000000 00012233332 12334443 4577
Q ss_pred CCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.|||||||||+||++++ ++|||||+|||+.++..+++.+++......+++|+.++|+...+ ..||+|++|++|+
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~ 205 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGK 205 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCE
Confidence 89999999999988774 99999999999999999999985211111234455567776665 5799999999999
Q ss_pred EEEecChHHHH
Q 038815 411 IVYLGPRELVL 421 (1436)
Q Consensus 411 iv~~G~~~~~~ 421 (1436)
+++.|+++++.
T Consensus 206 i~~~g~~~~~~ 216 (237)
T 2cbz_A 206 ISEMGSYQELL 216 (237)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHh
Confidence 99999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-32 Score=301.91 Aligned_cols=185 Identities=21% Similarity=0.294 Sum_probs=145.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++. +++.+|+|||+++++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788888876531 12468999999999999999999999999999999999876 3589999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCC
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~ 1018 (1436)
.+||++|++.+++. ||+||+.|... .... .++++++.+++.+.. ++.++.. ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999988875 99999987521 1111 133455555554332 2233332 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++. ++++. .|+|||+++|++.. + +..|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~ 198 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK 198 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCE
Confidence 999999999999999999999999999999999999999997 45554 48999999999743 3 45777
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=326.71 Aligned_cols=196 Identities=22% Similarity=0.289 Sum_probs=161.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.+.. +++.+|+|||+.|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999887631 23569999999999999999999999999999999999864 57999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL------PG 1015 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~ 1015 (1436)
... ..+++.+|||+|+..+++ .||+||+.+.. ... ++.++++++.++|.+..+..... +.
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 643 234678999999999887 69999996421 111 24578899999998877665321 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++. .|.|||+++|+.. .....|+
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDr 222 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQ 222 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCE
Confidence 23499999999999999999999999999999999999999999999864 4899999999974 3455787
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=301.93 Aligned_cols=184 Identities=22% Similarity=0.376 Sum_probs=143.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++.+.. +++.+|+|||+.|++||++||+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678888876531 12468999999999999999999999999999999999875 5689999998
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC------cc-cccccCCCCCCCC
Q 038815 947 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN------PL-RQSLVGLPGVSGL 1019 (1436)
Q Consensus 947 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~------~~-~~~~vg~~~~~~l 1019 (1436)
.+|||+|++.+ +.+||+||+.+.... ..+ + .+++++.+++. +. .++.++.. +..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999875321 111 1 22333444332 21 12223332 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK---NTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + +.+|+
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~ 197 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDV 197 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999995 343 48999999999874 3 45777
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=339.73 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=159.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
..++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 430 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS- 430 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-
Confidence 457999999999999999999999999999999999999998 9999999999876654 467999999998886
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+||+.++.... +.+...++....+ .+..+ -.+++..||.+|+ .
T Consensus 431 ~tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 431 GTIKENLKWGREDA-------------------------TDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVER-G 476 (587)
T ss_dssp EEHHHHHTTTCSSC-------------------------CHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECS-S
T ss_pred ccHHHHHhccCCCC-------------------------CHHHHHHHHHHhC------cHHHH--HhcccchhhHhcC-C
Confidence 49999998853110 0000111100000 01112 2356677888875 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||++||+.+..++.+.++++. .++|+| .++|..+.+ ..+|+|++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi-~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTF-IITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEE-EEESCHHHH-TTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEE-EEecChHHH-HhCCEEEEEEC
Confidence 668999999999999877 499999999999999999999999863 345554 467776665 58999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=338.89 Aligned_cols=197 Identities=24% Similarity=0.393 Sum_probs=158.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 57999999999999999999999999999999999999997 9999999999876543 457999999998887 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.++.. . .. +.+. ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~---------------------~~~~---------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EY---------------------SREQ---------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CC---------------------CHHH---------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CC---------------------CHHH---------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00 0000 112222223 3445678
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+|+ ....|||||||||+||||+ +++|||||+|||+.++.++.+.++++.+ ++|+|+ ++|....+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-EeccHHHH-HhCCE
Confidence 8885 4668999999999998877 4999999999999999999999998743 555555 66666555 57999
Q ss_pred EEEecCCeEEEecChHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~ 422 (1436)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=337.61 Aligned_cols=204 Identities=24% Similarity=0.374 Sum_probs=159.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 357999999999999999999999999999999999999998 9999999999876543 4679999999988865
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
||+||+.++.... +.+...++....+ .+.. .-.+++..||.+|+ .
T Consensus 430 -tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 430 -TVKENILLGRPTA-------------------------TDEEVVEAAKMAN------AHDF--IMNLPQGYDTEVGE-R 474 (578)
T ss_dssp -BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSTTGGGCBCCG-G
T ss_pred -cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------cHHH--HHhCcchhhhhhcc-C
Confidence 9999999853100 0001111110000 0111 12356677899985 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||+|||+.+...+.+.++++. .++|+++ ++|..+.+ +.+|+|++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEEC
Confidence 568999999999998877 499999999999999999999998863 3455554 67777665 56999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=338.41 Aligned_cols=196 Identities=24% Similarity=0.384 Sum_probs=157.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
+++|+|+|+++++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 57999999999999999999999999999999999999998 9999999998865433 467999999998887 5
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC-------Ccccccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG-------LDICADT 327 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t 327 (1436)
||+||+.++.. . . .++ + .+++.++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~--------~~~-------------~---------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--E--------YTR-------------E---------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--C--------CCH-------------H---------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998531 0 0 000 0 0122233333 3445678
Q ss_pred cccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.+|+. ...|||||||||+||||+ +++|||||+|||+.++.++.+.++++. .++|+|+ ++|....+ +.||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 88854 568999999999998877 499999999999999999999999864 2555555 56666555 57999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=336.78 Aligned_cols=198 Identities=25% Similarity=0.313 Sum_probs=162.8
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 35899999887641 11458999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 345678999999998887 499999988531 1 122 23467888888886543 4556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||+|+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. + +..|+
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~ 547 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADE 547 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSE
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCE
Confidence 468999999999999999999999999999999999999999999999865 9999999999863 2 45666
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=335.97 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=159.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999998 9999999999876544 467999999998775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+||+.++.... .. .+ ..++....+ .+..++ .+++..||.+|+ .
T Consensus 443 ~tv~eni~~~~~~~---~~----~~------------------~~~~~~~~~------~~~~~~--~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 443 TTVKENLKYGNPGA---TD----EE------------------IKEAAKLTH------SDHFIK--HLPEGYETVLTD-N 488 (598)
T ss_dssp SBHHHHHHSSSTTC---CT----TH------------------HHHHTTTTT------CHHHHH--TSTTGGGCBCHH-H
T ss_pred ccHHHHHhcCCCCC---CH----HH------------------HHHHHHHhC------CHHHHH--hccccccchhcC-C
Confidence 59999999852100 00 00 011100000 011122 355667888885 4
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||+ +++|||||++||+.+..++.+.++++. .++|+|+ ++|....+. .+|+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~~-~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTIK-NADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHHH-HCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHHH-cCCEEEEEEC
Confidence 568999999999999877 499999999999999999999999874 3555555 667666654 5999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+++++|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=337.17 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=163.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 36899999987641 12469999999999999999999999999999999999866 357999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++.. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999988531 1 122 23467888888887654 4455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++.+ |+|+|+++|+++. .+..|+
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~ 547 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADE 547 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence 368999999999999999999999999999999999999999999999865 9999999999863 356787
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=335.85 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=160.3
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46899999987642 13468999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++. ||+||+.++. + ..+. +.+.++++..++.+. .|+.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 653 3456789999999988875 9999998752 1 1222 235566666666443 35556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. + +..|+
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~ 544 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADK 544 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSE
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCE
Confidence 35899999999999999999999999999999999999999999999885 48999999999874 2 34666
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=338.38 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=159.4
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++. +.+.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 46899999987742 23468999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++. ||+||+.++. + ..+.+ .+.+.++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----E-DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----S-SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----C-CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 653 3456789999999988864 9999997752 1 12222 2344555555543 345566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|+|+++|+++. ....|+
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~ 546 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADK 546 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSE
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCE
Confidence 35899999999999999999999999999999999999999999999974 58999999999864 346777
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=334.77 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=159.0
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++++|+++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4689999998764 12458999999999999999999999999999999999876 458999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-------QSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 1014 (1436)
... ..+++.+|||+|++.+++ .||+||+.++. + ..+.+ .++++++..++.+.. |+.+|..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 653 345678999999998886 59999998752 1 11221 245556656554433 3444432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..+||||||||++|||||+.+|+||+|||||||||+.++..+++.|+++. +|+|+|+++|+++. + +..|+.
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i 559 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLI 559 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEE
Confidence 25799999999999999999999999999999999999999999999985 59999999999985 3 458883
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=297.24 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=140.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
+++|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 46999999999999999999999999999999999999987 99999998 28999999988774 999
Q ss_pred HHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 258 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
||+. +... . +. +. +...+.. ..+..++.+ ....++.++ +.+..|
T Consensus 117 enl~-~~~~-------~---~~-~~------------~~~~~~~---------~l~~~l~~~--~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY-------D---EY-RY------------RSVIKAC---------QLEEDISKF--AEKDNIVLG-EGGITL 160 (290)
T ss_dssp HHHH-TTCC-------C---HH-HH------------HHHHHHT---------TCHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc-------c---hH-HH------------HHHHHHh---------ChHHHHHhc--cccccchhc-CccCcC
Confidence 9997 3210 0 00 00 0000000 001122222 222344454 346689
Q ss_pred CHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 338 SGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSI-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 338 SGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
||||||||+||++++ ++|||||+|||+.++..+.+.+ +++. .+. +|+.++|+...+ ..||+|++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~-tviivtHd~~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCC-EEEEEecCHHHH-HcCCEEEEEECCeE
Confidence 999999999988774 9999999999999999999864 4432 244 555577777666 46999999999999
Q ss_pred EEecChHHHH
Q 038815 412 VYLGPRELVL 421 (1436)
Q Consensus 412 v~~G~~~~~~ 421 (1436)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=351.64 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=163.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|||++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||.|+.+... |+.++||||++.+|.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-
Confidence 346999999999999999999999999999999999999998 9999999999988765 578999999998776
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||||||.|+.... +.+.++..++....+ .+.. .-.|++..||.||+.
T Consensus 1167 gTIreNI~~gld~~-----------------------~~sd~ei~~Al~~a~------l~~~--I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPS-----------------------SVTMAQVEEAARLAN------IHNF--IAELPEGFETRVGDR- 1214 (1321)
T ss_dssp EEHHHHHSSSSCTT-----------------------TSCHHHHHHHHHHTT------CHHH--HHTSTTTTCSEETTT-
T ss_pred ccHHHHHhccCCCC-----------------------CCCHHHHHHHHHHhC------ChHH--HHcCcCCCCCEecCC-
Confidence 49999998864210 011112222211110 0111 124778889999975
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...||||||||++||||++ |+||||||+||+.|...|.+.|++.. .++|+|+ +.|-. .+...||+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAHRL-sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAHRL-NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECSSS-STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-eccCH-HHHHhCCEEEEEEC
Confidence 4579999999999999874 99999999999999999999998742 3455554 66644 45667999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-30 Score=293.96 Aligned_cols=181 Identities=22% Similarity=0.322 Sum_probs=134.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+.++|+++. .+.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 4677777653 1358999999999999999999999999999999999875 5689999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCC
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQ-------SLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~~ 1018 (1436)
.+||++|+..+++. ||+||+. .. + ... ..++++++.+++.+..+ +.++.. +..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 38999999988875 9999997 31 1 111 12344556666644322 223322 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.+ +++. .|+|||+++|++.. + +..|+.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i 228 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKI 228 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEE
Confidence 9999999999999999999999999999999999999999974 4554 48999999999742 3 457873
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=336.23 Aligned_cols=205 Identities=21% Similarity=0.345 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 254 (1436)
.++|+|||++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 46999999999999999999999999999999999999998 9999999999876654 46799999999766 57
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
||+|||.++...... +.+...++... ...+.. .-.+++..||.||+. .
T Consensus 1122 ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~------~~~~~~--i~~l~~gldt~vge~-G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV-----------------------SYEEIVRAAKE------ANIHQF--IDSLPDKYNTRVGDK-G 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC-----------------------CHHHHHHHHHH------HTCHHH--HSSTTTGGGCBCSTT-S
T ss_pred cHHHHHhccCCCCCC-----------------------CHHHHHHHHHH------hCcHHH--HHhCccccccccCCC-C
Confidence 999999885321100 00011111000 001111 124677889999964 5
Q ss_pred CCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 038815 335 RGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 409 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G 409 (1436)
..|||||||||+|||++ +|+|||||+|||+.+...+.+.|++.. .+ .+++.++|..+.+ ..||+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~-~tvi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EG-RTCIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SS-SCEEEECSCTTGG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CC-CEEEEEecCHHHH-HcCCEEEEEECC
Confidence 68999999999999877 599999999999999999999998742 34 4455577887776 559999999999
Q ss_pred eEEEecChHHHHH
Q 038815 410 LIVYLGPRELVLD 422 (1436)
Q Consensus 410 ~iv~~G~~~~~~~ 422 (1436)
+++++|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=299.51 Aligned_cols=186 Identities=26% Similarity=0.293 Sum_probs=153.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++ +.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 588888899999999999999999999999999999987 8999762 358999999877788999998
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRN-----VEDLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCC-----hhhCCH
Confidence 86521000 00 012346678999998766654 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||+.++.++.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999998877 4999999999999999999999999865444 4555688999999999999999986 8889
Q ss_pred EecChHHHHH
Q 038815 413 YLGPRELVLD 422 (1436)
Q Consensus 413 ~~G~~~~~~~ 422 (1436)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=295.85 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=152.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 578888889999999999999999999999999999987 899975 1358999999877788999998
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRE-----VNELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCC-----hhhCCH
Confidence 86421000 00 011245678889997666544 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||..++.++.+.|+++++..+. +|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~-tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK-TALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999998876 59999999999999999999999998654444 455588999999999999999986 8899
Q ss_pred EecChHHHHH
Q 038815 413 YLGPRELVLD 422 (1436)
Q Consensus 413 ~~G~~~~~~~ 422 (1436)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=289.27 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=150.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 567778889999999999999999999999999999997 999997764 47999998776778999999
Q ss_pred HHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCH
Q 038815 260 LAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISG 339 (1436)
Q Consensus 260 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSG 339 (1436)
+.+..... . .. ....++.+++.+||.+..+.. +..|||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESN-----VNDLSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSB-----GGGCCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCC-----hhhCCH
Confidence 98631100 0 00 001245678888998766644 457999
Q ss_pred HHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC--CeEE
Q 038815 340 GQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GLIV 412 (1436)
Q Consensus 340 GqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~--G~iv 412 (1436)
||||||+||+++ +|+|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999998877 499999999999999999999999987643 45556689999999999999999986 6666
Q ss_pred EecChHHHH
Q 038815 413 YLGPRELVL 421 (1436)
Q Consensus 413 ~~G~~~~~~ 421 (1436)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777665543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=287.65 Aligned_cols=188 Identities=24% Similarity=0.233 Sum_probs=151.7
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCC
Q 038815 178 LTILKDVSGIIRPG-----SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIG 252 (1436)
Q Consensus 178 ~~iL~~vs~~i~~G-----e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 252 (1436)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35799999999999 789999999999999999999999987 7752 1 1345899999876666
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
..||+|++.... ++. . . .....+.+++.+||.+.++.
T Consensus 427 ~~tv~e~~~~~~--~~~---~------------------~---------------~~~~~~~~l~~l~l~~~~~~----- 463 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQ---F------------------L---------------NPQFQTDVVKPLRIDDIIDQ----- 463 (608)
T ss_dssp CSBHHHHHHHHC--SST---T------------------T---------------SHHHHHHTHHHHTSTTTSSS-----
T ss_pred CccHHHHHHHHh--hcc---c------------------c---------------cHHHHHHHHHHcCChhhhcC-----
Confidence 789999875321 100 0 0 00123567889999876664
Q ss_pred ccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+..|||||||||+||+++ +|+|||||+|||+.++.++.+.|+++.+..+. +|+.++|+.+++..++|+|++|+
T Consensus 464 ~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~-tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK-TAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHCSEEEECE
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhCCEEEEEe
Confidence 4557999999999998876 59999999999999999999999998654444 45558999999999999999999
Q ss_pred C--CeEEEecChHHHHH
Q 038815 408 D--GLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~--G~iv~~G~~~~~~~ 422 (1436)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-27 Score=299.61 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=102.7
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhh
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 978 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~ 978 (1436)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 559999999999999999999999999985321 111 12455566531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH-----H
Q 038815 979 LRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1053 (1436)
Q Consensus 979 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~-----~ 1053 (1436)
+.. .+ +++ +...|+..+.+.. +..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 122 2245665555443 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1054 AAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
...+.++++.+++.|.|||+|+|++
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcc
Confidence 9999999999988899999999997
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-26 Score=293.21 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=119.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHH---------------------HHHHCCCCC--Cee---EEEEEEcCeec
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGSITISGYLK 945 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl---------------------~~Lag~~~~--~~~---~G~i~i~g~~~ 945 (1436)
..+|+|||++|++||++||+||||||||||+ +++.|...+ +.+ .|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999997 666664332 112 45677777543
Q ss_pred ccccccceEEEeccCCCC-------------------CCCCCHHHHHHHhhhhcCCCCCCHHHHHH------HHHHHHHH
Q 038815 946 KQETFTRISGYCEQNDIH-------------------SPLVTVYESLLYSAWLRLPPEVDSETRKM------FIEEIMEL 1000 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~-------------------~~~lTv~E~l~f~a~lr~~~~~~~~~~~~------~v~~~l~~ 1000 (1436)
.. ..++.+||++|...+ ++.+||+|++.+...+..... ..+.... ...++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 21 123345555554322 356799999987533321110 0000000 11235888
Q ss_pred cCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1001 VELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1001 l~L~~~-~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.+...+++.|+++++.|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 899764 4555 35799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHHhhh
Q 038815 1078 PSIDIFESFDE 1088 (1436)
Q Consensus 1078 ps~~if~~FD~ 1088 (1436)
+. ..+..|+
T Consensus 264 ~~--~~~~~d~ 272 (670)
T 3ux8_A 264 ED--TMLAADY 272 (670)
T ss_dssp HH--HHHHCSE
T ss_pred HH--HHhhCCE
Confidence 75 3456787
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=286.51 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=141.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+...|+++.+ +++.+|+|+|+.+++|++++|+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 45555666554 24679999999999999999999999999999999995 111 34332
Q ss_pred ccccccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 038815 946 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVSGLSTEQ 1023 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGq 1023 (1436)
.. ...++|++|+. ..++.+||.|++.+ .. . .. .+.++++++.+||. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 11 12368999874 67788999999975 11 1 11 35678999999995 5666664 5799999
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||+||++|+.+|+||+|||||+|||+.+...+++.|++ .|.|||+++|++. .+-+..|+
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adr 614 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEY 614 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999988 5899999999963 45566777
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=259.83 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhh--------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 038815 311 LTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL--------ALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382 (1436)
Q Consensus 311 ~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~--------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~ 382 (1436)
.+..+|+.+||... .+ ++.+..|||||||||.||+++ +|+|||||+|||+.+...+++.|+++.+ .+
T Consensus 784 ~~~~~L~~vGL~~~---~l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KL-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BT-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hc-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35678999999642 12 245668999999999998776 7999999999999999999999999865 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 383 GTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 383 ~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
.| ||.+.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~T-VIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NT-VIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CE-EEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 55 55578888766 559999999 899999999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=258.22 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHhhhhh--------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 038815 312 TDYYLKVLGLDI-CADTLVGDEMIRGISGGQKRRVTTGPA--------LALFMDEISNGLDSSTTFQIVNSIRQNIHILN 382 (1436)
Q Consensus 312 ~~~~l~~lgL~~-~~~t~vg~~~~rgLSGGqrkRvsia~a--------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~ 382 (1436)
...+|+.+||.. ..+ +.+..|||||||||+||++ .+|+|||||+|||+.+..++++.|+++++ .+
T Consensus 825 ~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTT-----CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCccccc-----CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356899999975 344 3455799999999999654 46899999999999999999999999865 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 383 GTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 383 ~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 899 -~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 -DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp -CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred -CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 4555578888775 689999999 789999999998875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-22 Score=253.29 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHhhhh--------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 038815 311 LTDYYLKVLGLDIC-ADTLVGDEMIRGISGGQKRRVTTGP--------ALALFMDEISNGLDSSTTFQIVNSIRQNIHIL 381 (1436)
Q Consensus 311 ~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqrkRvsia~--------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~ 381 (1436)
.++.+|+.+||... .+ +.+..|||||||||.||+ +.+|+|||||+|||..+..++.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999762 23 445679999999999954 357899999999999999999999999875 3
Q ss_pred CCeEEEEEecChhhHHhhcCeEEEe------cCCeEEEecChHHHH
Q 038815 382 NGTAVISLLQPAPETYDLFDDIILL------SDGLIVYLGPRELVL 421 (1436)
Q Consensus 382 ~~t~ii~~~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 421 (1436)
+.+||.++|+.+++ +.+|+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 44555588888888 889999999 799999999998874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-24 Score=257.38 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=135.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-E-EEEcCccCCCCCccceEEEEcCCCC---CCCCCCH
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-R-VTYNGHNMDEFEPQRVAAYISQHDN---HIGEMTV 256 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 256 (1436)
.++|+.+++|++++|+||||||||||+|+|+|...|+ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999876 99 9 999982 3567899999873 5567899
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+ |+..... +.. ..+ .++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~-~~~--------~~~---------------------------~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT--------LLH---------------------------NKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC--------SSC---------------------------CBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Ccc--------hHH---------------------------HHHHHHHHhCCCcccc-------hhh
Confidence 9999 7543210 000 000 0112355678876543 457
Q ss_pred CCHHHHHHHhhhhh--h-----h----hheeC-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----hHHhh
Q 038815 337 ISGGQKRRVTTGPA--L-----A----LFMDE-ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP-----ETYDL 399 (1436)
Q Consensus 337 LSGGqrkRvsia~a--~-----v----lllDE-ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~l 399 (1436)
|||||||||++|++ + + ++||| ||+|||+. ...+.+.+++ .+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999888 5 6 99999 99999999 4444444443 45666665555431 66689
Q ss_pred cCe-----EEEec-CCeEEEecChHHHH
Q 038815 400 FDD-----IILLS-DGLIVYLGPRELVL 421 (1436)
Q Consensus 400 fD~-----vilL~-~G~iv~~G~~~~~~ 421 (1436)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-22 Score=243.69 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=131.1
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCC------------------------------------CeeEE
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 936 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~------------------------------------~~~~G 936 (1436)
.+++++|+.+.|| +++|+|||||||||||++|.+...+ ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999653221 01157
Q ss_pred EEEEcCeecccc---cc-cceEEEeccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 038815 937 SITISGYLKKQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAWLR-----------------------LPPEVD--- 986 (1436)
Q Consensus 937 ~i~i~g~~~~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr-----------------------~~~~~~--- 986 (1436)
.+.+||.+.... .. ...+++++|++.+... +..+...|--... +.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999876532 22 2348999998766542 4544443321100 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 038815 987 -------------------------------SETRKMFIEEIMELVELNPLR----------------QS---LVGL--- 1013 (1436)
Q Consensus 987 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~vg~--- 1013 (1436)
.+.-...+++.++.+++.... +. ..+.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000113345566666664410 00 1111
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1014 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1014 ---~~~~~-lSgGqrkRl~ia~~L~~~p--~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.+...|.+.|++++ +|+|||+|+|+| ++.+..|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00122 6999999999999999999 9999999999999999999999999997 589999999997 4556677
Q ss_pred h
Q 038815 1088 E 1088 (1436)
Q Consensus 1088 ~ 1088 (1436)
+
T Consensus 364 ~ 364 (415)
T 4aby_A 364 H 364 (415)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-23 Score=255.89 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=130.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-E-EEEcCeecccccccceEEEeccCCC---CCCCCCHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-S-ITISGYLKKQETFTRISGYCEQNDI---HSPLVTVY 970 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~d~---~~~~lTv~ 970 (1436)
.++|+.+++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999865 3568 8 999982 2467899999874 45567999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCCc----ceecC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1044 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~--L~~~p~i----l~lDE 1044 (1436)
|++ |......... . .+.+.++++.+||.+..+ ...|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~~--~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT--L---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC--S---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc--h---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 6543211110 0 122456677788877665 25799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC--H---HHHHHhhh
Q 038815 1045 -PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS--I---DIFESFDE 1088 (1436)
Q Consensus 1045 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps--~---~if~~FD~ 1088 (1436)
||+|||.. ...+.+.++++ |.|+|+++|+.. . ++-+..|+
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999999 55555555443 889999999987 3 33356676
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-24 Score=232.88 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=105.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++.+|+|| ++||+++|+|||||||||||++|+|. . +.+|+|............++.+||++|+. +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35688886 89999999999999999999999997 4 22344421101111123456799999975 4
Q ss_pred HHH-HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC
Q 038815 971 ESL-LYSA----WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1045 (1436)
Q Consensus 971 E~l-~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP 1045 (1436)
|++ .+.. .+... .. .+.++++++. ++ ||||||+|||+|+.+|++|+||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCC
Confidence 454 2211 11110 01 1234555543 22 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhhcCCcccCCCCCCccchhhhccc
Q 038815 1046 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQKIKDGCNPATWMLEVTA 1111 (1436)
Q Consensus 1046 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~~~g~~~~~~~~NPAd~~l~v~~ 1111 (1436)
|+| +...+++.|+++ +.|+||| ++|+++. .|. +....|...|++++..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~~-------~~~~~~G~~~~~~~~~ 179 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VDL-------PGGQKSGLRLVRHILR 179 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC------------------------CCHHHHHHTT
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH-----HhC-------cCCCCCcHHHHHHHhc
Confidence 999 888999999988 6689999 9999752 111 1223577777777654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-21 Score=206.16 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=100.7
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCC-CCCHHHHHHH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSP-LVTVYESLLY 975 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~-~lTv~E~l~f 975 (1436)
|||+.+++||+++|+||||||||||++++.+... .+++ + ...|+++|+..... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 11256666532100 001111111
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH---
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1052 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~--- 1052 (1436)
... +.....+.....+.. ...|+|||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 122234554444432 346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1053 -------------AAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1053 -------------~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
....+++.|+++.++|.|+|+++|++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668999999988777999999999864
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=226.40 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=140.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS-----------------------------------LKV 221 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~-----------------------------------~~~ 221 (1436)
+..+|+++++.+.+| +++|+|||||||||||++|.+...+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345899999999999 99999999999999999997766421 012
Q ss_pred ccEEEEcCccCCCCCc----cceEEEEcCCCCCCCCCCHHHHHHhhhhhccCC-C----ccchhhhhhHHhhhcCCCCCC
Q 038815 222 SGRVTYNGHNMDEFEP----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVG-S----RFDMLTELDKRENEAGIKPDP 292 (1436)
Q Consensus 222 ~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 292 (1436)
+|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.......+ +...-.+...
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~-~~~~l~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVS-RLERLQASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHC-----
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHhhhh
Confidence 6889999998754222 1347999998765543 6655554422111000 0 0000000000 0000000000
Q ss_pred -----------ChHHHH-----------HHhhhhhhHHHHHHHHHHHHcCCccccc----------c---------cccC
Q 038815 293 -----------DIDVFM-----------KAAATEGQEANVLTDYYLKVLGLDICAD----------T---------LVGD 331 (1436)
Q Consensus 293 -----------~~~~~~-----------~~~~~~~~~~~~~~~~~l~~lgL~~~~~----------t---------~vg~ 331 (1436)
.++.+. +............++..++.++++...- + .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 000000 0011111222334556677777754110 0 1110
Q ss_pred ------cccCC-CCHHHHHHHhhh-----hh--hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 038815 332 ------EMIRG-ISGGQKRRVTTG-----PA--LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETY 397 (1436)
Q Consensus 332 ------~~~rg-LSGGqrkRvsia-----~a--~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 397 (1436)
..++. +||||||||+|| .+ .+|+|||||+|||+.+...+.+.|+++. .+.++|+ ++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~-itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLV-VTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCcH-HHH
Confidence 11222 699999999995 45 6899999999999999999999999875 2455554 66765 567
Q ss_pred hhcCeEEEe----cCCeEEEec
Q 038815 398 DLFDDIILL----SDGLIVYLG 415 (1436)
Q Consensus 398 ~lfD~vilL----~~G~iv~~G 415 (1436)
+.+|++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-21 Score=234.02 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=133.1
Q ss_pred eEEeeceEeeEeCCc--------------------EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccccc
Q 038815 892 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT 951 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge--------------------~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~ 951 (1436)
+.+|++||+.+++|+ ++||+||||||||||+|+|+|.... .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 358999999999999 9999999999999999999997653 3688888885432
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHH
Q 038815 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTI 1029 (1436)
Q Consensus 952 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--qrkRl~i 1029 (1436)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .+|+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889999875531 1 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCcceecCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCCH-HHHHHhhh
Q 038815 1030 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ETG----RTVVCTIHQPSI-DIFESFDE 1088 (1436)
Q Consensus 1030 a~~L~~----------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~t~Hqps~-~if~~FD~ 1088 (1436)
|++|+. +|++++|||||+|||+.+...+++.|+++. +.| .+|++++|..+. ++=++-|.
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 999999 999999999999999999999999999985 223 678899998764 34445555
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-19 Score=210.94 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+++.|+++.+.|.|||+++|++. +.+..|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCE
Confidence 4579999999999999999 799999999999999999999999999999888999999999974 3566676
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-19 Score=211.68 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+|+|++. +.+..|+
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~ 290 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADL 290 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCce
Confidence 3579999999999999997 5789999999999999999999999999985 4889999999964 5666675
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-19 Score=194.74 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
.++|+||||||||||+++|+|... |.++|...... ..++.+||++|+. ++.+++ + +.+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFT- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcCC-
Confidence 589999999999999999999653 23344322111 3456789999975 333333 1 111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCCcceecC--CCCCCCHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1056 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~-----L~~~p~il~lDE--PTsgLD~~~~~~ 1056 (1436)
. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 66 ---~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 66 ---S----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ---C----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ---c----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecC
Q 038815 1057 VMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1057 i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+.+.+++ .+.|+|+++|+
T Consensus 122 l~~~l~~---~~~~~i~~~H~ 139 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPI 139 (178)
T ss_dssp HHHHHTC---TTSEEEEECCS
T ss_pred HHHHHhc---CCCeEEEEEcc
Confidence 9988875 47789999983
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=201.54 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=65.3
Q ss_pred cccCCCCHHHHHHHhhhhhh-----------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 332 EMIRGISGGQKRRVTTGPAL-----------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~-----------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+.+..|||||||||+||+++ +|||||||+|||+.+..++++.|+++.+ .+.| |+.++|+.+. .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~t-vi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKV-IVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSE-EEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCE-EEEEecchHH-HHhC
Confidence 45678999999999996554 4999999999999999999999998754 3445 4556777766 7789
Q ss_pred CeEEEecCCeEEE
Q 038815 401 DDIILLSDGLIVY 413 (1436)
Q Consensus 401 D~vilL~~G~iv~ 413 (1436)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-20 Score=209.79 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD 986 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 986 (1436)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999754 3579999999876555556789999999999999999999988754332 111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 987 SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 987 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
. +.+.+.++ ....+.+. ..||||||||+.|||+++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11223332 23344442 4699999999999999875 999999999999987 445556655
Q ss_pred cCCEEEEEecCC
Q 038815 1067 TGRTVVCTIHQP 1078 (1436)
Q Consensus 1067 ~g~tvi~t~Hqp 1078 (1436)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-20 Score=202.80 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=92.1
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
|+.++++.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~--- 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL--- 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC-----
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH---
Confidence 4555667799996 89999999999999999999999999 876 787732111111112346789999975
Q ss_pred CCCCHHHHH-HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 252 GEMTVRETL-AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 252 ~~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
+||+ .+..... ..+.. . . + ...++.+++. |
T Consensus 76 -----~enl~~~~~~~~---------~~~~~------~-~--~---------------~~~~~~~l~~-g---------- 106 (208)
T 3b85_A 76 -----NEKIDPYLRPLH---------DALRD------M-V--E---------------PEVIPKLMEA-G---------- 106 (208)
T ss_dssp ---------CTTTHHHH---------HHHTT------T-S--C---------------TTHHHHHHHT-T----------
T ss_pred -----HHHHHHHHHHHH---------HHHHH------h-c--c---------------HHHHHHHHHh-C----------
Confidence 6676 4421100 00000 0 0 0 0012333332 2
Q ss_pred CcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 331 DEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
+ ||||||+||+++ +|+|||||+| ++.++.+.|+++ . .+++|+ ++|+..++
T Consensus 107 ------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999998776 5999999999 788888888876 3 345566 67776543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-20 Score=218.38 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=126.8
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc
Q 038815 178 LTILKDVSGIIRPGS--------------------MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge--------------------~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 237 (1436)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|..+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999987 999999997653
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHH
Q 038815 238 QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK 317 (1436)
Q Consensus 238 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 317 (1436)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 5788899888755310 0 01345678
Q ss_pred HcCCcccccccccCcccCCCCHH--HHHHHhhhh---------------hhhhheeCCCCCCCHHHHHHHHHHHHHHHH-
Q 038815 318 VLGLDICADTLVGDEMIRGISGG--QKRRVTTGP---------------ALALFMDEISNGLDSSTTFQIVNSIRQNIH- 379 (1436)
Q Consensus 318 ~lgL~~~~~t~vg~~~~rgLSGG--qrkRvsia~---------------a~vlllDEptsgLDs~t~~~i~~~l~~~~~- 379 (1436)
.++|.+... .+. +||| ||||+.|++ |.+++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~------~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF------FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE------EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC------eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888875421 122 9999 999999954 446899999999999999999999998752
Q ss_pred ---hc---CCeEEEEEecChhh--HHhhcCeEE-EecCC
Q 038815 380 ---IL---NGTAVISLLQPAPE--TYDLFDDII-LLSDG 409 (1436)
Q Consensus 380 ---~~---~~t~ii~~~q~~~~--~~~lfD~vi-lL~~G 409 (1436)
.. ..++++...|...+ +.+++|+|. .|.+|
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 22 23455444554554 777777764 34343
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-20 Score=217.02 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=109.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 257 (1436)
.++|+|||+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46999999999999999999999999999999999997 6888 356788876665 4787
Q ss_pred H-HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 258 E-TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 258 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
| ||.|.... +. .....++.+ |++..| ...
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 6 77663100 00 011223332 444333 347
Q ss_pred CCHHHHHHHhhhhhhh----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 038815 337 ISGGQKRRVTTGPALA----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412 (1436)
Q Consensus 337 LSGGqrkRvsia~a~v----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv 412 (1436)
|||||||| ||+++ +++ |++||+.+...+.. + +| ..++.+.+|+| +|++|+++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV---TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE---EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---CC
T ss_pred cCHHHHHH---HHHHhCCCCEEE---ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEEE
Confidence 99999999 66554 334 99999999877752 1 22 23345689999 99999999
Q ss_pred EecChHHHHHHHHhc
Q 038815 413 YLGPRELVLDFFESM 427 (1436)
Q Consensus 413 ~~G~~~~~~~~F~~l 427 (1436)
+.|+++++..+|.++
T Consensus 257 ~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 257 FNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999986666553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-20 Score=206.82 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=115.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++| ..+++||+++|+||||||||||+++|+|... .+.+.+.+.+.+.. ...++.++|++|+...++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 457788 6999999999999999999999999999754 22333333332211 123456899999987777778877
Q ss_pred HHHHhhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 038815 972 SLLYSAWLRL---PPEVDSETRKMFIEEI------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1042 (1436)
Q Consensus 972 ~l~f~a~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~l 1042 (1436)
++........ ....+.++.++.+++. ++.+|+.+.++... +.|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012233444455555 55555555555442 3466 88999999999
Q ss_pred cCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhhh
Q 038815 1043 DEPTSGL----DARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1043 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
||||+|+ |+..+..+++.++++.+ .|.|||+++|++. ++.+..|+.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i 198 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSL 198 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHH
Confidence 9999998 78899999999999975 5899999999974 677888884
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=194.32 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=62.4
Q ss_pred ccCCCCHHHHHHHhhhhh---------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 333 MIRGISGGQKRRVTTGPA---------LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a---------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..|||||||||+||++ .+++|||||++||+.....+.+.++++. .+.++ +.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~v-i~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQF-IVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEE-EEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeE-EEEECC-HHHHhhCceE
Confidence 456799999999999664 4699999999999999999999999863 24444 446666 5678899987
Q ss_pred --EEecCCeE-EEecChH
Q 038815 404 --ILLSDGLI-VYLGPRE 418 (1436)
Q Consensus 404 --ilL~~G~i-v~~G~~~ 418 (1436)
++|.+|+. +.....+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 88888854 3333333
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-19 Score=204.69 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=118.0
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cc--cceEEEeccCCC-CC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TF--TRISGYCEQNDI-HS 964 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~d~-~~ 964 (1436)
++++|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999654 2358899999764321 12 246899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--ccee
Q 038815 965 PLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1042 (1436)
Q Consensus 965 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~l 1042 (1436)
|.+|++|++.++.. + . .+ ..+++.+|+.+..+..+ ..|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~--~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-T--CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-C--Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 1 00 13456677776665553 4688 999999999999999 9999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCC
Q 038815 1043 DEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQP 1078 (1436)
Q Consensus 1043 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp 1078 (1436)
| ||+|||+... ++++.+ .|.|+|+++|..
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLD 257 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCC
Confidence 9 9999998754 244443 489999999953
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-18 Score=199.22 Aligned_cols=143 Identities=11% Similarity=0.152 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCCCc
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 272 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 272 (1436)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--
Confidence 47999999999999999999999887 9999999998765545578999999999999999999998864322100
Q ss_pred cchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhhh
Q 038815 273 FDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA 352 (1436)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v 352 (1436)
..+.. ...+. .+..+. ....|||||||||.+|++.+
T Consensus 79 --------------------~~~~i---------------~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 79 --------------------CWEPI---------------EKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp --------------------CSHHH---------------HHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCE
T ss_pred --------------------HHHHH---------------HHHHH----HHHHhh-----hHHhcCcccchhhhhheeee
Confidence 00000 00000 111122 22369999999999988774
Q ss_pred --hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 038815 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL 390 (1436)
Q Consensus 353 --lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~ 390 (1436)
+++|||+.|||+.. .+.++.+.+ . .++|++++
T Consensus 115 ~lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 CLYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp EEEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred eeEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 89999999999987 334444433 2 55555443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-20 Score=205.48 Aligned_cols=176 Identities=10% Similarity=-0.011 Sum_probs=113.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----ccccceEEEeccCCCCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----ETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~l 967 (1436)
+.-|+|||+.+++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|+...++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 457999999999999999999999999999999999652 66777 654321 12345689999986554433
Q ss_pred CH-HHHHH---HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCC
Q 038815 968 TV-YESLL---YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPS 1038 (1436)
Q Consensus 968 Tv-~E~l~---f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~i-----a~~L~~~p~ 1038 (1436)
+. .+++. +..... ..+ ...++++++..++. +.. ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 21 11111 111110 011 12356666654321 111 3689999999999 899999999
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHH-------cCCEEEEEecCCCHHHHHHhhhhc
Q 038815 1039 IIFMDEPTSGLDARAAAIVMRTVKNTVE-------TGRTVVCTIHQPSIDIFESFDEAI 1090 (1436)
Q Consensus 1039 il~lDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~t~Hqps~~if~~FD~~~ 1090 (1436)
+++|||||+++|..+...|.+.|++..+ .+.+.|++.|++ .+.++..|+.+
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999998877543 356788888875 46777777743
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-18 Score=181.43 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC---CccceEEEEcCCCCCCCCCCHHHHHHhhhhhccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF---EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 269 (1436)
.++|+||||||||||+++|+|.+. |.++|.+..+. ..++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh---
Confidence 579999999999999999999974 22344332111 2245689999975 222222 10 00
Q ss_pred CCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhh
Q 038815 270 GSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349 (1436)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~ 349 (1436)
+... +..+ ++.+..||||||||++|++
T Consensus 63 --------------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~ 89 (178)
T 1ye8_A 63 --------------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILE 89 (178)
T ss_dssp --------------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHh
Confidence 0000 0111 2344579999999999988
Q ss_pred h-----h-----hhheeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhhHHhhcCeEEEecCCeEEE
Q 038815 350 A-----L-----ALFMDE--ISNGLDSSTTFQIVNSIRQNIHILNGTAVISLL--QPAPETYDLFDDIILLSDGLIVY 413 (1436)
Q Consensus 350 a-----~-----vlllDE--ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~lfD~vilL~~G~iv~ 413 (1436)
+ + +++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|++++
T Consensus 90 aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 90 RAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4 599999 9999999999888888865 3556777775 788888888988 5677765
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-17 Score=176.76 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=48.4
Q ss_pred CCCHHHHHHHhhhhhh-----hhheeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 038815 336 GISGGQKRRVTTGPAL-----ALFMDEISNGLDSS----------------TTFQIVNSIRQNIHILNGTAVISLLQPAP 394 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~-----vlllDEptsgLDs~----------------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 394 (1436)
..||||||||+||+++ +++|||||+|||+. ...++.+.++++.+. +.|+ +.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tv-i~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRY-VYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSE-EEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcE-EEEeCCHH
Confidence 4699999999998876 59999999999999 558888888877654 5454 45678777
Q ss_pred hHHh
Q 038815 395 ETYD 398 (1436)
Q Consensus 395 ~~~~ 398 (1436)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-18 Score=210.72 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=135.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc---cCCCC--------CccceEEEEc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH---NMDEF--------EPQRVAAYIS 245 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~ 245 (1436)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 46699999 999999999999999999999999999999987 999999998 44332 1246799999
Q ss_pred CC-CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 246 QH-DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 246 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
|+ +..++.+||.+|+.+.++.... . + .++
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~-----------------------------------~-~~v 249 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------R-----------------------------------G-QHV 249 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------T-----------------------------------T-CEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------C-----------------------------------C-CCH
Confidence 95 5567788999999886543210 0 0 000
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhhhheeCC--CCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecChhh
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALALFMDEI--SNGLDSSTTFQIVNSIRQNIHI--LNGT-----AVISLLQPAPE 395 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~vlllDEp--tsgLDs~t~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~~~ 395 (1436)
.. .+ + .+..+|||| |||+|| +.|| |+|||+.+..++.+.++++.+. .+++ +|+..+|+..
T Consensus 250 ~~-~l-d-~l~~lS~g~-qrvslA------l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 250 LL-IM-D-SLTRYAMAQ-REIALA------IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp EE-EE-E-CHHHHHHHH-HHHHHH------TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred HH-HH-H-hHHHHHHHH-HHHHHH------hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 00 00 1 133599999 999998 5667 9999999999999999886431 1242 5555667766
Q ss_pred HHhhcCeEEEecCCeEEEecChHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
...+|++++|.+|+++..|+..++
T Consensus 319 -~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 -DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -chhhceEEEEeCcEEEEeCCHHHc
Confidence 678999999999999999987664
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-18 Score=202.00 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=118.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccc--cceEEEeccCCC-CCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETF--TRISGYCEQNDI-HSP 965 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~--~~~~gyv~Q~d~-~~~ 965 (1436)
+.+|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+... ..+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999654 235889999976432 112 346899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceec
Q 038815 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1043 (1436)
Q Consensus 966 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lD 1043 (1436)
..|++|++.++.. + . .+ ..+++.+|+.+..+..+ ..|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 1 10 13455677776665553 4688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
||+|||+.... +++.+ .|.|+|+++|.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-17 Score=192.65 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=96.5
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.-. ...++.++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997653 46999999853110 00122222221
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+++.|+.+...+.|+|+|+|+++ ..+..|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dr 283 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIR 283 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHH
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhh
Confidence 2356677776543458999999987 5677887
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-19 Score=193.48 Aligned_cols=185 Identities=10% Similarity=0.030 Sum_probs=108.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
..++++| ..|++|++++|+||||||||||+|+|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 3457888 68999999999999999999999999999852 23333333322211 123568999999888888888
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHH------HHHcCCccccccccc
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYY------LKVLGLDICADTLVG 330 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~~t~vg 330 (1436)
.|++.+.....+....+. ..+.+ ....++.. ++.+|+.+..+
T Consensus 82 ~~~l~~~~~~~~n~~~~g----~~~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~---- 129 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSG----TLAQP------------------------VRAAAATGVPVLIEVDLAGARAIKK---- 129 (207)
T ss_dssp TTCEEEEEEEGGGTEEEE----EEHHH------------------------HHHHHHHTCCEEEECCHHHHHHHHH----
T ss_pred cCCceeehhhcCchhhcC----CcHHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHH----
Confidence 887754321111000000 00000 00111111 22233332222
Q ss_pred CcccCCCCHHHHHHHhhhhhhhhheeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 331 DEMIRGISGGQKRRVTTGPALALFMDEISNGL----DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a~vlllDEptsgL----Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
..++.|| +-+..|.+++|||||+|| |+..+.++.+.++++.+..+.|+ +.++|+.+++..++|+|++|
T Consensus 130 -~~~~~lS------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 130 -TMPEAVT------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp -HCTTSEE------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHHHHHHHHC-
T ss_pred -hcCCcEE------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHHHHHHHHHh
Confidence 2233455 223567789999999998 78899999999998865444444 55789999999999999998
Q ss_pred c
Q 038815 407 S 407 (1436)
Q Consensus 407 ~ 407 (1436)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=181.55 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrk------Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||| |+++|++|+.+|++|+|||||+|||+.+...+++.|+++.+.|.|||+++|++ ++++..|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 4679999999 66778888889999999999999999999999999999887789999999995 45666666
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-19 Score=194.98 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=89.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----cceEEEEcCCCCCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP----QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 253 (1436)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88888 776543322 3467899998765554
Q ss_pred CCH-HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 254 MTV-RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 254 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
++. .+++.+. ... +..|.. . ...++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~----~----------------------------~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT----L----------------------------KSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE----E----------------------------HHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC----c----------------------------HHHHHHHHhCCCc-----EEEE--
Confidence 331 1111110 000 000000 0 0012333333221 1111
Q ss_pred ccCCCCHHHHHHHhh-----hh-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 333 MIRGISGGQKRRVTT-----GP-----ALALFMDEISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsi-----a~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
..+|||||||+++ ++ +.+++|||||+++|..+...+.+.++....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3699999999999 43 335899999999999999899888877543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-17 Score=190.78 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=119.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------ccceEEEEcCCCC-C
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------PQRVAAYISQHDN-H 250 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 250 (1436)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45788899999999999999999999999999999876 899999998865421 1235899999988 8
Q ss_pred CCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc
Q 038815 251 IGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG 330 (1436)
Q Consensus 251 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg 330 (1436)
+|.+||+|++.++.. .+ ++ ..+++.+|+.+..+..
T Consensus 167 ~~~~~v~e~l~~~~~-~~----~d--------------------------------------~~lldt~gl~~~~~~~-- 201 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYSL-- 201 (302)
T ss_dssp CHHHHHHHHHHHHHH-TT----CS--------------------------------------EEEECCCCCSSCCHHH--
T ss_pred CHHHHHHHHHHHHHH-cC----Cc--------------------------------------chHHhcCCCCcchhHH--
Confidence 999999999987532 10 00 0023345665544433
Q ss_pred CcccCCCCHHHHHHHhhhh-----hh--hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 038815 331 DEMIRGISGGQKRRVTTGP-----AL--ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP---------AP 394 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~-----a~--vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~ 394 (1436)
+..|| |||++|++ |. +|+|| ||+|||+... ++++.+..+.|+++ ++|. ..
T Consensus 202 ---~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 202 ---MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ---HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ---HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 34588 99999974 45 79999 9999998754 23333334556655 4552 22
Q ss_pred hHHhhcCeEEEecCCeE
Q 038815 395 ETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 395 ~~~~lfD~vilL~~G~i 411 (1436)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33456678888888864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-17 Score=183.10 Aligned_cols=155 Identities=8% Similarity=0.000 Sum_probs=97.8
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCH
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV 969 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 969 (1436)
+++.+|+|||+.+++|+++||.||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999853 112222 2356789999986 5677899
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC
Q 038815 970 YESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 970 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL 1049 (1436)
.|++.+....... +.+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764332111 101111122334444433 2333333 35799999999988 5778899999999999888
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1050 DARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1050 D~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
|.. ++++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2222 37899999996
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-17 Score=191.83 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+++|+++||+||||||||||+++|+|..... +|. +.++|++|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 8999999999999999999999999964321 121 457999999999888 999998542211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
..+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+||+||||++.+|.
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222345678888887 44444432 47999999999999999999999999999999985
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-16 Score=193.88 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=121.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe---eccc--------ccccceEEEeccC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY---LKKQ--------ETFTRISGYCEQN 960 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 960 (1436)
..+|+++ +.+.+|++++|+|||||||||||++|+|.... ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999997653 4799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 961 -DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 961 -d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
+...+.+||.+++.+.+....... ++++ .+.|. ...+|+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHVL------LIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEEE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCHH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 555677899999887654321000 0000 11121 34699999 999999 888888
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCCHHHHHHhhh
Q 038815 1040 IFMDEPTSGLDARAAAIVMRTVKNTVE---T-GR-----TVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1040 l~lDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.+...+.+.++++.+ . |. ||++++|+.+. ...|+
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~---~iad~ 324 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQD---PIADS 324 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCC---HHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccc---hhhce
Confidence 999999999999999999866 3 64 99999999983 34565
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-18 Score=195.75 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=91.3
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH-
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE- 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E- 971 (1436)
.+|++||+.|++|+++||+||||||||||+++|+|.. +|+| ++|++|+..+++ .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHH
Confidence 4899999999999999999999999999999999965 3555 346677766655 47776
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
|+.|.. +.+. .+++.++.+ |.+..| | ..|||||||| ||+|+.+|+||+ ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 775531 1111 234555553 333333 2 4799999999 999999999999 999999
Q ss_pred HHHHHHH
Q 038815 1052 RAAAIVM 1058 (1436)
Q Consensus 1052 ~~~~~i~ 1058 (1436)
.+...|.
T Consensus 227 ~~~~~i~ 233 (305)
T 2v9p_A 227 QAEDRYL 233 (305)
T ss_dssp TTCGGGG
T ss_pred HHHHHHH
Confidence 9998886
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-15 Score=175.87 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred CcccC-CCCHHHHHHHhhhhh--------------hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 331 DEMIR-GISGGQKRRVTTGPA--------------LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 331 ~~~~r-gLSGGqrkRvsia~a--------------~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
+..++ .+|||||||++||++ .+|+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 45566 799999999999543 469999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEecCCeEEEecChHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~ 420 (1436)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-16 Score=186.52 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=119.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------ccceEEEEcCCCC-CC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------PQRVAAYISQHDN-HI 251 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 251 (1436)
+.+|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688889999999999999999999999999999876 899999998864321 1235899999988 88
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
|.+||+|++.++.. ++ ++ ..+++.+|+.+..+.
T Consensus 225 p~~tv~e~l~~~~~-~~----~d--------------------------------------~~lldt~Gl~~~~~~---- 257 (359)
T 2og2_A 225 AATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYS---- 257 (359)
T ss_dssp HHHHHHHHHHHHHH-TT----CS--------------------------------------EEEEECCCCSSCCHH----
T ss_pred hhhhHHHHHHHHHh-CC----CH--------------------------------------HHHHHhcCCChhhhh----
Confidence 99999999988632 10 00 001234556554433
Q ss_pred cccCCCCHHHHHHHhhhh-----hh--hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhh
Q 038815 332 EMIRGISGGQKRRVTTGP-----AL--ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP---------APE 395 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~-----a~--vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 395 (1436)
.+..|| |||+.|++ |. +|+|| ||+|||+.... +.+.+..+.|+|+ ++|. ...
T Consensus 258 -~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 258 -LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp -HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred -HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 334688 99999975 44 79999 99999987652 3333334556655 5552 223
Q ss_pred HHhhcCeEEEecCCeE
Q 038815 396 TYDLFDDIILLSDGLI 411 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~i 411 (1436)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888888753
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-16 Score=178.63 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=102.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEE-EcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SIT-ISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~-i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
.+|+++++.+++|++++|+||||||||||++.|+|.... ..| .|. +++. .......+.+.++.|... +++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e-~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE-ESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS-SCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc-CCHHHHHHHHHHHHcCCC----hhhc
Confidence 479999999999999999999999999999999995421 124 443 3332 222222222223333221 2233
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCCcceecCCCC--
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1047 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq-rkRl~ia~~L~~~p~il~lDEPTs-- 1047 (1436)
+++... .+ +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~-~~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKRE-II------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHH-HH------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccC-CC------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 444322 11 1122233344444322221 1111 13588998 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCC
Q 038815 1048 -G---LDA-RAAAIVMRTVKNTVET-GRTVVCTIHQP 1078 (1436)
Q Consensus 1048 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~t~Hqp 1078 (1436)
+ +|. .....+++.|++++++ |.|||+++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 5 555 6778899999999865 99999999996
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-15 Score=169.46 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=90.6
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCee-EEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.+.. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~-------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI-------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE--------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee--------
Confidence 789999 89999999999999999999999999653 23 689998886532 223321100
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
.. . +.+++.. ..+ |++||++|..+|++|++|||| |..
T Consensus 75 ------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 00 0 0122211 122 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+...+ ++. ++.|.+|++|+|+++ ..+..|+
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dr 141 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHR 141 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHH
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHH
Confidence 86544 333 456999999999976 4567777
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-16 Score=182.08 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=86.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQ 267 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 267 (1436)
+++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~ 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-K 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-c
Confidence 7899999999999999999999999998774 342 348999999999888 99999865211 1
Q ss_pred cCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhh
Q 038815 268 GVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT 347 (1436)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsi 347 (1436)
+.... .+ .......++.++ ....+.. +..+||||||||++
T Consensus 148 g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 148 GFPES-------------------YN---------------RRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPG 187 (312)
T ss_dssp TSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEE
T ss_pred CCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhh
Confidence 11000 00 112344566666 3333333 34699999999998
Q ss_pred hhh-----hhhheeCCCCCCCH
Q 038815 348 GPA-----LALFMDEISNGLDS 364 (1436)
Q Consensus 348 a~a-----~vlllDEptsgLDs 364 (1436)
+++ .++++|||+..+|+
T Consensus 188 a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCC
T ss_pred HHHhccCCCEEEECCccccCCc
Confidence 654 47999999999986
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=168.21 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1018 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~---------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
.+|||||||++||++|+ .+|+||+|||||++||+.....+++.|+++. .|+|+++|.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence 69999999999999999 8999999999999999999999999998863 799999994
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-17 Score=176.51 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=113.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCC--CCCCHHHHHHHhhhh
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWL 979 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~a~l 979 (1436)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|++|++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986421 368999998776 5679988875531
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCCcceecCCCCC-------
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1048 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGq----rkRl~ia~~L~~~p~il~lDEPTsg------- 1048 (1436)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123466778888887655443 34688886 4789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHH
Q 038815 1049 LDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDI 1082 (1436)
Q Consensus 1049 LD~~~~~~i~~~l~~~-~~~g~tvi~t~Hqps~~i 1082 (1436)
||+.....+.+.+++. .+.|+|++.++|+....+
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~ 165 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYLEQV 165 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999999999999875 456999999999744333
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-15 Score=178.44 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=121.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC----------CccceEEEEcC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----------EPQRVAAYISQ 246 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 246 (1436)
.+.+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 46699999 999999999999999999999999999999987 89999988652111 01245666666
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
.+. ...+.+.-.... ....+ .....| .+
T Consensus 134 ~~~-----~~~~r~~~~~~~------------------------------------------~~~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA------------------------------------------TTIAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH------------------------------------------HHHHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH------------------------------------------HHHHH-HHHhcc----cc
Confidence 542 222222110000 00000 111111 11
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhhhheeCC-CCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhhHHhhc
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALALFMDEI-SNGLDSSTTFQIVNSIRQNIHILNGT-----AVISLLQPAPETYDLF 400 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~vlllDEp-tsgLDs~t~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~~lf 400 (1436)
..+--+.+..+|+|| |||+++ +-|.| |+|||+....++.+.+++.....+++ +|+..+|+.. ..++
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la-----l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~ 233 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA-----SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIG 233 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH-----TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHH
T ss_pred HHHHHhhHHHHHHHH-HHHHHH-----cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhh
Confidence 110002345699999 899998 34555 69999999999999998764312344 5565667766 5789
Q ss_pred CeEEEecCCeEEEecChHHH
Q 038815 401 DDIILLSDGLIVYLGPRELV 420 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~ 420 (1436)
|++++|.+|+++..|+.++.
T Consensus 234 d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 234 DEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHCSEEEEBCHHHHTT
T ss_pred hheEEeeCcEEEEeCCHHHc
Confidence 99999999999999987664
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-15 Score=174.09 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-RVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
..++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 345899999999999999999999999999999999998764 56 66554432211000011111111110 01
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.+++..+ .....+.....+.+++..++. +. +.+.
T Consensus 94 ~~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~-~~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LY-DSFA 128 (296)
T ss_dssp GCHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EE-CCCC
T ss_pred hccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EE-CCCC
Confidence 11111110 000011112233333322221 11 1223
Q ss_pred CCCHHH-HHHHh----hhhhhhhheeCCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h-------
Q 038815 336 GISGGQ-KRRVT----TGPALALFMDEISN---G---LDS-STTFQIVNSIRQNIHILNGTAVISLLQPA--P------- 394 (1436)
Q Consensus 336 gLSGGq-rkRvs----ia~a~vlllDEpts---g---LDs-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------- 394 (1436)
.+|.+| +||+. ...|.++++||||+ + +|. ....++++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 588898 66664 13456799999999 5 555 66788999999998766666665 55553 3
Q ss_pred -------------hHHhhcCeEEEecCCeE
Q 038815 395 -------------ETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 395 -------------~~~~lfD~vilL~~G~i 411 (1436)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-15 Score=170.18 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=81.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
+.+++|+|||+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ .++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4566999999999999999999999999999999999975 323232 1345689999985 678899
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.|++.+.......... . ..+.+ .....++.+ .+..+. .+.
T Consensus 75 ~~~~~~~~~~~~~~~~~----~-------------~~~~~---------------~~~~~L~~l--~~~~~~-----~~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----D-------------AFDND---------------LMHRTLKNI--VEGKTV-----EVP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----G-------------GBCHH---------------HHHHHHHHH--HTTCCE-----EEC
T ss_pred HhHhhhhhccCCCCCCc----c-------------cccHH---------------HHHHHHHHH--HCCCCe-----ecc
Confidence 99998775332211000 0 00000 011223322 233332 345
Q ss_pred CCCHHHHHHHhh----hhhhhhheeCCCCCCCHH
Q 038815 336 GISGGQKRRVTT----GPALALFMDEISNGLDSS 365 (1436)
Q Consensus 336 gLSGGqrkRvsi----a~a~vlllDEptsgLDs~ 365 (1436)
.+|+||+||+.+ .++.++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSSCEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCceEEecCCCEEEEeCccccccHH
Confidence 799999999976 345689999998888763
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-15 Score=190.21 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=97.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
++.+++|||+.+++|++++|+|||||||||||+++++...... .|...... ...++++ +..+..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3568999999999999999999999999999999986311000 01000000 0011111 1111111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 135689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1051 ARAAAIVM-RTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1051 ~~~~~~i~-~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.....+. .+++.+++ .|.|||+++|++. +.+..|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99988887 77777765 5999999999964 4455554
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=162.39 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=58.2
Q ss_pred cccCCCCHHHHHHHhh------h-----hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 332 EMIRGISGGQKRRVTT------G-----PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsi------a-----~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
..+..|||||||||+| + .|.+|+|||||+|||+..+..+++.|+++.. .+.++++ ++|+ +++.+.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~-~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEE-EESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EECh-HHHHHhC
Confidence 4567899999996544 3 3457999999999999999999999998754 3455544 6666 5688999
Q ss_pred CeEEEec
Q 038815 401 DDIILLS 407 (1436)
Q Consensus 401 D~vilL~ 407 (1436)
|+|++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-15 Score=175.46 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=46.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee
Confidence 799999999999999999999999999999999999987 9999999863
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-15 Score=195.61 Aligned_cols=135 Identities=21% Similarity=0.168 Sum_probs=100.0
Q ss_pred eEEeeceEeeEeC-------CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEE-EeccCCCC
Q 038815 892 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISG-YCEQNDIH 963 (1436)
Q Consensus 892 ~~iL~~vs~~i~~-------Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~d~~ 963 (1436)
..+++|+++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 4689999999988 999999999999999999999 75420 12344 8999753
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceec
Q 038815 964 SPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1043 (1436)
Q Consensus 964 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lD 1043 (1436)
.+||.|++.. + +|+.+..+. +.+.+|+|++ ++++|++++.+|++++||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~-~~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELS-ETASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHH-HHHHHHHhCCCCcEEEEE
Confidence 4566555411 1 111111110 1235677666 599999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1044 EPTSGLDARA-AAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1044 EPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
|||+|+|+.. ...++..|+.+++. |+++|++||++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 9999999987 46678999999876 999999999853
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-14 Score=184.41 Aligned_cols=128 Identities=21% Similarity=0.141 Sum_probs=95.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++|+|+. |++++|+|||||||||||++|+|.... ...|.+ ... .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHHH
Confidence 5689999999 999999999999999999999985310 001221 111 1245677776 344455555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCcceecCC---C
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1046 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L--~~~p~il~lDEP---T 1046 (1436)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 441 25799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1047 SGLDARAA-AIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1047 sgLD~~~~-~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
++||..+. ..+++.|++ .|.|+|+++|++.
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99998875 578888776 4899999999853
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=181.05 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=94.0
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
...+++|+++.+.+|++++|+|||||||||||+++++..-- ... | +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~------G------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQI------G------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHH------T------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-Hhc------C------------CccccccccchH----
Confidence 35689999999999999999999999999999999431000 000 0 011110000000
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCcceecCCCCC
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEPTSG 1048 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L--~~~p~il~lDEPTsg 1048 (1436)
+++++..+|+. |.+ .+++|+++++++.+|+++ +.+|++++|||||+|
T Consensus 705 -----------------------~d~i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 00001111111 111 246888888888888888 899999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1049 LDARAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1049 LD~~~~~~i-~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+|+.....+ +.+++.+.+ .|+|+|++||++ ++.+..|+
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~ 793 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQ 793 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcc
Confidence 999988877 667777776 499999999994 55677776
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-14 Score=146.02 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia------~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..||||||||++|| ++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|+|||+++|++ ++.+..|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 468999999999886 899999999999999999999999999999999877799999999997 34455665
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-16 Score=178.27 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=85.5
Q ss_pred CceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC-CCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCC
Q 038815 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 890 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+++.+++++++.| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3467999999998 99999999999999999996 32 3456 7777765432222355789999888878899
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1048 (1436)
|.|+.-+...... .+.....++.+.+ ..+.. .+++|||||||+.+|++++ +|++||||++
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998876533210 0000111222211 12222 3579999999999888875 9999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1049 -LDARAAAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1049 -LD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 556666543 778999999964
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-15 Score=170.97 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TF--TRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996542 258899999764221 11 245899999998888889999987
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
++.. +. .+ ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6421 10 00 011222233222211 2455669999999999999994333 3444444
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1055 AIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1055 ~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
..+++.++++.+. |.|+|+++|...
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4566666766554 899999999753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-15 Score=171.52 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=78.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC
Q 038815 171 LPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK-LDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249 (1436)
Q Consensus 171 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 249 (1436)
++++.+++.+++|+++.| +|+||||||||||++.|.|. ..+. +| |.++|.++......+.++|+.|++.
T Consensus 4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp --------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---
T ss_pred CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCC
Confidence 344556678999999998 99999999999999999997 6665 78 8888876643222345789999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
....+||.||..++.... ..+.. ....+.+.+. .
T Consensus 74 ~~~~ltv~Dt~g~~~~~~-------------~~e~~-----------------------~~l~~~l~~~------~---- 107 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAIN-------------CRDCF-----------------------KTIISYIDEQ------F---- 107 (301)
T ss_dssp CCEEEEEEEEC------------------------C-----------------------TTHHHHHHHH------H----
T ss_pred cccCcchhhhhhhhhhcC-------------cHHHH-----------------------HHHHHHHHHH------H----
Confidence 888899999987753211 00000 0001111111 1
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-hhheeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-ALFMDEISNG-LDSSTTFQIVNSIRQNIHILNGTAVISLLQPA 393 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-vlllDEptsg-LDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 393 (1436)
+.+.+++|||||||+.++++. ++++||||++ ||+... +.++.+.. ....++|...|+.
T Consensus 108 -~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 108 -ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp -HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred -HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 133457999999999999887 5899999985 999873 44554432 2244555555544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=157.02 Aligned_cols=151 Identities=20% Similarity=0.170 Sum_probs=102.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
-+++|++++|+||||||||||++.+++... .|.+ +.|.... -...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 489999999999999999999999997432 2333 2243221 12346777665432 11111211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC--CCCHHH---HH
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1055 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs--gLD~~~---~~ 1055 (1436)
. .... ..++++++.+++.+..+.. +..+|+||++++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 2346678888887765543 356999998865 68889999999999999 999744 48
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
.+++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999874 5999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=170.59 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=59.7
Q ss_pred ccCCC-CHHHHHHHhhhh-----h--hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 333 MIRGI-SGGQKRRVTTGP-----A--LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 333 ~~rgL-SGGqrkRvsia~-----a--~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.+..| ||||||||+||+ | .+|+|||||+|||..++..+.+.|+++++ +.+ |+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCHH-HHHhCCEEE
Confidence 35667 999999999954 5 68999999999999999999999999864 445 455677754 556799999
Q ss_pred EecCC
Q 038815 405 LLSDG 409 (1436)
Q Consensus 405 lL~~G 409 (1436)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99665
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-14 Score=159.35 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=85.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCC---CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+-+++|++++|+||||||||||+++|+|. .+. +...|.+.+++.... ..+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 57999999999999999999999999983 221 122356677664210 01112233332222211 2222221
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhh-------CCCcceecCCC
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELVA-------NPSIIFMDEPT 1046 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg-GqrkRl~ia~~L~~-------~p~il~lDEPT 1046 (1436)
+. ...+. .+++++..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 11233 33444566666666 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-cCCEEEEEecCCCH
Q 038815 1047 SGLDAR-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1047 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~t~Hqps~ 1080 (1436)
+++|+. . ...+++.|+++++ .|.|||+++|....
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC
Confidence 999983 2 2367888888765 49999999996543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=178.54 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCHHHHHHHhhh-------hhhhhheeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 336 GISGGQKRRVTTG-------PALALFMDEISNGLDSSTTFQI-VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 336 gLSGGqrkRvsia-------~a~vlllDEptsgLDs~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
++|+|+++++.++ .+.+++|||||+|||+.....+ ...++.+.+..+.++++ ++|. .++.+++|++..+.
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~-aTH~-~el~~lad~~~~v~ 798 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF-ATHF-HELTALANQIPTVN 798 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE-EESC-GGGGGGGGTCTTEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE-EcCc-HHHHHHhcccceeE
Confidence 5676666666553 3457999999999999998888 45556655433555555 5666 56778999999999
Q ss_pred CCeEEEecChHHH
Q 038815 408 DGLIVYLGPRELV 420 (1436)
Q Consensus 408 ~G~iv~~G~~~~~ 420 (1436)
+|++...++.+++
T Consensus 799 ng~v~~~~~~~~l 811 (934)
T 3thx_A 799 NLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEETTEE
T ss_pred eeEEEEEecCCcE
Confidence 9999988876553
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-14 Score=180.18 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=94.7
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+++|+++. ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 5689999999 9999999999999999999999998421000 12111111 133555554 334445555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
++... .+.+|+|++ ++..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 123566665 45555567899999999999999998
Q ss_pred HHHHHH-HHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i-~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.....+ +..++.+.+ .|.|+|++||++. +.+..|+
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~ 738 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEK 738 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhh
Confidence 776665 788888887 4999999999974 3455565
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-14 Score=163.91 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=107.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc----------ccccceEEEeccCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ----------ETFTRISGYCEQND 961 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~d 961 (1436)
..+|+++ +.+.+||+++|+||||||||||+++|+|...+ ..|.|.+.|..... ..+++.++++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 99999999999999999999999999997654 36888888854211 12345677777754
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 038815 962 IHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1041 (1436)
Q Consensus 962 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~ 1041 (1436)
. ...+.+.-.. ....+.+.....+ .+.++=...+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 1222221000 0000111111111 11110001135799999 899999 578877
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCCHHHHHHhhh
Q 038815 1042 MDEPTSGLDARAAAIVMRTVKNTVE--TGR-----TVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1042 lDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~t~Hqps~~if~~FD~ 1088 (1436)
|+|||+.....+.+.++++.+ .|. ||++++|+.+..+ .|+
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i---~d~ 235 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPI---GDE 235 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHH---HHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChh---hhh
Confidence 999999999999999999874 477 8999999988443 555
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-14 Score=168.77 Aligned_cols=143 Identities=20% Similarity=0.159 Sum_probs=95.6
Q ss_pred Eeece-EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC--C--CCeeEEE-EEEcCeecccccccceEEEeccCCCCCCCC
Q 038815 894 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--T--GGYITGS-ITISGYLKKQETFTRISGYCEQNDIHSPLV 967 (1436)
Q Consensus 894 iL~~v-s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~--~--~~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 967 (1436)
.|+++ +|.+++|++++|+||||||||||++.|++.. . .|...|. |++++.... .++.++++.|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 35555 5899999999999999999999999999854 2 1112356 788875321 12234445554332221
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCCcc
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1040 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-------~~p~il 1040 (1436)
++.|++.+. +. --|.+|++++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 333332211 00 01456777777777777 689999
Q ss_pred eecCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEecCCC
Q 038815 1041 FMDEPTSGLDARA------------AAIVMRTVKNTVE-TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1041 ~lDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~t~Hqps 1079 (1436)
++||||+++|+.. ...+++.|+++++ .|.|||+|+|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 4899999999754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-14 Score=155.22 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---C-CcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS---L-KVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~---~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
+-+++|++++|+||||||||||+++|+|...+. . ...|.|.+++.+. ...+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 569999999999999999999999999954431 0 1245777777542 112345566666555554 7777765
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHH-HcCCcccccccccCcccCCCCHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK-VLGLDICADTLVGDEMIRGISGG 340 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgL~~~~~t~vg~~~~rgLSGG 340 (1436)
+..... ..+. . .........++ .+.-
T Consensus 96 ~~~~~~-------------~~~~-------------~--------~~~~~~~~~~~~~~~~------------------- 122 (231)
T 4a74_A 96 VARAFN-------------SNHQ-------------M--------LLVQQAEDKIKELLNT------------------- 122 (231)
T ss_dssp EEECCS-------------HHHH-------------H--------HHHHHHHHHHHHHTTS-------------------
T ss_pred EEecCC-------------hHHH-------------H--------HHHHHHHHHHHHhccc-------------------
Confidence 532110 0000 0 00000111111 0000
Q ss_pred HHHHHhhhhhhhhheeCCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh----hHHhhcCeEE
Q 038815 341 QKRRVTTGPALALFMDEISNGLDSST------------TFQIVNSIRQNIHILNGTAVISLLQPAP----ETYDLFDDII 404 (1436)
Q Consensus 341 qrkRvsia~a~vlllDEptsgLDs~t------------~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~lfD~vi 404 (1436)
...+.++++||||++||+.. ..++++.|+++++..+.|+| .++|... .+...+|.++
T Consensus 123 ------~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi-~vtH~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 123 ------DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQANGGHILAHSATLRV 195 (231)
T ss_dssp ------SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEE-EEEECC---------CCSEEE
T ss_pred ------CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEE-EEeecccCcchhhHhhceEEE
Confidence 12467899999999999841 23788888887765555554 4677443 4888999999
Q ss_pred EecCC
Q 038815 405 LLSDG 409 (1436)
Q Consensus 405 lL~~G 409 (1436)
.|++|
T Consensus 196 ~l~~~ 200 (231)
T 4a74_A 196 YLRKG 200 (231)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99875
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-13 Score=158.88 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
...+|++++|+|||||||||||++|+|..... ..|.|...+.+.. .......+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999964311 1244433222211 111112233333322111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~ 1060 (1436)
.++..+ +||++|..+|++|++|||| |..+...
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 122222 8999999999999999999 6665444
Q ss_pred HHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1061 VKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1061 l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.+++.+|.||++|+|+++.. +.+|+
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~~--~~~dR 239 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSAA--KTIDR 239 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSHH--HHHHH
T ss_pred HHHHHhcCCEEEEEEccChHH--HHHHH
Confidence 344466799999999998753 77787
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-13 Score=166.36 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=103.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhh
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSA 264 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 264 (1436)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 568999999999999999999999999998765 232 12345566531 12222210
Q ss_pred hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHH
Q 038815 265 RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344 (1436)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkR 344 (1436)
.. +. +. +. +...|+....+ ..+..|||||+||
T Consensus 330 ---~~-----------------g~----~~------------------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 ---SW-----------------GM----DF------------------EE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp ---TT-----------------SC----CH------------------HH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred ---Hc-----------------CC----CH------------------HH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 00 00 00 01 12345544333 3456799999999
Q ss_pred Hhhhhhh-----hhheeCCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hhHHhhcCeEE
Q 038815 345 VTTGPAL-----ALFMDEISNGLDSS-----TTFQIVNSIRQNIHILNGTAVISLLQPA----------PETYDLFDDII 404 (1436)
Q Consensus 345 vsia~a~-----vlllDEptsgLDs~-----t~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~lfD~vi 404 (1436)
+.++++. ++++| ||+|||.. .+..+.+.++.+.+ .+.|++++ .|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv-sh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT-NTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE-EECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE-ECcccccCcccccCcccceeeeEEE
Confidence 9997654 69999 99999999 89899998888754 45566654 4444 66778999999
Q ss_pred EecCCe
Q 038815 405 LLSDGL 410 (1436)
Q Consensus 405 lL~~G~ 410 (1436)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-14 Score=154.41 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=95.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC--CCCCHHHHHHhhhh
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI--GEMTVRETLAFSAR 265 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 265 (1436)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998643 378999998766 66899998765321
Q ss_pred hccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHH---
Q 038815 266 CQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQK--- 342 (1436)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqr--- 342 (1436)
.. ... + .......++.+++.+..+. ....+|+|||
T Consensus 61 ~~---------~~~-------------~---------------~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---------DAF-------------D---------------LALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp SG---------GGB-------------C---------------HHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred Ch---------hhh-------------h---------------HHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 00 000 0 0112345566666654332 2446899864
Q ss_pred -HHHhhhhhh-----hhheeCCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 038815 343 -RRVTTGPAL-----ALFMDEISNG-------LDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391 (1436)
Q Consensus 343 -kRvsia~a~-----vlllDEptsg-------LDs~t~~~i~~~l~~~~~~~~~t~ii~~~q 391 (1436)
||++++++. ++++||||++ ||+....++.+.+++.....+.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677776654 4888999999 999999999998877544345555544443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-14 Score=153.61 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=91.3
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC---CCeeEEEEEEcCeec-c-cccccceEEEeccCCCCCCCCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSITISGYLK-K-QETFTRISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~---~~~~~G~i~i~g~~~-~-~~~~~~~~gyv~Q~d~~~~~lT 968 (1436)
+|++ +.+.+|+.++|+|+||||||||++.|+|... ..+..|.+...+... . ...+....|+..+. .+...
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 5666 8899999999999999999999999999651 012334433221100 0 00000111211100 00000
Q ss_pred ---HHHHHHHhhh-hcC----------CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHH
Q 038815 969 ---VYESLLYSAW-LRL----------PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL 1033 (1436)
Q Consensus 969 ---v~E~l~f~a~-lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkR-l~ia~~L 1033 (1436)
.+..+..... .+. ...... ....+.+.++..++..+ .+++. ...+|+||||| +.+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHH
Confidence 1111111110 000 001111 12234455566665432 11211 24689999999 8999999
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1070 (1436)
+.+|.++++|||||++|......+++.|.++.+.|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998766654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-14 Score=154.60 Aligned_cols=139 Identities=20% Similarity=0.207 Sum_probs=89.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
|++++|+||||||||||+++|+|... .+| |.++|+...+ ...++.+||++|+. .... +++ +++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccC
Confidence 78999999999999999999999653 246 7777765532 24567899999975 1111 111 1111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCCcceecC--CCCCCCHHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1057 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl-~ia~---~L~~~p~il~lDE--PTsgLD~~~~~~i 1057 (1436)
+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 69 --~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 69 --P-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp --C-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred --C-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 0 00011234433 236999999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHHcCCEEEE---E-ecCCC
Q 038815 1058 MRTVKNTVETGRTVVC---T-IHQPS 1079 (1436)
Q Consensus 1058 ~~~l~~~~~~g~tvi~---t-~Hqps 1079 (1436)
.+++ +...++|+ + +|+++
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP 150 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC
T ss_pred HHHH----hCCCcEEEEEeecCCCCc
Confidence 5444 44445553 2 38865
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-14 Score=164.67 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=104.5
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCC-CCcccE-EEEcCccCCCCCccceEEEEcCCCCCCCCC
Q 038815 180 ILKDV-SGIIRPGSMTLLLGPPSSGKTTLLLALAGKL--DSS-LKVSGR-VTYNGHNMDEFEPQRVAAYISQHDNHIGEM 254 (1436)
Q Consensus 180 iL~~v-s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 254 (1436)
.|+++ +|.+++|++++|+||||||||||++.|+|.. +|+ ....|+ |.+++.+. + ..+.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999987 443 011368 88888753 1 23456778887765554
Q ss_pred CHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCccc
Q 038815 255 TVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMI 334 (1436)
Q Consensus 255 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 334 (1436)
++.||+.+.... . + +. . ...++.+ . ..+
T Consensus 195 ~v~~ni~~~~~~-------~-----~--------------~~-----------~----~~~l~~~------~-----~~~ 222 (349)
T 1pzn_A 195 EVLKHIYVARAF-------N-----S--------------NH-----------Q----MLLVQQA------E-----DKI 222 (349)
T ss_dssp HHGGGEEEEECC-------S-----H--------------HH-----------H----HHHHHHH------H-----HHH
T ss_pred HHhhCEEEEecC-------C-----h--------------HH-----------H----HHHHHHH------H-----HHH
Confidence 777776653210 0 0 00 0 0001100 0 122
Q ss_pred CCCCHHHHHHHhhhhhhhhheeCCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 335 RGISGGQKRRVTTGPALALFMDEISNGLDSST------------TFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 335 rgLSGGqrkRvsia~a~vlllDEptsgLDs~t------------~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
+.+|||| .++.++++||||++||+.. ..++++.|+.+++..+.|+| .+.|...+....+++
T Consensus 223 ~~lS~G~------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvi-i~~h~~~~~~~~~~~ 295 (349)
T 1pzn_A 223 KELLNTD------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQARPDAFFGD 295 (349)
T ss_dssp HHSSSSS------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEE-EEEECC---------
T ss_pred HHhcccc------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEE-EEcccccccccccCC
Confidence 3589998 5688999999999999852 35667777777765454554 466666555556667
Q ss_pred EEEecCCeEEEecCh
Q 038815 403 IILLSDGLIVYLGPR 417 (1436)
Q Consensus 403 vilL~~G~iv~~G~~ 417 (1436)
......|+++.+++.
T Consensus 296 ~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 296 PTRPIGGHILAHSAT 310 (349)
T ss_dssp ------CCCCCTTCS
T ss_pred ccccCCcceEeecCc
Confidence 777788887766543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-14 Score=178.09 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=106.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCcccEEEEcCccCCC------CCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLDS-SLKVSGRVTYNGHNMDE------FEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~~-~~~~~G~I~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 9999999988521 12346789999999999999999999876432
Q ss_pred ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHh
Q 038815 267 QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346 (1436)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvs 346 (1436)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 21100 0011 01111
Q ss_pred h-----hhhhhhheeCC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----hHHhh--------cCeE
Q 038815 347 T-----GPALALFMDEI------SNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAP----ETYDL--------FDDI 403 (1436)
Q Consensus 347 i-----a~a~vlllDEp------tsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~l--------fD~v 403 (1436)
+ ..|.++++||| |+|||+....++.+.++++....++.+++.++|+.+ ++.++ ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 1 24678999999 999999999999999998755444566666666654 22222 2457
Q ss_pred EEecCCeEEEecChHHHHH
Q 038815 404 ILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~~ 422 (1436)
+++.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887654443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-14 Score=155.18 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHhhhhhccC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRETLAFSARCQGV 269 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 269 (1436)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 79 999987764432 246789999874 111 1111 00000
Q ss_pred CCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhh-h
Q 038815 270 GSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT-G 348 (1436)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsi-a 348 (1436)
.++ +...+..+|. +...+|||||+++.. .
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 000 0000123332 334699999988833 3
Q ss_pred h--------hhhhheeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhhHHhhcCeEEEecCCeEEEec
Q 038815 349 P--------ALALFMDE--ISNGLDSSTTFQIVNSIRQNIHILNGTAVI---SLLQPAPETYDLFDDIILLSDGLIVYLG 415 (1436)
Q Consensus 349 ~--------a~vlllDE--ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~lfD~vilL~~G~iv~~G 415 (1436)
+ +.++++|| |+..+|......+.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 3 44899999 898899876555544443 2 345553 3336543 3567888888899988653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.5e-14 Score=167.09 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=88.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.+++|+|+.| +|+|+||||||||+++|+|........|.+.+++. .....+.++|+.|++...+.+||.|
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~---~t~~~~~i~~v~q~~~~~~~Ltv~D 94 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK---KTVQVEQSKVLIKEGGVQLLLTIVD 94 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCc---cceeeeeEEEEEecCCcccceeeee
Confidence 45899999998 99999999999999999996531111222222221 1112356899999988888899999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC---cceecCCC-C
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPT-S 1047 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~---il~lDEPT-s 1047 (1436)
++.+..... .... ...+.+.+ + ..++.+.++|+.||++++.+|+ +|++|||| +
T Consensus 95 t~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 95 TPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp CC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred chhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 987754321 0010 01111111 0 1356677889999999999999 89999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 038815 1048 GLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1048 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1078 (1436)
|||+... +.++.+.. +.+||+++|.-
T Consensus 152 ~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp SCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9998773 34445543 77888888753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=170.45 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHhhh----hhhhhheeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-ecC
Q 038815 335 RGISGGQKRRVTTG----PALALFMDEISNGLDSSTTFQIV-NSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSD 408 (1436)
Q Consensus 335 rgLSGGqrkRvsia----~a~vlllDEptsgLDs~t~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil-L~~ 408 (1436)
..+|+|++|++.|+ .+.++||||||+|||+.....+. ..++.+.+..+.++++ ++|.. ++.+++|+.-- +.+
T Consensus 734 stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~-vTH~~-el~~l~~~~~~~v~n 811 (918)
T 3thx_B 734 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF-VTHYP-PVCELEKNYSHQVGN 811 (918)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHTTTTEEE
T ss_pred HHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE-EeCcH-HHHHHHhhcccceEE
Confidence 35899999999995 56689999999999999999987 5666665434555554 56664 45566665421 334
Q ss_pred CeEEE
Q 038815 409 GLIVY 413 (1436)
Q Consensus 409 G~iv~ 413 (1436)
+++.+
T Consensus 812 ~~~~~ 816 (918)
T 3thx_B 812 YHMGF 816 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-13 Score=171.35 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc------cccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK------QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+||+|||||||||||++|+|...+ ..+|.|.++|.+.. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998542 14799999997631 13467889999999999999999999976532210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC------CCCCCHHHHH
Q 038815 982 PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1055 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP------TsgLD~~~~~ 1055 (1436)
. .. .++| ++++.++++...+|+++++||| |+|||+....
T Consensus 127 ~---------------------~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G---------------------EG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C---------------------SS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C---------------------Cc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0111 1222222333458999999999 9999999999
Q ss_pred HHHHHHHHHHHc--CCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVET--GRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~~--g~tvi~t~Hqps 1079 (1436)
.+.+.++++.+. +.++++++|+..
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 667888899865
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-13 Score=180.44 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEE-EEcCC
Q 038815 176 KHLTILKDVSGIIRP-------GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAA-YISQH 247 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~-------Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~ 247 (1436)
+...+++|+++.+++ |++++|+||||||||||||++ |.+.+ ...+| ||||+
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~ 825 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAE 825 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESS
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccC
Confidence 345799999999987 999999999999999999999 98642 11234 89997
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
.. .+||.|++.. + . |+.+..+
T Consensus 826 ~~---~l~v~d~I~~--r---i--------------------------------------------------g~~d~~~- 846 (1022)
T 2o8b_B 826 VC---RLTPIDRVFT--R---L--------------------------------------------------GASDRIM- 846 (1022)
T ss_dssp EE---EECCCSBEEE--E---C--------------------------------------------------C-------
T ss_pred cC---CCCHHHHHHH--H---c--------------------------------------------------CCHHHHh-
Confidence 52 4566555421 0 0 0000000
Q ss_pred cccCcccCCCCHHHHHHHhhhh-----hhhhheeCCCCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 328 LVGDEMIRGISGGQKRRVTTGP-----ALALFMDEISNGLDSSTT-FQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~-----a~vlllDEptsgLDs~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
.....+|+|+++ +++++ +.+++||||++|+|+... ..+...++.+.+..+. +++.++|..+.+..++|
T Consensus 847 ----~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~-~vl~~TH~~el~~~~~d 920 (1022)
T 2o8b_B 847 ----SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKC-RTLFSTHYHSLVEDYSQ 920 (1022)
T ss_dssp -------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCC-EEEEECCCHHHHHHTSS
T ss_pred ----hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHhCC
Confidence 011235666654 66644 457999999999999885 4467777777653344 45557888888888999
Q ss_pred eEEEecCCeEE--EecChH
Q 038815 402 DIILLSDGLIV--YLGPRE 418 (1436)
Q Consensus 402 ~vilL~~G~iv--~~G~~~ 418 (1436)
++.++ +|++. +.|+.+
T Consensus 921 ~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 921 NVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp CSSEE-EEEEEEC------
T ss_pred cceee-cCeEEEEEecCcc
Confidence 99887 58887 455543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-13 Score=148.67 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=96.3
Q ss_pred EEeeceEe-eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccccccc---ceEEEeccCCCCCCCCC
Q 038815 893 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFT---RISGYCEQNDIHSPLVT 968 (1436)
Q Consensus 893 ~iL~~vs~-~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~---~~~gyv~Q~d~~~~~lT 968 (1436)
..|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+....... +..++..|..... .++
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 35788885 899999999999999999999999997432 1123343333211100000 0011111100000 000
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--cceecCCC
Q 038815 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1046 (1436)
Q Consensus 969 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~--il~lDEPT 1046 (1436)
.++.....++ ...+ ....|.+|.++...+.....+|+ ++++||||
T Consensus 87 ------------------------~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------------------IIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------------------EEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------------------EEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000000000 0000 12359999988888887778999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCCC-------HHHHHHhhh
Q 038815 1047 SGL--DARAAAIVMRTVKNTVE-TGRTVVCTIHQPS-------IDIFESFDE 1088 (1436)
Q Consensus 1047 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps-------~~if~~FD~ 1088 (1436)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+-+..|.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~ 185 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADG 185 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeE
Confidence 888 99999999999999875 4899999999973 235555565
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-13 Score=150.88 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=85.5
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCH----HHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTV----YESLLY 975 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv----~E~l~f 975 (1436)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|+...++.+|+ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999976422367899998876432 234557888886544333333 222211
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1055 (1436)
... . .+.| +++ ..+++..+++++|| ||+.++.
T Consensus 90 ~~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FGN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TTE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hhc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 100 0 0111 111 34556668999999 9999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1056 IVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1056 ~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
.+.+.+. .+.||++++|++.
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 4889999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-13 Score=161.29 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred eeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 895 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 895 L~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
|++||+.+++|++ +||+||||||||||+|+|+|..- .|.-. ... .....++.++|++|++.+.+.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 12111 110 112234578999999888888999999
Q ss_pred HHHhhhhcCCCCCCHH--------HHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHH
Q 038815 973 LLYSAWLRLPPEVDSE--------TRKMFIEEIMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVEL 1033 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~--------~~~~~v~~~l~~l-~L~----~~~~~~----vg--~~~~~~lSgGqrkRl~ia~~L 1033 (1436)
+.|+.. .+.. ......++.++.. ++. ...|+. +. .+...+++..+ +.|+++|
T Consensus 103 ~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 103 VGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp ECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 876432 1111 1122344555544 443 122322 11 12224677777 7899999
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~t~Hq 1077 (1436)
..+++|+++||||..|.......+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999988899999987 77779888887753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-13 Score=147.42 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred ceeeeceEE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 178 LTILKDVSG-IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 178 ~~iL~~vs~-~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.|.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 456788885 89999999999999999999999999887543 56666544321 11
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
.+........ +. ..+ +.... ... . .+...+.++ . .. ....
T Consensus 64 ~~~~~~~~~~-~~--~~~---~~~~~-~~~-~-----------------------~~~~~~~~~-~----~~----~~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NW--DFE---EYIEK-KLI-I-----------------------IDALMKEKE-D----QW----SLVN 103 (235)
T ss_dssp HHHHHHHHHT-TC--CCG---GGBTT-TEE-E-----------------------EECCC-----C----TT----BCSS
T ss_pred HHHHHHHHHh-cc--hHH---HHhhC-CEE-E-----------------------EeccccccC-c----ee----eecC
Confidence 1111100000 00 000 00000 000 0 000000001 0 00 0123
Q ss_pred CCHHHHHHHhh-----hhhh--hhheeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hhHHhh
Q 038815 337 ISGGQKRRVTT-----GPAL--ALFMDEISNGL--DSSTTFQIVNSIRQNIHILNGTAVISLLQPA--------PETYDL 399 (1436)
Q Consensus 337 LSGGqrkRvsi-----a~a~--vlllDEptsgL--Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~l 399 (1436)
.|.+|.++... ..+. ++++||||+++ |+....++++.|+++++..+ .+++.++|.. +.+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchhee
Confidence 58888876655 3677 99999999888 99889999999999876544 5555567776 568899
Q ss_pred cCeEEEecCC
Q 038815 400 FDDIILLSDG 409 (1436)
Q Consensus 400 fD~vilL~~G 409 (1436)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-12 Score=169.97 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=95.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
+..+++|+++. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| +++.+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCH
Confidence 35689999999 999999999999999999999999964211 012 11111 1123445444 4555566
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
.|++..+. ..
T Consensus 660 ~d~l~~~~----------------------------------------------------------------------st 669 (800)
T 1wb9_A 660 ADDLASGR----------------------------------------------------------------------ST 669 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhh----------------------------------------------------------------------hh
Confidence 66554311 12
Q ss_pred CCHHHHHHHhh----hhhhhhheeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTT----GPALALFMDEISNGLDSSTTFQI-VNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsi----a~a~vlllDEptsgLDs~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
+|+|+++...+ ..+.+++||||++|+|+.....+ ...++.+.+..+.++++ ++|.. +..+++|++..+.+|++
T Consensus 670 f~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~-~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 670 FMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF-ATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE-ECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE-EeCCH-HHHHHhhhhhceEEEEE
Confidence 34455444333 35678999999999998777665 56666665433455555 56665 44568898877888887
Q ss_pred EEec
Q 038815 412 VYLG 415 (1436)
Q Consensus 412 v~~G 415 (1436)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-12 Score=147.55 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=44.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
++|+|+| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i 64 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI 64 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc
Confidence 4899999 8999999999999999999999999998752 179999999765
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-13 Score=142.38 Aligned_cols=80 Identities=19% Similarity=0.081 Sum_probs=67.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
.++.+++++|+.+++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+|
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 3456899999999999999999999999999999999999 76 899999998874221111 2789988778 899
Q ss_pred HHHHHHh
Q 038815 256 VRETLAF 262 (1436)
Q Consensus 256 V~E~l~f 262 (1436)
|.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-12 Score=166.09 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=86.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-SSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 255 (1436)
+..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCC
Confidence 35789999998 99999999999999999999999753 33 45431 1 01234666665 445555
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.|++.+
T Consensus 628 ~~d~l~~------------------------------------------------------------------------- 634 (765)
T 1ewq_A 628 ASDDLAG------------------------------------------------------------------------- 634 (765)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHHHHHh-------------------------------------------------------------------------
Confidence 5555432
Q ss_pred CCCHHHHHHHhhhh-------hhhhheeCC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 336 GISGGQKRRVTTGP-------ALALFMDEI---SNGLDSSTT-FQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 336 gLSGGqrkRvsia~-------a~vlllDEp---tsgLDs~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
++|+|+++++.+++ +.+++|||| |++||..+. ..+++.|++ .+.++++ ++|..+. .+++
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~~l-~~~~ 704 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYFEL-TALG 704 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCHHH-HTCC
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCHHH-HHhh
Confidence 46778888877754 447999999 999998875 578888765 2555555 5666443 3444
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.3e-12 Score=128.50 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=61.8
Q ss_pred CcccCCCCHHHHHHHhhh------h-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 038815 331 DEMIRGISGGQKRRVTTG------P-----ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia------~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~l 399 (1436)
+..+..|||||||||+|| + |.+++|||||+|||+.+...+.+.++++.+ .+.|+++ ++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEE-EEChH-HHHHh
Confidence 456778999999999875 2 457999999999999999999999998654 3455554 56665 67889
Q ss_pred cCeEEEe--cCCe
Q 038815 400 FDDIILL--SDGL 410 (1436)
Q Consensus 400 fD~vilL--~~G~ 410 (1436)
+|++++| .+|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 9999999 4564
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-13 Score=149.61 Aligned_cols=154 Identities=13% Similarity=0.017 Sum_probs=94.3
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-cccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+..+|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367999999999999999999999999732 47899998643211 11234577777543 456888888765432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHH
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~ 1059 (1436)
....... ..++.+++..++....+. +.+ +..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000111111111111100 111 2459999999999999999999887 68877777777
Q ss_pred HHHHHHHcCCEEEEEec
Q 038815 1060 TVKNTVETGRTVVCTIH 1076 (1436)
Q Consensus 1060 ~l~~~~~~g~tvi~t~H 1076 (1436)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77655333334444443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-11 Score=145.80 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHhhhh---------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 038815 335 RGISGGQKRRVTTGP---------ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL 405 (1436)
Q Consensus 335 rgLSGGqrkRvsia~---------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil 405 (1436)
..||||||||++||+ +.+++|||||++||+.....+.+.|++... .++.++.++|. .+..+.+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999954 447999999999999999999999988632 23444546666 567789999999
Q ss_pred ec
Q 038815 406 LS 407 (1436)
Q Consensus 406 L~ 407 (1436)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-12 Score=144.95 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=97.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH----HHHHH
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV----RETLA 261 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 261 (1436)
-..++|++++|+||||||||||+++|+|..+|+ ..+|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999998775432 23457899998766666665 44443
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
+.....+. .+ ..++.++
T Consensus 89 ~~~~~yg~----------~~----------------------------~~v~~~l------------------------- 105 (219)
T 1s96_A 89 VFGNYYGT----------SR----------------------------EAIEQVL------------------------- 105 (219)
T ss_dssp ETTEEEEE----------EH----------------------------HHHHHHH-------------------------
T ss_pred HHhccCCC----------CH----------------------------HHHHHHH-------------------------
Confidence 32111100 00 0011111
Q ss_pred HHHHhhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 342 KRRVTTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 342 rkRvsia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
....+++|| ||+.++.++.+.+. .+.+|+.+.|...++.+ ++ +.+| .++.+++.
T Consensus 106 ------~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 106 ------ATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp ------TTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred ------hcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence 113689999 99999999988775 34566667777766655 43 7778 67777776
Q ss_pred HHH
Q 038815 422 DFF 424 (1436)
Q Consensus 422 ~~F 424 (1436)
..+
T Consensus 160 ~rl 162 (219)
T 1s96_A 160 KRM 162 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.5e-13 Score=152.41 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---------QRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999887 8999999998754321 23588999999889999999999
Q ss_pred Hhh
Q 038815 261 AFS 263 (1436)
Q Consensus 261 ~f~ 263 (1436)
.++
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-12 Score=148.71 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=90.1
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCee-EEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 567765 79999999999999999999999999643 22 588876664432 22344567777741
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+|+. ...+ +.+|+.+|..+|++|++|||| |..
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1053 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+.. .+++. +..|.+|++|+|..+ +.+.+|+
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~r 252 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHR 252 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHH
Confidence 644 34443 456999999999965 5666776
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-14 Score=167.59 Aligned_cols=156 Identities=14% Similarity=0.112 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC------CeeEEEEEEcCeecccc------------------cccceEEEe---c
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGSITISGYLKKQE------------------TFTRISGYC---E 958 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 958 (1436)
++++|+|+|||||||||+.|.|...+ ....|+|.++|.+.... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986521 12468888888764321 233446666 5
Q ss_pred cCCCCCCCCCHHHHHHHhh--hh-cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 038815 959 QNDIHSPLVTVYESLLYSA--WL-RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1035 (1436)
Q Consensus 959 Q~d~~~~~lTv~E~l~f~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~ 1035 (1436)
|+....+..+|.|+..++. .+ +.-...+...+...++.+++.+++.+..+.. .++|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 6655555677777664321 00 0000000000011122233334444444433 2589999999999999999
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
+|+++ ||| ..+.+.|+++. .+.||++++|.|.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 77888888874 5889999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=127.17 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~----~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+++..|+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i 136 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKI 136 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEE
Confidence 35799999999999999974 4699999999999999999999999999865 57899999985 455666653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=139.66 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=95.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
-+++|++++|+||||||||||++.+++... .|++ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 478999999999999999999999998653 4554 2344321 1345778876552 1 1111 010
Q ss_pred ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHh
Q 038815 267 QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVT 346 (1436)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvs 346 (1436)
...+.. .+ ....+.+++.+++.+..+ ..+..+|+||++++.
T Consensus 88 ~~~g~~-------------------~~---------------~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 88 HALGAH-------------------LS---------------AEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGLK 128 (279)
T ss_dssp HHHHTT-------------------SC---------------HHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHHH
T ss_pred HHHHhh-------------------cC---------------hhhhhhccCceEEeecCC-----CCcccCCHHHHHHHH
Confidence 000000 00 011344567777765443 345679999999885
Q ss_pred h--hhhhhhheeCCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 347 T--GPALALFMDEISN--GLDSSTT---FQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 347 i--a~a~vlllDEpts--gLDs~t~---~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
- ..+.++++||||+ ++|.... .++++.|+++++..+.|+|+ ++|....
T Consensus 129 ~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~~ 183 (279)
T 1nlf_A 129 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASKG 183 (279)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC---
T ss_pred HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCCc
Confidence 4 3567899999999 9997443 78888998887655555555 5665543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=128.20 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=86.8
Q ss_pred EeeceE-eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHH
Q 038815 894 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 894 iL~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++++. ++. .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~-----------------~~~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDT-----------------EGG----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEES-----------------SCC----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEEC-----------------CCC----CCH-HH
Confidence 466666 5899999999999999999999999998 221 12333332 111 111 11
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CCcceecCCCCCC
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1049 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--qrkRl~ia~~L~~~-p~il~lDEPTsgL 1049 (1436)
+.- ..+. ...+. +++++.+.+ ...+++ +++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 123333 46788899999986 9999999999999
Q ss_pred CHH--------HHHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1050 DAR--------AAAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1050 D~~--------~~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
|.. ....+++.|++++++ |.|||+++|...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 973 335567778888764 999999999764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-12 Score=147.15 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---CCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh-
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL- 979 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~La---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l- 979 (1436)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.++++.|+....+..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8654 44577777664321 11223345566777777888999998764210
Q ss_pred -----cCCCCCCHHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCCc
Q 038815 980 -----RLPPEVDSETRKMFIEEIMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1039 (1436)
Q Consensus 980 -----r~~~~~~~~~~~~~v~~~l~~--l~------------L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L-~~~p~i 1039 (1436)
... ..+... ..++.+.+. ++ +..+.+.. +..+|| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 011111 112222211 11 11112222 245888 65 677 899999
Q ss_pred ceec----CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1040 IFMD----EPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1040 l~lD----EPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
++|| |||+|||..+...+.+.++++.+
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999 99999999999999888887644
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-13 Score=160.02 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=88.3
Q ss_pred eeceEeeEeC--CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeE----EEEEEcC----eecc--cccccceEEEeccCCC
Q 038815 895 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GSITISG----YLKK--QETFTRISGYCEQNDI 962 (1436)
Q Consensus 895 L~~vs~~i~~--Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~----G~i~i~g----~~~~--~~~~~~~~gyv~Q~d~ 962 (1436)
.+.|+..|++ |+.++|+||||||||||+++|+|.... .+ |.|.+++ .+.. ...+ +.++|++|+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 4578999999 999999999999999999999997652 34 5554431 1100 0001 11222222110
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCcce
Q 038815 963 HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIF 1041 (1436)
Q Consensus 963 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-~~p~il~ 1041 (1436)
.+ ..|+.||+.+. + .+..+.. ...+|+|+++|..+++++. .+|++++
T Consensus 235 ~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lll 282 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTI 282 (365)
T ss_dssp HH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEE
T ss_pred HH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEE
Confidence 00 01111111000 0 0001111 1235677788888888775 5999999
Q ss_pred ecC---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1042 MDE---PT------SGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1042 lDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
||| |+ +++|...+..+.+.|+++.+ .|.+||+++|.
T Consensus 283 LdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 283 LLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp EEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred ECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 999 65 68999999999999998765 48899998874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-11 Score=143.15 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=85.7
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc-CeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS-GYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
+++++.. .+|++++|+||||||||||+|+|+|.... ..+|+|.++ |.... .+..+.++|++|+..++++.||+|.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 3444443 47999999999999999999999997641 346888887 65432 3445678999999888888899883
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1033 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L 1033 (1436)
. + ...+.++..+.+.++++.+++.+..|... .++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 12445556667888999999988887763 5799 999999999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-11 Score=145.28 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEc-CCCCC--CCCCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYIS-QHDNH--IGEMT 255 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 255 (1436)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999987 999999985311111 346789999 76543 37789
Q ss_pred HHHHHHhhh
Q 038815 256 VRETLAFSA 264 (1436)
Q Consensus 256 V~E~l~f~~ 264 (1436)
++++|..+.
T Consensus 241 ~~~~i~~~l 249 (361)
T 2gza_A 241 AATLLRSCL 249 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-11 Score=142.55 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=91.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec-ccccccceEEEec-cCCCCCCCCCHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK-KQETFTRISGYCE-QNDIHSPLVTVYE 971 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~-~~~~~~~~~gyv~-Q~d~~~~~lTv~E 971 (1436)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999997653 469999998532 1122456778887 54321
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222345566666667899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1052 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+.+.|+.+.....|++.++|..+ .-+..|+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~R 295 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFER 295 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHH
Confidence 3455666666444458899999976 4566776
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-13 Score=143.15 Aligned_cols=167 Identities=11% Similarity=0.047 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhccCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVG 270 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 270 (1436)
|++++|+||||||||||+++|++. . +|.+.++|.++.+. ...++++|.+...+.+|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999982 2 78999998765332 22456677654455668888887754321100
Q ss_pred CccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC--CHHHHHHHhh-
Q 038815 271 SRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI--SGGQKRRVTT- 347 (1436)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL--SGGqrkRvsi- 347 (1436)
.....+ .... ... . . +..+.+ |+|+++|+.+
T Consensus 73 ~~~~il---------d~~~---~~~------------~---~-------------------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 73 QNDVVL---------DYIA---FPD------------E---A-------------------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp TCEEEE---------ESCC---CHH------------H---H-------------------HHHHHHHHHHCSSEEEEEE
T ss_pred CCcEEE---------eecc---CHH------------H---H-------------------HHHHHHHHhcccCCCeEEE
Confidence 000000 0000 000 0 0 001123 7787777655
Q ss_pred ----------hhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhhHHhhcCeEEEecCCeEEEecC
Q 038815 348 ----------GPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQP-APETYDLFDDIILLSDGLIVYLGP 416 (1436)
Q Consensus 348 ----------a~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~lfD~vilL~~G~iv~~G~ 416 (1436)
.|+....+|+ +||+..... .+.++.+.. .+.++ +..+|. .+++.+.+|+|+ ++|+++..|+
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~i-i~tsh~~~~~~e~~~~~i~--~~g~~~~~~~ 178 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYF-YNTSHLQPTNLNDIVKNLK--TNPRFIFCMA 178 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSE-EECSSSCGGGHHHHHHHHH--HCGGGSCC--
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEE-EeCCCCChhhHHHHHHHHh--hCCcEEEeec
Confidence 2333356673 899987777 777766532 23444 445565 778999999998 9999999998
Q ss_pred hHHH
Q 038815 417 RELV 420 (1436)
Q Consensus 417 ~~~~ 420 (1436)
++-+
T Consensus 179 ~~~~ 182 (189)
T 2bdt_A 179 GDPL 182 (189)
T ss_dssp ----
T ss_pred CCch
Confidence 7654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-11 Score=145.62 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=52.4
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
.+++.+++.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~ 84 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEG 84 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC----
T ss_pred EecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecC
Confidence 44566666678999999998 99999999999999999999764311 2222222111 11124578999998
Q ss_pred CCCCCCCHHHHHHhhh
Q 038815 249 NHIGEMTVRETLAFSA 264 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~ 264 (1436)
..++.+||.||+.++.
T Consensus 85 ~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 85 GVQLLLTIVDTPGFGD 100 (418)
T ss_dssp --CEEEEEEECC----
T ss_pred Ccccceeeeechhhhh
Confidence 8888999999987753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-11 Score=148.40 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=101.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
+++++.+++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.++.-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 79999999999999999999999999999999642 23343321 22344666666541 11122221100
Q ss_pred hhhhcCCCCCCHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 976 SAWLRLPPEVDSETRK--MFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
...............+ +.++.++..+++. ......+|+|++||+.+|++|+.+|.||++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111000 0111122222332 111357999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHHhhh
Q 038815 1054 AAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1054 ~~~i~~~l~~~~-~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+ ..++.+++.. +.|.+++.++..-...+-++|+.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 6 4444454443 45778777766556667777776
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=144.90 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=63.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~l-SgGqrkRl~ia~~L~~~p--~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ |.||||++|+|. +....|+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~ 466 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHH 466 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCE
Confidence 467 999999999999999999 99999999999999999999999999987 899999999974 5566787
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-12 Score=136.48 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeecc------ccccc-ceEE----EeccCCCCCCCCCHHHHH
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLKK------QETFT-RISG----YCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~d~~~~~lTv~E~l 973 (1436)
++++|+|+||||||||++.|+|.... +...|.|.++|.+.. .+.++ +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999996432 233699999997622 12344 3466 788876544 111
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcc-------eecCC
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1045 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il-------~lDEP 1045 (1436)
. ..+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 111 11134555555 43 24777753 59999999999999999999874 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHcCC
Q 038815 1046 TSG---LDARAAAIVMRTVKNTVETGR 1069 (1436)
Q Consensus 1046 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1069 (1436)
..+ +|......+.+.+.+....|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766555543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-11 Score=121.42 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=37.8
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCCH
Q 038815 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT-VVCTIHQPSI 1080 (1436)
Q Consensus 1034 ~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~t~Hqps~ 1080 (1436)
+.+|++|++|||++ +|...+..+.+.+..+.++|++ +|+|+|.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 45799999999998 5555588899999988877888 8999996543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-13 Score=162.76 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=40.9
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----cEEEEc
Q 038815 180 ILKDVSGIIRP--GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVS----GRVTYN 228 (1436)
Q Consensus 180 iL~~vs~~i~~--Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~----G~I~~~ 228 (1436)
+.+.|+..|++ |+.++|+||||||||||+++|+|.++++ + |+|.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 777654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-11 Score=140.17 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccEEEEc-CccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-SSLKVSGRVTYN-GHNMDEFEPQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5566654 4899999999999999999999999998 76 9999987 765432 23457899999988899999988
Q ss_pred HHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCC
Q 038815 259 TLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGIS 338 (1436)
Q Consensus 259 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLS 338 (1436)
+ +. .+ +.+.+ .....+++++.+|+.+..|. ...++|
T Consensus 281 ~---~l--~~----------l~~~e------------------------~~~~~~e~l~~~gl~~f~~~-----~~~~lS 316 (358)
T 2rcn_A 281 F---GL--WH----------LEPEQ------------------------ITQGFVEFHDYLGHCKYRDC-----KHDADP 316 (358)
T ss_dssp C---CC--CC----------CCHHH------------------------HHHTSGGGGGGTTCSSSTTC-----CSSSCT
T ss_pred h---hh--cC----------CCHHH------------------------HHHHHHHHHHHcCCchhcCC-----CcccCC
Confidence 3 21 10 00000 11123345677788665554 345799
Q ss_pred HHHHHHHhhhhh
Q 038815 339 GGQKRRVTTGPA 350 (1436)
Q Consensus 339 GGqrkRvsia~a 350 (1436)
||+||++|+.+
T Consensus 317 -G~~~r~ala~g 327 (358)
T 2rcn_A 317 -GCAIREAVENG 327 (358)
T ss_dssp -TCHHHHHHHHT
T ss_pred -HHHHHHHHHhc
Confidence 99999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-11 Score=145.09 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=99.4
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------cc--ccceEEEeccCCCCCCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ET--FTRISGYCEQNDIHSPL 966 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~d~~~~~ 966 (1436)
+++|+.+++|++++|+|+||||||||++.|+|... ...|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 67899999999999999999999999999999653 225889997654321 11 24568999999888888
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCC-cceecC
Q 038815 967 VTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1044 (1436)
Q Consensus 967 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~-~~p~-il~lDE 1044 (1436)
.||++++.+...-. .+. -+++..|+.+.. ..+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998763211 000 011111221111 112223457788888664 4564 565555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEec
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIH 1076 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H 1076 (1436)
||+|.|+. +.++.+.+ .|.|.|+++|
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886554 23444433 3889999999
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-11 Score=127.46 Aligned_cols=79 Identities=20% Similarity=0.067 Sum_probs=64.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+.++++||+.+++|++++|+||||||||||+++|+|.. + .+|+|.++|.+.......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4699999997653211111 2789987777 899999
Q ss_pred HHHHh
Q 038815 972 SLLYS 976 (1436)
Q Consensus 972 ~l~f~ 976 (1436)
++.+.
T Consensus 94 ~l~~~ 98 (158)
T 1htw_A 94 ELEFM 98 (158)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 99653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-11 Score=138.79 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhh
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALA---GKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARC 266 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~La---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 266 (1436)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... .....+.++.|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 998776 8999888765321 1123345567777788889999999874321
Q ss_pred -ccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCc--ccc-------cccccCcccCC
Q 038815 267 -QGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLD--ICA-------DTLVGDEMIRG 336 (1436)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~-------~t~vg~~~~rg 336 (1436)
.+.+-..+ + .+. ..+ ..+.+.+....+ ... -..+.++.+..
T Consensus 102 ~~~~~~il~------------g-~~~-~~~---------------~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD------------G-FPR-TLG---------------QAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE------------S-CCC-SHH---------------HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE------------C-CCC-CHH---------------HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0 000 000 000000000100 000 00111233456
Q ss_pred CCHHHHHHHh-hhhhhhhhee----CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 337 ISGGQKRRVT-TGPALALFMD----EISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 337 LSGGqrkRvs-ia~a~vlllD----EptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
+|| |-|.. +.+|.+++|| |||+|||..+...+.+.++.+..
T Consensus 153 lSg--rv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 PSG--RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTT--EEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCC--CccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 888 22222 4677789999 99999999999999999987654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-11 Score=141.03 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=36.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+|+++ ..++|++++|+|||||||||||++|+|.+++. ..|.|...+.+
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~ 161 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDP 161 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESS
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCc
Confidence 44444 56899999999999999999999999998763 14666544433
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.5e-13 Score=142.27 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPE 984 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~ 984 (1436)
|++++|+||||||||||+++|++.. .|.+.++|...... ...|+++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 6899999999999999999999732 46788888543211 2346677765444456788887664432110
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCCcceecCCCCCCCHHH
Q 038815 985 VDSETRKMFIEEIMELVELNPLRQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 985 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~---~~~~~l--SgGqrkRl~ia~------~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
-+...+.+...+. ...+.+ |+|+++++.++. +++.+|+...+|+ |||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011111000 001234 888888888888 9999999999994 899988
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecC-CCHHHHHHhhhh
Q 038815 1054 AAIVMRTVKNTVETGRTVVCTIHQ-PSIDIFESFDEA 1089 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~g~tvi~t~Hq-ps~~if~~FD~~ 1089 (1436)
... ++.++.+.+.+.+||.++|+ ++ ++-+..|+.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i 167 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNL 167 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHH
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHH
Confidence 888 88888776567899999998 53 455556663
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-11 Score=139.30 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=84.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhh----h
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA----W 978 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a----~ 978 (1436)
+++.++||.|+||||||||.+.|++.... .| . . ++.+.+|+|++.+++. ++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46789999999999999999999986431 11 0 0 3445666999988864 8889987752 1
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCCc--c--cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCCcceecCCCCCC
Q 038815 979 LR---LPPEVDSETRKMFIEEIMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 979 lr---~~~~~~~~~~~~~v~~~l~~l~L~~--~--~~~~vg~~~~~~lSgGqrkRl~ia--~~L~~~p~il~lDEPTsgL 1049 (1436)
+. .|...+ .+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+||++||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 233455666664320 0 1111111 1247899999999997 555 89999999999999
Q ss_pred CHHH
Q 038815 1050 DARA 1053 (1436)
Q Consensus 1050 D~~~ 1053 (1436)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-10 Score=117.85 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=43.3
Q ss_pred HhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Q 038815 1033 LVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1033 L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1081 (1436)
.+.+|++|+||||++ ++|......+.+.+....+.|+++|+|+|.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999998877899999999988654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-10 Score=126.55 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=76.3
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC--CCC---CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++... ....+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------------~~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------------FRPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------------CCHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------------cCHHHHHH
Confidence 67899999999999999999999999983 211 11246677766421 01111000
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--hCCCcceecCCCCCCCH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk-Rl~ia~~L~--~~p~il~lDEPTsgLD~ 1051 (1436)
....+. ... +++++.+.+ ....+..+.. .+.-..+++ .+|+++++||||+.+|.
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000110 111 112221110 0124555433 233344444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCC
Q 038815 1052 R-------A-----AAIVMRTVKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1052 ~-------~-----~~~i~~~l~~~~~~-g~tvi~t~Hqps 1079 (1436)
. + ...+++.|++++++ |.|||+++|...
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 5 3 34566667776654 999999999653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-12 Score=148.76 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=103.1
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cccceEEEeccCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TFTRISGYCEQNDIHS 964 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~d~~~ 964 (1436)
..+|+++|+.+++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|+...+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 358999999999999999999999999999999998543 2247788887654321 2345689999987766
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCCHHH-HHHHHHHHHHHcC
Q 038815 965 PLV------------TVYESLLYS-----------------------------AWLRLPPEVDSET-RKMFIEEIMELVE 1002 (1436)
Q Consensus 965 ~~l------------Tv~E~l~f~-----------------------------a~lr~~~~~~~~~-~~~~v~~~l~~l~ 1002 (1436)
+.. +++|.+... ..+..+...+..+ .++.+.++...+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 233333110 0000000000000 0000111111111
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1003 L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.++.+
T Consensus 200 l-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 V-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp E-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred E-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1 111110 113579999999999999887 688876 999999999999999988653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.7e-10 Score=122.65 Aligned_cols=59 Identities=12% Similarity=-0.013 Sum_probs=43.7
Q ss_pred hhhhheeCCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEEecChh-------------hHHhhcCeEEEecC
Q 038815 350 ALALFMDEISNGLDSS--------TTFQIVNSIRQNIHILNGTAVISLLQPAP-------------ETYDLFDDIILLSD 408 (1436)
Q Consensus 350 a~vlllDEptsgLDs~--------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~-------------~~~~lfD~vilL~~ 408 (1436)
+.++++||||+++|.. ...++++.|+++++..+.++++ ++|... .+...+|.|++|+.
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 5679999999999973 2355677788887766666665 555543 56789999999975
Q ss_pred C
Q 038815 409 G 409 (1436)
Q Consensus 409 G 409 (1436)
.
T Consensus 185 ~ 185 (220)
T 2cvh_A 185 L 185 (220)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-11 Score=141.01 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=90.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc-------cccce--EEEeccCCCCCCCCCHHHH
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE-------TFTRI--SGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~d~~~~~lTv~E~ 972 (1436)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+.+. +.|++|.....|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999643 2357899988764211 12233 4599999988899999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHH
Q 038815 973 LLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1052 (1436)
Q Consensus 973 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~ 1052 (1436)
+.++..... +. .+++..|+.+..+.+ .++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 001112222111111 112223778887666666777444 3
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEecC
Q 038815 1053 AAAIVMRTVKNTVE-TGRTVVCTIHQ 1077 (1436)
Q Consensus 1053 ~~~~i~~~l~~~~~-~g~tvi~t~Hq 1077 (1436)
..+++.++.+.+ .+.|+|+++|-
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455666666654 48999999994
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-11 Score=133.24 Aligned_cols=62 Identities=5% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHH-Hhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 314 YYLKVLGLDICADTLVGDEMIRGISGGQKRR-VTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 314 ~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkR-vsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
.+++..+++.. .++++ ...+|+||||| +..+++. .+++|||||++|.....++.+.|.+...
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34556666532 23332 34699999999 6665544 3689999999999999999999988654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-10 Score=136.07 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=62.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHH
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---------QRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.+++|+....|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999886 8999999988754321 1135699999999999999999
Q ss_pred HHhhh
Q 038815 260 LAFSA 264 (1436)
Q Consensus 260 l~f~~ 264 (1436)
+.++.
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=115.79 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=58.4
Q ss_pred ccCCCCHHHHHHHhhhhhh---------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 333 MIRGISGGQKRRVTTGPAL---------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~---------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.+..||||||||++||+++ +++|||||+|||+.+...+.+.|+++.. ++++|+ ++|+ ..+.+.+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~-~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLR-DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSC-HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEec-HHHHHhCCEE
Confidence 3567999999999997654 6899999999999999999999998643 344444 5555 4567899999
Q ss_pred EEec--CCe
Q 038815 404 ILLS--DGL 410 (1436)
Q Consensus 404 ilL~--~G~ 410 (1436)
+.+. +|.
T Consensus 137 ~~v~~~~g~ 145 (173)
T 3kta_B 137 IGVSMRDGV 145 (173)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCE
Confidence 8664 563
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-10 Score=137.06 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=92.0
Q ss_pred ccccceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 174 RKKHLTILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 174 ~~~~~~iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
.++..+ |++||+.+++|++ ++|+|||||||||||++|+|..- .|.-.-. ......++.++|++|++.++
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CE
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCccc
Confidence 334455 9999999999999 99999999999999999999841 2321110 00111235689999999888
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc-CCcc----ccc
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL-GLDI----CAD 326 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~~ 326 (1436)
+.+||.||+.|+.... .+.+.+ ... .......+.++... ++.. ..|
T Consensus 95 ~~ltv~D~~~~g~~~~---------~~~~~~-------------~i~-------~~i~~q~~~~L~e~~~i~r~l~~~~d 145 (427)
T 2qag_B 95 LKLTIVSTVGFGDQIN---------KEDSYK-------------PIV-------EFIDAQFEAYLQEELKIRRVLHTYHD 145 (427)
T ss_dssp EEEEEEEEECCCC-CC---------HHHHSH-------------HHH-------HHHHHHHHHHHHHC--CCCCCCCSCC
T ss_pred cccchhhhhhhhhccc---------cchhhh-------------HHH-------HHHHHHHHHHHHHHHhhhhhhccccc
Confidence 8999999998753211 000000 000 00111223344443 4432 122
Q ss_pred cc----cc--CcccCCCCHHHHHHHhh-----hhhhhhheeCCCCCCCHHHHHHHHHHHHH
Q 038815 327 TL----VG--DEMIRGISGGQKRRVTT-----GPALALFMDEISNGLDSSTTFQIVNSIRQ 376 (1436)
Q Consensus 327 t~----vg--~~~~rgLSGGqrkRvsi-----a~a~vlllDEptsgLDs~t~~~i~~~l~~ 376 (1436)
+. +. .+..++++-.+ +.| ..+.++++|||+..|.+.....+.+.+++
T Consensus 146 ~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 146 SRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp --CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred ccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 22 11 11124677666 333 34457999999999999988888888886
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-11 Score=128.34 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------cc-ceEE----EEcCCCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQ-RVAA----YISQHDNHI 251 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~ 251 (1436)
++++|+|+||||||||++.|+|.+++.....|.|.++|.++.+.. .+ +.++ +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 579999999999999999999998874333799999998854432 11 2345 777765443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-10 Score=125.97 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=54.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHhhh
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHDNHIGEMTVRETLAFSA 264 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 264 (1436)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.|++.+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHH
Confidence 678999999999999999999999998 33 799999998753221 1234567777543 4678999987754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=129.66 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl------~ia~~L~~~-p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++..+.+.|+++. .+.+||+|+|+|. +....|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999864 3569999999974 4455555
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=121.39 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCC--CCcccEEEEcCc
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSS--LKVSGRVTYNGH 230 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG--~~~~~--~~~~G~I~~~G~ 230 (1436)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 5689999999999999999999999999 44331 011566666654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-10 Score=138.56 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=69.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC------C---ccceEEEEcCCCCCC
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF------E---PQRVAAYISQHDNHI 251 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 251 (1436)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999988765331 0 134689999998888
Q ss_pred CCCCHHHHHHhhh
Q 038815 252 GEMTVRETLAFSA 264 (1436)
Q Consensus 252 ~~lTV~E~l~f~~ 264 (1436)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-11 Score=150.68 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=65.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRE 258 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 258 (1436)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......+.++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4688999999999999999999999999999999999887 8999999865212212345677777655334568888
Q ss_pred HHHhhhh
Q 038815 259 TLAFSAR 265 (1436)
Q Consensus 259 ~l~f~~~ 265 (1436)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-10 Score=134.00 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=80.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeecccc--ccc-ceEEEeccCCCCC-----CCCCH
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQE--TFT-RISGYCEQNDIHS-----PLVTV 969 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~d~~~-----~~lTv 969 (1436)
.+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|...... .++ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 654 35789998 78654321 122 2579999998553 67899
Q ss_pred HHHH--HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 038815 970 YESL--LYSA----WLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 1032 (1436)
Q Consensus 970 ~E~l--~f~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGqrkRl~ia~~ 1032 (1436)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 877 4431 0111111111122346889999999986 556553 4699999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-10 Score=129.42 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=78.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCcc---ceEEEEcCCCCCC-----CCCCHH
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEPQ---RVAAYISQHDNHI-----GEMTVR 257 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 257 (1436)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++... +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 999999 89876543221 2479999998543 78999
Q ss_pred HHH--Hhhh----hhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-ccccccc
Q 038815 258 ETL--AFSA----RCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADTLVG 330 (1436)
Q Consensus 258 E~l--~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg 330 (1436)
|++ .|+. .|+-. ++.+.. +....++.+++.+||++ .++.
T Consensus 238 e~l~~~f~~~~~~~c~~~-----------------~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~--- 283 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYP-----------------DCTHTN--------------EPGCAVKEAVKNGEISCERYKS--- 283 (302)
T ss_dssp GGGGGGCGGGHHHHHHST-----------------TCCSSS--------------CTTCHHHHHHHTTSSCHHHHHH---
T ss_pred HHHHHHHHHHHHccCCCC-----------------CCCCCC--------------CCCCHHHHHHHcCCCCHHHHHH---
Confidence 888 4531 01100 000000 01123567788899975 4443
Q ss_pred CcccCCCCHHHHHHHhhhhh
Q 038815 331 DEMIRGISGGQKRRVTTGPA 350 (1436)
Q Consensus 331 ~~~~rgLSGGqrkRvsia~a 350 (1436)
+++.|||.++|++.||+.
T Consensus 284 --~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 284 --YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp --HHHHTTCCCTTHHHHSSC
T ss_pred --HHHHHHHHHHHHHHHhcc
Confidence 445699988899998873
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-10 Score=130.66 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=80.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhhhhhcc
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFSARCQG 268 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 268 (1436)
+++.+++|.||+|||||||.+.|++.+.+ .| . .++.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 1 12345666999988864 88999887531000
Q ss_pred CCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccccccc-----CcccCCCCHHHHH
Q 038815 269 VGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVG-----DEMIRGISGGQKR 343 (1436)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-----~~~~rgLSGGqrk 343 (1436)
. +.. .+.....+.+. ....++.+.-. .+|..+ ..+...+||||+|
T Consensus 92 l---------~~~----~g~p~a~d~~~---------------l~~~l~~l~~g--~~t~~~~~v~~p~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 L---------LQG----RGLPGTHDMKL---------------LQEVLNTIFNN--NEHPDQDTVVLPKYDKSQFKGEGD 141 (290)
T ss_dssp G---------GSS----SCSTTSBCHHH---------------HHHHHHHHTC--------CCEEEECCEETTHHHHTCE
T ss_pred h---------hhh----ccCcchhHHHH---------------HHHHHHHhhcc--CccccCcceeeccCccccCCcccc
Confidence 0 000 00000111111 12234444322 111111 1234679999999
Q ss_pred HHhhh-----hhhhhheeCCCCCCCHHH
Q 038815 344 RVTTG-----PALALFMDEISNGLDSST 366 (1436)
Q Consensus 344 Rvsia-----~a~vlllDEptsgLDs~t 366 (1436)
|+.++ ++.|+|+||++++||+..
T Consensus 142 R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred ccccccceEcCCCEEEEeCccccCCccc
Confidence 98875 667899999999999853
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-11 Score=143.71 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCcccEEEEcCccCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL--------DSSLKVSGRVTYNGHNMDEF 235 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~--------~~~~~~~G~I~~~G~~~~~~ 235 (1436)
++++|+|+||||||||||.|+|.. .++ .|+|.++|.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~ 53 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDR 53 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCC
Confidence 689999999999999999999986 344 89999999887543
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-10 Score=136.09 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=49.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 247 (1436)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEee
Confidence 677776 7899999999999999999999999998752 1699988776653 3334556778774
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-11 Score=130.50 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=67.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
.++|++++|+||||||||||+++|+|.... |...|.|.++|.. +.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~-------------------~~~-~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH-------------------LDN-RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB-------------------CCH-HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc-------------------CCH-HHHHHhcccccCC
Confidence 478999999999999999999999996431 2223555555432 211 1111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCCcceecCCC
Q 038815 981 LPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1046 (1436)
Q Consensus 981 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia-~~L~~~p~il~lDEPT 1046 (1436)
.+...+.. ...+.+..+...+-.+..++..+ .++|+||+||+++| +.++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 11111111 12223333222111122222222 35799999999998 8899999999999985
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-09 Score=129.19 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+.|.++|+|+|++ .+.+..|+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~ 405 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDA 405 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCE
Confidence 469999999999999999 57999999999999999999999999999865578999999984 55666676
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-09 Score=126.50 Aligned_cols=136 Identities=15% Similarity=0.036 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-CCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR-KTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEV 985 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~-~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~ 985 (1436)
+.|.||||+|||||+++|++. .. ...|.+.++|.+... ....+.+++++|.+.+.-..+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence 899999999999999999993 32 235778888764321 112455788887654311100 0 0 000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 038815 986 DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065 (1436)
Q Consensus 986 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~ 1065 (1436)
... .+.+.++.+....-.+... .+|| +..+|+++++|||++ ||..+...+.++|.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333332111111110 3565 788999999999999 99999999999998753
Q ss_pred HcCCEEEEEecCCCH
Q 038815 1066 ETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1066 ~~g~tvi~t~Hqps~ 1080 (1436)
.+.++|+++|+|..
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 36899999999863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-11 Score=147.95 Aligned_cols=133 Identities=13% Similarity=-0.010 Sum_probs=88.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-------ccccceEEEec------
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-------ETFTRISGYCE------ 958 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 958 (1436)
..+|+++ + .++|++++|+|||||||||||++|+|.... .+|+|.+.|.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4478888 4 489999999999999999999999996542 25788887765421 11233445544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 959 ---QNDIH--SPL----VTVYESLLYSAWLRL----PPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 959 ---Q~d~~--~~~----lTv~E~l~f~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
|++.. .+. .|+.+++.++..-.. ....+. .+.++ .+..+++.+.. . ...|||||+|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i~-rL~~lgl~~~~--~-----~~~LSgg~~Q 300 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAVT-RLRDMGIEPFL--I-----SSSLLGVLAQ 300 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHHH-HHHHHTCCHHH--H-----HHHEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHHH-HHHHcCCcHHH--H-----HHHHHHHHHH
Confidence 77544 233 588998877532110 001111 11223 46677887653 2 2479999999
Q ss_pred HHHHHHHHhhCCCcce
Q 038815 1026 RLTIAVELVANPSIIF 1041 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~ 1041 (1436)
| ||++|+.+|++..
T Consensus 301 R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPY 314 (418)
T ss_dssp E--EEEEECTTTCEEE
T ss_pred H--hhhhhcCCCCccC
Confidence 9 9999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.76 E-value=7.5e-12 Score=154.66 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=102.6
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..+++++++.+++|+.++|+|||||||||||++|+|...+ ..|.|.++|.+.-...-...++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3478999999999999999999999999999999997653 36889998854211111234556665544222345555
Q ss_pred HHHHhhhhcCCC------CCCHHHHHH------------------HHHHHHHHcCCCc--ccccccCC-C----CCCCCC
Q 038815 972 SLLYSAWLRLPP------EVDSETRKM------------------FIEEIMELVELNP--LRQSLVGL-P----GVSGLS 1020 (1436)
Q Consensus 972 ~l~f~a~lr~~~------~~~~~~~~~------------------~v~~~l~~l~L~~--~~~~~vg~-~----~~~~lS 1020 (1436)
.+.-+ +|+.+ ++...+-.. .++++++.+...+ ....++.. . ....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 54322 22211 111111111 1223333333311 11111100 0 013579
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC--TIHQP 1078 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--t~Hqp 1078 (1436)
+|||||++++. + | |+|||+.+...+++.|.++.+.|+|+++ ++|+.
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l 450 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL 450 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH
Confidence 99999987752 1 7 9999998877777777776666889875 78863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-10 Score=140.03 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=63.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-------cceEEE--
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-------QRVAAY-- 243 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~y-- 243 (1436)
..+....+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.+++
T Consensus 151 ~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f 225 (418)
T 1p9r_A 151 MTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTF 225 (418)
T ss_dssp CCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCH
T ss_pred CCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCH
Confidence 334445688888 4 4899999999999999999999999999876 8999999987642111 122334
Q ss_pred -------EcCCCCC--CCC----CCHHHHHHhhh
Q 038815 244 -------ISQHDNH--IGE----MTVRETLAFSA 264 (1436)
Q Consensus 244 -------v~Q~d~~--~~~----lTV~E~l~f~~ 264 (1436)
+.|++.. +++ .|+.+++.++.
T Consensus 226 ~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 226 ARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 3377654 354 58888887653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-09 Score=127.24 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=77.7
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHH--HCCCC---CCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~L--ag~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
.+-+++|++++|+||||||||||++.| .+..+ ++.-.+.+++++.... .. +.+
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---------------------~~-~rl 229 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---------------------RP-VRL 229 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CH-HHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---------------------CH-HHH
Confidence 368999999999999999999999955 45432 1122356677664210 00 111
Q ss_pred H-HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCCcceecCCCCCC
Q 038815 974 L-YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGL 1049 (1436)
Q Consensus 974 ~-f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSg-GqrkRl~ia~~L~--~~p~il~lDEPTsgL 1049 (1436)
. ...++. ... +++++.+- +. +..+. .+++.+..+.+++ .+|+++++||||+.+
T Consensus 230 ~~~a~~~g----l~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 230 VSIAQRFG----LDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred HHHHHHcC----CCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence 0 011111 011 11222111 11 11222 2344444444443 369999999999999
Q ss_pred CHHHH------------HHHHHHHHHHHHc-CCEEEEEecC
Q 038815 1050 DARAA------------AIVMRTVKNTVET-GRTVVCTIHQ 1077 (1436)
Q Consensus 1050 D~~~~------------~~i~~~l~~~~~~-g~tvi~t~Hq 1077 (1436)
|.... ..+++.|++++++ |.|||+|+|.
T Consensus 287 ~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 287 RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp C------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred chhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 96533 6788889988865 9999999997
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-11 Score=143.59 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=111.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------CCCCCCcccEEEEcCccCCC----CCccceE---EEEcCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGK------------LDSSLKVSGRVTYNGHNMDE----FEPQRVA---AYISQH 247 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 247 (1436)
.+++|..++|+|+||||||||+++|+|. .+| .+|.|.++|..++. ..+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 233 38999999854311 1223333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 248 DNHIGEMTVRETL--AFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 248 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
+-+.+.++..|.| .|-..++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777777766655 332222211 0011111111
Q ss_pred cccccCcccCCCCHHHHHHHhhhhh--hhhheeCCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecChhhHHhhcCe
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPA--LALFMDEISNGLDSSTTFQIVNSIRQN-IHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a--~vlllDEptsgLDs~t~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
++..+..+||+. .| .++++|||+.++|.......++.++.. .. .+.| ++ .|...++.++||+
T Consensus 127 ----~d~~i~~v~~~~-------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~~l~~~ 191 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV-------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQAIIEK 191 (392)
T ss_dssp ----CTTCSSCCSSSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHHHHHHH
T ss_pred ----ccceeeeecccc-------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHHHHHHH
Confidence 122233356543 45 689999999999999999988888875 32 3333 33 7788899999999
Q ss_pred EE-EecCC-eEEEecChH
Q 038815 403 II-LLSDG-LIVYLGPRE 418 (1436)
Q Consensus 403 vi-lL~~G-~iv~~G~~~ 418 (1436)
+. +|.+| ++++.|+.+
T Consensus 192 i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 192 VYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHTTCSCGGGSCCC
T ss_pred HHHHhccCCceeecCCCC
Confidence 99 99999 888777543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-10 Score=137.04 Aligned_cols=157 Identities=21% Similarity=0.207 Sum_probs=97.6
Q ss_pred ccceeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEEcCccCCCC---CccceEEEE
Q 038815 176 KHLTILKDVSGIIRPG-------SMTLLLGPPSSGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEF---EPQRVAAYI 244 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~G-------e~~~llGp~GSGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv 244 (1436)
+...++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456888999999877 8999999999999999999999873221 1367666666554221 123568999
Q ss_pred cCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccc
Q 038815 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDIC 324 (1436)
Q Consensus 245 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 324 (1436)
.|.+.+.+ ++.|+|.......+. +.. .... .....++..+..++|..
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~~------------------------~~~~~i~~~l~~~~li~- 155 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQI----DIM--IGKG------------------------PSAKSIRIDIQPFTLVG- 155 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-
T ss_pred cchhhcCH--HHHHHHHHHHHhccc----cee--eccC------------------------cccccccccCCCeEEEE-
Confidence 99876654 788888543321110 000 0000 00011222334445533
Q ss_pred ccccccCcccCCCCHHHHHHHhhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 038815 325 ADTLVGDEMIRGISGGQKRRVTTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHIL 381 (1436)
Q Consensus 325 ~~t~vg~~~~rgLSGGqrkRvsia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~ 381 (1436)
+++.. ..||+|+|+|+.++ .+||+.+..++.+.|++.++..
T Consensus 156 at~~~-----~~Ls~~l~sR~~l~-----------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 156 ATTRS-----GLLSSPLRSRFGII-----------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp EESCG-----GGSCHHHHTTCSEE-----------EECCCCCHHHHHHHHHHHHHHT
T ss_pred ecCCc-----ccCCHHHHHhcCce-----------eeCCCCCHHHHHHHHHHHHHHc
Confidence 44443 36999999998665 6788888888999988876543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-09 Score=116.07 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=35.8
Q ss_pred hhhhhhheeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 348 GPALALFMDEISN-GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 348 a~a~vlllDEpts-gLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
..+.+|++|||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 3567999999985 9999999888888877543 466777766666544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-08 Score=118.76 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCc---cceEEEEcCCCC------------
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEP---QRVAAYISQHDN------------ 249 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~------------ 249 (1436)
+.+|++++|+||||||||||||+|+|...|. +|+|.+ +|++++.... .+.++|+.|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4479999999999999999999999999987 999999 8987754322 134789999874
Q ss_pred ----CCCCCCHHHHHHhh
Q 038815 250 ----HIGEMTVRETLAFS 263 (1436)
Q Consensus 250 ----~~~~lTV~E~l~f~ 263 (1436)
++|++|| ||+.|+
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 5888888 888875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=120.97 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=41.2
Q ss_pred hhhhheeCCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hhHHh
Q 038815 350 ALALFMDEISNGLDSSTT------------FQIVNSIRQNIHILNGTAVISLLQPA-------------------PETYD 398 (1436)
Q Consensus 350 a~vlllDEptsgLDs~t~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~~~ 398 (1436)
+.++++|||++.+|+... .++++.|+++++..+.|+|++ +|.. ..+..
T Consensus 274 ~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l~~ 352 (400)
T 3lda_A 274 FSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIMAY 352 (400)
T ss_dssp EEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHHHH
T ss_pred CceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHHHH
Confidence 557899999999996543 678888888887766666665 4441 22456
Q ss_pred hcCeEEEecCCe
Q 038815 399 LFDDIILLSDGL 410 (1436)
Q Consensus 399 lfD~vilL~~G~ 410 (1436)
.+|.++.|.+|+
T Consensus 353 ~ad~vl~L~~~~ 364 (400)
T 3lda_A 353 SSTTRLGFKKGK 364 (400)
T ss_dssp HCSEEEEEEECS
T ss_pred hcceEEEEEecC
Confidence 789999998763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-11 Score=130.46 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=38.4
Q ss_pred hhhhhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 346 TTGPALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 346 sia~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
-+.+|.+++|||+|+++|..+...|.+.|....+.. ...| . . ..||.|+++++
T Consensus 121 ~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 121 FVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp EEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred EEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 335667899999999999999999999888765431 1122 1 1 57899988764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-09 Score=121.13 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeeccc-ccccce-EEEeccCCCCCC----CCCHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQ-ETFTRI-SGYCEQNDIHSP----LVTVY 970 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~-~~~~~~-~gyv~Q~d~~~~----~lTv~ 970 (1436)
+.+.+|++++|+||||||||||+|+|+|... ..+|+|.+ +|..... ....+. .||+.|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999754 35788988 6754322 112222 799999987655 6789
Q ss_pred HHHH--Hhh------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 971 ESLL--YSA------WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 971 E~l~--f~a------~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|+++
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1121111111122345889999999986433221 246667666
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-09 Score=126.31 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=92.6
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETL 260 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 260 (1436)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..... ..++++.+++ ...+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~--~~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSE--EERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSS--SCEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecC--cceEEEEecc
Confidence 389999999999999999999999999999999742 22333333222 2356666543 1111222211
Q ss_pred Hh---hhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCC
Q 038815 261 AF---SARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGI 337 (1436)
Q Consensus 261 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgL 337 (1436)
-+ +....+.+. .+.+. ...++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011222233332 2345579
Q ss_pred CHHHHHHHhhhhh-----hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 338 SGGQKRRVTTGPA-----LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 338 SGGqrkRvsia~a-----~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
|+||+||+.++++ .++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 9999999998654 35677 99998776 55555555544345566665555555666666554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-08 Score=116.93 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=43.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE---cCccCCCCCc-cce-EEEEcCCCCCCC----CCCHHH
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEFEP-QRV-AAYISQHDNHIG----EMTVRE 258 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~E 258 (1436)
+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|+.|++...+ .+|+ |
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4579999999999999999999999998876 999998 8876543221 122 689999986655 6899 9
Q ss_pred HHH
Q 038815 259 TLA 261 (1436)
Q Consensus 259 ~l~ 261 (1436)
+|.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 884
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-10 Score=132.59 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=85.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCC-CCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQND-IHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d-~~~~~l 967 (1436)
..+++++++.+++| ++|.||||+|||||+++|+|.... |.|.++|...... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45789999999999 999999999999999999996542 6788988654221 1234466777763 445566
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 968 TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
++.|++...+..|. .. . .+ .+....+.+ ...|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~-~---~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR-E---TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC-c---ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 0 00 112222333 2469999999999999999999985 88864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-09 Score=118.00 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=27.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999875
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-10 Score=129.26 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=57.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCC-CCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHD-NHIGE 253 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 253 (1436)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998753 789999987643321 23455666653 34455
Q ss_pred CCHHHHHHh
Q 038815 254 MTVRETLAF 262 (1436)
Q Consensus 254 lTV~E~l~f 262 (1436)
+++.|++..
T Consensus 106 i~~~Deid~ 114 (274)
T 2x8a_A 106 VIFFDEVDA 114 (274)
T ss_dssp EEEEETCTT
T ss_pred eEeeehhhh
Confidence 555555543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=113.80 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=67.2
Q ss_pred HHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHHhh------h-----h-hhhhheeCCCCCCCHHHHH
Q 038815 312 TDYYLKVLGLDIC-------ADTLVGD----EMIRGISGGQKRRVTT------G-----P-ALALFMDEISNGLDSSTTF 368 (1436)
Q Consensus 312 ~~~~l~~lgL~~~-------~~t~vg~----~~~rgLSGGqrkRvsi------a-----~-a~vlllDEptsgLDs~t~~ 368 (1436)
++..++.+++.+. .+..+.+ ..+..+||||||||++ + . |.+++|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 4456777777651 1222222 4456899999999854 2 3 6789999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 369 QIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 369 ~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
.+.+.|+++. .++++++ ++|.. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 9999998752 2345554 55654 4788999999997
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-10 Score=131.64 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=93.1
Q ss_pred eEEeeceEeeEeCC-------cEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEEcCeeccc---ccccceEEEecc
Q 038815 892 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGSITISGYLKKQ---ETFTRISGYCEQ 959 (1436)
Q Consensus 892 ~~iL~~vs~~i~~G-------e~~al~G~sGaGKTTLl~~Lag~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 959 (1436)
..++++++..+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34778888888876 88999999999999999999985421 1345555544432211 112456899999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 038815 960 NDIHSPLVTVYESLLYSAWLRLPPEV--DSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1037 (1436)
Q Consensus 960 ~d~~~~~lTv~E~l~f~a~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p 1037 (1436)
.+.+.+ ++.|+|........ ... ......+.+++.++.++|.. +++. ...||+|+|+|+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 877765 78888853322111 000 01111223444444455543 3333 246999999998655
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHHc
Q 038815 1038 SIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067 (1436)
Q Consensus 1038 ~il~lDEPTsgLD~~~~~~i~~~l~~~~~~ 1067 (1436)
.+||+.+...+.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999987653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-09 Score=122.70 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=60.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEE---cCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHhh
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD--SSLKVSGRVTY---NGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAFS 263 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 263 (1436)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999887 66 899999 8876432 123446788 877788899999999987
Q ss_pred hhhc
Q 038815 264 ARCQ 267 (1436)
Q Consensus 264 ~~~~ 267 (1436)
.++.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-08 Score=122.35 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=49.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 234 (1436)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999987 9999999988754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-09 Score=126.51 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred EeeceEeeE-------------------eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeeccccccc
Q 038815 894 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQETFT 951 (1436)
Q Consensus 894 iL~~vs~~i-------------------~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~~~~ 951 (1436)
+++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ +|..... ..+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HHH
Confidence 677777777 89999999999999999999999995321023588888 8875432 223
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHhhhhc
Q 038815 952 RISGYCEQNDIHSPLVTVYESLLYSAWLR 980 (1436)
Q Consensus 952 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 980 (1436)
+.+|++ |...+.+.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 457888 7777778889999998766554
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-09 Score=128.01 Aligned_cols=156 Identities=9% Similarity=0.033 Sum_probs=102.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC----------CCCeeEEEEEEcCeeccc----ccccce---EEEeccCCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGSITISGYLKKQ----ETFTRI---SGYCEQNDIH 963 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~Q~d~~ 963 (1436)
.+++|..++|+|+||||||||+|+|+|.. +..+..|.+.++|..... ..-++. ..++.+..-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 66889999999999999999999999932 123467999998842210 011122 2466777767
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--Cc
Q 038815 964 SPLVTVYESL--LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1039 (1436)
Q Consensus 964 ~~~lTv~E~l--~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p--~i 1039 (1436)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 6767766655 444443321 11111122211 1 1122355542 89 99
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHHhhhhc
Q 038815 1040 IFMDEPTSGLDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFESFDEAI 1090 (1436)
Q Consensus 1040 l~lDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~t~Hqps~~if~~FD~~~ 1090 (1436)
+++|||+.++|.......++.+++. .+.|.||+ +|.. .++.+.+|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~ 193 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHH
Confidence 9999999999999999999999988 66677864 8874 46777888743
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=98.40 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666 8999999999999999999999998764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.9e-11 Score=128.55 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHH-HHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1029 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1029 ia~-~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+++ +++.+|++++|||+|+++|..+...|.+.|++..+
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455 67889999999999999999999999999887654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-08 Score=117.22 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=64.4
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE---cCeecccc-c-c-cceEEEeccCCC------------
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI---SGYLKKQE-T-F-TRISGYCEQNDI------------ 962 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i---~g~~~~~~-~-~-~~~~gyv~Q~d~------------ 962 (1436)
.+.+|++++|+||||||||||||+|+|... +.+|+|.+ +|...... . + .+.+||+.|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999765 35799998 78654321 1 1 135799999874
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 038815 963 ----HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-PLRQSL 1010 (1436)
Q Consensus 963 ----~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 1010 (1436)
++|.+|+ ||+.|.. .+ . ..+....++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 8887752 11 1 112234688999999995 555544
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-09 Score=124.29 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCC-------CccceEEEEcCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------EPQRVAAYISQHD 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d 248 (1436)
....+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++
T Consensus 40 ~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 40 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 116 (337)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence 3456899999999999999999999999999999999998876 89999999876432 1245689999988
Q ss_pred CCCCC
Q 038815 249 NHIGE 253 (1436)
Q Consensus 249 ~~~~~ 253 (1436)
..++.
T Consensus 117 ~~~~~ 121 (337)
T 2qm8_A 117 NAFIR 121 (337)
T ss_dssp TEEEE
T ss_pred ccccc
Confidence 77654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-07 Score=112.45 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCcccEEEEcCccCCCCC-ccceEEEEcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAG-KLDSSLKVSGRVTYNGHNMDEFE-PQRVAAYISQHD 248 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d 248 (1436)
++|.||||+|||||+++|+| ...++ .|+|.++|.+..... .+..++|++|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccc
Confidence 89999999999999999999 56665 899999987654221 134567777765
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.7e-07 Score=102.14 Aligned_cols=128 Identities=19% Similarity=0.099 Sum_probs=84.2
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
+++++. +|++++|+|+||+||||++..|++.... ..|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~------------------~~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP------------------AAR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH------------------HHH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH------------------hHH-HHH--
Confidence 677887 9999999999999999999999985431 135666655432100 000 001
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC-CCCCCHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1054 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP-TsgLD~~~~ 1054 (1436)
..+.+..++..+... .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 112233455432110 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHHcCCEEEEEe
Q 038815 1055 AIVMRTVKNTVETGRTVVCTI 1075 (1436)
Q Consensus 1055 ~~i~~~l~~~~~~g~tvi~t~ 1075 (1436)
..+.+..+.+. ...+++++-
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888777653 344554443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-07 Score=110.16 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=73.4
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhh
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA 977 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a 977 (1436)
+++..++|++++|+|+|||||||++..|++.... ..|+|.+.+.+.. + + ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~----r-------------~--~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTF----R-------------A--AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTT----C-------------H--HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccc----c-------------H--HHHHH-----
Confidence 4555689999999999999999999999985421 1245555443210 0 0 00111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 978 WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 978 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl---~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
++...+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 223344455532 124688999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 038815 1055 AIVMRTVKNT 1064 (1436)
Q Consensus 1055 ~~i~~~l~~~ 1064 (1436)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-08 Score=108.52 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCCCCCHHHHHH
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIGEMTVRETLA 261 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 261 (1436)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .+..++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 46678999999999999999999999999863 3555554433221 1345789999887777777766654
Q ss_pred h
Q 038815 262 F 262 (1436)
Q Consensus 262 f 262 (1436)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.6e-08 Score=110.14 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.0
Q ss_pred hCCCcceecCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCC
Q 038815 1035 ANPSIIFMDEPTSGL--DARAAAIVMRTVKNTV-ETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps 1079 (1436)
.+|+++++|+||+.+ |......++..+.+++ +.|.|||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 479999999999988 5544555556666655 46899999999765
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-07 Score=96.56 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCC-------C--eeEEEEEEcCeecccc-----cccceEEEeccCCCC-CCCCCHHH
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTG-------G--YITGSITISGYLKKQE-----TFTRISGYCEQNDIH-SPLVTVYE 971 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~-------~--~~~G~i~i~g~~~~~~-----~~~~~~gyv~Q~d~~-~~~lTv~E 971 (1436)
.++|+|+||||||||++.|+|.... + ...|.|.++|...... ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999985431 1 2478999998643210 011111222221000 00111111
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCH
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~ 1051 (1436)
..... +.+......+++.+... ....=..+++. .+|.....+.+.+|++++.+|+++++| ||++|.
T Consensus 111 ~~~~~---------s~~~~~~~~~~~~~~~~-~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKELRDHAD-SNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---------HHHTHHHHHHHHHHHSC-TTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---------HHHHHHHHHHHHHHhcC-CCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 10000 00000011112211111 11111112221 123333345678999999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 038815 1052 RAAAIVMRTVKNT 1064 (1436)
Q Consensus 1052 ~~~~~i~~~l~~~ 1064 (1436)
.....+++.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988753
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-10 Score=126.41 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCC-CCCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQND-IHSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d-~~~~~l 967 (1436)
..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|...... ...+.+++++|.. ...+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999 99999999999999999998653 46778887543211 1123345666653 345667
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCC
Q 038815 968 TVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1046 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPT 1046 (1436)
++.|++...+..+... ....++..+.+++++. .+||||+||+.|++++..+|++ +|++.
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 7777774322221110 0111222333444332 4789999999999999999987 56543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-07 Score=110.23 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=94.6
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+.. ++..+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E----------------------~s~~~ 246 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLE----------------------MSAQQ 246 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESS----------------------SCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECC----------------------CCHHH
Confidence 368888888999999999999999999999998874210 011 22221111 11111
Q ss_pred HHHH--hh-------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCcc
Q 038815 972 SLLY--SA-------WLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSII 1040 (1436)
Q Consensus 972 ~l~f--~a-------~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~--~~p~il 1040 (1436)
...- +. .++. ...+.++ ...+.+.++.++..++.-. . ..++|.+|.+ +.++.++ .+|+++
T Consensus 247 l~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~li 317 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMI 317 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEE
Confidence 1100 00 1111 1223322 2345556666654443211 1 2368999987 5677776 579999
Q ss_pred eecCCCCCCC--------HHHHHHHHHHHHHHHHc-CCEEEEEec
Q 038815 1041 FMDEPTSGLD--------ARAAAIVMRTVKNTVET-GRTVVCTIH 1076 (1436)
Q Consensus 1041 ~lDEPTsgLD--------~~~~~~i~~~l~~~~~~-g~tvi~t~H 1076 (1436)
++|+++...+ ......+.+.|+++++. |.+||+++|
T Consensus 318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 9999998774 23446788889998865 999999999
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-09 Score=123.50 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=80.4
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCC-CCCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDI-HSPLV 967 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~-~~~~l 967 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 34789999999999 99999999999999999998654 46788887543211 11233556666542 45667
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 968 TVYESLLYSAWLRLPP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 968 Tv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
++.|++...+..+... ....++..+.+.+++ ..+||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 7777774322211110 001122223333333 24789999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-08 Score=126.94 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=98.1
Q ss_pred ceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCC--------
Q 038815 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDI-------- 962 (1436)
Q Consensus 891 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~-------- 962 (1436)
...++++++..+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+.. .....++||++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHHH
Confidence 345789999999999999999999999999999999976432 2478888876543 23456788876431
Q ss_pred --------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038815 963 --------------HSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1028 (1436)
Q Consensus 963 --------------~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ 1028 (1436)
.+..+++.+|+.....-..+...-.+ . ....-+++|........ ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222222110000000000000 0 00011122221111111 1469999999999
Q ss_pred HHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHH
Q 038815 1029 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1063 (1436)
Q Consensus 1029 ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~ 1063 (1436)
.+....+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888888874
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=8.2e-07 Score=104.72 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.5
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|-+++|+++.|.||+|+|||||+..++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999999888775
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-08 Score=124.40 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=93.3
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC----CCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCC-----
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLV----- 967 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l----- 967 (1436)
.+++.+..|..++|.|++||||||+|+.|.. +.++ |++.+.+.+.+...+.. | ...|++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~---~-----~~lPhl~~~Vv 226 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV---Y-----EGIPHLLTEVV 226 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG---G-----TTCTTBSSSCB
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh---h-----ccCCcccceee
Confidence 3667778899999999999999999999864 2222 33433333322111111 0 011111
Q ss_pred -CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCCCCHHHHHHH----------HHHHHHh
Q 038815 968 -TVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS--LVGLPGVSGLSTEQRKRL----------TIAVELV 1034 (1436)
Q Consensus 968 -Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~--~vg~~~~~~lSgGqrkRl----------~ia~~L~ 1034 (1436)
.+.+....-.++ .++.+++ .+.++..|+.++.+. .+ ...+|+||+||. .+++++.
T Consensus 227 td~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~ 294 (512)
T 2ius_A 227 TDMKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLK 294 (512)
T ss_dssp CSHHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCC
T ss_pred cCHHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccc
Confidence 122222111111 1222222 367888888776432 11 124678887753 3455666
Q ss_pred hCCC-cceecCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCCHH
Q 038815 1035 ANPS-IIFMDEPTSGLDARAAAIVMRTVKNTVET----GRTVVCTIHQPSID 1081 (1436)
Q Consensus 1035 ~~p~-il~lDEPTsgLD~~~~~~i~~~l~~~~~~----g~tvi~t~Hqps~~ 1081 (1436)
..|. ++++||++.-+|.. ...+.+.|.++++. |.++|+++|+|+.+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred cCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 7888 68999999998843 34566666666543 66999999999854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-08 Score=104.23 Aligned_cols=68 Identities=22% Similarity=0.145 Sum_probs=43.5
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc---ccccceEEEeccCCCCCCCCCHHHH
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFTRISGYCEQNDIHSPLVTVYES 972 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~ 972 (1436)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|+...++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678999999999999999999999999742 24455533221 1124457888887655444444433
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-07 Score=120.06 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=55.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQH 247 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 247 (1436)
...++++++..+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+... ..++|++|.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g 112 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPAC 112 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETT
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecc
Confidence 345889999999999999999999999999999999999774 2488999888765543 357888764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.5e-07 Score=99.94 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=23.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA-GKLDS 217 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~La-G~~~~ 217 (1436)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98743
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=95.16 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=40.2
Q ss_pred hhhhheeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh--------HHhhcCeEEEecC
Q 038815 350 ALALFMDEISNGL--DSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE--------TYDLFDDIILLSD 408 (1436)
Q Consensus 350 a~vlllDEptsgL--Ds~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~lfD~vilL~~ 408 (1436)
+.++++|++++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 129 ~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 4578999999988 6555566777777777665555555 5555444 5678899999974
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-07 Score=111.69 Aligned_cols=50 Identities=20% Similarity=0.119 Sum_probs=43.9
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.+|+|+|+.+++ +++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 368999999999 9999999999999999999999654 2468899999754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-06 Score=91.93 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1065 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~ 1065 (1436)
....|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999 99999999999998887654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-07 Score=104.02 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC-----------ccceEEEEcCC
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE-----------PQRVAAYISQH 247 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 247 (1436)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999987 899999998763211 12457788773
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-06 Score=96.82 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=39.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHh
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVRETLAF 262 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 262 (1436)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.++.. ..++.|.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~ 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKT 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHH
Confidence 479999999999999999999999998653 45 13556666542 3456666654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.1e-06 Score=100.37 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=88.0
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHCCCCC---------CeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHH---
Q 038815 904 PGVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVY--- 970 (1436)
Q Consensus 904 ~Ge~-~al~G~sGaGKTTLl~~Lag~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~--- 970 (1436)
.|-. ++|+|++|||||||+|.|+|.... +...|.+.++|.+.. +....|++.+.+. ..|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999996421 145789999885431 2233455544221 1121
Q ss_pred HHHHHhh--h--hc-CC-CCCC--HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCC
Q 038815 971 ESLLYSA--W--LR-LP-PEVD--SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANP 1037 (1436)
Q Consensus 971 E~l~f~a--~--lr-~~-~~~~--~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia----~~L-~~~p 1037 (1436)
..+.... . +. .. .+.. ..+..+.+.++++.+++.+..--+|++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 1111100 0 00 00 1111 1233344677888888765442223322 234688888888887 444 3333
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 1038 SIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 1038 ~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
++ +|||++|......+.+.|.+...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 43 89999999999999999988654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-06 Score=100.39 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=31.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVT 226 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~ 226 (1436)
=+++|+++.|.||||||||||+..+++...+. .|.|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~Vl 93 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAA 93 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 58899999999999999999999999886543 45553
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-06 Score=101.91 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCC
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVKNTV----ETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~t~Hqps 1079 (1436)
++++.|-.++.+....|.|||+||+ ++|.|......+.+++..+- +.+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24678999999984
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=97.99 E-value=9.9e-07 Score=108.12 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=102.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345789999889999999999999999999999999875431 23 113444422 333
Q ss_pred HHHHHhh-hhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 257 RETLAFS-ARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 257 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
.+...-. +...++.. ..+ ..+. ...+.+ . .....++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l-----~~g~---l~~~~~-----------~-~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL-----RTGK---LTPEDW-----------G-KLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH-----HTSC---CCHHHH-----------H-HHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH-----hcCC---CCHHHH-----------H-HHHHHHHHHhcCCE---EEEC--CC
Confidence 3322110 00001100 000 0000 000000 0 11222333332221 1111 23
Q ss_pred CCCHHHHHHHhh-----hhhhhhheeCCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec-----------
Q 038815 336 GISGGQKRRVTT-----GPALALFMDEISNGLDS--------STTFQIVNSIRQNIHILNGTAVISLLQ----------- 391 (1436)
Q Consensus 336 gLSGGqrkRvsi-----a~a~vlllDEptsgLDs--------~t~~~i~~~l~~~~~~~~~t~ii~~~q----------- 391 (1436)
++|++|.+...- ..+.++++|+++...++ ....++.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~~~ 373 (454)
T 2r6a_A 295 SIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQDK 373 (454)
T ss_dssp TCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC---
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCCCC
Confidence 689999875433 23557999999997742 33467888899988876655555 566
Q ss_pred -Ch-------hhHHhhcCeEEEecCCeE
Q 038815 392 -PA-------PETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 392 -~~-------~~~~~lfD~vilL~~G~i 411 (1436)
|. ..+...+|.|++|+.++.
T Consensus 374 ~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 374 RPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 156778999999987754
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5e-07 Score=110.79 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCcccEEEEcCccCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMD 233 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG--~~~~~~~~~G~I~~~G~~~~ 233 (1436)
.+++.+..+..++|.|++||||||+|++|.. ..... .|+|.+.+.|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCc
Confidence 3677788899999999999999999999875 23332 467766665543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-06 Score=95.30 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=62.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP 982 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~ 982 (1436)
++|++++|+|+||+||||++..|++.... ..| +.++++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47999999999999999999999985321 012 13455555442 2345555543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHH
Q 038815 983 PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062 (1436)
Q Consensus 983 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~ 1062 (1436)
.+++... ...+. +.-+.+|+ .+.+|+++++| |+|+|......+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1222111 01222 22344444 45999999999 99999876655554443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-08 Score=115.01 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=79.1
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCC-CCCCCHHH
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIH-SPLVTVYE 971 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~-~~~lTv~E 971 (1436)
.+|+++++.+++|++++|.||||||||||+++|+|.. .|.+..-..+. ..+...+|+++|..++ +..++...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4799999999999999999999999999999999853 34554411111 1112235666665432 22222211
Q ss_pred HHHHhhhhc-CCCCCCHHHHHHHHHHHHHH---cCCCc-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 038815 972 SLLYSAWLR-LPPEVDSETRKMFIEEIMEL---VELNP-LR---QSLV--G--LPGVSGLSTEQRKRLTIAVELVANPSI 1039 (1436)
Q Consensus 972 ~l~f~a~lr-~~~~~~~~~~~~~v~~~l~~---l~L~~-~~---~~~v--g--~~~~~~lSgGqrkRl~ia~~L~~~p~i 1039 (1436)
.+ .| .... ........+...++- +.+.. .. +.+. | ......+++|.++|+..+++++.+|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 11 1000 110001122333320 00110 00 1110 0 001245889999999998888889998
Q ss_pred ce-ecCCCC
Q 038815 1040 IF-MDEPTS 1047 (1436)
Q Consensus 1040 l~-lDEPTs 1047 (1436)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 75 999997
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-07 Score=98.74 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHHHh
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYISQHDNHIGEMTVRETLAF 262 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 262 (1436)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 78899987764321 11235778887666666677777654
Q ss_pred h
Q 038815 263 S 263 (1436)
Q Consensus 263 ~ 263 (1436)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.7e-06 Score=94.29 Aligned_cols=39 Identities=31% Similarity=0.237 Sum_probs=22.9
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH-CCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 930 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La-g~~~ 930 (1436)
.+..+++|+.+++|++++|+||||||||||+++|+ |...
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35789999999999999999999999999999999 8753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-06 Score=98.22 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=36.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.|
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D 141 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAAD 141 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccc
Confidence 4446789999999999999999999999998764 6778776543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.92 E-value=7.5e-06 Score=96.52 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999888886543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-06 Score=100.47 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.8
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-06 Score=95.56 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=31.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
...++|++++|+||||||||||+++|++.. |.+.++|...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 455789999999999999999999999853 6678887543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=92.26 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+.+.+-++||+++.|.|++|+|||||+.-++.... . .| ..+.|+. ..++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEE------SSSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEe------CCCCHHHHH
Confidence 4677777899999999999999999999988875321 0 11 1123322 113333222
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
.+.......+.+.++.+ ..||.+|.+|++.|...+.++++.+.|+|+..+
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si---- 140 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI---- 140 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----
Confidence 11111111222222222 249999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHc--CCEEEEEe
Q 038815 1054 AAIVMRTVKNTVET--GRTVVCTI 1075 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~--g~tvi~t~ 1075 (1436)
..|...++++.+. |..+|++=
T Consensus 141 -~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 141 -EQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEe
Confidence 3566666666543 56777774
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.1e-06 Score=86.33 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=33.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.5e-06 Score=97.14 Aligned_cols=81 Identities=14% Similarity=0.036 Sum_probs=62.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC---------c---cceEEEE-cC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE---------P---QRVAAYI-SQ 246 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~---~~~~~yv-~Q 246 (1436)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.|..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789999887763211 0 3457888 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 038815 247 HDNHIGEMTVRETLAFS 263 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~ 263 (1436)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 76666666778887664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.72 E-value=8.7e-07 Score=97.84 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.5
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-----------ccccceEEEeccC
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-----------ETFTRISGYCEQN 960 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 960 (1436)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 89999999999999999999996542 35778888765411 1234568898884
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=5.8e-05 Score=86.89 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=39.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCc
Confidence 677887 99999999999999999999999998764 78888877653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=87.28 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
++++|++++|+||||||||||++.|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.3e-05 Score=90.50 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceec-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVKNTVETGRTVVCTI--HQPS 1079 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~--Hqps 1079 (1436)
..+|++|++++. +.+..+++-++++| +|++|+|......+.+.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 458999998876 55555677788999 99999999988888887776544 67788888 7754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.66 E-value=3e-05 Score=91.85 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-------C-CcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCHH---HHHH
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSS-------L-KVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR---ETLA 261 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~-------~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 261 (1436)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. ...+.|++.|.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986410 0 24789999886431 112345544422 11221 1221
Q ss_pred hhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCCCCHHH
Q 038815 262 FSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341 (1436)
Q Consensus 262 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 341 (1436)
.......+-.-++. .+++ .. ..+....+..+++.+++.+..-..|+|+ +.-+|+|+
T Consensus 254 ~~~~aD~il~VvD~--------------s~~~-~~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVIDS--------------TFSE-NL--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEET--------------TSCH-HH--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEEC--------------CCCc-ch--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 11000000000000 0000 00 0011122456678888765543445554 33478888
Q ss_pred HHHHhhhhhhh--h-he--e-CCCCCCCHHHHHHHHHHHHHHHH
Q 038815 342 KRRVTTGPALA--L-FM--D-EISNGLDSSTTFQIVNSIRQNIH 379 (1436)
Q Consensus 342 rkRvsia~a~v--l-ll--D-EptsgLDs~t~~~i~~~l~~~~~ 379 (1436)
++|+.++.... + .- + +|+|++|.....++.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 88877652111 1 10 1 89999999999999998887654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.9e-06 Score=91.93 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=42.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEE--EEcCccCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRV--TYNGHNMD 233 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I--~~~G~~~~ 233 (1436)
..+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 3445566667778999999999999999999999999985 2 6777 78876543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.59 E-value=1.7e-05 Score=85.67 Aligned_cols=40 Identities=28% Similarity=0.057 Sum_probs=25.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+...+++|||+.+++|+.++|+|+|||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999876
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.59 E-value=5.3e-06 Score=93.37 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=45.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCcccEEE--------EcCccCCCCC----ccceEEE
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA---GKLDSSLKVSGRVT--------YNGHNMDEFE----PQRVAAY 243 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~La---G~~~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~y 243 (1436)
.++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 887766 89998 8888764321 1245667
Q ss_pred EcCC
Q 038815 244 ISQH 247 (1436)
Q Consensus 244 v~Q~ 247 (1436)
++|.
T Consensus 92 ~~~~ 95 (252)
T 4e22_A 92 RFVS 95 (252)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.50 E-value=8.1e-06 Score=91.58 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.3
Q ss_pred eeEEece-eeeeecccchhhcccccCceEEeeceEeeEeC---CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 866 SLTFDEV-VYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 866 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.++|+ ++.++ +...+|+|+|+.+++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4677787 66541 124589999999999 9999999999999999999999753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=3.7e-05 Score=81.69 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEc
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYN 228 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~ 228 (1436)
+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987532 35666544
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.3e-05 Score=98.50 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCT-IHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t-~Hqps~~if~~FD~ 1088 (1436)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++ .++-+.|++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 3478999999999999999999999999996 999887777776666554445677775 7754 566667775
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.44 E-value=1e-05 Score=90.78 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=36.7
Q ss_pred ccceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 176 KHLTILKDVSGIIRP---GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~---Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
...++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999 99999999999999999999999753
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.43 E-value=1.9e-06 Score=105.88 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=79.4
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCC-CCCCCCH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDI-HSPLVTV 969 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~-~~~~lTv 969 (1436)
+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|...... ...+.+++++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 578889999999 89999999999999999998653 35677887543211 01122344555432 3444555
Q ss_pred HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCC
Q 038815 970 YESLLYSAWLRLP-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047 (1436)
Q Consensus 970 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTs 1047 (1436)
.|.+..-...+.. .....++..+.+++++. .+||||+++..|+++...+|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555322111110 00112333444555543 2678888888888888888887 788764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.42 E-value=5.2e-05 Score=81.85 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.5
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...++|||+.+++|++++|+|++||||||+.+.|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999753
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00022 Score=84.87 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=35.3
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCC
Q 038815 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE---TGRTVVCTIHQPS 1079 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~t~Hqps 1079 (1436)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45779999999876 88888888888876655 5778999999874
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.9e-05 Score=79.00 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.5
Q ss_pred eceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 896 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 896 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=4.7e-05 Score=97.38 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=25.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+++|..++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45778999999999999999999999964
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.33 E-value=1.7e-05 Score=90.57 Aligned_cols=48 Identities=33% Similarity=0.532 Sum_probs=42.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 35789999999999 99999999999999999999874 68999988764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=6.6e-05 Score=83.10 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=33.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..++|++++|.|++|||||||+++|+|. .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3468999999999999999999999997 57888887754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=3.1e-05 Score=86.96 Aligned_cols=48 Identities=33% Similarity=0.532 Sum_probs=42.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 35789999999999 99999999999999999999874 68888888654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00066 Score=78.31 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=83.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 981 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 981 (1436)
+++| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++... ++.+ .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 8999999999999999999996420 0 11211 123345667777764321 1101 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC--cccccccC-CCCCCCCCHHHHHHHHHHHHHh--hCCCcceecCCCCCCCHHH-HH
Q 038815 982 PPEVDSETRKMFIEEIMELVELN--PLRQSLVG-LPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AA 1055 (1436)
Q Consensus 982 ~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg-~~~~~~lSgGqrkRl~ia~~L~--~~p~il~lDEPTsgLD~~~-~~ 1055 (1436)
|.. ..+.+ ...++.+...-.. ...|..+= .+... +|.|++ .++..+. ..|.++++ +.+|... ..
T Consensus 64 pG~-~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 64 PGL-HMEEK-RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp SSC-CHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred cCC-Cccch-hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 111 10000 0111111000000 11111110 01123 899887 4566666 67888888 7888876 56
Q ss_pred HHHHHHHHHHHc-CC--EEEEEecCCCHHHHHHhhhhcC
Q 038815 1056 IVMRTVKNTVET-GR--TVVCTIHQPSIDIFESFDEAIP 1091 (1436)
Q Consensus 1056 ~i~~~l~~~~~~-g~--tvi~t~Hqps~~if~~FD~~~~ 1091 (1436)
.+.+.++++++. |. .+.+++|+- ..+-+++|....
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~~ 171 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHHH
Confidence 777888887764 43 555566653 456677777443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00063 Score=79.98 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=26.7
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999988863
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=83.32 Aligned_cols=130 Identities=11% Similarity=0.138 Sum_probs=79.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+++.+-++||+++.|.|++|+|||||+.-++..... +| ..+.|+.= .++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 57777788999999999999999999998888742100 01 11233321 13333322
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~ 1053 (1436)
. +.......+.+.++.+ | ...||.+|++|+..|...+.++++.+.|+|+..
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred H------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 1 1111111111111211 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHc-CCE--EEEEec
Q 038815 1054 AAIVMRTVKNTVET-GRT--VVCTIH 1076 (1436)
Q Consensus 1054 ~~~i~~~l~~~~~~-g~t--vi~t~H 1076 (1436)
...|...++++.++ |.. +|++=|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34456666666543 666 777644
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00045 Score=81.80 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=27.0
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+|+++++.++ .++|+|++|||||||++.|+|..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 47888888888 89999999999999999999953
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.26 E-value=3.5e-05 Score=91.38 Aligned_cols=44 Identities=34% Similarity=0.295 Sum_probs=39.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY 227 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~ 227 (1436)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999964 577765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00011 Score=78.05 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=29.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEc
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS 941 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~ 941 (1436)
.+|++++|+||||||||||++.|++.... ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 36899999999999999999999986532 134555443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=79.11 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++|++++|+||||||||||++.|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999976
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.21 E-value=3.1e-05 Score=87.04 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=43.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---CCCCCCeeEEEEE--------EcCeeccc----ccccceEEEeccCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSIT--------ISGYLKKQ----ETFTRISGYCEQND 961 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~La---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~d 961 (1436)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 7543 4567777 77765422 23455678888653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=5.6e-05 Score=83.72 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=35.2
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
+-++..++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34456689999999999999999999999986 25677777653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00015 Score=78.90 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.20 E-value=7.9e-05 Score=80.65 Aligned_cols=41 Identities=24% Similarity=0.101 Sum_probs=34.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988654 6777776554
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00074 Score=78.73 Aligned_cols=139 Identities=20% Similarity=0.198 Sum_probs=75.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
+-+++|+++.|.||+|+|||||...++.........| |. ...+.|+.-+..+ ...+-......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 6799999999999999999999998875321000000 00 0122333322211 111111111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHh---hCCCcceecCCCCCCCH----
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA---- 1051 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG-qrkRl~ia~~L~---~~p~il~lDEPTsgLD~---- 1051 (1436)
. .+. +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 111 1222211 111 123444 346677788887 56899999999986532
Q ss_pred ----H----HHHHHHHHHHHHHHc-CCEEEEEecC
Q 038815 1052 ----R----AAAIVMRTVKNTVET-GRTVVCTIHQ 1077 (1436)
Q Consensus 1052 ----~----~~~~i~~~l~~~~~~-g~tvi~t~Hq 1077 (1436)
. ....+++.|+++++. |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 1 124556666666654 8888888664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=77.00 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999864 6677776543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.17 E-value=5.9e-05 Score=87.73 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=38.1
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 34789999999999999999999999999999985321 13566666544
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00033 Score=85.57 Aligned_cols=34 Identities=38% Similarity=0.660 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 456667777777 8899999999999999999964
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00016 Score=77.83 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999865
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=76.55 Aligned_cols=44 Identities=32% Similarity=0.194 Sum_probs=36.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 253 (1436)
.+++|++++|+|+||||||||.+.|++.++ .+.+++|++.+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 356799999999999999999999999863 15788888766543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=7.5e-05 Score=80.67 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEE--EEcCee
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSI--TISGYL 944 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i--~i~g~~ 944 (1436)
...+.++...++|++++|+||||||||||.+.|+++.. ..|.+ .++|..
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 34566677778999999999999999999999998642 12444 777643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00027 Score=75.52 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-----C---CcccEEEEcCccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSS-----L---KVSGRVTYNGHNM 232 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~-----~---~~~G~I~~~G~~~ 232 (1436)
.++|+|+||||||||++.|+|...+. . ..+|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 68999999999999999999986541 0 0378999998653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=75.79 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHH----------HHHHHHHHHHHHH----cCCEEEEEecCCC---HHH
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARA----------AAIVMRTVKNTVE----TGRTVVCTIHQPS---IDI 1082 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~----------~~~i~~~l~~~~~----~g~tvi~t~Hqps---~~i 1082 (1436)
+++++.|..++.+...+|.+||+||+.+-++... ...++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3567777777888888999999999987765322 2233333333211 2346788898873 344
Q ss_pred HHHhhh
Q 038815 1083 FESFDE 1088 (1436)
Q Consensus 1083 f~~FD~ 1088 (1436)
...||.
T Consensus 177 ~~R~~~ 182 (297)
T 3b9p_A 177 LRRFTK 182 (297)
T ss_dssp HHHCCE
T ss_pred HhhCCe
Confidence 444544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00028 Score=76.70 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=75.07 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=27.0
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-.+++|++++|+|+||||||||.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00014 Score=90.49 Aligned_cols=42 Identities=36% Similarity=0.436 Sum_probs=36.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc-EEE-EcCcc
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG-RVT-YNGHN 231 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G-~I~-~~G~~ 231 (1436)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 46799999999999999999999999999875 55 675 77754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.93 E-value=7.5e-05 Score=86.60 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00033 Score=85.28 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=38.3
Q ss_pred hCCCcceecCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1035 ANPSIIFMDEPTSGLDA-RAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
.+|++||+||+..-.+. .+...+..++..+.+.|+.||+++|.|..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 38999999999887764 67778888888887788999999998654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00037 Score=72.93 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=69.96 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=24.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+.+..+.+| +++|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00055 Score=79.86 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=32.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
..-|+.+.+-++||+++.|.|+||+|||||+..++...
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44577777779999999999999999999999988754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00068 Score=69.66 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.4
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
.+..+.+| +++|+|||||||||+|++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455566 99999999999999999986
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00057 Score=73.52 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998643
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00082 Score=87.39 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHHhhhhhh-----hhheeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 334 IRGISGGQKRRVTTGPAL-----ALFMDEISN-GLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~-----vlllDEpts-gLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
+.-+|+|+.+|..++.+. ++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 335899999998875443 599999996 9998877777776654321 23455666677777777788753
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0006 Score=73.19 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----CCC---CcccEEEEcCccC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD-----SSL---KVSGRVTYNGHNM 232 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~-----~~~---~~~G~I~~~G~~~ 232 (1436)
.++|+|+||||||||++.|+|... |+. ..+|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 579999999999999999999753 221 1268899988653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00012 Score=86.16 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=42.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCc
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGH 230 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 230 (1436)
...+++++++.+++|..++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 446788888888999999999999999999999999987653 566655443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00071 Score=71.04 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=29.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCc
Confidence 579999999999999999999999753 45666663
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0043 Score=73.21 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhh----hhhhhhhee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 038815 335 RGISGGQKRRVTT----GPALALFMD-EISNGLDSSTTFQIVNSIRQNIHILNGTAVISL 389 (1436)
Q Consensus 335 rgLSGGqrkRvsi----a~a~vlllD-EptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~ 389 (1436)
..+|+||+|++.- +.+.++++| ++..|+|......+++.++.... +..+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 3589999888753 334468999 99999999988888877776432 44555543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00055 Score=80.64 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=34.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987664 67787766554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0005 Score=81.42 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00072 Score=83.05 Aligned_cols=48 Identities=33% Similarity=0.528 Sum_probs=42.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 233 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 233 (1436)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~ 101 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFV 101 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHH
Confidence 4688999999999 99999999999999999999874 678889887653
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00093 Score=69.85 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00083 Score=85.88 Aligned_cols=47 Identities=32% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 234 (1436)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 456789999999999999999999999765431 236777 56655433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00067 Score=71.63 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=31.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEEcCccC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG--RVTYNGHNM 232 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~~ 232 (1436)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998743 34 566665443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0029 Score=66.15 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=74.02 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++++.-+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999854
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0011 Score=73.13 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.3
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 180 ILKDVSGIIR---PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 180 iL~~vs~~i~---~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
=|.++|+.+. +|.+++|.|+|||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677777776 899999999999999999999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00029 Score=87.97 Aligned_cols=48 Identities=27% Similarity=0.480 Sum_probs=39.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34566777766 89999999999999999999999998664 67776665
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=66.20 Aligned_cols=27 Identities=41% Similarity=0.671 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00031 Score=83.16 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=38.4
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCC
Q 038815 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHI 251 (1436)
Q Consensus 172 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 251 (1436)
+.....+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.+...........+..|.+...
T Consensus 24 ~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~ 94 (361)
T 2qag_A 24 PNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVK 94 (361)
T ss_dssp HHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEE
T ss_pred hHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcc
Confidence 33344556788888877 999999999999999998874432 444433333221110011223444443333
Q ss_pred CCCCHHHHHHh
Q 038815 252 GEMTVRETLAF 262 (1436)
Q Consensus 252 ~~lTV~E~l~f 262 (1436)
..+++.+|.-+
T Consensus 95 ~~l~i~DTpG~ 105 (361)
T 2qag_A 95 LRLTVVDTPGY 105 (361)
T ss_dssp EEEEEEC----
T ss_pred cceEEEEeccc
Confidence 34555555544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0039 Score=75.06 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=70.54 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=77.03 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC------C---CCcccEEEEcCccCCCCC---ccceEEEEcCCCCCCCCCCHHHH
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDS------S---LKVSGRVTYNGHNMDEFE---PQRVAAYISQHDNHIGEMTVRET 259 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~------~---~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 259 (1436)
-.++|+|+||+|||||++.|+|.... . ...+|.+.++|.++.-.+ .++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 024789999997642221 12223333344334444445555
Q ss_pred HHh
Q 038815 260 LAF 262 (1436)
Q Consensus 260 l~f 262 (1436)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00095 Score=78.08 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00039 Score=76.28 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEE
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTY 227 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~ 227 (1436)
+..++|+|||||||||+.+.|++.+.-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876211112677665
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.009 Score=70.74 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.8
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 190 PGS--MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 190 ~Ge--~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++. .++|.||||+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00081 Score=77.91 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.7
Q ss_pred eEEeeceEeeEeCCc------EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge------~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|++++..+..++ ++||+||||||||||+++|++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777777666 99999999999999999999853
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0086 Score=66.12 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFD 1087 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD 1087 (1436)
+.|.-.+.. ...+.+-+++++||.-. ++|......+++.+......-++++++.--|...+-+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 345544442 23477889999999965 7887776555555544433345777776666665555554
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.007 Score=73.63 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=74.7
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESL 973 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 973 (1436)
-|+.+.+-++||+++.|.|++|+|||||..-++...... .| ..+.|+.= .++..+-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g---------~~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--------EG---------VGVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TC---------CCEEEEES------SSCHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CC---------CeEEEEEC------CCCHHHHH
Confidence 466777779999999999999999999988887532100 01 01223221 12222211
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHH-HcC--CCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCC
Q 038815 974 LYSAWLRLPPEVDSETRKMFIEEIME-LVE--LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050 (1436)
Q Consensus 974 ~f~a~lr~~~~~~~~~~~~~v~~~l~-~l~--L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD 1050 (1436)
..++. ..+ +..+.+ ..|+.++.+|+.-|...+.+.++.+.|+|.. +
T Consensus 246 ---------------------~R~~~~~~~i~~~~l~~--------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s 294 (444)
T 2q6t_A 246 ---------------------LRMMCSEARIDMNRVRL--------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T 294 (444)
T ss_dssp ---------------------HHHHHHHTTCCTTTCCG--------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B
T ss_pred ---------------------HHHHHHHcCCCHHHHhC--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C
Confidence 11111 122 222221 2489999999999998888888888887643 3
Q ss_pred HHHHHHHHHHHHHHHH-cCCEEEEE
Q 038815 1051 ARAAAIVMRTVKNTVE-TGRTVVCT 1074 (1436)
Q Consensus 1051 ~~~~~~i~~~l~~~~~-~g~tvi~t 1074 (1436)
. ..+...++++.+ .|..+|++
T Consensus 295 ~---~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 295 L---MEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp H---HHHHHHHHHHHHHSCCCEEEE
T ss_pred H---HHHHHHHHHHHHHcCCCEEEE
Confidence 3 344555666553 46666665
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=68.43 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.2
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
.++.+.|| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34455565 99999999999999999885
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0013 Score=71.53 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=34.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--EEEEcCcc
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSG--RVTYNGHN 231 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 231 (1436)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4578999999999999999999999988643 56 67776544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0045 Score=65.81 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=28.7
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC------CCCeeEEEEEEcCe
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGSITISGY 943 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~------~~~~~~G~i~i~g~ 943 (1436)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4788999888887 78999999999999999999742 22334566666663
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.003 Score=68.35 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=24.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+.++.+.+ .+++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34445555 4999999999999999999863
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=21.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999888887 6699999999999999999984
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=69.81 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=25.8
Q ss_pred EeeceEeeEe---CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 894 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 894 iL~~vs~~i~---~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566666666 89999999999999999999999854
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.011 Score=68.46 Aligned_cols=47 Identities=4% Similarity=0.078 Sum_probs=35.2
Q ss_pred hhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1034 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1034 ~~~p~il~lDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
..++.+||+||+-. .-|..+...+...+..+.+.|..+|++++.|..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234467788888888877778888888876543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0026 Score=68.72 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.003 Score=67.02 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999976
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.018 Score=66.81 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.8
Q ss_pred eeceE-eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs-~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+- +-+++|+++.|.|++|+|||||..-++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34433 6789999999999999999999988874
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0015 Score=70.03 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=29.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 46788888777775 689999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0032 Score=66.41 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865322224777776654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0022 Score=79.72 Aligned_cols=42 Identities=38% Similarity=0.578 Sum_probs=32.9
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE-EEE-EcCee
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-SIT-ISGYL 944 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G-~i~-i~g~~ 944 (1436)
.+++|++++|+|+||||||||+++|+|+... ..| .+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999996532 123 564 77743
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0023 Score=77.84 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=39.1
Q ss_pred hhhhhheeCCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-ecCCeEEEecCh
Q 038815 349 PALALFMDEISNGLDS-STTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGLIVYLGPR 417 (1436)
Q Consensus 349 ~a~vlllDEptsgLDs-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vil-L~~G~iv~~G~~ 417 (1436)
.+.+|++||+..-.+. .+...+...+..... .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 4568999999887764 566777788776543 4556666555444443222222221 334555544443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0069 Score=73.55 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.2
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
-|+.+.+-++||+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666789999999999999999999877764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.033 Score=61.43 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=28.4
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEec
Q 038815 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE--TGRTVVCTIH 1076 (1436)
Q Consensus 1035 ~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~t~H 1076 (1436)
.+++++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 36788888888888888666555555443322 1358888888
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0061 Score=65.40 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPP 983 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 983 (1436)
+..-+.|.||+|+|||||+++|+... .+.....-..+..+.+.--.......
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANEL----------------------------AKRNVSSLIVYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH----------------------------HTTTCCEEEEEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH----------------------------HHcCCeEEEEEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC--CCCCCHHHHHHHHHHH
Q 038815 984 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1061 (1436)
Q Consensus 984 ~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP--TsgLD~~~~~~i~~~l 1061 (1436)
.. .+.++.+ .++++|++||+ ...-|......+..++
T Consensus 105 ~~---------~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 TM---------NEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp CC---------HHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred hH---------HHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHHcCCEEEEEecCCCHHHHHHh
Q 038815 1062 KNTVETGRTVVCTIHQPSIDIFESF 1086 (1436)
Q Consensus 1062 ~~~~~~g~tvi~t~Hqps~~if~~F 1086 (1436)
......+..+|+|++.+..++.+.+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0019 Score=75.84 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.8
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999999999999999974
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0028 Score=67.25 Aligned_cols=29 Identities=41% Similarity=0.536 Sum_probs=26.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++|.++.|.|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999998754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0041 Score=67.09 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999998754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0081 Score=72.95 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC----------CCeeEEEEEEcCee
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGSITISGYL 944 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~----------~~~~~G~i~i~g~~ 944 (1436)
.++|+|+||+|||||+|.|+|... .....|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 11346888999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=65.25 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999853
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.015 Score=68.37 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred eeceE--eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs--~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 4689999999999999999999888775
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0031 Score=74.54 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 178 ~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0086 Score=67.91 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++.-+.|.||+|+|||||.++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0033 Score=75.51 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=38.9
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 182 KDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 182 ~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.|.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999998765 67888766543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.003 Score=70.80 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=32.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 345788999999999999999999999864 24566676543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0049 Score=67.38 Aligned_cols=56 Identities=20% Similarity=0.059 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEE--------cCeeccc----ccccceEEEeccC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSITI--------SGYLKKQ----ETFTRISGYCEQN 960 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~ 960 (1436)
+.+++|+|||||||||+.+.|++.... -...|++.. +|.+... ....+..|++.|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975311 123455554 4543321 1233456676664
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0043 Score=73.71 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 185 s~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345667888999999999999999999997
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0054 Score=66.09 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
+++|+|||||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0026 Score=79.49 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=38.2
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567777777 899999999999999999999998643 34577776664
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=64.60 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.3
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|+...+|..++|+|++||||||+.+.|+.+
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999965
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0032 Score=67.53 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 893 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888888887 4799999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=60.37 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0012 Score=76.95 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.7
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 180 ILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++++++..+++|+. ++|+|+|||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56667777778877 99999999999999999999764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.016 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0067 Score=71.35 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|..++|+|++|||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0079 Score=64.78 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
+.|+.+|..++..+..+|..+.++ ++.+++.....+.+.++.. .+.+||+.+|.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~ 114 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPL 114 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTT
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 678899999999888888765443 2345555555554444322 35688888875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0067 Score=67.83 Aligned_cols=46 Identities=35% Similarity=0.619 Sum_probs=30.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 232 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 232 (1436)
.++++++.+++| ++|.||||+|||||+++|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHH
Confidence 345555555555 8999999999999999999976421 355665443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0023 Score=73.43 Aligned_cols=44 Identities=25% Similarity=0.135 Sum_probs=36.4
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCcc
Q 038815 184 VSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231 (1436)
Q Consensus 184 vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 231 (1436)
+++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 666666 9999999999999999999999998654 5677776554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0069 Score=65.07 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.009 Score=63.03 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+|..++|.|+|||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0057 Score=71.61 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 183 ~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=62.47 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0074 Score=69.44 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999973
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0027 Score=74.30 Aligned_cols=41 Identities=29% Similarity=0.601 Sum_probs=35.9
Q ss_pred cceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 177 HLTILKDVSGIIRPGSM--TLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~--~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34578888888899998 999999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0028 Score=74.90 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34677888776 999999999999999998853
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=60.92 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=62.14 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0036 Score=72.91 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.6
Q ss_pred EEeeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCC
Q 038815 893 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++.++..+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367888888999998 999999999999999999985
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0098 Score=63.87 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=69.84 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=26.5
Q ss_pred eEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 898 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 898 vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+-+.+..|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456778899999999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0098 Score=63.87 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.025 Score=66.75 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.047 Score=64.31 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999753
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=61.67 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.5
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
...+|.+++|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999999753
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.011 Score=68.09 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=30.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
++++.-++|.||||+|||||.++|++... .+-+.+++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG 82 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh
Confidence 46788999999999999999999999864 34555554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.012 Score=63.62 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.7
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++|.+++|+|++||||||+.+.|++..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999999754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.015 Score=61.62 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++.++.|.|+|||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=66.06 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG 229 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G 229 (1436)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467999999999999999999987653 24455554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.014 Score=62.65 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999975
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=60.81 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=60.71 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+|.+++|+|++||||||+.+.|+.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.02 Score=59.77 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=63.43 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=60.67 Aligned_cols=38 Identities=34% Similarity=0.331 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCCC-CCeeEEEEEEcCe
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGSITISGY 943 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~~-~~~~~G~i~i~g~ 943 (1436)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 1223466666553
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.033 Score=60.98 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCCHHHHHHhhhhcCCcccCCCCCCccchh
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH---------QPSIDIFESFDEAIPGVQKIKDGCNPATWM 1106 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H---------qps~~if~~FD~~~~g~~~~~~~~NPAd~~ 1106 (1436)
+++++++||.-. |+. .+++.++.+++.|.+||++-| .++.++.+.-|....--.-|..-.+||.+-
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~ 163 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHS 163 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEE
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCcccee
Confidence 489999999964 654 355666777777999999999 567788888887332111244334566665
Q ss_pred hhcc
Q 038815 1107 LEVT 1110 (1436)
Q Consensus 1107 l~v~ 1110 (1436)
..+.
T Consensus 164 ~r~~ 167 (223)
T 2b8t_A 164 LRKI 167 (223)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=60.51 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=63.44 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 188 IRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 188 i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=59.11 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.021 Score=60.15 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=60.80 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=58.86 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 038815 193 MTLLLGPPSSGKTTLLLAL 211 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~L 211 (1436)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=59.79 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999998764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=60.66 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987653
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=59.00 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038815 192 SMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG 213 (1436)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.051 Score=62.42 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLL 974 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 974 (1436)
|+.+-+-+.+|..+.|.||+|+|||||...++.. .|..---+.......
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~----------------------------- 161 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEP----------------------------- 161 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCS-----------------------------
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhh-----------------------------
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHH
Q 038815 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054 (1436)
Q Consensus 975 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~ 1054 (1436)
+..++.+..+.+...+..+.+.+++++||-++=-.....
T Consensus 162 -----------------------------------------v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 162 -----------------------------------------LSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGG 200 (331)
T ss_dssp -----------------------------------------STTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-----
T ss_pred -----------------------------------------hhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccccc
Q ss_pred --------HHHHHHHHHH----HHcCCEEEEEecCCCHH
Q 038815 1055 --------AIVMRTVKNT----VETGRTVVCTIHQPSID 1081 (1436)
Q Consensus 1055 --------~~i~~~l~~~----~~~g~tvi~t~Hqps~~ 1081 (1436)
..+.+.++++ .+.|.|+|++++..+.+
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s~d 239 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSND 239 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSSCS
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcccc
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.15 Score=62.84 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.6
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+.+.+-+++|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455555689999999999999999999877764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=62.30 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999954
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.024 Score=63.39 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++|+||||||||||-+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.18 Score=58.27 Aligned_cols=105 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLP 982 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~ 982 (1436)
.|..-+.|.||+|+|||||.++++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCC-------CCCCCHHHHH
Q 038815 983 PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1055 (1436)
Q Consensus 983 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEP-------TsgLD~~~~~ 1055 (1436)
.+....+|.. .+.-|-.+..+-..+|.|||+||. ..+.......
T Consensus 81 ----------------------~l~~~~~g~~-------~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLGES-------EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCCSC-------HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhhHH-------HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HHcCCEEEEEecCC
Q 038815 1056 IVMRTVKNT-----VETGRTVVCTIHQP 1078 (1436)
Q Consensus 1056 ~i~~~l~~~-----~~~g~tvi~t~Hqp 1078 (1436)
.+-+.+..+ ...+..||+++..|
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCc
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.023 Score=59.66 Aligned_cols=26 Identities=46% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+..++|.|+|||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998554
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.026 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.025 Score=62.35 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.0064 Score=71.12 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=32.6
Q ss_pred EEeeceEeeEeCCcE--EEEEcCCCCcHHHHHHHHHCCC
Q 038815 893 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 893 ~iL~~vs~~i~~Ge~--~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888889988 9999999999999999999853
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.019 Score=64.15 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+++|+||||||||||-+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.03 Score=58.99 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+|.++.|.|++||||||+.+.|+.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.029 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.029 Score=59.36 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999853
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.021 Score=63.70 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=23.3
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++++++...+| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 34444555555 8899999999999999999753
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.097 Score=61.68 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHC--CCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 979 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 979 (1436)
+++|+++.|.|++|+|||||...++. ...++.+ ++++..........+..|.-.++-......|+.+.+.....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCC----------
Q 038815 980 RLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL---------- 1049 (1436)
Q Consensus 980 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgL---------- 1049 (1436)
.... +++++++|..++=.
T Consensus 148 ~~~~----------------------------------------------------~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 148 VRSG----------------------------------------------------AIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp HTTT----------------------------------------------------CCSEEEEECTTTCCCSTTC-----
T ss_pred HhcC----------------------------------------------------CCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCEEEEEec
Q 038815 1050 DA---RAAAIVMRTVKNT----VETGRTVVCTIH 1076 (1436)
Q Consensus 1050 D~---~~~~~i~~~l~~~----~~~g~tvi~t~H 1076 (1436)
|. ..++.+.+.++++ .+.+.+||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.026 Score=60.02 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999987654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.038 Score=64.73 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+-+++|+++.|.||||||||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999875
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.033 Score=60.59 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.032 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.036 Score=61.10 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.036 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.032 Score=58.28 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.033 Score=60.02 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999764
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.024 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987643
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.036 Score=60.16 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhc
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.047 Score=64.15 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|-.++|+|.||+|||||+++|+|..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.018 Score=64.39 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcC
Q 038815 901 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG 942 (1436)
Q Consensus 901 ~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g 942 (1436)
..+++.++.|+|+|||||||+.+.|+.+... +.+.++|
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEec
Confidence 4567889999999999999999999976432 2355565
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.35 E-value=0.038 Score=58.24 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.097 Score=72.41 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
=+++|++++|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999988653
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.042 Score=57.80 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++..+.|+|++||||||+.+.|+.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.034 Score=62.68 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|+||||||||++.|+|.
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.096 Score=52.88 Aligned_cols=44 Identities=2% Similarity=0.053 Sum_probs=31.1
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1080 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~ 1080 (1436)
+..+||+||.- .|+......+.+.+.+..+.+..+|++++.+..
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYAAG 118 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHH
Confidence 45689999975 577777788888777653345677777776533
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.032 Score=59.26 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.047 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+|.+++|.|++||||||+.+.|+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1436 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-15 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-16 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-17 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 2e-04 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 5e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 9e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 9e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 0.004 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (271), Expect = 6e-27
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISG 942
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +I +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 943 YLKKQETFTRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
+ T R G+ Q PL+T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1061 VKNTV-ETGRTVVCTIHQPSI 1080
+K E G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 86.8 bits (215), Expect = 2e-19
Identities = 46/253 (18%), Positives = 93/253 (36%), Gaps = 52/253 (20%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
++ + LK+V+ I+ G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 232 MDEFEPQRVA-------AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKREN 284
++ + + ++ Q N I +T E + + G + E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-------AMSGEE- 120
Query: 285 EAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRR 344
+ A E + L + + + +SGGQ++R
Sbjct: 121 -------------RRKRALECLKMAELEERFA--------------NHKPNQLSGGQQQR 153
Query: 345 VTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDL 399
V ALA + D+ + LDS T +I+ +++ ++ +G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 400 FDDIILLSDGLIV 412
+ II L DG +
Sbjct: 212 GERIIYLKDGEVE 224
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 107 bits (268), Expect = 2e-26
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 14/205 (6%)
Query: 878 MPQEMKLQ----GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 931
M ++ L+ V+ + + G+ G + L+G +GAGKTT + +AG R
Sbjct: 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
Query: 932 GYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRK 991
G I + + P +TVYE+L+ A+ R E ++
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKR 117
Query: 992 MFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
L + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 118 DLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP 172
Query: 1052 RAAAIVMRTVKNTVETGRTVVCTIH 1076
+ V ++ + G T++
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQ 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 76.9 bits (189), Expect = 6e-16
Identities = 48/251 (19%), Positives = 82/251 (32%), Gaps = 47/251 (18%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLD-SSLKVSGRVTYNGHNMDEFE 236
+ +K + + G + L+G +GKTT L A+AG + K+ +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 237 PQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ A + + E+TV E L A + + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE------GIKRDLEWI---------- 122
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+ L L G +SGG+++ + G AL
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L MDE S GL ++ I++ GT ++ + Q A + +L G I
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 412 VYLGPRELVLD 422
V G +LD
Sbjct: 218 VLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 105 bits (263), Expect = 9e-26
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 881 EMKLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 936
E+KL+ + + +N ++ + G L+G SG GKTT + ++AG T G
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG---- 61
Query: 937 SITISGY-LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIE 995
I + R Q+ P +TVYE++ + ++ + + +
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVR 118
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
EL+++ L + LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 119 WAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 1056 IVMRTVKN-TVETGRTVVCTIHQPS 1079
+ +K + T + H
Sbjct: 174 AMRAEIKKLQQKLKVTTIYVTHDQV 198
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (259), Expect = 3e-25
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 59/271 (21%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
T + ++ I+ G +LLGP GKTT L +AG + + GR+ + ++ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 238 Q-RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ R + + Q MTV E +AF + + E+DKR A
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD-----EIDKRVRWA---------- 120
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
++L ++ + +SGGQ++RV A+
Sbjct: 121 -------------------AELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L MDE + LD+ + I++ + I + E + D I +++ G +
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 412 VYLG-PRELVLDFFESMGFKCPERKGVADFL 441
+ +G P E+ + P VA F+
Sbjct: 216 LQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (264), Expect = 1e-25
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQETFTR 952
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 953 ISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF----------IEEIMELVE 1002
Q +TV E+LL ++S K + +I+E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 1003 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1062
L+ L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1063 NTVETGRTVVCTIH 1076
G T + H
Sbjct: 195 ELKAKGITFLIIEH 208
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.2 bits (226), Expect = 9e-21
Identities = 57/254 (22%), Positives = 89/254 (35%), Gaps = 40/254 (15%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
L VS + G +TL++GP SGK+TL+ + G L + GRV + ++ EP
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 238 ----QRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPD 293
Q + EMTV E L C P
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP---------------------GESPL 112
Query: 294 IDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA- 352
+F K + +E L+ L L D G+ +SGGQ + V G AL
Sbjct: 113 NSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 353 ----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 409 GLIVYLGPRELVLD 422
G I+ G E +
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99 bits (249), Expect = 3e-24
Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 17/192 (8%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQET 949
DK VL ++ G + G +G GKTTL+ ++ + G I +G
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNG--VPITK 67
Query: 950 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQS 1009
+ + I ++V + L A L K I + +E VE+ L++
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETG 1068
+ LS +R+ +A L+ N I +D+P +D + V++++ + E G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 1069 RTVVCTIHQPSI 1080
++ + + S
Sbjct: 177 IVIISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 72.6 bits (178), Expect = 6e-15
Identities = 36/215 (16%), Positives = 71/215 (33%), Gaps = 53/215 (24%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+L+ ++ I G++ GP GKTTLL ++ L G + YNG + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGV--PITKVK 69
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
++ + +++V + L A GV + + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----L 353
L+ + + + +S G RRV L
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVIS 388
+D+ +D + +++ SI + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99 bits (249), Expect = 2e-23
Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRIS 954
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 955 GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 1014
+C Q P T+ E++++ E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMP-GTIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1074
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1075 IHQPS 1079
+
Sbjct: 215 TSKME 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.3 bits (216), Expect = 3e-19
Identities = 52/281 (18%), Positives = 94/281 (33%), Gaps = 65/281 (23%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
+LK+++ I G M + G SGKT+LL+ + G+L++S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
++ SQ + I T++E + F ++
Sbjct: 99 -VSFCSQ-FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LF 354
+ +T++G E +SGGQ+ R++ A+
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 355 MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYL 414
+D LD T Q+ S + N T ++ + E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFY 238
Query: 415 G-PREL-------VLDFFESMGFKCPERKGVADFLQEVTSR 447
G EL F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 98.4 bits (245), Expect = 4e-23
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 20/196 (10%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQETFT 951
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 952 RIS-----------GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMEL 1000
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 1001 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1060
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1061 VKNTVETGRTVVCTIH 1076
++ E G+T+V H
Sbjct: 192 MQQLAEEGKTMVVVTH 207
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 81.8 bits (202), Expect = 2e-17
Identities = 59/286 (20%), Positives = 98/286 (34%), Gaps = 71/286 (24%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP 237
+LK VS R G + ++G SGK+T L + S G + NG N++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 238 QRVA----------------AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDK 281
+ + QH N MTV E + + + L K
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI---------QVLGLSK 122
Query: 282 RENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQ 341
+ + A + YL +G+D A + +SGGQ
Sbjct: 123 HD--------------ARERALK----------YLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 342 KRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396
++RV+ ALA L DE ++ LD +++ ++Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 397 YDLFDDIILLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442
+ +I L G I G E V F P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 96.6 bits (240), Expect = 8e-23
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 890 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQ 947
K +L G+S G + L+G +GAGKTT + +++ + + G +T + +++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 948 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR 1007
++ Y + + E L + A S + +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 1008 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1067
+ V S S ++L IA L+ NP + +DEPTSGLD A V + +K +
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1068 GRTVVCTIH 1076
G T++ + H
Sbjct: 183 GLTILVSSH 191
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 84.7 bits (209), Expect = 1e-18
Identities = 57/276 (20%), Positives = 96/276 (34%), Gaps = 61/276 (22%)
Query: 178 LTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNG--HNMDEF 235
ILK +S I G + L+GP +GKTT L ++ + S SG VT G +
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 236 EPQRVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
E +++ +Y+ + M E L F A S
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
E + + ++ GL + + S G R++ AL
Sbjct: 109 -----------EIEEMVERATEIAGLGEKI-----KDRVSTYSKGMVRKLLIARALMVNP 152
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
+DE ++GLD ++ ++Q T ++S E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGT 210
Query: 411 IVYLG-PRELVLDFFESMGFKCPERKGVADFLQEVT 445
IV G EL + + + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 886 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISG 942
+ LN VS G + ++G SGAGK+TL+ + R T G + ++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 943 YLKKQET-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV 1001
+ + T R G Q+ TV+ ++ L P+ + + R + E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLV 128
Query: 1002 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061
L S S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1062 KNTVE-TGRTVVCTIHQPSI 1080
K+ G T++ H+ +
Sbjct: 184 KDINRRLGLTILLITHEMDV 203
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 87.6 bits (217), Expect = 1e-19
Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 54/262 (20%)
Query: 172 PTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN 231
+ + L +VS + G + ++G +GK+TL+ + + G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 232 MDEFEPQRVA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENE 285
+ + I QH N + TV +A E+ +R E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRVTE 123
Query: 286 AGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRV 345
L ++GL D +SGGQK+RV
Sbjct: 124 L-----------------------------LSLVGLGDKHD-----SYPSNLSGGQKQRV 149
Query: 346 TTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400
ALA L DE ++ LD +TT I+ ++ L T ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 401 DDIILLSDGLIVYLGPRELVLD 422
D + ++S+G ++ V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 93.8 bits (233), Expect = 1e-21
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 11/190 (5%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ---ETFT 951
L ++ G AL+G SG+GK+T+ ++ G I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLR-QSL 1010
QN +++ R + M+ + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 1011 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1070
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRT 203
Query: 1071 VVCTIHQPSI 1080
+ H+ S
Sbjct: 204 SLVIAHRLST 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 83.0 bits (205), Expect = 6e-18
Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 43/248 (17%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
L++++ I G L+G SGK+T+ + D G + +GH++ E+
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85
Query: 239 RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
+ ++ ++ L N A + + +
Sbjct: 86 SLRNQVALVSQNV-----------------------HLFNDTVANNIAYARTEEYSREQI 122
Query: 299 KAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----L 353
+ AA + A + GL DT++G E +SGGQ++R+ AL L
Sbjct: 123 EEAA---RMAYAMDFINKMDNGL----DTIIG-ENGVLLSGGQRQRIAIARALLRDSPIL 174
Query: 354 FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVY 413
+DE ++ LD+ + I ++ + + + ++ T + D+I+++ DG+IV
Sbjct: 175 ILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGIIVE 230
Query: 414 LGPRELVL 421
G +L
Sbjct: 231 RGTHSELL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 3e-21
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 14/207 (6%)
Query: 881 EMKLQGVH----EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 936
++ + + D V+L+ ++ + + G + ++G SG+GK+TL ++ G
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENG 58
Query: 937 SITISGY---LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF 993
+ I G+ L R G Q D ++ +++ + +V +
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK--- 114
Query: 994 IEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
+ + + + + +GLS QR+R+ IA LV NP I+ DE TS LD +
Sbjct: 115 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
Query: 1054 AAIVMRTVKNTVETGRTVVCTIHQPSI 1080
++MR + + GRTV+ H+ S
Sbjct: 175 EHVIMRNMHKICK-GRTVIIIAHRLST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (192), Expect = 2e-16
Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 48/250 (19%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
IL +++ I+ G + ++G SGK+TL + +G+V +GH++ +P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 240 VAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ + DN + ++ + ++ + +
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMS----------------------VEKVIYA 112
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
K A + + L +T+VG++ +SGGQ++R+ AL
Sbjct: 113 AKLAGA-----------HDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKI 160
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L DE ++ LD + I+ ++ + I G VI + T D II++ G IV
Sbjct: 161 LIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIV 216
Query: 413 YLGPRELVLD 422
G + +L
Sbjct: 217 EQGKHKELLS 226
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.2 bits (229), Expect = 5e-21
Identities = 54/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)
Query: 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR 239
ILKD++ I G +G GK+TL+ + D + SG++ +GHN+ +F
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 240 VAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ I Q DN + TV+E + +P +
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILLG-------------------------RPTATDEEV 124
Query: 298 MKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA----- 352
++AA D+ ++ L DT VG E +SGGQK+R++
Sbjct: 125 VEAAKMAN-----AHDF---IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 353 LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIV 412
L +DE ++ LD + I ++ + + ++ T D I+++ +G IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIV 231
Query: 413 YLGPRELVLD 422
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 89.5 bits (222), Expect = 4e-20
Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 860 LPFEPHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 919
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 920 TLMDVLAGRKTGGYITGSITISGY--LKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA 977
TL++++ +G I I G+ R Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 978 WLRLPPEVDSETRKMFIEEIMELVELNPLRQSL-VGLPGVSG-----LSTEQRKRLTIAV 1031
P D E + E ++ + +L G G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+ NP I+ +DE TS LD + +I+ + + RT + H+ S
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS 214
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 882 MKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITIS 941
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G GSI +
Sbjct: 4 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 58
Query: 942 GYLKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIM 998
G + + T+++ Y Q V+ L + TR + ++
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVA 110
Query: 999 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDA 1051
+ L+ LS + +R+ +A ++ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1052 RAAAIVMRTVKNTVETGRTVVCTIHQPS 1079
+ + + + + G +V + H +
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLN 193
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-17
Identities = 51/259 (19%), Positives = 80/259 (30%), Gaps = 65/259 (25%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 239 RVA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
++A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
+ L + L LD +SGG+ +RV +
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 353 ---------LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403
L +DE N LD + + + G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 404 ILLSDGLIVYLGPRELVLD 422
LL G ++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.1 bits (226), Expect = 1e-20
Identities = 49/256 (19%), Positives = 106/256 (41%), Gaps = 47/256 (18%)
Query: 175 KKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 234
+ + +L+ ++ +RPG +T L+GP SGK+T+ L + G++ +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 235 FEPQ---RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPD 291
+E + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 292 PDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL 351
P ++ AA G + GL DT V + + +SGGQ++ V AL
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 352 A-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406
L +D+ ++ LD+++ Q+ + ++ + + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 407 SDGLIVYLGPRELVLD 422
G I G + +++
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (214), Expect = 4e-19
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 9/190 (4%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL---KKQETFT 951
L G++ RPG +TAL+G +G+GK+T+ +L G + + G +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
R Q ++ E++ Y L P ++ T + P
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRT 1070
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + E R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1071 VVCTIHQPSI 1080
V+ S+
Sbjct: 205 VLLITQHLSL 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.7 bits (217), Expect = 1e-19
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 14/202 (6%)
Query: 883 KLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITI 940
+LQ V + ++V+ ++ G +G SG GK+TL+ ++AG +T +G + I
Sbjct: 2 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI 59
Query: 941 SGYLKKQETFTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIME 999
G Q+ P ++V E++ + L + R + ++ E
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAE 116
Query: 1000 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1059
+++L L LS QR+R+ I LVA PS+ +DEP S LDA +
Sbjct: 117 VLQLAHLLDRK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 1060 TVKNTV-ETGRTVVCTIHQPSI 1080
+ GRT++ H
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVE 193
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 78.8 bits (194), Expect = 1e-16
Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 59/272 (21%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
+ + KD++ I G + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 237 PQRVA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDID 295
P + Q ++V E ++F + G +++R N+
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-----VINQRVNQV--------- 114
Query: 296 VFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA--- 352
+VL L D +SGGQ++RV G L
Sbjct: 115 --------------------AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 353 --LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410
+DE + LD++ Q+ I + L T + E L D I++L G
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 411 IVYLG-PRELVLDFFESMGFKCPERKGVADFL 441
+ +G P EL + P + VA F+
Sbjct: 209 VAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSITISGYLKKQETFT 951
L +S +P + A G SG GK+T+ +L + T G IT I E +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI--SLENWR 75
Query: 952 RISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLV 1011
G+ Q+ T+ E+L Y E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1071
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + ++ GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTT 191
Query: 1072 VCTIHQPS 1079
+ H+ S
Sbjct: 192 LVIAHRLS 199
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 79.9 bits (197), Expect = 5e-17
Identities = 53/250 (21%), Positives = 87/250 (34%), Gaps = 48/250 (19%)
Query: 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ 238
IL+D+S +P S+ GP GK+T+ L + +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 239 RVAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDV 296
+ I D+ I T+RE L + + +L + PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 297 FMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA---- 352
+T VG E ISGGQ++R+ A
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 353 -LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411
L +DE + LDS + + ++ ++ G + + T D I + G I
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 412 VYLG-PRELV 420
G ELV
Sbjct: 216 TGSGKHNELV 225
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.3 bits (203), Expect = 7e-18
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 16/205 (7%)
Query: 883 KLQGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSI 938
+L V + ++ + +S + G L+G SG GKTT + ++AG + G I
Sbjct: 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
Query: 939 TISGYLKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIE 995
+ +K R Q+ P +TVY+++ + LR P + + R +
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VR 121
Query: 996 EIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
E+ EL+ L L LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 122 EVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 1056 IVMRTVKNTV-ETGRTVVCTIHQPS 1079
+ +K + G T + H
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQV 201
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 74.6 bits (183), Expect = 3e-15
Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 63/277 (22%)
Query: 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE 236
+T ++++S ++ G +LLGP GKTT L +AG + S G++ + + E
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 237 PQRVAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIK 289
+ Q MTV + +AF + + V + E+D+R E
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-----EIDQRVREV--- 123
Query: 290 PDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
++LGL + R +SGGQ++RV G
Sbjct: 124 --------------------------AELLGLTELLN-----RKPRELSGGQRQRVALGR 152
Query: 350 ALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404
A+ MDE + LD+ ++ +++ L T + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIA 211
Query: 405 LLSDGLIVYLGPRELVLDFFESMGFKCPERKGVADFL 441
+++ G++ +G + V + P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.9 bits (199), Expect = 2e-17
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 891 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGYLKKQE 948
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 949 T--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL 1006
R G Q P +T +E++ + ++ E + +EE+ ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 1007 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV- 1065
LS Q++R+ +A LV +PS++ +DEP S LDAR VK
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1066 ETGRTVVCTIHQPS 1079
G T++ H P+
Sbjct: 189 RLGVTLLVVSHDPA 202
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 71.3 bits (174), Expect = 4e-14
Identities = 53/280 (18%), Positives = 95/280 (33%), Gaps = 64/280 (22%)
Query: 174 RKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 233
+K + L +V+ I G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 234 EFEPQ------RVAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAG 287
R + Q +T E +AF + + KR E
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-----IRKRVEEV- 124
Query: 288 IKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTT 347
K+L + + R +SG Q++RV
Sbjct: 125 ----------------------------AKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 348 GPALAL-----FMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402
AL +DE + LD+ +++ L T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 403 IILLSDGLIVYLG-PRELVLDFFESMGFKCPERKGVADFL 441
+ +L G +V +G P +L + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.5 bits (185), Expect = 1e-15
Identities = 56/268 (20%), Positives = 102/268 (38%), Gaps = 62/268 (23%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQR- 239
L ++S + G ++LGP +GKT L +AG SGR+ +G ++ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 240 VAAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMK 299
A++ Q+ + M V++ L F R + + KR +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT------------- 111
Query: 300 AAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALAL-----F 354
+ L ++ D +SGG+++RV AL
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 355 MDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYL 414
+DE + LD T + + +H N V+ + E + D I ++ DG ++ +
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 415 G-PRELVLDFFESMGFKCPERKGVADFL 441
G P E+ F+ P VA F+
Sbjct: 210 GKPEEI---------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 70.5 bits (172), Expect = 7e-14
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 15/188 (7%)
Query: 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISG-YLKKQETFTRI 953
L+ +S G ++G +GAGKT ++++AG +G I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 954 SGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGL 1013
+ QN P + V ++L + ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVV 1072
P LS +++R+ +A LV NP I+ +DEP S LD R + + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1073 CTIHQPSI 1080
H +
Sbjct: 183 HITHDQTE 190
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.5 bits (154), Expect = 2e-11
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 904 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSITISGY-LKKQETFTRISGYCEQN 960
L+G +GAGK+ ++++AG + G + ++G + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQD 78
Query: 961 DIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020
P ++VY ++ Y V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPS 1079
+R+R+ +A LV P ++ +DEP S +D + ++M ++ E ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 61.6 bits (149), Expect = 9e-11
Identities = 47/265 (17%), Positives = 87/265 (32%), Gaps = 61/265 (23%)
Query: 183 DVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVA- 241
+V +LLGP +GK+ L +AG + G V NG ++ P+R
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAA 301
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 302 ATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMD 356
+ + D +SGG+++RV AL L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 357 EISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLIVYLGP 416
E + +D T ++ +R + + E L D++ ++ +G IV G
Sbjct: 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGK 210
Query: 417 RELVLDFFESMGFKCPERKGVADFL 441
+ + + VA+FL
Sbjct: 211 LKELFS---------AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 17/178 (9%), Positives = 37/178 (20%), Gaps = 39/178 (21%)
Query: 909 ALMGVSGAGKTTLMDVLAG---RKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSP 965
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 966 LVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1083
+I +DE + + VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 5/105 (4%)
Query: 195 LLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ--RVAAYISQHDNHIG 252
++ G P GKTTL+ + +L + E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVF 297
+ V ++ + +R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 2/116 (1%)
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAA 242
G I GS+T + G +GKT + LA + G + E P+R+ A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFM 298
++ ++ A + + + A + D ++
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 132
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 41.1 bits (95), Expect = 5e-04
Identities = 16/146 (10%), Positives = 26/146 (17%), Gaps = 6/146 (4%)
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYI 244
G S+ L G +GKT L+ E ++
Sbjct: 20 GGGFFKDSIILATGATGTGKTLLVSRFVENA------CANKERAILFAYEESRAQLLRNA 73
Query: 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATE 304
EM + L D L + N+ + A
Sbjct: 74 YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVS 133
Query: 305 GQEANVLTDYYLKVLGLDICADTLVG 330
+
Sbjct: 134 NNAFRQFVIGVTGYAKQEEITGLFTN 159
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 3/137 (2%)
Query: 198 GPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTVR 257
+GKTTLL L L + R H + + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 258 ETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLK 317
+ A ++ + + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 318 VLGLDICADTLVGDEMI 334
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 9e-04
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 9/126 (7%)
Query: 975 YSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1034
+A L + E + + L + G V+ L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 1035 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEAIPGVQ 1094
+DE + LD + ++ + + +FE D + GV
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV-GVY 409
Query: 1095 KIKDGC 1100
+ +
Sbjct: 410 RQQQEN 415
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 9e-04
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 188 IRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHN----MDEFEPQRVAAY 243
+ G++ L+ P +GK+ L L LA ++ + E P +
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 85
Query: 244 ISQHDNHIGEMTVR 257
+ H+ +
Sbjct: 86 LHALGAHLSAEERQ 99
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 40.5 bits (93), Expect = 0.001
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYI 244
G + S+T G SGKT ++ L Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 245 S 245
Sbjct: 85 D 85
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.001
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 5/165 (3%)
Query: 185 SGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYI 244
G + GS+T L G +GK+ L LA L + G + E + V
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS 87
Query: 245 SQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATE 304
+ +A++ D L + + + V A
Sbjct: 88 IAQRFGLDPDDALNNVAYARAYN-----ADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 142
Query: 305 GQEANVLTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGP 349
+ + + + + L L G++ +V
Sbjct: 143 RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQV 187
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.002
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 909 ALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVT 968
+ G +GKT+L+ +L S + + + + L
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 969 VYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSL 1010
++ + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 38.5 bits (88), Expect = 0.004
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA--GKLDSSLKVSGRVTYNGHNMDEFEPQ 238
+ D + R G + ++ GK+T + A KV + +
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLI 84
Query: 239 RVAAYISQHDNHIGEMTVRE 258
+ + + + + E
Sbjct: 85 GLHNRVRLRQSDSLKREIIE 104
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.1 bits (87), Expect = 0.004
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 186 GIIRPGSMTLLLGPPSSGKTTLLLALA 212
G + G TL+ G +GKT +
Sbjct: 21 GGLPIGRSTLVSGTSGTGKTLFSIQFL 47
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.98 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.38 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.27 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.12 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.96 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.51 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.25 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.02 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.98 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.58 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.3 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.14 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.59 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.45 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.32 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.29 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.26 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.19 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.97 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.93 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.86 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.8 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.77 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.76 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.68 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.67 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.61 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.49 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.37 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.35 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.23 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.2 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.13 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.13 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.09 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.06 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.95 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.92 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.84 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.8 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.76 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.7 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.62 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.59 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.57 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.54 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.52 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.49 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.48 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.42 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.37 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.29 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.28 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.28 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.26 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.17 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.14 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.13 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.1 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.09 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.08 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.08 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.06 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.0 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.96 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.96 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.95 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.93 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.92 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.9 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.87 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.87 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.85 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.8 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.74 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.72 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.69 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.63 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.59 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.59 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.58 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.56 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.54 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.52 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.48 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.44 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.37 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.36 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.36 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.34 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.31 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.3 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.24 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.19 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.19 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.06 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.99 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.94 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.93 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.91 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.73 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.68 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.63 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.63 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.6 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.55 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.53 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.39 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.35 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.29 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.2 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.13 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.07 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.03 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.98 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.88 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.85 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.8 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.76 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.75 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.69 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.65 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.57 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.57 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.54 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.51 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.49 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.43 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.43 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.4 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.24 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.24 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.23 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.19 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.13 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.1 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.02 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.92 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.91 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.82 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.82 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.79 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.72 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.7 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.62 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.6 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.55 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.53 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.52 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.52 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.5 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.35 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.34 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.31 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.19 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.17 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.11 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.08 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.08 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.06 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.03 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.96 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.87 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.8 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.78 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.67 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.62 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.58 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.57 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.48 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 89.47 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.47 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.45 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.44 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.44 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.4 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.39 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.38 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.33 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.29 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.23 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.21 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.21 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.13 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.05 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.02 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.97 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.82 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.79 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.68 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.59 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.59 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.57 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.54 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.51 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.38 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 88.29 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.26 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.25 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.24 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.21 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.19 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.18 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.16 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.13 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.09 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.02 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.95 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.78 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.77 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.75 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.72 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.65 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.62 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.54 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.45 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.43 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.42 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.41 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.29 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.23 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.17 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.03 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.98 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.8 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.78 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.74 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.73 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.65 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 86.58 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.49 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.37 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.33 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.33 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.31 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.24 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.21 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.07 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.06 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.04 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.99 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.96 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.94 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.93 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.93 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.91 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.77 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.74 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.62 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.59 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.56 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.51 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.37 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.33 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.29 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.22 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.18 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.14 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.1 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.99 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.97 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.89 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.88 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.82 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.75 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.61 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.48 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.36 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.32 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.19 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.17 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.09 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.07 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.02 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.0 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.57 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.54 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.54 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.39 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.28 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.0 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 82.76 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.57 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.35 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.3 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.55 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.47 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.31 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.22 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 81.12 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.51 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.35 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-43 Score=387.44 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=149.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~ 247 (1436)
+++.++++++++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.+||+++....+ ++.+|||+|+
T Consensus 4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccc
Confidence 45666778889999999999999999999999999999999999999998 9999999999977655 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.+++.+||+||+.|++++++... .+.+..++++++.+||++..|.
T Consensus 81 ~~l~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~ 126 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDR 126 (232)
T ss_dssp CCC-------------------------------------------------------CHHHHHHHHHHHHC--------
T ss_pred cccccchhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhC
Confidence 999999999999999876654211 1233457889999999987765
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. ++.|||||||||+||+|++ |+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+.+++.++||+
T Consensus 127 ~-----~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 127 K-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp ------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSE
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCE
Confidence 4 5579999999999998875 999999999999999999999999877544 5555688999999999999
Q ss_pred EEEecCCeEEEecChHHHHH
Q 038815 403 IILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~~ 422 (1436)
|++|++|+++++|+++++.+
T Consensus 201 i~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 201 IVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-43 Score=386.82 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=177.6
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcC
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQ 246 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q 246 (1436)
++++.++++++++|+|||++|++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++....+ ++.+|||+|
T Consensus 9 v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q 85 (239)
T d1v43a3 9 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQ 85 (239)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEee
Confidence 456677778899999999999999999999999999999999999999998 9999999999877655 467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCccccc
Q 038815 247 HDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICAD 326 (1436)
Q Consensus 247 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~ 326 (1436)
++.++|.+||+||+.|+++.++.. + .+.+..++++++.+||++..|
T Consensus 86 ~~~l~~~ltv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~ 131 (239)
T d1v43a3 86 SYAVWPHMTVYENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLN 131 (239)
T ss_dssp ------CCCHHHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT
T ss_pred chhhcccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhc
Confidence 999999999999999987665431 1 123445788999999987665
Q ss_pred ccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 038815 327 TLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFD 401 (1436)
Q Consensus 327 t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD 401 (1436)
+++..|||||||||+||+|++ |+|||||+|||+.++.++.+.++++.+..+ ++++.++|+.+++.++||
T Consensus 132 -----~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~d 205 (239)
T d1v43a3 132 -----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGD 205 (239)
T ss_dssp -----SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCS
T ss_pred -----CChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCC
Confidence 556789999999999998874 999999999999999999999999876555 455558999999999999
Q ss_pred eEEEecCCeEEEecChHHHH
Q 038815 402 DIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 402 ~vilL~~G~iv~~G~~~~~~ 421 (1436)
+|++|++|+++++|+++++.
T Consensus 206 ri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 206 RIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999984
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.2e-42 Score=381.89 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=183.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------c-cce
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------P-QRV 240 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~-~~~ 240 (1436)
++++.++++++++|+|||+.|++||+++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... + ++.
T Consensus 6 v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhccccccc
Confidence 355667777888999999999999999999999999999999999999998 999999998874432 1 467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcC
Q 038815 241 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLG 320 (1436)
Q Consensus 241 ~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 320 (1436)
++||+|++.++|.+||+||+.|+.+.++... .+.+.+++++++.+|
T Consensus 83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~ 128 (240)
T d1g2912 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLG 128 (240)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHT
T ss_pred ceecccchhhcchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 9999999999999999999999887764321 123445788999999
Q ss_pred CcccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 038815 321 LDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPE 395 (1436)
Q Consensus 321 L~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 395 (1436)
|++..|. +++.|||||||||+||||++ |+|||||+|||+.++.++.+.++++.+.. +++||.++|+.++
T Consensus 129 l~~~~~~-----~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~ 202 (240)
T d1g2912 129 LTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVE 202 (240)
T ss_dssp CGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHH
T ss_pred ChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHH
Confidence 9887664 55679999999999998875 99999999999999999999999987654 4555668999999
Q ss_pred HHhhcCeEEEecCCeEEEecChHHHH
Q 038815 396 TYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 396 ~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+.++||+|++|++|++++.|+++++.
T Consensus 203 ~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 203 AMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999885
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.3e-42 Score=376.68 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=178.9
Q ss_pred cccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc-ceEEEEcCC
Q 038815 169 QILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-RVAAYISQH 247 (1436)
Q Consensus 169 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~ 247 (1436)
+++.+++++ .+|+||||+|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.+..++ +.+|||+|+
T Consensus 5 ~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~ 80 (229)
T d3d31a2 5 ESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQN 80 (229)
T ss_dssp EEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccc
Confidence 445566655 4899999999999999999999999999999999999998 99999999999876553 679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccc
Q 038815 248 DNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADT 327 (1436)
Q Consensus 248 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t 327 (1436)
+.++|.+||+||+.|+.+.++... ...++++++.+||.+..|.
T Consensus 81 ~~l~~~~tV~enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~ 123 (229)
T d3d31a2 81 YSLFPHMNVKKNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDR 123 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTS
T ss_pred cccCccccHHHHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhC
Confidence 999999999999999887654311 1135667899999887764
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
. +..|||||||||+||||++ |||||||+|||+.++.++.+.++++.+.. +++|+.++|+.+++.++||+
T Consensus 124 ~-----~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~dr 197 (229)
T d3d31a2 124 N-----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADR 197 (229)
T ss_dssp C-----GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSE
T ss_pred C-----hhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhCCE
Confidence 4 5579999999999998875 99999999999999999999999987654 45566689999999999999
Q ss_pred EEEecCCeEEEecChHHHH
Q 038815 403 IILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 403 vilL~~G~iv~~G~~~~~~ 421 (1436)
|++|++|+++++|+++++.
T Consensus 198 v~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 198 IAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp EEEESSSCEEEEECHHHHH
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999999984
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-42 Score=380.86 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=178.9
Q ss_pred cccccc--ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC------ccceE
Q 038815 170 ILPTRK--KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE------PQRVA 241 (1436)
Q Consensus 170 ~~~~~~--~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~ 241 (1436)
++.+.+ ++..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.+
T Consensus 8 nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~i 84 (242)
T d1oxxk2 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKI 84 (242)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCE
T ss_pred eEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccc
Confidence 444443 4578999999999999999999999999999999999999998 999999999875422 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCC
Q 038815 242 AYISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGL 321 (1436)
Q Consensus 242 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 321 (1436)
|||+|++.++|.+||+||+.|+++.++... .+.+..++++++.+||
T Consensus 85 g~vfQ~~~L~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL 130 (242)
T d1oxxk2 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDI 130 (242)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTC
T ss_pred eEEeccccccccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcCh
Confidence 999999999999999999999876554211 1234457889999999
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++.+|. ++..|||||||||+||||++ ||+||||+|||+.++.++.+.++++.+..+ ++++.++|+..++
T Consensus 131 ~~~~~~-----~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g-~tvi~vTHd~~~~ 204 (242)
T d1oxxk2 131 HHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADI 204 (242)
T ss_dssp GGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHH
T ss_pred HhhhhC-----ChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccC-CEEEEEECCHHHH
Confidence 876664 55679999999999998885 999999999999999999999999876554 5556689999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++||+|++|++|++++.|+++++.
T Consensus 205 ~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 205 FAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999984
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-41 Score=373.26 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=176.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc------cceEEEEcCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP------QRVAAYISQHDN 249 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 249 (1436)
...++|+|||++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 3457999999999999999999999999999999999999998 9999999999876553 256999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
+++.+||+||+.|+++.++... ++.+..++++|+.+||++.+|
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~--- 135 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHD--- 135 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTS---
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhh---
Confidence 9999999999999887664321 123345778999999987665
Q ss_pred cCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.+++.|||||||||+||+|++ ||+||||+|||+.++.++++.|+++.+..+ ++++.++|+..++..+||+|+
T Consensus 136 --~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp --SCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEE
T ss_pred --CChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccC-CEEEEEcCCHHHHHHhCCEEE
Confidence 456689999999999998875 999999999999999999999999877544 555558999999999999999
Q ss_pred EecCCeEEEecChHHH
Q 038815 405 LLSDGLIVYLGPRELV 420 (1436)
Q Consensus 405 lL~~G~iv~~G~~~~~ 420 (1436)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.2e-41 Score=368.18 Aligned_cols=199 Identities=22% Similarity=0.322 Sum_probs=170.1
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++.++ ++..+|+|||+.|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 47788887665 35789999999999999999999999999999999999876 4589999999986
Q ss_pred cc-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 946 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 946 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
.. ...+|.+|||+|++.++|.+||+||+.|.+.++ ..+.++.+++++++++.++|.+..|.. +..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 53 334577999999999999999999999987665 356778888999999999999988887 467999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dr 206 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 206 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999765 999999999974 57777888
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.5e-41 Score=364.99 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=175.1
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++++.... ....+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 57888987775321 23468999999999999999999999999999999999876 45899999998764
Q ss_pred cc---c---c-cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 038815 947 QE---T---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVSG 1018 (1436)
Q Consensus 947 ~~---~---~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~ 1018 (1436)
.. . + ++.+|||+|++.++|.+||+||+.+...++.....+.+++.+++.++++.++|.+ ..+.. +..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 31 1 2 3569999999999999999999999988776556677888888999999999975 56655 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|+||+|||||||||+.++..|++.|+++.++ |.|||+++|++. +-+..|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~dr 214 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGER 214 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999974 3477887
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-40 Score=365.23 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=175.7
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++.++ ++..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 46788887765 34679999999999999999999999999999999999876 4589999999865
Q ss_pred ccc-------cccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038815 946 KQE-------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSG 1018 (1436)
Q Consensus 946 ~~~-------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1018 (1436)
... ..+|.+|||+|++.++|.+||+||+.|...++ ..+.++++++++++++.++|.+..|.. ++.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhh
Confidence 321 12567999999999999999999999998776 356778888999999999999988876 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1019 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1019 lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |.|||+++|+.. ++.+..|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~dr 209 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999974 56677788
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.9e-41 Score=367.90 Aligned_cols=201 Identities=28% Similarity=0.394 Sum_probs=176.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|++++++. ++..+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 4778899887641 34679999999999999999999999999999999999876 4589999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038815 946 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGL 1019 (1436)
Q Consensus 946 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~l 1019 (1436)
.. ...+|.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.+||++..|..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 223567999999999999999999999986543 4567788889999999999999888874 679
Q ss_pred CHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1020 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1020 SgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||||||||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dr 210 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999654 999999999974 57788888
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-41 Score=368.01 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=138.0
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++++ +++.+|+|||+.|++||++||+|||||||||||++|+|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 4567887665 34789999999999999999999999999999999999876 45899999998765
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|++.+++.+||+||+.|...++. .+.++.+++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 4 2346789999999999999999999999876553 345667788999999999999988874 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|++|+|||||+|||+.++..|++.|+++.+ .|.|||+++|++. ++.+.-|+
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dr 200 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 200 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999865 5999999999973 56677788
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.8e-40 Score=359.38 Aligned_cols=201 Identities=24% Similarity=0.302 Sum_probs=167.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc-------ceEEEEcCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ-------RVAAYISQHD 248 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d 248 (1436)
+...+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3456899999999999999999999999999999999999998 99999999998776543 3599999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc-cccc
Q 038815 249 NHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI-CADT 327 (1436)
Q Consensus 249 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 327 (1436)
.++|.+||+||+.++...+..+.. + ..+....+.++|+.+||++ .++
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~l~~~~L~~~~~~- 140 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM-------S------------------------GEERRKRALECLKMAELEERFAN- 140 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC-------C------------------------HHHHHHHHHHHHHHTTCCGGGTT-
T ss_pred hhCcCccHHHHHhHHHHHhccCCC-------C------------------------HHHHHHHHHHHHHhhchhhhhhc-
Confidence 999999999999998876533211 0 1112334667899999975 344
Q ss_pred cccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 038815 328 LVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDD 402 (1436)
Q Consensus 328 ~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~ 402 (1436)
.++..|||||||||+||||++ |+|||||+|||+.++.++++.|+++.+.. ++++|.++|+.+++ ++||+
T Consensus 141 ----~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 141 ----HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp ----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEEECSCHHHH-TTSSE
T ss_pred ----CChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhh-CCEEEEECCCHHHH-HhCCE
Confidence 456689999999999998875 99999999999999999999999987654 45555577887665 89999
Q ss_pred EEEecCCeEEEecCh
Q 038815 403 IILLSDGLIVYLGPR 417 (1436)
Q Consensus 403 vilL~~G~iv~~G~~ 417 (1436)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.3e-40 Score=358.78 Aligned_cols=213 Identities=23% Similarity=0.367 Sum_probs=177.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc-cceEEEEcCCCCCC
Q 038815 173 TRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP-QRVAAYISQHDNHI 251 (1436)
Q Consensus 173 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 251 (1436)
++.++..+ |||++++ ||+++|+|||||||||||++|+|.++|+ +|+|.+||.++....+ ++.+|||+|++.++
T Consensus 9 k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~ 82 (240)
T d2onka1 9 KRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhc
Confidence 34444444 8999995 6899999999999999999999999998 9999999999987655 46799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccC
Q 038815 252 GEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGD 331 (1436)
Q Consensus 252 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~ 331 (1436)
|.+||+||+.|+++.. .+ .+.+.+++++++.+||++..|
T Consensus 83 ~~ltV~enl~~~l~~~------------~~------------------------~~~~~~v~~~l~~~gl~~~~~----- 121 (240)
T d2onka1 83 PHLSVYRNIAYGLRNV------------ER------------------------VERDRRVREMAEKLGIAHLLD----- 121 (240)
T ss_dssp TTSCHHHHHHTTCTTS------------CH------------------------HHHHHHHHHHHHTTTCTTTTT-----
T ss_pred ccchhhHhhhhhhccc------------CH------------------------HHHHHHHHHHHHhcCcHhhhh-----
Confidence 9999999999975311 01 112345778999999988666
Q ss_pred cccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 038815 332 EMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILL 406 (1436)
Q Consensus 332 ~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL 406 (1436)
+.++.|||||||||+||||++ |+|||||+|||+.++.++.+.++++.+..+. +++.++|+.+++.++||+|++|
T Consensus 122 ~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~-tvi~vtHd~~~~~~~adri~vm 200 (240)
T d2onka1 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAAMLADEVAVM 200 (240)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC-CEEEEESCHHHHHHHCSEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHhCCEEEEE
Confidence 455689999999999998774 9999999999999999999999998775554 4555889999999999999999
Q ss_pred cCCeEEEecChHHHHHHHHhcCCCCCCCCCHHHHHH
Q 038815 407 SDGLIVYLGPRELVLDFFESMGFKCPERKGVADFLQ 442 (1436)
Q Consensus 407 ~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~adfl~ 442 (1436)
++|++++.|+++++.+ |+...++.|+.
T Consensus 201 ~~G~ii~~G~~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 201 LNGRIVEKGKLKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp ETTEEEEEECHHHHHH---------SCCSSHHHHGG
T ss_pred ECCEEEEEecHHHHhc---------CCCHHHHHHhC
Confidence 9999999999999853 34455677664
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-40 Score=362.18 Aligned_cols=202 Identities=24% Similarity=0.290 Sum_probs=174.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|++.++... ....++|+|||+.|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 5788888766532 123468999999999999999999999999999999999876 45899999998753
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038815 947 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 947 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lS 1020 (1436)
. ..+++.+|||+|+..+++.+||+||+.|...++. .+.++.+++++++++.+||.+..|.. +..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 2 1245679999999999999999999999876652 45567778899999999999988876 46799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..|++.|+++.++ |.|||+++|+.. ++....|+
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dr 210 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 210 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999775 999999999964 45666788
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.9e-40 Score=358.18 Aligned_cols=194 Identities=21% Similarity=0.264 Sum_probs=169.5
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|+++++. + .+|+||||.|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 56778877652 2 37999999999999999999999999999999999876 45899999998875
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 947 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 947 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ...+|.+|||+|++.++|.+||+||+.|...++... . .++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 4 234578999999999999999999999998776422 1 246889999999999988774 579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHHhhh
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ .|.|||+++|++. ++.+..|+
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~dr 197 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999976 4999999999975 67777888
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-39 Score=357.91 Aligned_cols=212 Identities=26% Similarity=0.290 Sum_probs=182.4
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCC--ccceEEEEc
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFE--PQRVAAYIS 245 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~ 245 (1436)
++++.++++++++|+|||+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.+.. .++.++|||
T Consensus 5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEee
Confidence 456677888899999999999999999999999999999999999999998 999999999876532 246799999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+++++||.||+.|...+++.. ..+....++.+++.+||.+..
T Consensus 82 q~~~~~~~ltv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~ 127 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAGFYASS----------------------------------SSEIEEMVERATEIAGLGEKI 127 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCC----------------------------------HHHHHHHHHHHHHHHCCGGGG
T ss_pred eccccCCCccHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999987665321 011234467789999998877
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+..+ +.|||||||||+||+++ +|||||||+|||+.++.++.+.++++++. + ++|+.++|+.+++..+|
T Consensus 128 ~~~~-----~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g-~tii~~tH~l~~~~~~~ 200 (238)
T d1vpla_ 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-G-LTILVSSHNMLEVEFLC 200 (238)
T ss_dssp GSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEEECCHHHHTTTC
T ss_pred hhhh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHhC
Confidence 7655 46999999999998876 59999999999999999999999998753 4 55556889999999999
Q ss_pred CeEEEecCCeEEEecChHHHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVLDF 423 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~~ 423 (1436)
|+|++|++|++++.|+++++.+.
T Consensus 201 drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 201 DRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp SEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-39 Score=363.67 Aligned_cols=211 Identities=27% Similarity=0.320 Sum_probs=177.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc----------
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---------- 237 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------- 237 (1436)
++++.++++..++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....+
T Consensus 5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccH
Confidence 345666777888999999999999999999999999999999999999998 9999999999854321
Q ss_pred ------cceEEEEcCCCCCCCCCCHHHHHHhhhh-hccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHH
Q 038815 238 ------QRVAAYISQHDNHIGEMTVRETLAFSAR-CQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANV 310 (1436)
Q Consensus 238 ------~~~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1436)
++.+|||+|++.+++.+||.||+.++.. ..+. .+ .+...
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~------------------------~~~~~ 127 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SK------------------------HDARE 127 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CH------------------------HHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCC----------CH------------------------HHHHH
Confidence 2569999999999999999999998642 2211 00 11234
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 038815 311 LTDYYLKVLGLDICADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTA 385 (1436)
Q Consensus 311 ~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ 385 (1436)
.+.++++.+||.+..+ ++++..|||||||||+||++++ |+|||||+|||+.++.+|.+.|+++.+ .+ ++
T Consensus 128 ~~~~~l~~~~l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~t 201 (258)
T d1b0ua_ 128 RALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KT 201 (258)
T ss_dssp HHHHHHHHTTCCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CC
T ss_pred HHHHHHHHcCCchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cC-Cc
Confidence 4677899999976322 3456689999999999998774 999999999999999999999999875 34 55
Q ss_pred EEEEecChhhHHhhcCeEEEecCCeEEEecChHHHH
Q 038815 386 VISLLQPAPETYDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 386 ii~~~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
|+.++|+.+++..+||||++|++|+|++.|+++++.
T Consensus 202 il~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 202 MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 666899999999999999999999999999999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-39 Score=360.18 Aligned_cols=210 Identities=24% Similarity=0.308 Sum_probs=174.6
Q ss_pred cccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEE
Q 038815 167 SLQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAA 242 (1436)
Q Consensus 167 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~ 242 (1436)
.++++.++++++++|+||||.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.....+ ..++
T Consensus 8 ev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~ 84 (240)
T d1ji0a_ 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhccc
Confidence 4566777888889999999999999999999999999999999999999998 99999999998765442 3489
Q ss_pred EEcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHc-CC
Q 038815 243 YISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVL-GL 321 (1436)
Q Consensus 243 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL 321 (1436)
|++|+..+|+.+||+||+.+++....... ..+...+.+++.+ +|
T Consensus 85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l 129 (240)
T d1ji0a_ 85 LVPEGRRIFPELTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRL 129 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHH
T ss_pred ccCcccccCCcccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhCh
Confidence 99999999999999999988764321100 0111233445555 56
Q ss_pred cccccccccCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 038815 322 DICADTLVGDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPET 396 (1436)
Q Consensus 322 ~~~~~t~vg~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 396 (1436)
++..+..+ ..|||||||||+||+|+ +|+|||||+|||+.++.++.+.++++++. +++|+.++|+.+++
T Consensus 130 ~~~~~~~~-----~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 130 KERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGA 202 (240)
T ss_dssp HTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHH
T ss_pred HHHHhCch-----hhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHH
Confidence 66666544 46999999999998877 49999999999999999999999998653 45556689999999
Q ss_pred HhhcCeEEEecCCeEEEecChHHHH
Q 038815 397 YDLFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 397 ~~lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
.++||+|++|++|++++.|+++++.
T Consensus 203 ~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.3e-39 Score=362.35 Aligned_cols=223 Identities=26% Similarity=0.340 Sum_probs=182.0
Q ss_pred ccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc----ceEEE
Q 038815 168 LQILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ----RVAAY 243 (1436)
Q Consensus 168 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~y 243 (1436)
++++.++++.+++|+|||++|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++....++ +.++|
T Consensus 7 v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 7 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCc
Confidence 456667778889999999999999999999999999999999999999998 99999999999776653 34899
Q ss_pred EcCCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcc
Q 038815 244 ISQHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDI 323 (1436)
Q Consensus 244 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 323 (1436)
++|++.+++.+||.||+.++...++.... .....+ ...+ ...+....++.+++.+|+++
T Consensus 84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~----~~~~~~----~~~~-------------~~~~~~~~~~~~l~~~~l~~ 142 (254)
T d1g6ha_ 84 TFQTPQPLKEMTVLENLLIGEICPGESPL----NSLFYK----KWIP-------------KEEEMVEKAFKILEFLKLSH 142 (254)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHH----HHHHHC----SSCC-------------CCHHHHHHHHHHHHHTTCGG
T ss_pred cCCccccCCCCeeeeeeeehhhhccccch----hhhhhh----cccc-------------cHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998654422110 000000 0000 01122334677899999998
Q ss_pred cccccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 038815 324 CADTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYD 398 (1436)
Q Consensus 324 ~~~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 398 (1436)
..|..++ .|||||||||+||++++ |+|||||+|||+.++.++.+.++++.. .+++|+.++|+.+++.+
T Consensus 143 ~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~ 215 (254)
T d1g6ha_ 143 LYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLN 215 (254)
T ss_dssp GTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGG
T ss_pred hccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHH
Confidence 8776655 59999999999988774 999999999999999999999999864 35666678999999999
Q ss_pred hcCeEEEecCCeEEEecChHHHH
Q 038815 399 LFDDIILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 399 lfD~vilL~~G~iv~~G~~~~~~ 421 (1436)
+||+|++|++|++++.|+++++.
T Consensus 216 ~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 216 YIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp GCSEEEEEETTEEEEEEESHHHH
T ss_pred hCCEEEEEeCCEEEEEecHHHHh
Confidence 99999999999999999988764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-38 Score=350.36 Aligned_cols=198 Identities=24% Similarity=0.308 Sum_probs=175.4
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
+..+|++.++ +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecc
Confidence 5677877654 45789999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038815 947 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQR 1024 (1436)
Q Consensus 947 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqr 1024 (1436)
. ...++.+|||||++.+++.+||.|++.|.+.++. .+.++..+.++++++.++|.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHHH
Confidence 3 3456789999999999999999999999887763 356667788999999999999888875 57999999
Q ss_pred HHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1025 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1025 kRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||+||++|+++|+||+|||||+|||+.++..|+++|++++++|+|||+|+|++. ++.+..|+
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~dr 202 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 202 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999989999999999974 56667787
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-37 Score=344.52 Aligned_cols=198 Identities=23% Similarity=0.312 Sum_probs=168.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++.+|++..+ ++..+|+||||.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccccc
Confidence 57788888765 35789999999999999999999999999999999999876 4589999999876
Q ss_pred ccc---cc-cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 038815 946 KQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVSGLS 1020 (1436)
Q Consensus 946 ~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lS 1020 (1436)
... .. +..++|++|+..+++.+||+||+.+.+..+.+ .+..++.++++++.+ +|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCch-----hhCC
Confidence 432 12 23489999999999999999999887654432 233445567777776 6888887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1021 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1021 gGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..|++.|++++++|.|||+++|+.. ++.+..|+
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~dr 208 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHY 208 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999988999999999974 67788898
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.8e-38 Score=342.09 Aligned_cols=178 Identities=23% Similarity=0.361 Sum_probs=159.0
Q ss_pred ceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeeccc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 038815 897 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLY 975 (1436)
Q Consensus 897 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 975 (1436)
|||+.+. ||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 78999999999999999999999876 458999999987654 3346789999999999999999999998
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHH
Q 038815 976 SAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055 (1436)
Q Consensus 976 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~ 1055 (1436)
+. + ..+..+++++++++++.+||.+..+.. ++.|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 345677788999999999999988887 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhh
Q 038815 1056 IVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1056 ~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+++.|+++.++ |.|||+++|++. ++.+..|+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adr 196 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADE 196 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCE
Confidence 999999999765 999999999974 67888898
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-37 Score=346.13 Aligned_cols=199 Identities=22% Similarity=0.248 Sum_probs=170.7
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++|++.++ ++.++|+||||.|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 6777887654 34679999999999999999999999999999999999876 45899999998653
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 038815 947 Q----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-RQS 1009 (1436)
Q Consensus 947 ~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~ 1009 (1436)
. ...++.+|||+|++.+++.+||+||+.+..... ...+.++.++++.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 2 124467999999999999999999999864322 234567778889999999999774 344
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1010 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1010 ~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. +..|||||||||+|||+|+.+|++|+|||||+|||+.++..|++.|++++++|.|||+++|++. ++....|+
T Consensus 146 ~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 146 Y-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred C-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCE
Confidence 3 3579999999999999999999999999999999999999999999999988999999999974 56778888
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-37 Score=341.72 Aligned_cols=205 Identities=23% Similarity=0.370 Sum_probs=161.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCC
Q 038815 176 KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIG 252 (1436)
Q Consensus 176 ~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 252 (1436)
....+|+|||+.|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+|
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf- 89 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL- 89 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-
T ss_pred CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-
Confidence 4567999999999999999999999999999999999999998 9999999999987654 46899999998766
Q ss_pred CCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCc
Q 038815 253 EMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDE 332 (1436)
Q Consensus 253 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~ 332 (1436)
..||+|||.++.... +.+...++....+ ... ..-.++...+|.+|..
T Consensus 90 ~~Ti~eNi~~~~~~~-------------------------~~~~~~~~~~~~~------~~~--~i~~~~~~~~t~i~~~ 136 (241)
T d2pmka1 90 NRSIIDNISLANPGM-------------------------SVEKVIYAAKLAG------AHD--FISELREGYNTIVGEQ 136 (241)
T ss_dssp TSBHHHHHCTTSTTC-------------------------CHHHHHHHHHHHT------CHH--HHTTSTTGGGSBCSTT
T ss_pred CccccccccccCccc-------------------------cHHHHHHHHHHHh------hHH--HHHhhhcchhhhcCCC
Confidence 569999998853110 0111111110000 011 1223566778888864
Q ss_pred ccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 038815 333 MIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 407 (1436)
Q Consensus 333 ~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~ 407 (1436)
...|||||||||+||||++ |+||||||+||+.+..+|++.|+++.+ +.|+ |.++|.... .+.||+|++|+
T Consensus 137 -g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tv-i~itH~l~~-~~~~D~i~vl~ 211 (241)
T d2pmka1 137 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTV-IIIAHRLST-VKNADRIIVME 211 (241)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEE-EEECSSGGG-GTTSSEEEEEE
T ss_pred -CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEE-EEEECCHHH-HHhCCEEEEEE
Confidence 5689999999999998874 999999999999999999999998753 4555 556777654 47899999999
Q ss_pred CCeEEEecChHHHHH
Q 038815 408 DGLIVYLGPRELVLD 422 (1436)
Q Consensus 408 ~G~iv~~G~~~~~~~ 422 (1436)
+|+|+++|+++++.+
T Consensus 212 ~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 212 KGKIVEQGKHKELLS 226 (241)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-37 Score=347.09 Aligned_cols=202 Identities=24% Similarity=0.246 Sum_probs=171.8
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
-++.+|++.++ +..++|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 36777887554 35789999999999999999999999999999999999876 4589999999876
Q ss_pred ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcC----------CCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 038815 946 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRL----------PPEVDSETRKMFIEEIMELVELNPLRQSLV 1011 (1436)
Q Consensus 946 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1011 (1436)
... . .++.++|++|+..+++.+||+||+.++...+. ......++..++++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 432 1 23459999999999999999999998754321 112234455677889999999999988875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1012 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1012 g~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..|++.|++++++|.|||+++|+.. ++.+..|+
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Dr 219 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 219 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred -----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCE
Confidence 569999999999999999999999999999999999999999999999888999999999976 56777788
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.3e-38 Score=347.98 Aligned_cols=207 Identities=24% Similarity=0.401 Sum_probs=163.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
++.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|++.+|+
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG- 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-
Confidence 456999999999999999999999999999999999999998 9999999999877654 368999999998775
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+||+.++..... ..+...++.. ....... .-+|++..+|.++. .
T Consensus 102 ~tv~eni~~g~~~~~------------------------~~~~~~~~~~------~~~~~~~--i~~l~~g~~~~i~~-~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP------------------------TMEEITAAAV------KSGAHSF--ISGLPQGYDTEVDE-A 148 (251)
T ss_dssp SBHHHHHHCSCSSCC------------------------CHHHHHHHHH------HHTCHHH--HHTSTTGGGCBCCS-S
T ss_pred cchhhhhhhhhcccc------------------------hHHHHHHHHH------HHHHHHH--HHhccccchhhHhc-c
Confidence 699999998642110 0000000000 0001111 23566777888874 5
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+..|||||||||+||||++ ++||||||+||+.+..++.+.|+++.+..+.| ++.++|+... .+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~T-vi~itH~l~~-~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS-VLLITQHLSL-VEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCE-EEEECSCHHH-HHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCE-EEEEeCCHHH-HHhCCEEEEEEC
Confidence 6689999999999998874 99999999999999999999999876544445 4557777754 577999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+|+++|+++++.+
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.4e-38 Score=348.06 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=163.6
Q ss_pred cccccc-ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEc
Q 038815 170 ILPTRK-KHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYIS 245 (1436)
Q Consensus 170 ~~~~~~-~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~ 245 (1436)
++..++ ..+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+
T Consensus 6 nvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~ 82 (242)
T d1mv5a_ 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVS 82 (242)
T ss_dssp EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEc
Confidence 344443 3357999999999999999999999999999999999999998 9999999999876544 46799999
Q ss_pred CCCCCCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccc
Q 038815 246 QHDNHIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICA 325 (1436)
Q Consensus 246 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 325 (1436)
|++.+|+. ||+||+.++...... . .+.....+. ....-....+++..
T Consensus 83 Q~~~lf~~-ti~eNi~~~~~~~~~--~----~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 129 (242)
T d1mv5a_ 83 QDSAIMAG-TIRENLTYGLEGDYT--D----EDLWQVLDL--------------------------AFARSFVENMPDQL 129 (242)
T ss_dssp CSSCCCCE-EHHHHTTSCTTSCSC--H----HHHHHHHHH--------------------------HTCTTTTTSSTTGG
T ss_pred cccccCCc-chhhheecccccccc--h----hhHHHHHHH--------------------------HHhhhhhccCcccc
Confidence 99987775 999999875421100 0 000000000 00000112355677
Q ss_pred cccccCcccCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 038815 326 DTLVGDEMIRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLF 400 (1436)
Q Consensus 326 ~t~vg~~~~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lf 400 (1436)
+|.+|+. ...|||||||||+||||++ |+|||||++||+.++.++++.|+++.+ +.|+ |.++|....+ ..|
T Consensus 130 ~~~i~~~-g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tv-i~itH~l~~~-~~~ 204 (242)
T d1mv5a_ 130 NTEVGER-GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTT-LVIAHRLSTI-VDA 204 (242)
T ss_dssp GCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEE-EEECCSHHHH-HHC
T ss_pred cccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEE-EEEECCHHHH-HhC
Confidence 8888864 5579999999999998874 999999999999999999999998753 5555 4467777655 569
Q ss_pred CeEEEecCCeEEEecChHHHHH
Q 038815 401 DDIILLSDGLIVYLGPRELVLD 422 (1436)
Q Consensus 401 D~vilL~~G~iv~~G~~~~~~~ 422 (1436)
|+|++|++|+|+++|+++++.+
T Consensus 205 D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 205 DKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp SEEEEEETTEECCCSCHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-36 Score=334.38 Aligned_cols=196 Identities=27% Similarity=0.411 Sum_probs=159.9
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++|+||+|.++. +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEe
Confidence 3789999998752 34679999999999999999999999999999999999876 4589999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVEL-------NPLRQSLVGLPG 1015 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~ 1015 (1436)
.. ..+++.+|||+|++.+++ .||+||+.+.. ...+.++ ++++++..++ ..-.++.+|..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred cccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCC-
Confidence 53 456788999999998775 69999997742 2223322 2333333333 33456677765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
...|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ |+|||+++|+++. .+.+|+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~ 206 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADR 206 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSE
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--HHhCCE
Confidence 368999999999999999999999999999999999999999999999865 8999999999853 366777
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.9e-36 Score=336.96 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=161.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
..++|+|||++|++||.++|+||||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++.+| .
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-S 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-S
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-C
Confidence 357999999999999999999999999999999999999998 9999999999877654 47899999998766 5
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.||+|||.|+.... ..+...++....+ .... ...|++..||.+|+.
T Consensus 106 ~Ti~eNi~~g~~~~-------------------------~~~~~~~al~~~~------l~~~--i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 106 DTVKENILLGRPTA-------------------------TDEEVVEAAKMAN------AHDF--IMNLPQGYDTEVGER- 151 (255)
T ss_dssp SBHHHHHGGGCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSTTGGGCBCCGG-
T ss_pred CCHHHHHhccCcCC-------------------------CHHHHHHHHHHhC------CHHH--HHhccccccchhcCC-
Confidence 69999999863110 0011111110000 0111 224677789999864
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
...|||||||||+||||++ ++||||||+||+.+...|.+.|+++.+ ++|+|+ ++|.... ...||+|++|++
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~~-~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLST-ITHADKIVVIEN 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGG-TTTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHH-HHhCCEEEEEEC
Confidence 5679999999999998875 999999999999999999999998642 555554 6676654 578999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+|++.|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.7e-37 Score=342.42 Aligned_cols=196 Identities=28% Similarity=0.408 Sum_probs=159.6
Q ss_pred eEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecc
Q 038815 867 LTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKK 946 (1436)
Q Consensus 867 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 946 (1436)
++++||+|+++ +.+.+|+|||+.|+|||++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 67899999874 23468999999999999999999999999999999999876 35799999999865
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCC
Q 038815 947 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELN-------PLRQSLVGLPGV 1016 (1436)
Q Consensus 947 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~ 1016 (1436)
. ..+++.+|||+|++.+++. ||+||+.+... ...+.+. +++.++..++. +..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchhh----HHHHHHHHHhhhhhccCcccccccccCCC-
Confidence 3 4567889999999988875 99999976421 1222222 34444544443 34456676543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1017 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++++ |+|||+++|+++ ....+|+.
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i 207 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS--TIVDADKI 207 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHH--HHHHCSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHH--HHHhCCEE
Confidence 57999999999999999999999999999999999999999999999864 999999999974 34668883
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.7e-36 Score=333.33 Aligned_cols=205 Identities=24% Similarity=0.383 Sum_probs=160.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCc---cceEEEEcCCCCCCCC
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEP---QRVAAYISQHDNHIGE 253 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 253 (1436)
+.++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN- 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-
Confidence 456999999999999999999999999999999999999998 9999999999887654 357999999986664
Q ss_pred CCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcc
Q 038815 254 MTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEM 333 (1436)
Q Consensus 254 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~ 333 (1436)
.|+++|+.++.... . +.+...++....+ ....++. |++..+|.+|+ .
T Consensus 103 ~ti~~n~~~~~~~~-----------~-------------~~~~i~~a~~~~~------l~~~i~~--l~~gl~t~~~~-~ 149 (253)
T d3b60a1 103 DTVANNIAYARTEE-----------Y-------------SREQIEEAARMAY------AMDFINK--MDNGLDTIIGE-N 149 (253)
T ss_dssp SBHHHHHHTTTTSC-----------C-------------CHHHHHHHHHTTT------CHHHHHH--STTGGGSBCCT-T
T ss_pred cchhhhhhhcCccc-----------C-------------CHHHHHHHHHHHh------HHHHHHh--ccccchhhhcC-C
Confidence 69999998852110 0 0011111110000 1112222 45567888886 4
Q ss_pred cCCCCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 038815 334 IRGISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 408 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~ 408 (1436)
+..|||||||||+||||++ |+||||||+||+.+...|++.|+++.+ ++|+ |.++|....+ +.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tv-i~itH~l~~~-~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTS-LVIAHRLSTI-EQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEE-EEECSCGGGT-TTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEE-EEEECCHHHH-HhCCEEEEEEC
Confidence 6789999999999999874 999999999999999999999998743 4554 4567777654 68999999999
Q ss_pred CeEEEecChHHHHH
Q 038815 409 GLIVYLGPRELVLD 422 (1436)
Q Consensus 409 G~iv~~G~~~~~~~ 422 (1436)
|+|+++|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-36 Score=335.11 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=161.4
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++|+||+|.++.. .++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 59999999987531 23569999999999999999999999999999999999876 4589999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccccccCCCCCC
Q 038815 946 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMF-----IEEIMELVELNPLRQSLVGLPGVS 1017 (1436)
Q Consensus 946 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~-----v~~~l~~l~L~~~~~~~vg~~~~~ 1017 (1436)
.. ..+++.++||+|++.+++ .||+||+.|+.. .........+. ..+.++ +|.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 54 346788999999998875 699999987532 12222221111 112222 4444556666653 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHHhhhh
Q 038815 1018 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1018 ~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
.|||||||||+|||||+++|+||+||||||+||+.+...|++.|+++.++ |+|||+++|+++ ..+.+|+.
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI 221 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHI 221 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEE
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEE
Confidence 89999999999999999999999999999999999999999999998754 899999999974 45778883
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.5e-36 Score=336.03 Aligned_cols=198 Identities=26% Similarity=0.373 Sum_probs=163.0
Q ss_pred CceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCe
Q 038815 864 PHSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGY 943 (1436)
Q Consensus 864 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 943 (1436)
...++|+||+|.++. ..+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCE
Confidence 346999999998752 23468999999999999999999999999999999999876 45899999998
Q ss_pred eccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCC
Q 038815 944 LKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNP-------LRQSLVGL 1013 (1436)
Q Consensus 944 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~ 1013 (1436)
+... ..+++.+|||+|++.+++ .||+||+.|+. + ..+.+ .+.++++..++.+ -.|+.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 7654 356788999999998875 69999998752 2 22232 3456667666643 34666665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1014 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1014 ~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
. ..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||+++|+++. ...+|+
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~D~ 221 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADK 221 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSE
T ss_pred C-CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--HHhCCE
Confidence 4 357999999999999999999999999999999999999999999999864 8999999999863 366777
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-35 Score=331.57 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=161.5
Q ss_pred ceeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCee
Q 038815 865 HSLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYL 944 (1436)
Q Consensus 865 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 944 (1436)
..++|+||+|.++. .+..+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 36999999998752 23469999999999999999999999999999999999876 358999999987
Q ss_pred ccc---ccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 038815 945 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 1014 (1436)
Q Consensus 945 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 1014 (1436)
... ..+++.++||+|++.++. .|+++|+.++. +...+.+ .++++++..++.+. .++.+|..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred cchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCHH----HHHHHHHHHhHHHHHHhccccchhhhcCC
Confidence 653 346778999999998775 69999998752 2223332 24455555554432 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1015 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1015 ~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
..+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ |+|||+++|+++. .+.+|+.
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~v 220 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEI 220 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEE
T ss_pred -CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HHhCCEE
Confidence 468999999999999999999999999999999999999999999999865 8999999999853 3668873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4e-34 Score=308.79 Aligned_cols=183 Identities=20% Similarity=0.276 Sum_probs=152.3
Q ss_pred eeEEeceeeeeecccchhhcccccCceEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeec
Q 038815 866 SLTFDEVVYSVDMPQEMKLQGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLK 945 (1436)
Q Consensus 866 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 945 (1436)
.++++|+++.++ +.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 467888887653 358999999999999999999999999999999999876 4689999999886
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038815 946 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRK 1025 (1436)
Q Consensus 946 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrk 1025 (1436)
. ..+..++|++|+..+...+|++|++.+.+.++... .+. +.+.+.++.+++.++.+. +..|||||||
T Consensus 66 ~--~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred h--HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHH
Confidence 4 35667999999999999999999999888776432 222 235677888888765433 3579999999
Q ss_pred HHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 038815 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1077 (1436)
Q Consensus 1026 Rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1077 (1436)
||+||++|+.+|++++|||||+|||+.++..+++.|+++.+++.++|+++|+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~ 184 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 9999999999999999999999999999999999999987764455555543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-34 Score=325.54 Aligned_cols=194 Identities=23% Similarity=0.323 Sum_probs=150.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCCCCH
Q 038815 177 HLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGEMTV 256 (1436)
Q Consensus 177 ~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 256 (1436)
..+||+|||+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+ ++|++|++.+++ .||
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~----------i~~v~Q~~~l~~-~tv 113 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQFSWIMP-GTI 113 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCSC----------EEEECSSCCCCS-EEH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECCE----------EEEEeccccccC-cee
Confidence 357999999999999999999999999999999999999998 999999984 899999987776 599
Q ss_pred HHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccCC
Q 038815 257 RETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIRG 336 (1436)
Q Consensus 257 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 336 (1436)
+||+.|+..... .+.. ...+. .+.......+.+..+|.+|+ ....
T Consensus 114 ~eni~~~~~~~~--------~~~~---------------~~~~~-----------~~~~~~i~~l~~~~~~~~~~-~~~~ 158 (281)
T d1r0wa_ 114 KENIIFGVSYDE--------YRYK---------------SVVKA-----------CQLQQDITKFAEQDNTVLGE-GGVT 158 (281)
T ss_dssp HHHHTTTSCCCH--------HHHH---------------HHHHH-----------TTCHHHHTTSTTGGGCEECT-TCTT
T ss_pred eccccccccccc--------hHHH---------------HHHHH-----------HHhHHHHHhchhhhhhhhhh-hccC
Confidence 999988642110 0000 00000 01112244566677888875 4557
Q ss_pred CCHHHHHHHhhhhhhh-----hheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 038815 337 ISGGQKRRVTTGPALA-----LFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGLI 411 (1436)
Q Consensus 337 LSGGqrkRvsia~a~v-----lllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~i 411 (1436)
|||||||||+||||++ |+|||||+|||+.+..++++.+.... ..++|+| .++|..+ ..+.||+|++|++|++
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi-~itH~~~-~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRI-LVTSKME-HLRKADKILILHQGSS 235 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEE-EECSCHH-HHHTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEE-EEechHH-HHHhCCEEEEEECCEE
Confidence 9999999999998874 99999999999999999988643322 2345554 4667664 5678999999999999
Q ss_pred EEecChHHHHH
Q 038815 412 VYLGPRELVLD 422 (1436)
Q Consensus 412 v~~G~~~~~~~ 422 (1436)
+++|+++++..
T Consensus 236 ~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 YFYGTFSELQS 246 (281)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHhc
Confidence 99999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-34 Score=313.95 Aligned_cols=193 Identities=26% Similarity=0.343 Sum_probs=161.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCcc---ceEEEEcCCCCCCCCCC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQ---RVAAYISQHDNHIGEMT 255 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 255 (1436)
+.|+|||+.|++||+++|+|||||||||||++|+|.. ++ +|+|.++|+++.....+ ...+|++|+.......|
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 4799999999999999999999999999999999975 44 89999999988665543 35789999887777789
Q ss_pred HHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccccCcccC
Q 038815 256 VRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLVGDEMIR 335 (1436)
Q Consensus 256 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~r 335 (1436)
+.+++.+...-+ .....++++++.++|++..+.. ++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~-----~~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRS-----TN 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSB-----GG
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcC-----hh
Confidence 999998642110 0112356678899998776654 44
Q ss_pred CCCHHHHHHHhhhhhh------------hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 038815 336 GISGGQKRRVTTGPAL------------ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDI 403 (1436)
Q Consensus 336 gLSGGqrkRvsia~a~------------vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~v 403 (1436)
.|||||||||+||+++ +|+|||||+|||+.++..+.+.+++++. . +++|+.++|+.+++.++||+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHCCEE
Confidence 6999999999998754 7999999999999999999999999865 3 455666789999999999999
Q ss_pred EEecCCeEEEecChHHHH
Q 038815 404 ILLSDGLIVYLGPRELVL 421 (1436)
Q Consensus 404 ilL~~G~iv~~G~~~~~~ 421 (1436)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=5e-33 Score=306.66 Aligned_cols=179 Identities=22% Similarity=0.334 Sum_probs=152.6
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccc---cccceEEEeccCCCCCCCCCHH
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQE---TFTRISGYCEQNDIHSPLVTVY 970 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~d~~~~~lTv~ 970 (1436)
+|+|||+.|++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... ..+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5999999999999999999999999999999999753 369999999876432 2345689999988776678999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCCcceec
Q 038815 971 ESLLYSAWLRLPPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1043 (1436)
Q Consensus 971 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~-------~p~il~lD 1043 (1436)
+++.+... . +.+.+.++++++.++|.+..+..+ +.|||||||||+||++|++ +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc----h----hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99876431 1 123456889999999998887764 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1044 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1044 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
|||+|||+.++..+++.|++++++|.|||+++|+++ ++.+..|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri 202 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRA 202 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEE
Confidence 999999999999999999999989999999999975 577788883
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.3e-33 Score=316.15 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=139.0
Q ss_pred eEEeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHH
Q 038815 892 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYE 971 (1436)
Q Consensus 892 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 971 (1436)
+++|+|||+.|++||++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccC-ceeec
Confidence 579999999999999999999999999999999999876 45899999983 799999998877 49999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecC
Q 038815 972 SLLYSAWLRLPPEVDSETRKMFIEEIMEL-------VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1044 (1436)
Q Consensus 972 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDE 1044 (1436)
|+.|+.. ..... .+++++. ..+.+..++.+|.. ..+|||||||||+|||||+.+|+||+|||
T Consensus 116 ni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ccccccc------ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 9987531 12221 2233333 34444556666654 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhhh
Q 038815 1045 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDEA 1089 (1436)
Q Consensus 1045 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~~ 1089 (1436)
||||||+.+...|++.+......|+|+|+++|++ +....+|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI 227 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKI 227 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEE
Confidence 9999999999999876444445689999999997 445788983
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=7.7e-32 Score=290.77 Aligned_cols=186 Identities=21% Similarity=0.249 Sum_probs=148.8
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCC
Q 038815 170 ILPTRKKHLTILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDN 249 (1436)
Q Consensus 170 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~ 249 (1436)
++...+ +++||+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.+||+++.+. +..++|++|+..
T Consensus 7 ~ls~~y-~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 7 DLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEII 80 (200)
T ss_dssp EEEEES-SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCC
T ss_pred EEEEEe-CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeeccc
Confidence 344444 347999999999999999999999999999999999999998 99999999988653 456899999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCCccchhhhhhHHhhhcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHHHcCCcccccccc
Q 038815 250 HIGEMTVRETLAFSARCQGVGSRFDMLTELDKRENEAGIKPDPDIDVFMKAAATEGQEANVLTDYYLKVLGLDICADTLV 329 (1436)
Q Consensus 250 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v 329 (1436)
+...+|++|++.+.....+.... + ..+...++.+++.+. +.
T Consensus 81 ~~~~~t~~~~l~~~~~~~~~~~~--------~----------------------------~~~~~~l~~~~~~~~-~~-- 121 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVASLYGVKVN--------K----------------------------NEIMDALESVEVLDL-KK-- 121 (200)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCC--------H----------------------------HHHHHHHHHTTCCCT-TS--
T ss_pred CCCCcCHHHHHHHHHHhcCCccC--------H----------------------------HHHHHHHHHcCCccc-cc--
Confidence 99999999999987765532110 0 112335666666442 22
Q ss_pred cCcccCCCCHHHHHHHhhhhhh-----hhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 330 GDEMIRGISGGQKRRVTTGPAL-----ALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 330 g~~~~rgLSGGqrkRvsia~a~-----vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
.+..|||||||||+||+++ +++|||||+|||+.++.++++.+++..+. ++++|++.||+. ++||.+.
T Consensus 122 ---~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~ 193 (200)
T d1sgwa_ 122 ---KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNE 193 (200)
T ss_dssp ---BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEE
T ss_pred ---ccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhh
Confidence 3446999999999998876 49999999999999999999999998764 467777666653 5799999
Q ss_pred EecC
Q 038815 405 LLSD 408 (1436)
Q Consensus 405 lL~~ 408 (1436)
+|++
T Consensus 194 ~l~~ 197 (200)
T d1sgwa_ 194 NLHK 197 (200)
T ss_dssp EGGG
T ss_pred heee
Confidence 9875
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.12 E-value=1.1e-11 Score=129.27 Aligned_cols=146 Identities=13% Similarity=0.024 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEcCeecccccccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSITISGYLKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLPPEVD 986 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 986 (1436)
.++|+||||||||||+++|+|.... ..|.+...+.+..... +..++..+...........+. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIFSSKF------FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEETT------CCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHH--HhhhhhhhhhhHHHHHHhhhh------hhhhhhhh
Confidence 4899999999999999999996542 3677877765432111 111221111000000000000 00000000
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHH
Q 038815 987 SETRKMFIEEIMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1066 (1436)
Q Consensus 987 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~ 1066 (1436)
+ .+. + .....+|+|+++|.++++++..+|++|++|||+...+ .....++.|.+..+
T Consensus 72 ---~----------~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 ---S----------YGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp ---T----------EEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred ---h----------hhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 0 000 0 0012378999999999999999999999999854433 33455556666544
Q ss_pred -cCCEEEEEecCCCHHHHHHhhh
Q 038815 1067 -TGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1067 -~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
.+.|||+++|+.+. ....|+
T Consensus 128 ~~~~~il~~~h~~~~--~~~~~~ 148 (178)
T d1ye8a1 128 DPNVNVVATIPIRDV--HPLVKE 148 (178)
T ss_dssp CTTSEEEEECCSSCC--SHHHHH
T ss_pred cCCCEEEEEEccHHH--HHhhce
Confidence 48899999998653 334444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.02 E-value=3.2e-12 Score=133.35 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCCHHHHHHHhhhh-----hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 038815 336 GISGGQKRRVTTGP-----ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGL 410 (1436)
Q Consensus 336 gLSGGqrkRvsia~-----a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vilL~~G~ 410 (1436)
.+|+|+++|.++++ +.++++|||.... .....+.+.+.+.....+ ++++.++|.. +...++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~-~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPN-VNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTT-SEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCC-CEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 47899999999964 4479999985443 334556666666554334 4444455543 5677899999999999
Q ss_pred EEEecC
Q 038815 411 IVYLGP 416 (1436)
Q Consensus 411 iv~~G~ 416 (1436)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 987653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=1.6e-07 Score=105.92 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1016 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1016 ~~~lSgGqrkRl~ia~~L~----~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
...+|+|||+.+.++..++ .+|+++++|||-++|++.....+.+.|++.++ +.=||+|||.|. +.+.+|+
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~ 290 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADL 290 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhccc
Confidence 3578999999988877653 35789999999999999999999999998865 567999999885 5567775
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=1.5e-06 Score=97.81 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=54.9
Q ss_pred cCCCCHHHHHHHhhhh---------hhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 334 IRGISGGQKRRVTTGP---------ALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia~---------a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
...+|+|||+...++. +.++++|||-++||+.....+.+.|++.++ .+-++ ++.|++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qvi-itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFI-VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEE-EECCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEE-EEECCHHHHHhcccEE
Confidence 4579999999987732 235889999999999999999999998643 33333 2345578889999996
Q ss_pred E--ecCC
Q 038815 405 L--LSDG 409 (1436)
Q Consensus 405 l--L~~G 409 (1436)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=1.8e-06 Score=101.39 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1017 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1017 ~~lSgGqrkRl~ia~~L----~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|||||+|. +.+.-|.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~ 404 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDA 404 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhccc
Confidence 45899999998887554 3466799999999999999999999999988655566999999974 5555554
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=9.6e-05 Score=86.04 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=53.9
Q ss_pred cCCCCHHHHHHHhhh---------hhhhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 038815 334 IRGISGGQKRRVTTG---------PALALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDII 404 (1436)
Q Consensus 334 ~rgLSGGqrkRvsia---------~a~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~lfD~vi 404 (1436)
...+|||||.++++| ++.+++||||+++||+.....+.+.|++.+. ..+-+|+++|. +++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~-~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeCC-HHHHHhcccEE
Confidence 466899999998874 2336899999999999999999999987642 34444545554 57889999987
Q ss_pred Ee
Q 038815 405 LL 406 (1436)
Q Consensus 405 lL 406 (1436)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.14 E-value=0.0015 Score=69.21 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCC
Q 038815 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VKNTVETGRTVVCTIHQP 1078 (1436)
Q Consensus 1023 qrkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~t~Hqp 1078 (1436)
|-+|+.-....+.+.+++++||+.+|=|+.....+... ++.+.+.+..++++||..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 33444444444456679999999999999776655544 455667789999999974
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00091 Score=71.42 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEecCCC
Q 038815 1024 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VKNTVET-GRTVVCTIHQPS 1079 (1436)
Q Consensus 1024 rkRl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~-l~~~~~~-g~tvi~t~Hqps 1079 (1436)
-+|+.=...-+.+.+++++||+.+|=|+.....+... ++.+... +..+++|+|...
T Consensus 108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 3333333333455679999999999999888777654 6667654 568899999653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.59 E-value=0.00054 Score=74.99 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=27.4
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|+++.+=++||+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 455545589999999999999999999887763
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.58 E-value=0.0023 Score=67.63 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=27.3
Q ss_pred hhhheeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 038815 351 LALFMDEISNGLDSSTTFQIVNSIRQNIHILNGTAVISLLQ 391 (1436)
Q Consensus 351 ~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~~~q 391 (1436)
.++++||+.+|=|+.....+...+-+.....+..++++.|+
T Consensus 116 sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~ 156 (224)
T d1ewqa2 116 SLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY 156 (224)
T ss_dssp EEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeec
Confidence 36789999999999887776655433333345666665444
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.00071 Score=71.31 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVT 226 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~ 226 (1436)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47899999999999999999999976543 67775
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0037 Score=66.49 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=24.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~La 212 (1436)
|=+|+++. +.++++.|-|||.|||||+||.++
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence 33455443 245799999999999999999985
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.29 E-value=0.00097 Score=67.06 Aligned_cols=27 Identities=44% Similarity=0.571 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00071 Score=67.66 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
+++|.|+||||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0011 Score=69.77 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 48899999999999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.03 E-value=0.0012 Score=67.49 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.00017 Score=74.27 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 181 LKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 181 L~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 46677777776 99999999999999999997543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.0015 Score=66.60 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.00023 Score=73.34 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.0
Q ss_pred eeceEeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 895 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 895 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
+++.++.+.+| +++|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45667778777 99999999999999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.00065 Score=68.68 Aligned_cols=27 Identities=44% Similarity=0.618 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358899999999999999999987653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0018 Score=64.52 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.00082 Score=71.03 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEE
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVT 226 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~ 226 (1436)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999976543 67775
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.002 Score=64.40 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.+.++.|+|||||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.0013 Score=66.01 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
++++|+|++|||||||++.|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999887764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.037 Score=59.50 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=33.6
Q ss_pred HhhCCCcceecCCCC-----CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCC
Q 038815 1033 LVANPSIIFMDEPTS-----GLDARAAAIVMRTVKNTVET-GRTVVCTIHQP 1078 (1436)
Q Consensus 1033 L~~~p~il~lDEPTs-----gLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp 1078 (1436)
-..+|+++++|--+. --|......+++.|+.+++. |+|||++.|..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence 356899999996542 12666777888888888764 88999887754
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.76 E-value=0.0023 Score=64.18 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.|++++|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.68 E-value=0.0023 Score=63.79 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.67 E-value=0.0024 Score=64.03 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999997764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.0025 Score=64.20 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.55 E-value=0.003 Score=61.84 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999988643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.49 E-value=0.0014 Score=69.30 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEE
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIT 939 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~ 939 (1436)
+|..++++|+||+|||||+|.|.|... ..+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477899999999999999999998532 2245554
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0036 Score=62.42 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.35 E-value=0.0037 Score=62.45 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+|-.++|.|||||||||+.+.|+-++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 566789999999999999999998763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0046 Score=63.76 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|=+++|+++.|.||||||||||+..++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999998887654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.21 E-value=0.0038 Score=64.17 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+||||||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.20 E-value=0.0038 Score=62.13 Aligned_cols=22 Identities=55% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0045 Score=64.46 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.|.++.|+||||+|||||++.|.-+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999998643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.0043 Score=63.68 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+||+|++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999964
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.13 E-value=0.0041 Score=62.11 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.09 E-value=0.086 Score=54.59 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=23.8
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
.|=+++|+++.|.|++|+|||||..-++
T Consensus 20 ~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 20 HGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999999975443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.07 E-value=0.005 Score=61.55 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|.++.|+|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0051 Score=64.08 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.034 Score=59.75 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=25.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 179 TILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 179 ~iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++.+ +.||+++.|.|++|+|||||+-.|+-.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46655 346999999999999999999877643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.95 E-value=0.0061 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|-.++|+||+||||||+.+.|+-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.94 E-value=0.0057 Score=61.03 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++|+|++|||||||++.|..+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.92 E-value=0.0051 Score=61.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|.||+|||||||.+.|+.+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.87 E-value=0.006 Score=61.35 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++++|.|++||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999987764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.033 Score=59.73 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.-+.+.||+|+|||+|.++||..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 34679999999999999999963
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.80 E-value=0.0065 Score=62.04 Aligned_cols=27 Identities=41% Similarity=0.617 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|-.+.|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.79 E-value=0.006 Score=64.55 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.76 E-value=0.0047 Score=63.47 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.+.++.|+|||||||||+-+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.70 E-value=0.0063 Score=62.36 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+++|+|||||||||+-+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.70 E-value=0.0073 Score=58.93 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag 927 (1436)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.62 E-value=0.0064 Score=61.45 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-++|+|+||+|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.007 Score=59.27 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+.|+|||||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999998763
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.59 E-value=0.0073 Score=61.02 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999964
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.57 E-value=0.0075 Score=64.86 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
..++|.||||||||||.++|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.009 Score=58.91 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.52 E-value=0.0084 Score=60.01 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.49 E-value=0.0055 Score=62.26 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|+|++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999885
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0057 Score=62.25 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987653
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.009 Score=61.29 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+++|+|||||||||+-+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.37 E-value=0.0084 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.006 Score=61.97 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+||+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998743
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.0099 Score=59.94 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
+-+++.++|+|||||||+.+.|+-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999998864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.28 E-value=0.0099 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.011 Score=59.23 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.26 E-value=0.019 Score=61.29 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.+.||+|+|||+|.++|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999743
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.01 Score=60.55 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.17 E-value=0.012 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
..++.|.|++||||||+-+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45889999999999999999998653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.012 Score=59.09 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.012 Score=58.02 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.0095 Score=59.56 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.10 E-value=0.01 Score=61.20 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|+||||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.09 E-value=0.0098 Score=58.14 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.08 E-value=0.011 Score=58.70 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|+||+||||||+-+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.08 E-value=0.0097 Score=60.67 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.06 E-value=0.011 Score=59.79 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.012 Score=61.95 Aligned_cols=29 Identities=38% Similarity=0.484 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999887654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.02 E-value=0.01 Score=62.73 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.00 E-value=0.012 Score=59.84 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||-|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.013 Score=58.79 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.011 Score=57.83 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.|.|..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.96 E-value=0.0074 Score=67.28 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKLDSS 218 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~~~ 218 (1436)
.++.|.-++|.||.||||||||++|.+..++.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 34556678999999999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.014 Score=58.92 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+||+|.+|+|||||+|.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.93 E-value=0.012 Score=59.43 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.0088 Score=60.39 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|++|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.014 Score=59.20 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
..+.|+||||+|||||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.91 E-value=0.015 Score=66.74 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=36.9
Q ss_pred HHHHHhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHHhhh
Q 038815 1029 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFESFDE 1088 (1436)
Q Consensus 1029 ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~if~~FD~ 1088 (1436)
+..+|=.+|+|+++.|.. |..++...+ +.+.+|.-|+.|.|-.+ .++.+++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 344555799999999998 666766554 34667999999999765 3444454
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.012 Score=59.93 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.89 E-value=0.012 Score=58.39 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|+|||||||+-+.||-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999876
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.88 E-value=0.015 Score=58.60 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.87 E-value=0.0094 Score=59.75 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.014 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.85 E-value=0.012 Score=59.66 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.013 Score=59.76 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.015 Score=58.95 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.+.|+||+|||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.72 E-value=0.036 Score=59.70 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
..-+.|.||+|+|||+|.++||+..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3347799999999999999999854
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.69 E-value=0.025 Score=59.34 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|=+++|+++.|.|+||+|||||..-++-..
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988887544
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.68 E-value=0.014 Score=60.17 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.63 E-value=0.01 Score=59.85 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+||+|.+|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.59 E-value=0.017 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.014 Score=58.90 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.019 Score=58.82 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.7
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 6789999999999999999999887775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.56 E-value=0.015 Score=58.76 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.55 E-value=0.014 Score=57.39 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.54 E-value=0.013 Score=58.75 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999884
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.52 E-value=0.015 Score=58.61 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.016 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.011 Score=60.09 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.|.++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.48 E-value=0.016 Score=59.30 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.44 E-value=0.017 Score=57.22 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.40 E-value=0.017 Score=59.12 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.37 E-value=0.018 Score=59.26 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++++|.||||||||-+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999997653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.017 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.36 E-value=0.017 Score=57.72 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|+|+|||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.017 Score=59.06 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.31 E-value=0.021 Score=60.42 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=23.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~La 212 (1436)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 348999999999999999999987554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.30 E-value=0.017 Score=56.37 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.011 Score=59.55 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.012 Score=59.04 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++++|||||+|.|.|.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.19 E-value=0.019 Score=57.14 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.|+|+|||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998763
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.19 E-value=0.018 Score=58.16 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++.||||||+++|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.06 E-value=0.021 Score=57.38 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677889999999999999998764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.00 E-value=0.023 Score=57.92 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag 927 (1436)
.+++|+||+||||||+-+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.99 E-value=0.021 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.94 E-value=0.02 Score=57.07 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.93 E-value=0.019 Score=59.15 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
-++|+|++|||||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.91 E-value=0.025 Score=59.58 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
|=+++|+++.|.||||||||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999887755
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.78 E-value=0.022 Score=61.27 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.73 E-value=0.025 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.|+|++||||||+-+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999754
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.71 E-value=0.029 Score=56.99 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999953
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.018 Score=64.09 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999986543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.026 Score=58.47 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|.|||||||||+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.0085 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|++|+|||||++.|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.027 Score=58.37 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.55 E-value=0.026 Score=56.85 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+||+|+.+||||||+|.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.53 E-value=0.027 Score=60.50 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.39 E-value=0.023 Score=60.29 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
..++|.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.38 E-value=0.03 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999853
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.031 Score=58.99 Aligned_cols=28 Identities=32% Similarity=0.301 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG 213 (1436)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999888774
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.30 E-value=0.028 Score=60.66 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=28.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
-|+++.+=+.||++++|.|+||+|||||+.-|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34444434789999999999999999998888743
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.031 Score=57.02 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++.|+||+||||||+-+.|+...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999743
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.29 E-value=0.033 Score=58.04 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=26.2
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 038815 180 ILKDV-SGIIRPGSMTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 180 iL~~v-s~~i~~Ge~~~llGp~GSGKSTLL~~La 212 (1436)
-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34443 3458999999999999999999986544
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.20 E-value=0.031 Score=58.04 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.++|-|||||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.13 E-value=0.029 Score=57.23 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+.++.|+||+||||||+-+.|+..
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999964
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.07 E-value=0.031 Score=56.71 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.03 E-value=0.032 Score=58.52 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.98 E-value=0.03 Score=59.03 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.032 Score=58.71 Aligned_cols=25 Identities=48% Similarity=0.716 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCC
Confidence 3689999999999999999988754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.036 Score=57.31 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|-|++|||||||-+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999987654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.85 E-value=0.041 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.80 E-value=0.037 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.|+|++||||||+-+.||-+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998643
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.76 E-value=0.041 Score=55.13 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.75 E-value=0.034 Score=54.91 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.012 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||+|.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.69 E-value=0.032 Score=61.62 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.-++++||||+|||.|.|+||..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4457899999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.65 E-value=0.04 Score=55.20 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999865
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.57 E-value=0.043 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.037 Score=56.94 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.54 E-value=0.034 Score=61.66 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.5
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
...++.|.-+.|.|+.||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 34456677789999999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.044 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++.|+||+||||||.-+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.49 E-value=0.041 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.43 E-value=0.047 Score=60.50 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.43 E-value=0.037 Score=55.18 Aligned_cols=22 Identities=55% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999775
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.40 E-value=0.048 Score=63.09 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHD 248 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 248 (1436)
=++++||+|||||-|.+.||+.++- =-+..++..+++ +|||.++-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fTe------aGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE------VGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceeee------cceeecch
Confidence 4689999999999999999998752 235555555443 79999863
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.31 E-value=0.043 Score=58.42 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.-+++.||||+|||+|.++||....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999998753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.24 E-value=0.034 Score=59.95 Aligned_cols=27 Identities=41% Similarity=0.657 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+..-++|.||||+|||+|.++|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 445588999999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.048 Score=58.34 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+..-+++.||||+|||+|.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345678999999999999999998764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.23 E-value=0.048 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999953
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.19 E-value=0.037 Score=58.94 Aligned_cols=23 Identities=52% Similarity=0.819 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++.||||+|||+|.++|++.+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.13 E-value=0.053 Score=56.10 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+.|-++.+.|.||||||||-+.|+-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998655
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.10 E-value=0.045 Score=57.43 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.02 E-value=0.047 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+..++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.048 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
.-.+||.||+|||||||++.|+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.049 Score=59.70 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEEcCccCCCCCccceEEEEcCCCCCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFEPQRVAAYISQHDNHIGE 253 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 253 (1436)
+++|-|++||||||+-+.|.-.+... .....+..+++|+.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999999998776421 011236788888877763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.95 E-value=0.046 Score=54.26 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.047 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.91 E-value=0.049 Score=55.22 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 038815 193 MTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~La 212 (1436)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999996
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.82 E-value=0.056 Score=54.32 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999964
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.82 E-value=0.054 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++||.||+||||||+-+.|+..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.80 E-value=0.048 Score=62.38 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|++|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.79 E-value=0.052 Score=62.03 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-+||+|.+|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999954
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.72 E-value=0.045 Score=58.42 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
.+.|.||+|+|||||.++|++...
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.70 E-value=0.057 Score=57.34 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
...++|.||||+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.70 E-value=0.061 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.|.++.|.|.||||||||-+.|+-+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.62 E-value=0.044 Score=55.69 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.057 Score=55.88 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.053 Score=53.45 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 038815 194 TLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG 213 (1436)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.53 E-value=0.065 Score=55.97 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=25.1
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|=+++|+++.|.||+|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999999887764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.05 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999998865
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.52 E-value=0.059 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.053 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.063 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||.-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.34 E-value=0.049 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.31 E-value=0.058 Score=56.37 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++-||||+||||+.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.19 E-value=0.053 Score=58.09 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
=++|.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999999753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.17 E-value=0.066 Score=53.21 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++++|++|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.067 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.073 Score=55.03 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 903 RPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 903 ~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.|.+++|-|+-||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998763
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.068 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.06 E-value=0.066 Score=54.17 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.03 E-value=0.068 Score=59.13 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
.-.++|.||+|||||||++.|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 44799999999999999999985
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.99 E-value=0.074 Score=54.83 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877776553
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.96 E-value=0.065 Score=53.12 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHC
Q 038815 908 TALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag 927 (1436)
++++|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.96 E-value=0.074 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999854
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.063 Score=53.41 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.074 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.87 E-value=0.15 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
++|+|++|+|||||++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998743
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.80 E-value=0.074 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.78 E-value=0.037 Score=61.58 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
-++|.||||+|||||.+.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4799999999999999999999875
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.056 Score=56.60 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999999875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.62 E-value=0.089 Score=54.20 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
.+.+++++||+|+||||.+-=||.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999877775
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.069 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.58 E-value=0.066 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.09 Score=56.34 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|=+++|.+|.|.||||||||||+-.++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 568899999999999999999988777654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.093 Score=51.87 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++|+|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.08 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.48 E-value=0.071 Score=55.81 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.47 E-value=0.086 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999964
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.47 E-value=0.16 Score=50.68 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=27.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.|+.....+ .|.=++|.|+||+|||||...|.-+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455555555 8899999999999999999888643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.45 E-value=0.097 Score=51.37 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+||.+++|-|+=|||||||.|.++.-+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 5899999999999999999999986653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.44 E-value=0.071 Score=55.66 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.7
Q ss_pred EeeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 899 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 899 s~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
.|-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999999887764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.068 Score=52.99 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.40 E-value=0.087 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+||+||||||+-+.|+-+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.07 Score=52.90 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999987653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.076 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.33 E-value=0.092 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++|+|...+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 69999999999999999998653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.071 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.089 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+++|.||+||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999753
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.21 E-value=0.08 Score=52.07 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998774
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.21 E-value=0.08 Score=55.03 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++-||||+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.13 E-value=0.08 Score=53.17 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.05 E-value=0.082 Score=54.94 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++-||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.082 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.081 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.01 E-value=0.058 Score=54.11 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++++|++|+|||||++.|.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.97 E-value=0.063 Score=57.35 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
++.|.||||+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.82 E-value=0.2 Score=50.08 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=27.0
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++.....+ .|.=+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455544455 7888999999999999999888754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.79 E-value=0.18 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+++++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999998888753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.089 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998866
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.73 E-value=0.12 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
..+++++||+|+||||.+-=||-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999988887653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.73 E-value=0.087 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.11 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988863
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.68 E-value=0.11 Score=54.42 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.6
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
|=+++|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 568999999999999999999976544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.086 Score=51.74 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.59 E-value=0.068 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999997654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.57 E-value=0.093 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988743
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.086 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.12 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.091 Score=51.75 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.42 E-value=0.13 Score=53.91 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.1
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|=+.+|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999999999877764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.38 E-value=0.088 Score=53.45 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.12 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999999854
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.11 Score=56.99 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||.|++||||||+-+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 889999999999999888875
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.26 E-value=0.19 Score=50.21 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=26.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.|+. +...-.|.=++|.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3443 344557889999999999999999887754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.25 E-value=0.13 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 902 FRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 902 i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
.+||.+++|-|+=|||||||.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 46999999999999999999999985
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.24 E-value=0.087 Score=55.51 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.21 E-value=0.16 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.19 E-value=0.071 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.19 E-value=0.12 Score=54.86 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4567899999999999999988754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.18 E-value=0.12 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.|.+++|-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999863
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.16 E-value=0.11 Score=53.33 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 038815 193 MTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~La 212 (1436)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=0.12 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|.||+|+||||+.++||...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.09 E-value=0.059 Score=58.28 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.12 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.02 E-value=0.11 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999963
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.084 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHCCCC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAGRKT 930 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag~~~ 930 (1436)
+.+++|-|+-||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.11 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999988753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.78 E-value=0.11 Score=51.46 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999886
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=0.11 Score=51.11 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.13 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
+++|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.72 E-value=0.11 Score=51.36 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998775
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.65 E-value=0.12 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.-+.+.||+|+|||+|.++||..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 35568999999999999999974
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.62 E-value=0.12 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.14 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHH
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~La 926 (1436)
|=+.+|+++.|.|++|+|||||..-++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999999987776
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.54 E-value=0.12 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.15 Score=50.45 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHC
Q 038815 908 TALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag 927 (1436)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.13 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.43 E-value=0.13 Score=53.13 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
+-.+++++||+|+||||.+-=||.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344889999999999999877775
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.42 E-value=0.092 Score=52.55 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=0.16 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.11 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.29 E-value=0.12 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.12 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.23 E-value=0.13 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHC
Q 038815 908 TALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag 927 (1436)
++|+|.+|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.23 E-value=0.15 Score=52.70 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999987754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.17 E-value=0.13 Score=53.75 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999964
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.11 E-value=0.13 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999977654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.089 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.29 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977663
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.03 E-value=0.15 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 904 PGVLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 904 ~Ge~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.|.+++|=|+-||||||+.+.|+-+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999998654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=0.13 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999876
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.98 E-value=0.23 Score=49.25 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=27.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 180 ILKDVSGIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 180 iL~~vs~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
-|+. ++..-.|.=++|.|+||+|||||...|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4455 455568999999999999999998777654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.96 E-value=0.13 Score=56.68 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 038815 194 TLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+||+|.|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999863
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.13 Score=50.70 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 038815 194 TLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG 213 (1436)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.13 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=0.14 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998844
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.74 E-value=0.14 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.73 E-value=0.22 Score=49.72 Aligned_cols=29 Identities=28% Similarity=0.167 Sum_probs=23.8
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
...-.|.=+.|+|+||+|||||.-.|..+
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 33456778999999999999999888764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.65 E-value=0.15 Score=52.19 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038815 907 LTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~La 926 (1436)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=86.58 E-value=0.18 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.+++++||+|+||||.+-=||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999887777654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.49 E-value=0.16 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=16.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 191 GSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 191 Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
-.+++++||+|+||||.+-=||-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988777654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.37 E-value=0.14 Score=51.81 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999988753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.33 E-value=0.15 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.33 E-value=0.14 Score=53.66 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+.||+|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999974
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.31 E-value=0.18 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.24 E-value=0.14 Score=58.22 Aligned_cols=29 Identities=45% Similarity=0.650 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLDS 217 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~~ 217 (1436)
.++-+++|.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35679999999999999999999987654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.21 E-value=0.16 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=15.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
-.+++++||+|+||||.+-=||.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999877775
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.07 E-value=0.15 Score=50.41 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHC
Q 038815 908 TALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag 927 (1436)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998875
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.06 E-value=0.14 Score=57.43 Aligned_cols=28 Identities=39% Similarity=0.347 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 189 RPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 189 ~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5567899999999999999999999873
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.04 E-value=0.18 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|-|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.13 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.96 E-value=0.12 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=9.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.94 E-value=0.19 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999998888886653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.93 E-value=0.16 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.93 E-value=0.17 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999998888753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.91 E-value=0.16 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999987763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.17 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.77 E-value=0.13 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.+.|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57799999999999999998643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.74 E-value=0.2 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
-++|+|...+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999999754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=0.18 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.59 E-value=0.18 Score=52.44 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.|-||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999964
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.56 E-value=0.17 Score=51.97 Aligned_cols=21 Identities=38% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.51 E-value=0.19 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+||+|.-+||||||++.|.|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.37 E-value=0.18 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.33 E-value=0.19 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|.-+|||||||++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.29 E-value=0.28 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977664
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.22 E-value=0.19 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.18 E-value=0.2 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.14 E-value=0.28 Score=48.63 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=26.5
Q ss_pred EeeceEeeEeCCcEEEEEcCCCCcHHHHHHHHHCC
Q 038815 894 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 894 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-|+. ++..-.|.=+.|.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3444 445567888999999999999998777654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.10 E-value=0.21 Score=51.18 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999973
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.99 E-value=0.2 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
-+.|.||+|+|||+|.++||..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999964
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=0.2 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.89 E-value=0.27 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999975
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.88 E-value=0.23 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
..+.|.||+|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.82 E-value=0.14 Score=54.83 Aligned_cols=29 Identities=38% Similarity=0.546 Sum_probs=24.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
+=++.|+++.|.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 34678999999999999999997666654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.75 E-value=0.2 Score=50.44 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 038815 193 MTLLLGPPSSGKTTLLLALA 212 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~La 212 (1436)
.++|||.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999983
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.2 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|++|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.63 E-value=0.12 Score=55.67 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
+++|-|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.61 E-value=0.23 Score=50.49 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+++|-|.-||||||+++.|..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.2 Score=49.14 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.48 E-value=0.24 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=0.21 Score=53.71 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=25.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 187 IIRPGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 187 ~i~~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.|-.|+..+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999999998643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.32 E-value=0.22 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.19 E-value=0.3 Score=53.46 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
|.-.+++.||||+|||.|-++|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 44467778999999999999999985
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.17 E-value=0.25 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999885
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.2 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 038815 194 TLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 194 ~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 799999999999999987653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.09 E-value=0.25 Score=53.28 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
++||-|++|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.07 E-value=0.16 Score=54.52 Aligned_cols=31 Identities=45% Similarity=0.652 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 186 GIIRPGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 186 ~~i~~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|=++.|.+|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 4578999999999999999999988887643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.02 E-value=0.25 Score=53.08 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
..+-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999999985
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.00 E-value=3.8 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHC
Q 038815 905 GVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 905 Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.88 E-value=0.26 Score=53.04 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 389999999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.57 E-value=0.27 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998875
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=0.21 Score=51.92 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6899999999999999999875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=0.28 Score=53.85 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 190 PGSMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 190 ~Ge~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
|....+++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999998653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.24 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 038815 192 SMTLLLGPPSSGKTTLLLALAGKLD 216 (1436)
Q Consensus 192 e~~~llGp~GSGKSTLL~~LaG~~~ 216 (1436)
-+++|+||-++||||||+.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5899999999999999999999753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.42 E-value=0.24 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cCCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLALA-GKLDSS 218 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~La-G~~~~~ 218 (1436)
.++|||.+|+|||||++-+. |...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 57899999999999999874 333343
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.22 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGK 214 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~ 214 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999877654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.28 E-value=0.25 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.+||+|-+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.26 E-value=0.27 Score=49.37 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038815 907 LTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~La 926 (1436)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.00 E-value=0.25 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 038815 193 MTLLLGPPSSGKTTLLLALAGKL 215 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG~~ 215 (1436)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.92 E-value=0.3 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++++|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999954
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.76 E-value=0.28 Score=50.65 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+-||+|+||||+.++|+..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 568999999999999999853
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.57 E-value=0.27 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038815 193 MTLLLGPPSSGKTTLLLALAG 213 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~LaG 213 (1436)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999986654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.33 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.35 E-value=0.37 Score=51.27 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.3
Q ss_pred eeEeCCcEEEEEcCCCCcHHHHHHHHHC
Q 038815 900 GAFRPGVLTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 900 ~~i~~Ge~~al~G~sGaGKTTLl~~Lag 927 (1436)
|=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6889999999999999999999877664
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.30 E-value=0.31 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.55 E-value=0.35 Score=48.08 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 038815 907 LTALMGVSGAGKTTLMDVLAG 927 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag 927 (1436)
.+.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.47 E-value=0.34 Score=50.03 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038815 907 LTALMGVSGAGKTTLMDVLA 926 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~La 926 (1436)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.31 E-value=0.31 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.22 E-value=0.24 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 038815 907 LTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 907 ~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
++.|.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4566799999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.12 E-value=0.34 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~ 928 (1436)
+.+.||+|+||||+.++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 568999999999999999963
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.00 E-value=0.4 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC
Q 038815 908 TALMGVSGAGKTTLMDVLAGRK 929 (1436)
Q Consensus 908 ~al~G~sGaGKTTLl~~Lag~~ 929 (1436)
+.|.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6789999999999999999753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.69 E-value=0.33 Score=50.74 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Q 038815 1036 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1079 (1436)
Q Consensus 1036 ~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1079 (1436)
+.+++++||.-. |...+...+.+.+... .....+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence 456999999864 7777777776666543 22345788888875
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.51 E-value=0.42 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHH---hcCCCC
Q 038815 193 MTLLLGPPSSGKTTLLLAL---AGKLDS 217 (1436)
Q Consensus 193 ~~~llGp~GSGKSTLL~~L---aG~~~~ 217 (1436)
-++|+|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 4699999999999999998 565543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.35 E-value=0.3 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHCC
Q 038815 906 VLTALMGVSGAGKTTLMDVLAGR 928 (1436)
Q Consensus 906 e~~al~G~sGaGKTTLl~~Lag~ 928 (1436)
=.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999974
|